Query psy16393
Match_columns 121
No_of_seqs 138 out of 1051
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 20:11:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16393.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16393hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a65_A Leutaa, Na(+):neurotran 100.0 9.8E-32 3.3E-36 229.6 -3.7 91 28-118 4-102 (519)
2 3u85_B Histone-lysine N-methyl 33.6 9.2 0.00031 18.9 0.1 10 52-61 2-11 (21)
3 1cl8_A Protein (endonuclease); 11.3 47 0.0016 26.0 -0.2 15 53-67 160-174 (276)
4 3arc_M Photosystem II reaction 8.2 3.2E+02 0.011 15.0 2.8 24 68-91 6-29 (36)
5 2c4w_A 3-dehydroquinate dehydr 7.6 69 0.0024 23.6 -0.6 42 8-50 98-139 (176)
6 2lvl_A SPAI; lantibiotic SELF- 5.7 1.8E+02 0.0061 19.8 0.8 13 2-14 77-89 (128)
7 2lot_A Apelin receptor; membra 5.5 1.7E+02 0.0057 17.8 0.5 15 39-53 33-48 (64)
8 1gqo_A Dehydroquinase; dehydra 5.4 49 0.0017 23.6 -2.4 42 8-50 86-127 (143)
9 2ls2_A High affinity copper up 7.5 1.4E+02 0.0047 15.1 0.0 11 34-44 3-13 (26)
10 1h05_A 3-dehydroquinate dehydr 5.3 50 0.0017 23.7 -2.4 42 8-50 88-129 (146)
No 1
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=99.96 E-value=9.8e-32 Score=229.60 Aligned_cols=91 Identities=24% Similarity=0.310 Sum_probs=84.6
Q ss_pred CCCCCcchhHHHHHHhhhhccCcceeeccccccccC-ceehhHHHHHHHHhhhhHHHHHHhhcc----cccccceeeee-
Q psy16393 28 PLGFWMNEFSSMLACFGTTIGLFNISRFAILSVQFG-VNFIIQFIILSLIVGIPLFAFHVSLGQ----LLAKGCIQMWI- 101 (121)
Q Consensus 28 ~R~~W~sk~~fila~~G~avGLgNiWrFPyl~~~nG-g~Fli~Y~i~l~~~giPl~~lE~alGq----~~~~g~i~~~~- 101 (121)
+|++|+||++|+|||+|+|||+||+|||||+|++|| |+|++||+++++++|+|++++|+++|| ++|++++.+|+
T Consensus 4 ~R~~W~sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r~~~i~a~~~ 83 (519)
T 2a65_A 4 KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYL 83 (519)
T ss_dssp -CCCCSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHH
T ss_pred ccccCCcHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccCCCHHHHHHH
Confidence 699999999999999999999999999999999999 799999999999999999999999999 77889999995
Q ss_pred eccC--CceeeeeEEEeee
Q psy16393 102 ISPV--FKGEHEKRYQKAR 118 (121)
Q Consensus 102 ~~p~--~~GiG~a~~~~~~ 118 (121)
++|. ++|+|+++++.++
T Consensus 84 l~~~~~~~giG~~~v~~~~ 102 (519)
T 2a65_A 84 LWRNRFAKILGVFGLWIPL 102 (519)
T ss_dssp HSCSHHHHHHHTHHHHHHH
T ss_pred hcCCcCCchhhHHHHHHHH
Confidence 8876 9999998776543
No 2
>3u85_B Histone-lysine N-methyltransferase MLL; menin, MEN1, JUND, ledgf, TPR, transcription, epigeneti cancer; 3.00A {Homo sapiens}
Probab=33.60 E-value=9.2 Score=18.85 Aligned_cols=10 Identities=20% Similarity=0.016 Sum_probs=6.7
Q ss_pred eeeccccccc
Q psy16393 52 ISRFAILSVQ 61 (121)
Q Consensus 52 iWrFPyl~~~ 61 (121)
=||||.--..
T Consensus 2 rwrfparpg~ 11 (21)
T 3u85_B 2 RWRFPARPGT 11 (26)
T ss_pred ccccccCCCc
Confidence 4999965443
No 3
>1cl8_A Protein (endonuclease); endonuclease/DNA, DNA base analog, protein/DNA complex; HET: DNA PRN; 1.80A {Escherichia coli} SCOP: c.52.1.1 PDB: 1ckq_A* 1eri_A* 1qc9_A 2oxv_A* 1qps_A 1qrh_A 1qri_A
Probab=11.29 E-value=47 Score=26.03 Aligned_cols=15 Identities=33% Similarity=0.510 Sum_probs=12.6
Q ss_pred eeccccccccCceeh
Q psy16393 53 SRFAILSVQFGVNFI 67 (121)
Q Consensus 53 WrFPyl~~~nGg~Fl 67 (121)
-.|||+|+-.|+.|+
T Consensus 160 ~~fPyV~Fl~GsnF~ 174 (276)
T 1cl8_A 160 SHFPYVLFLEGSNFL 174 (276)
T ss_dssp SBCCEEEEEESTTSC
T ss_pred CCCceEEEeccCCcc
Confidence 379999999998775
No 4
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=8.18 E-value=3.2e+02 Score=14.98 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=16.4
Q ss_pred hHHHHHHHHhhhhHHHHHHhhccc
Q psy16393 68 IQFIILSLIVGIPLFAFHVSLGQL 91 (121)
Q Consensus 68 i~Y~i~l~~~giPl~~lE~alGq~ 91 (121)
+.|+..++++.+|..++=...=|-
T Consensus 6 l~fiAt~Lfi~iPt~FLlilYvqT 29 (36)
T 3arc_M 6 LGLIATALFVLVPSVFLIILYVQT 29 (36)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhee
Confidence 346778888888977765555443
No 5
>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway, aromatic amino acid biosynthesis, lyase, sulphonamide; HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A* 2xda_A* 1j2y_A* 2wks_A* 2xb9_A* 2c4v_A* 2xd9_A*
Probab=7.57 E-value=69 Score=23.64 Aligned_cols=42 Identities=17% Similarity=0.120 Sum_probs=28.6
Q ss_pred ccccccccchhccccccCCCCCCCCcchhHHHHHHhhhhccCc
Q psy16393 8 DEITKCVDREYDLHQQNLEHPLGFWMNEFSSMLACFGTTIGLF 50 (121)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~R~~W~sk~~fila~~G~avGLg 50 (121)
|+++...-+..++|- .....|+.|.++.=+--.|.|...|+|
T Consensus 98 DAl~~v~~P~VEVHi-SNi~aRE~FRh~S~is~~a~GvI~G~G 139 (176)
T 2c4w_A 98 DAIMLAGKPVIEVHL-TNIQAREEFRKNSYTGAACGGVIMGFG 139 (176)
T ss_dssp HHHHTSSSCEEEEES-SCGGGSCGGGTCCHHHHHSSEEEESST
T ss_pred HHHHhCCCCEEEEEe-cCcccccccccccccccceeEEEEecC
Confidence 455555556777784 556679998777666666777777776
No 6
>2lvl_A SPAI; lantibiotic SELF-immunity protein, subtilin, immune system, lantibiotic-binding-protein; NMR {Bacillus subtilis}
Probab=5.72 E-value=1.8e+02 Score=19.81 Aligned_cols=13 Identities=38% Similarity=0.404 Sum_probs=10.7
Q ss_pred ccccCCccccccc
Q psy16393 2 LILKNSDEITKCV 14 (121)
Q Consensus 2 ~~~~~~~~~~~~~ 14 (121)
.|.+|||++++-.
T Consensus 77 yi~~~pd~ir~k~ 89 (128)
T 2lvl_A 77 YISNNPDEIREKK 89 (128)
T ss_dssp SSCSCTTTCCCCE
T ss_pred cccCCHHHhhhcC
Confidence 3789999998876
No 7
>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A
Probab=5.47 E-value=1.7e+02 Score=17.83 Aligned_cols=15 Identities=13% Similarity=-0.124 Sum_probs=7.7
Q ss_pred HHHHhhhhcc-Cccee
Q psy16393 39 MLACFGTTIG-LFNIS 53 (121)
Q Consensus 39 ila~~G~avG-LgNiW 53 (121)
++-++-+.+| +||..
T Consensus 33 ~~Y~lvFvlGl~GN~l 48 (64)
T 2lot_A 33 AIYMLVFLLGTTGNGL 48 (64)
T ss_dssp HHHHHTTTTTTTSSSS
T ss_pred HHHHHHHHHHHhhhhh
Confidence 3344455666 46653
No 8
>1gqo_A Dehydroquinase; dehydratase, lyase; 2.10A {Bacillus subtilis} SCOP: c.23.13.1
Probab=5.45 E-value=49 Score=23.65 Aligned_cols=42 Identities=12% Similarity=0.023 Sum_probs=26.0
Q ss_pred ccccccccchhccccccCCCCCCCCcchhHHHHHHhhhhccCc
Q psy16393 8 DEITKCVDREYDLHQQNLEHPLGFWMNEFSSMLACFGTTIGLF 50 (121)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~R~~W~sk~~fila~~G~avGLg 50 (121)
|+++.+.-+..++|- .....|+.|.++.-+--.|.|...|+|
T Consensus 86 DAl~~v~~P~VEVHi-SNi~aRE~FRh~S~~s~~a~GvI~G~G 127 (143)
T 1gqo_A 86 DAVSSISLPVVEVHL-SNLYAREEFRHQSVIAPVAKGQIVGLG 127 (143)
T ss_dssp HHHHTSCSCEEEEES-SCGGGSCGGGGCCSSGGGSSEEEESST
T ss_pred HHHHhCCCCEEEEEe-cCcccccccccccccccceeEEEEecC
Confidence 455555556677774 555678888666544444566666665
No 9
>2ls2_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=7.46 E-value=1.4e+02 Score=15.09 Aligned_cols=11 Identities=9% Similarity=-0.263 Sum_probs=5.4
Q ss_pred chhHHHHHHhh
Q psy16393 34 NEFSSMLACFG 44 (121)
Q Consensus 34 sk~~fila~~G 44 (121)
+..++++||++
T Consensus 3 s~~~~v~Sci~ 13 (26)
T 2ls2_A 3 TAGEMAGAFVA 13 (26)
Confidence 34455555544
No 10
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A 2xb8_A* 2y71_A* 2y76_A* 2y77_A* 3n76_A* 3n7a_A* 3n86_A* 3n87_A* 3n8n_A*
Probab=5.33 E-value=50 Score=23.68 Aligned_cols=42 Identities=14% Similarity=0.052 Sum_probs=26.1
Q ss_pred ccccccccchhccccccCCCCCCCCcchhHHHHHHhhhhccCc
Q psy16393 8 DEITKCVDREYDLHQQNLEHPLGFWMNEFSSMLACFGTTIGLF 50 (121)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~R~~W~sk~~fila~~G~avGLg 50 (121)
|+++...-+..++|- .....|+.|.++.=+--.|.|...|+|
T Consensus 88 DAl~~v~~P~VEVHi-SNi~aRE~FRh~S~~s~~a~GvI~G~G 129 (146)
T 1h05_A 88 DACAELSAPLIEVHI-SNVHAREEFRRHSYLSPIATGVIVGLG 129 (146)
T ss_dssp HHHHTCCSCEEEEES-SCGGGSCGGGGCCSSGGGSSEEEESST
T ss_pred HHHHhCCCCEEEEEe-cCcccccccccccccccceeEEEEecC
Confidence 455555556677774 555678888766544444566666665
Done!