RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16393
(121 letters)
>gnl|CDD|212065 cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-dependent taurine
transporter TauT, and related proteins; solute-binding
domain. This subgroup represents the solute-binding
domain of TauT-like Na(+)- and Cl(-)-dependent
transporters. Family members include: human TauT which
transports taurine, human GAT1, GAT2, and GAT3, and
BGT1, which transport gamma-aminobutyric acid (GABA),
and human CT1 which transports creatine. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 543
Score = 61.8 bits (151), Expect = 2e-12
Identities = 31/78 (39%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 32 WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQ 90
W N+ +L+ G IGL N+ RF L + G F+I + I ++ GIP+F V+LGQ
Sbjct: 4 WSNKIDFLLSVAGYAIGLGNVWRFPYLCYKNGGGAFLIPYFIFLVLCGIPIFFLEVALGQ 63
Query: 91 LLAKGCIQMWIISPVFKG 108
++G I W I P+FKG
Sbjct: 64 YTSQGGITAWKICPLFKG 81
>gnl|CDD|212067 cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent glycine
transporter GlyT1; solute-binding domain. GlyT1 is a
membrane-bound transporter that re-uptakes glycine from
the synaptic cleft. Human GlyT1 is encoded by the SLC6A9
gene. GlyT1 is expressed in brain, pancreas, uterus,
stomach, spleen, liver, and retina. GlyT1 may play a
role in schizophrenia. This subgroup belongs to the
solute carrier 6 (SLC6) transporter family.
Length = 585
Score = 61.1 bits (148), Expect = 4e-12
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 30 GFWMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSL 88
G W N+ +L G +GL N+ RF L + G F+ + I+ + GIPLF +S
Sbjct: 18 GNWGNQIEFVLTSVGYAVGLGNVWRFPYLCYRNGGGAFMFPYFIMLVFCGIPLFFMELSF 77
Query: 89 GQLLAKGCIQMWIISPVFKG 108
GQ ++GC+ +W +SP+FKG
Sbjct: 78 GQFASQGCLGVWRVSPMFKG 97
>gnl|CDD|212078 cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent creatine
transporter 1; solute-binding domain. CT1 (also called
CRTR, CRT) transports creatine. Human CT1 is encoded by
the SLC6A8 gene. CT1 is ubiquitously expressed, with
highest levels found in skeletal muscle and kidney.
Creatine is absorbed from food or synthesized from
arginine and plays an important role in energy
metabolism. Deficiency in human CT1 leads to X-linked
cerebral creatine transporter deficiency. In males, this
disorder is characterized by language and speech delays,
autistic-like behavior, seizures in about 50% of cases,
and can also involve midfacial hypoplasia, and short
stature. In females, it is characterized by mild
cognitive impairment with behavior and learning
problems. This subgroup belongs to the solute carrier 6
(SLC6) transporter family.
Length = 592
Score = 61.0 bits (148), Expect = 5e-12
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 32 WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQ 90
W + +++C G +GL N+ RF L + G F+I ++++ + GIP+F ++LGQ
Sbjct: 4 WTRQMDFIMSCVGFAVGLGNVWRFPYLCYKNGGGVFLIPYLLIVFVGGIPVFFLEIALGQ 63
Query: 91 LLAKGCIQMWIISPVFKG 108
+ +G I W I+P+FKG
Sbjct: 64 FMKQGGINAWNIAPLFKG 81
>gnl|CDD|212071 cd11502, SLC6sbd_NTT5, Neurotransmitter transporter 5;
solute-binding domain. Human NTT5 is encoded by the
SLC6A16 gene. NTT5 is expressed in testis, pancreas, and
prostate; its expression is predominantly intracellular,
indicative of a vesicular location. Its substrates are
unknown. This subgroup belongs to the solute carrier 6
(SLC6) transporter family.
Length = 543
Score = 59.3 bits (144), Expect = 1e-11
Identities = 30/80 (37%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Query: 31 FWMNEFSSMLACFGTTIGLFNISRFAILSVQFG-VNFIIQFIILSLIVGIPLFAFHVSLG 89
W N+ +LA G ++GL N+ RF L ++ G +F+I + ++ +VGIPL +++G
Sbjct: 3 LWRNKTEYILAQVGFSLGLGNLWRFPYLCLRNGGGSFLIAYFVMLFLVGIPLLFLEMAVG 62
Query: 90 QLLAKGCIQMW-IISPVFKG 108
Q L +G I++W ISP F G
Sbjct: 63 QRLQQGSIRVWKAISPWFGG 82
>gnl|CDD|212069 cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent L-proline
transporter PROT; solute-binding domain. PROT is a
high-affinity L-proline transporter that transports
L-proline, and may have a role in excitatory
neurotransmission. Human PROT is encoded by the SLC6A7
gene, a potential susceptible gene for asthma. PROT is
expressed in the brain. This subgroup belongs to the
solute carrier 6 (SLC6) transporter family.
Length = 544
Score = 58.6 bits (142), Expect = 3e-11
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 32 WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQ 90
W + +L+C G +GL N+ RF L + G F+I + I+ GIPLF +SLGQ
Sbjct: 4 WGGKLEFLLSCIGYCVGLGNVWRFPYLCYRNGGGAFLIPYFIMLAFCGIPLFFMELSLGQ 63
Query: 91 LLAKGCIQMWIISPVFKG 108
+ G + +W P+FKG
Sbjct: 64 YGSLGPLTVWKCCPIFKG 81
>gnl|CDD|212034 cd10324, SLC6sbd, Solute carrier 6 family, neurotransmitter
transporters; solute-binding domain. This family
represents the solute-binding domain of SLC6 proteins
(also called the sodium- and chloride-dependent
neurotransmitter transporter family or Na+/Cl--dependent
transporter family). These use sodium and chloride
electrochemical gradients to catalyze the
thermodynamically uphill movement of a variety of
substrates, and include neurotransmitter transporters
(NTTs). The latter are Na+/Cl--dependent plasma membrane
transporters for the monoamine neurotransmitters
serotonin (5-hydroxytryptamine), dopamine, and
norepinephrine, and the amino acid neurotransmitters
GABA and glycine. NTTs are widely expressed in the
mammalian brain, and are involved in regulating
neurotransmitter signaling and homeostasis, through
facilitating the uptake of released neurotransmitters
from the extracellular space into neurons and glial
cells. NTTs are the target of a range of therapeutic
drugs for the treatment of psychiatric diseases, such as
major depression, anxiety disorders, attention deficit
hyperactivity disorder and epilepsy. In addition, they
are the primary targets of cocaine, amphetamines and
other psychostimulants. This family also includes
Drosophila Blot which is expressed primarily in
epithelial tissues of ectodermal origin and in the
nervous system of the embryo and larvae, but in addition
found in the developing oocyte and the freshly laid egg.
A lack or reduction of Blot function during oogenesis
results in early arrest of embryonic development. 12
transmembrane helices (TMs) appears to be common for
eukaryotic and some prokaryotic and archaeal SLC6s, (a
core inverted topology repeat, TM1-5 and TM6-10, plus
TMs11-12; TMs numbered to conform to the SLC6 Aquifex
aeolicus LeuT), although a majority of bacterial, and
some archaeal SLC6s lack TM12, for example the
functional Fusobacterium nucleatum tyrosine transporter
Tyt1.
Length = 417
Score = 58.3 bits (142), Expect = 3e-11
Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 30 GFWMNEFSSMLACFGTTIGLFNISRFAILSVQF-GVNFIIQFIILSLIVGIPLFAFHVSL 88
W ++ +L+C G +GL N+ RF L+ + G F+I ++I+ L+VGIPLF ++L
Sbjct: 1 EQWGSKLEFLLSCIGYAVGLGNVWRFPYLAYENGGGAFLIPYLIMLLLVGIPLFFLELAL 60
Query: 89 GQLLAKGCIQ-MWIISPVFKG 108
GQ ++G + W I P+FKG
Sbjct: 61 GQYTSRGPVGAFWRICPLFKG 81
>gnl|CDD|212070 cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent beta-alanine
transporter ATB0+; solute-binding domain. ATB0+ (also
known as the beta-alanine carrier) is a transmembrane
transporter with a broad substrate specificity; it can
transport non-alpha-amino acids such as beta-alanine
with low affinity, and can transport dipolar and
cationic amino acids such as leucine and lysine, with a
higher affinity. It may have a role in the absorption of
essential nutrients and drugs in the distal regions of
the human gastrointestinal tract. Human ATB0+ is encoded
by the SLC6A14 gene. ATB0+ is expressed in the lung,
trachea, salivary gland, mammary gland, stomach, and
pituitary gland. ATB0+ may play a role in obesity, and
its upregulation may have a pathogenic role in
colorectal cancer. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 601
Score = 57.9 bits (140), Expect = 4e-11
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 30 GFWMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSL 88
G W + +L+ G +GL N+ RF L+ + G F+I + I+ + G+PLF SL
Sbjct: 2 GNWSKKSDYLLSMIGYAVGLGNVWRFPYLTYKNGGGAFLIPYTIMLALAGLPLFFLECSL 61
Query: 89 GQLLAKGCIQMWIISPVFKG 108
GQ + G I +W P+ +G
Sbjct: 62 GQFASLGPISVWRAVPLLQG 81
>gnl|CDD|215790 pfam00209, SNF, Sodium:neurotransmitter symporter family.
Length = 506
Score = 57.3 bits (139), Expect = 7e-11
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 32 WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQ 90
W + +L+ G +GL N+ RF L + G F+I ++I + GIPLF ++LGQ
Sbjct: 4 WSGKLDFLLSVIGFAVGLGNVWRFPYLCYKNGGGAFLIPYLIFLITAGIPLFFLELALGQ 63
Query: 91 LLAKGCIQMWI-ISPVFKG 108
+G I +W I P+FKG
Sbjct: 64 YTREGAIGVWRKICPLFKG 82
>gnl|CDD|212086 cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3; solute-binding
domain. B0AT3 (also called Xtrp2, XT2) transports
glycine. Human B0AT3 is encoded by the SLC6A18 gene.
B0AT3 is expressed in the kidney. Mutations in the
SLC6A18 gene may contribute to the autosomal recessive
disorder iminoglycinuria and its related disorder
hyperglycinuria. SLC6A18 or its neighboring genes are
associated with increased susceptibility to myocardial
infarction. This subgroup belongs to the solute carrier
6 (SLC6) transporter family.
Length = 576
Score = 57.1 bits (138), Expect = 1e-10
Identities = 32/79 (40%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 32 WMNEFSSMLACFGTTIGLFNISRFAIL-SVQFGVNFIIQFIILSLIVGIPLFAFHVSLGQ 90
W N+ +L+C G +GL NI RF L G F+I + I + GIPLF +++GQ
Sbjct: 5 WDNKAQYLLSCIGFAVGLGNIWRFPYLCQTYGGGAFLIPYFIALVFEGIPLFHLELAIGQ 64
Query: 91 LLAKGCIQMW-IISPVFKG 108
L KG I +W ISP G
Sbjct: 65 RLRKGSIGVWTTISPYLGG 83
>gnl|CDD|212075 cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent GABA transporter
1; solute-binding domain. GAT1 transports
gamma-aminobutyric acid (GABA). GABA is the main
inhibitory neurotransmitter within the mammalian CNS.
Human GAT1 is encoded by the SLC6A1 gene. GAT1 is
expressed in brain and peripheral nervous system. The
antiepileptic drug, Tiagabine, inhibits GAT1. This
subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 598
Score = 56.9 bits (137), Expect = 1e-10
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 32 WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQ 90
W +F +++C G IGL N+ RF L + G F+I + + + G+PLF SLGQ
Sbjct: 46 WKGKFDFLMSCVGYAIGLGNVWRFPYLCGKNGGGAFLIPYFLTLIFAGVPLFLLECSLGQ 105
Query: 91 LLAKGCIQMWIISPVFKG 108
+ G + +W ++P+FKG
Sbjct: 106 YTSIGGLGVWKLAPMFKG 123
>gnl|CDD|212040 cd10332, SLC6sbd-B0AT-like, System B(0) neutral amino acid
transporter AT1, 2 and 3, and related proteins;
solute-binding domain. This subgroup includes the
solute-binding domain of transmembrane transporters,
which transport, i) neutral amino acids: NTT4 (also
called XT1), SBAT1 (also called B0AT2, v7-3, NTT7-3),
and B0AT1 (also called HND); the human genes encoding
these are SLC6A17, SLC6A15, and SLC6A19 respectively,
ii) glycine: B0AT3 (also called Xtrp2, XT2), iii) imino
acids, such as proline, pipecolate, MeAIB, and
sarcosine: SIT1 (also called XTRP3, XT3, IMINO). The
human genes encoding B0AT3 and SIT1 are SLC6A18 and
SLC6A20 respectively. Transporters in this subgroup may
play a role in disorders including major depression,
Hartnup disorder, increased susceptibility to myocardial
infarction, and iminoglycinuria. This subgroup belongs
to the solute carrier 6 (SLC6) transporter family.
Length = 565
Score = 56.1 bits (136), Expect = 2e-10
Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 32 WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQ 90
W N+ +LA G +GL N+ RF L + G F+I ++I+ ++ GIPLF +++GQ
Sbjct: 4 WDNKLQFLLATIGYAVGLGNVWRFPYLCQKNGGGAFLIPYVIMLVLEGIPLFFLELAIGQ 63
Query: 91 LLAKGCIQMW-IISPVFKG 108
L KG I +W ISP G
Sbjct: 64 RLRKGSIGVWNTISPYLGG 82
>gnl|CDD|212085 cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral amino acids
transporter, B0AT1; solute-binding domain. B0AT1 (also
called HND) transports neutral amino acids. Human B0AT1
is encoded by the SLC6A19 gene. B0AT1 is expressed
primarily in the kidney and intestine; it requires
collectrin for expression in the kidney, and
angiotensin-converting enzyme 2 for expression in the
intestine. Interaction with these two proteins
implicates B0AT1 in more complex processes such as
glomerular structure, exocytosis, and blood pressure
control. The autosomal recessive disorder, Hartnup
disorder, is caused by mutations in B0AT1. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 581
Score = 54.9 bits (132), Expect = 7e-10
Identities = 32/79 (40%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 32 WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQ 90
W N+ ML C G +GL N+ RF L G F+I F+IL + GIPL ++GQ
Sbjct: 4 WDNKAQYMLTCVGFCVGLGNVWRFPYLCQSHGGGAFMIPFLILLVFEGIPLLHLEFAIGQ 63
Query: 91 LLAKGCIQMW-IISPVFKG 108
L KG + +W I P KG
Sbjct: 64 RLRKGSVGVWSTIHPTLKG 82
>gnl|CDD|212068 cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent glycine
transporter GlyT2; solute-binding domain. GlyT2 (also
called NET1) is a membrane-bound transporter that
re-uptakes glycine from the synaptic cleft. Human GlyT2
is encoded by the SLC6A5 gene. GlyT2 is expressed in
brain and spinal cord. GlyT2 may play a role in pain,
and in spasticity. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 606
Score = 54.2 bits (130), Expect = 9e-10
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 30 GFWMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSL 88
G W N+ +L+ G +GL N+ RF L+ Q G F+I ++++ + GIP+F VSL
Sbjct: 2 GNWSNKLDFILSMVGYAVGLGNVWRFPYLAFQNGGGAFLIPYLMMLALAGIPIFFLEVSL 61
Query: 89 GQLLAKGCIQMWIISPVFKG 108
GQ ++G + +W P +G
Sbjct: 62 GQFASQGPVSVWKAIPALQG 81
>gnl|CDD|212087 cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent imino acid
transporter SIT1; solute-binding domain. SIT1 (also
called XTRP3, XT3, IMINO) transports imino acids, such
as proline, pipecolate, MeAIB, and sarcosine. It has
weak affinity for neutral amino acids such as
phenylalanine. Human SIT1 is encoded by the SLC6A20
gene. SIT1 is expressed in brain, kidney, small
intestine, thymus, spleen, ovary, and lung. SLC6A20 is a
candidate gene for the rare disorder iminoglycinuria.
This subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 576
Score = 53.7 bits (129), Expect = 1e-09
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 32 WMNEFSSMLACFGTTIGLFNISRFAILSVQFGV-NFIIQFIILSLIVGIPLFAFHVSLGQ 90
W N + AC +GL N+ RF L +G F+I ++I+ ++ G+PL +++GQ
Sbjct: 7 WDNPLQFVFACISYAVGLGNVWRFPYLCQMYGGGGFLIPYLIMLILEGMPLLYLELAVGQ 66
Query: 91 LLAKGCIQMW-IISPVFKG 108
+ +G I W ISP G
Sbjct: 67 RMRQGSIGAWKSISPYLGG 85
>gnl|CDD|212080 cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent betaine/GABA
transporter-1, and related proteins; solute-binding
domain. BGT1 is a relatively low-affinity transporter
of gamma-aminobutyric acid (GABA), and can also
transport betaine. GABA is the main inhibitory
neurotransmitter within the mammalian CNS. Human BGT1 is
encoded by the SLC6A12 gene, and is similar to mouse
GAT2. Mouse GAT2 plays a role in transporting GABA
across the blood-brain barrier. In addition to being
expressed in cells of the central nervous system, BGT1
is expressed in peripheral tissues, including kidney,
liver, and heart. An association has been shown between
the SLC6A12 gene and the occurrence of
aspirin-intolerant asthma, and BGT1 is a drug target for
antiepileptic drugs. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 541
Score = 52.6 bits (126), Expect = 4e-09
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 30 GFWMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSL 88
G W N+ +L+ G IGL N+ RF L + G F+I ++I GIPLF +L
Sbjct: 3 GQWRNKMEFVLSVAGEIIGLGNVWRFPYLCYKNGGGAFLIPYLIFLFTCGIPLFFLETAL 62
Query: 89 GQLLAKGCIQMW-IISPVFKG 108
GQ ++G + W I P+F+G
Sbjct: 63 GQYTSQGGVTAWRKICPIFEG 83
>gnl|CDD|212076 cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent GABA transporter
2; solute-binding domain. This family includes human
GAT2 (hGAT2) which transports gamma-aminobutyric acid
(GABA). GABA is the main inhibitory neurotransmitter
within the mammalian CNS. hGAT2 is encoded by the
SLC6A13 gene, and is similar to mouse GAT-3, and rat
GAT2. hGAT2 is expressed in brain, kidney, lung, and
testis. hGAT2 is a potential drug target for treatment
of epilepsy. This subgroup belongs to the solute carrier
6 (SLC6) transporter family.
Length = 544
Score = 51.8 bits (124), Expect = 6e-09
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 30 GFWMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSL 88
G W N+ +L+ G IGL N+ RF L + G F I ++I GIP+F +L
Sbjct: 2 GQWNNKLEFVLSVAGEIIGLGNVWRFPYLCYKNGGGAFFIPYLIFLFTCGIPVFFLETAL 61
Query: 89 GQLLAKGCIQMW-IISPVFKG 108
GQ ++G + W I P+F+G
Sbjct: 62 GQYTSQGGVTCWRKICPLFEG 82
>gnl|CDD|212091 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-chain amino-acid
transporter 1; solute-binding domain. SBAT1 (also
called B0AT2, v7-3, NTT7-3) is a high-affinity
Na(+)-dependent transporter for large neutral amino
acids, including leucine, isoleucine, valine, proline
and methionine. Human SBAT1 is encoded by the SLC6A15
gene, a susceptibility gene for major depression. SBAT1
is expressed in brain, and may have a role in
transporting neurotransmitter precursors into neurons.
This subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 580
Score = 50.7 bits (121), Expect = 2e-08
Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 32 WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQ 90
W ++ +LA G ++GL N+ RF L + G +++ ++IL L++GIPLF +S+GQ
Sbjct: 4 WNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLVPYLILLLVIGIPLFFLELSVGQ 63
Query: 91 LLAKGCIQMW-IISPVFKG 108
+ +G I +W ISP G
Sbjct: 64 RIRRGSIGVWNYISPKLGG 82
>gnl|CDD|212077 cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent GABA transporter
3; solute-binding domain. This family includes human
GAT3 (hGAT3) a high-affinity transporter of
gamma-aminobutyric acid (GABA). GABA is the main
inhibitory neurotransmitter within the mammalian CNS.
hGAT3 is encoded by the SLC6A11 gene, and is similar to
mouse GAT4, and rat GAT3/GATB. GAT3 is expressed
primarily in the glia of the brain, and is a potential
drug target for antiepileptic drugs. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 542
Score = 50.8 bits (121), Expect = 2e-08
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 30 GFWMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSL 88
G W N+ +L+ G IGL N+ RF L + G F+I +++ + GIP+F +L
Sbjct: 3 GHWNNKVEFVLSVAGEIIGLGNVWRFPYLCYKNGGGAFLIPYVVFFICCGIPVFFLETAL 62
Query: 89 GQLLAKGCIQMW-IISPVFKG 108
GQ ++G I W + P+F+G
Sbjct: 63 GQFTSEGGITCWRKVCPLFEG 83
>gnl|CDD|212081 cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent norepinephrine
transporter NET; solute-binding domain. NET (also
called NAT1, NET1), is a transmembrane transporter that
transports the neurotransmitter norepinephrine from
synaptic spaces into presynaptic neurons. Human NET is
encoded by the SLC6A2 gene. NET is expressed in brain,
peripheral nervous system, adrenal gland, and placenta.
NET may play a role in diseases or disorders including
depression, orthostatic intolerance, anorexia nervosa,
cardiovascular diseases, alcoholism, and
attention-deficit hyperactivity disorder. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 560
Score = 50.3 bits (120), Expect = 2e-08
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 32 WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQ 90
W + +L+ G + L N+ RF L + G F+I + + +I G+PLF ++LGQ
Sbjct: 4 WGKKIDFLLSVVGFAVDLANVWRFPYLCYKNGGGAFLIPYTLFLIIAGMPLFYMELALGQ 63
Query: 91 LLAKGCIQMWIISPVFKG 108
+G +W I P FKG
Sbjct: 64 YNREGAATVWKICPCFKG 81
>gnl|CDD|212084 cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurotransmitter
transporter 4, and related proteins; solute-binding
domain. This subgroup includes the solute-binding
domain of NTT4 (also called XT1) and SBAT1 (also called
B0AT2, v7-3, NTT7-3); both these proteins can transport
neutral amino acids. Human SBAT1 is encoded by the
SLC6A15 gene, a susceptibility gene for major
depression. SBAT1 is expressed in brain, and may have a
role in transporting neurotransmitter precursors into
neurons. Human NTT4 is encoded by the SLC6A17 gene. NTT4
is specifically expressed in the nervous system, in
synaptic vesicles of glutamatergic and GABAergic
neurons, and may play an important role in synaptic
transmission. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 530
Score = 50.3 bits (120), Expect = 2e-08
Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 32 WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQ 90
W ++ +LA G ++GL N+ RF L + G +++ ++IL +++GIPLF +S+GQ
Sbjct: 4 WNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLVPYLILLIVIGIPLFFLELSVGQ 63
Query: 91 LLAKGCIQMW-IISPVFKG 108
+ +G I +W ISP G
Sbjct: 64 RIRRGSIGVWNYISPKLGG 82
>gnl|CDD|212082 cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent serotonin
transporter SERT; solute-binding domain. SERT (also
called 5-HTT), is a transmembrane transporter that
transports the neurotransmitter serotonin from synaptic
spaces into presynaptic neurons. The antiport of a K+
ion is believed to follow the transport of serotonin and
promote the reorientation of SERT for another transport
cycle. Human SERT is encoded by the SLC6A4 gene. SERT is
expressed in brain, peripheral nervous system, placenta,
epithelium, and platelets. SERT may play a role in
diseases or disorders including anxiety, depression,
autism, gastrointestinal disorders, premature
ejaculation, and obesity. It may also have a role in
social cognition. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 537
Score = 49.4 bits (118), Expect = 5e-08
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 32 WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQ 90
W + +L+ G + L N+ RF + Q G F+I + ++++ GIPLF ++LGQ
Sbjct: 4 WGKKMDFLLSVIGFAVDLGNVWRFPYICYQNGGGAFLIPYTLMAIFGGIPLFYMELALGQ 63
Query: 91 LLAKGCIQMW-IISPVFKG 108
GCI +W I P+FKG
Sbjct: 64 YHRTGCISIWRKICPIFKG 82
>gnl|CDD|212083 cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent dopamine
transporter 1; solute-binding domain. DAT1 (also called
DAT), is a plasma membrane transport protein that
functions at the dopaminergic synapses to transport
dopamine from the extracellular space back into the
presynaptic nerve terminal. Human DAT1 is encoded by the
SLC6A3 gene, and is expressed in the brain. DAT1 may
play a role in diseases or disorders related to
dopaminergic neurons, including attention-deficit
hyperactivity disorder (ADHD), Tourette syndrome,
Parkinson's disease, alcoholism, drug abuse,
schizophrenia, extraversion, and risky behavior. This
subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 555
Score = 49.2 bits (117), Expect = 6e-08
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 32 WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQ 90
W + +L+ G + L N+ RF L + G F++ ++ +I G+PLF ++LGQ
Sbjct: 4 WGKKIDFLLSVIGFAVDLANVWRFPYLCYKNGGGAFLVPYLFFMVIAGMPLFYMELALGQ 63
Query: 91 LLAKGCIQMWIISPVFKG 108
+G +W I P+FKG
Sbjct: 64 FNREGAAGVWKICPIFKG 81
>gnl|CDD|212092 cd11554, SLC6sbd_u2, uncharacterized eukaryotic solute carrier 6
subfamily; solute-binding domain. SLC6 proteins (also
called the sodium- and chloride-dependent
neurotransmitter transporter family or Na+/Cl--dependent
transporter family) include neurotransmitter
transporters (NTTs): these are sodium- and
chloride-dependent plasma membrane transporters for the
monoamine neurotransmitters serotonin
(5-hydroxytryptamine), dopamine, and norepinephrine, and
the amino acid neurotransmitters GABA and glycine. These
NTTs are widely expressed in the mammalian brain, and
are involved in regulating neurotransmitter signaling
and homeostasis, and are the target of a range of
therapeutic drugs for the treatment of psychiatric
diseases. Bacterial members of the SLC6 family include
the LeuT amino acid transporter.
Length = 406
Score = 48.5 bits (116), Expect = 1e-07
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 32 WMNEFSSMLACFGTTIGLFNISRFAILSVQF-GVNFIIQFIILSLIVGIPLFAFHVSLGQ 90
W + + +LA G +GL N+ RF + G+ F I +++ +++ IP+ ++LGQ
Sbjct: 3 WGSRTAFVLAAMGGAVGLGNLLRFPSVVYNNGGLQFFIPYLLALVLLAIPILILELALGQ 62
Query: 91 LLAKGCIQMW-IISPVFKG 108
GC++ + +I+ KG
Sbjct: 63 AYRGGCVKAFNLINRRAKG 81
>gnl|CDD|212090 cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransmitter transporter
4; solute-binding domain. NTT4 (also called XT1)
transports the neutral amino acids, proline, glycine,
leucine, and alanine, and may play an important role in
synaptic transmission. Human NTT4 is encoded by the
SLC6A17 gene. NTT4 is specifically expressed in the
nervous system, in synaptic vesicles of glutamatergic
and GABAergic neurons. This subgroup belongs to the
solute carrier 6 (SLC6) transporter family.
Length = 589
Score = 48.4 bits (115), Expect = 1e-07
Identities = 23/70 (32%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 32 WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQ 90
W ++ +LA G ++GL N+ RF L + G +++ +++L +I+GIPLF +++GQ
Sbjct: 4 WNSKLQYILAQIGYSVGLGNVWRFPYLCQKNGGGAYLVPYLVLLIIIGIPLFFLELAVGQ 63
Query: 91 LLAKGCIQMW 100
+ +G I +W
Sbjct: 64 RIRRGSIGVW 73
>gnl|CDD|212094 cd11556, SLC6sbd_SERT-like_u1, uncharacterized subgroup of the
SERT-like Na(+)- and Cl(-)-dependent monoamine
transporter subfamily; solute binding domain. SERT-like
Na(+)- and Cl(-)-dependent monoamine transporters,
transport monoamine neurotransmitters from synaptic
spaces into presynaptic neurons. Members include: the
norepinephrine transporter NET, the serotonin
transporter SERT , and the dopamine transporter DAT1.
These latter may play a role in diseases or disorders
including depression, anxiety disorders, and
attention-deficit hyperactivity disorder, and in the
control of human behavior and emotional states. They
belongs to the solute carrier 6 (SLC6) transporter
family. Members of this subgroup are uncharacterized.
Length = 552
Score = 48.2 bits (115), Expect = 1e-07
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 32 WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQ 90
W + +L+ G + L N+ RF L + G F+I + I+ ++ GIPLF ++LGQ
Sbjct: 4 WSKKVDFLLSVIGFAVDLANVWRFPYLCYKNGGGAFLIPYGIMLVVGGIPLFYMELALGQ 63
Query: 91 LLAKGCIQMW-IISPVFKG 108
KG I W I P+FKG
Sbjct: 64 YYRKGAITSWGRICPLFKG 82
>gnl|CDD|212079 cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent taurine
transporter; solute-binding domain. TauT is a Na(+)-
and Cl(-)-dependent, high-affinity, low-capacity
transporter of taurine and beta-alanine. Human TauT is
encoded by the SLC6A6 gene. TauT is expressed in brain,
retina, liver, kidney, heart, spleen, and pancreas. It
may play a part in the supply of taurine to the
intestinal epithelium and in the between-meal-capture of
taurine. It may also participate in re-absorbing taurine
that has been deconjugated from bile acids in the distal
lumen. Functional TauT protects kidney cells from
nephrotoxicity caused by the chemotherapeutic agent
cisplatin; cisplatin down-regulates TauT in a
p53-dependent manner. In mice, TauT has been shown to be
important for the maintenance of skeletal muscle
function and total exercise capacity. TauT-/- mice
develop additional clinically important diseases, some
of which are characterized by apoptosis, including
vision loss, olfactory dysfunction, and chronic liver
disease. This subgroup belongs to the solute carrier 6
(SLC6) transporter family.
Length = 542
Score = 44.1 bits (104), Expect = 3e-06
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 32 WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQ 90
W ++ +L+ G +GL N+ RF L + G F+I + I G+P+F V+LGQ
Sbjct: 4 WASKIDFVLSVAGGFVGLGNVWRFPYLCYKNGGGAFLIPYFIFLFGGGLPVFFLEVALGQ 63
Query: 91 LLAKGCIQMWI-ISPVFKG 108
++G I W + P+F G
Sbjct: 64 YTSEGGITCWEKLCPIFTG 82
>gnl|CDD|212066 cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-dependent monoamine
transporters, SERT, NET, DAT1 and related proteins;
solute binding domain. This subgroup represents the
solute-binding domain of transmembrane transporters that
transport monoamine neurotransmitters from synaptic
spaces into presynaptic neurons. Members include: NET
which transports norepinephrine, SERT which transports
serotonin, and DAT1 which transports dopamine. These
transporters may play a role in diseases including
depression, anxiety disorders, attention-deficit
hyperactivity disorder, and in the control of human
behavior and emotional states. This subgroup belongs to
the solute carrier 6 (SLC6) transporter family.
Length = 539
Score = 44.2 bits (105), Expect = 3e-06
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 39 MLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQLLAKGCI 97
+L+ G + L N+ RF + + G F+I ++++ + G+PLF ++LGQ GCI
Sbjct: 11 LLSVIGFAVDLGNVWRFPYICYKNGGGAFLIPYLLMLIFGGLPLFYMELALGQYHRSGCI 70
Query: 98 QMWI-ISPVFKG 108
+W I P+FKG
Sbjct: 71 TVWRKICPIFKG 82
>gnl|CDD|223805 COG0733, COG0733, Na+-dependent transporters of the SNF family
[General function prediction only].
Length = 439
Score = 38.4 bits (90), Expect = 3e-04
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 39 MLACFGTTIGLFNISRFAILSVQFG-VNFIIQFIILSLIVGIPLFAFHVSLGQLLAKGCI 97
+LA G+ +GL NI RF ++ + G F++ ++I L+VGIPL ++G+ K +
Sbjct: 15 ILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGIPLLLAEFAIGRRGRKNAV 74
Query: 98 Q 98
Sbjct: 75 G 75
>gnl|CDD|212041 cd10333, LeuT-like_sbd, Aquifex aeolicus LeuT and related
proteins; solute binding domain. LeuT is a bacterial
amino acid transporter with specificity for the
hydrophobic amino acids glycine, alanine, methionine,
and leucine. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family; LeuT has been used
as a structural template for understanding fundamental
aspects of SLC6 function. It has an arrangement of 12
transmembrane helices (TMs), which appears to be a
common motif for eukaryotic and some prokaryotic and
archaeal SLC6s: an inverted topology repeat: TMs1-5 and
TMs6-10, and TMs11-12.
Length = 500
Score = 32.6 bits (75), Expect = 0.028
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 32 WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPL 81
W + +LA G +GL N RF + + Q G F+I + I L+VGIPL
Sbjct: 4 WGSRIGLILAMAGNAVGLGNFLRFPVQAAQNGGGAFMIPYFIAFLLVGIPL 54
>gnl|CDD|212031 cd06857, SLC5-6-like_sbd, Solute carrier families 5 and 6-like;
solute binding domain. This superfamily includes the
solute-binding domain of SLC5 proteins (also called the
sodium/glucose cotransporters or solute sodium
symporters), SLC6 proteins (also called the sodium- and
chloride-dependent neurotransmitter transporters or
Na+/Cl--dependent transporters), and
nucleobase-cation-symport-1 (NCS1) transporters. SLC5s
co-transport Na+ with sugars, amino acids, inorganic
ions or vitamins. SLC6s include Na+/Cl--dependent
plasma membrane transporters for the monoamine
neurotransmitters serotonin, dopamine, and
norepinephrine, and the amino acid neurotransmitters
GABA and glycine. NCS1s are essential components of
salvage pathways for nucleobases and related
metabolites; their known substrates include allantoin,
uracil, thiamine, and nicotinamide riboside. Members of
this superfamily are important in human physiology and
disease. They contain a functional core of 10
transmembrane helices (TMs): an inverted structural
repeat, TMs1-5 and TMs6-10; TMs numbered to conform to
the SLC6 Aquifex aeolicus LeuT.
Length = 413
Score = 32.2 bits (73), Expect = 0.047
Identities = 9/54 (16%), Positives = 18/54 (33%)
Query: 36 FSSMLACFGTTIGLFNISRFAILSVQFGVNFIIQFIILSLIVGIPLFAFHVSLG 89
++ + I + G+ II +I S I I L + + +
Sbjct: 1 WALGASLIAAAISAEQFIGMSGSGYSIGLAQIISYIWASAITLIILGKYFLPIF 54
>gnl|CDD|212042 cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal
solute carrier 6 subfamily; solute-binding domain.
SLC6 proteins (also called the sodium- and
chloride-dependent neurotransmitter transporter family
or Na+/Cl--dependent transporter family) include
neurotransmitter transporters (NTTs): these are sodium-
and chloride-dependent plasma membrane transporters for
the monoamine neurotransmitters serotonin
(5-hydroxytryptamine), dopamine, and norepinephrine,
and the amino acid neurotransmitters GABA and glycine.
These NTTs are widely expressed in the mammalian brain,
involved in regulating neurotransmitter signaling and
homeostasis, and the target of a range of therapeutic
drugs for the treatment of psychiatric diseases.
Bacterial members of the SLC6 family include the LeuT
amino acid transporter.
Length = 480
Score = 30.5 bits (70), Expect = 0.14
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 34 NEFSS----MLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSL 88
++ S +LA G+ +GL NI RF ++ + G F+I ++I L GIPL L
Sbjct: 2 EQWGSRLGFILAAIGSAVGLGNIWRFPYVAYENGGGAFLIPYLIALLTAGIPLLILEYGL 61
Query: 89 GQ 90
G
Sbjct: 62 GH 63
>gnl|CDD|212043 cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily,
Fusobacterium nucleatum Tyt1-like; solute-binding
domain. SLC6 proteins (also called the sodium- and
chloride-dependent neurotransmitter transporter family
or Na+/Cl--dependent transporter family) include
neurotransmitter transporters (NTTs): these are sodium-
and chloride-dependent plasma membrane transporters for
the monoamine neurotransmitters serotonin
(5-hydroxytryptamine), dopamine, and norepinephrine,
and the amino acid neurotransmitters GABA and glycine.
These NTTs are widely expressed in the mammalian brain,
involved in regulating neurotransmitter signaling and
homeostasis, and the target of a range of therapeutic
drugs for the treatment of psychiatric diseases.
Bacterial members of the SLC6 family include the LeuT
amino acid transporter. An arrangement of 12
transmembrane (TM) helices appears to be as a common
topological motif for eukaryotic and some prokaryotic
and archaeal NTTs. However, this subfamily which
contains the majority of bacterial members and some
archaeal members, appears to contain only 11 TMs; for
example the functional Fusobacterium nucleatum tyrosine
transporter Tyt1.
Length = 439
Score = 30.1 bits (69), Expect = 0.24
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 40 LACFGTTIGLFNISRFAILSVQFG-VNFIIQFIILSLIVGIPLF 82
LA G+ +GL NI RF L+ + G F++ +++ L++G+PL
Sbjct: 11 LAAAGSAVGLGNIWRFPYLAGENGGGAFLLVYLLFVLLIGLPLL 54
>gnl|CDD|111089 pfam02157, Man-6-P_recep, Mannose-6-phosphate receptor. This
family includes both Cation-dependent and cation
independent mannose-6-phosphate receptors.
Length = 278
Score = 28.8 bits (64), Expect = 0.59
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 13/76 (17%)
Query: 31 FWMNEFSSMLACFGTTIGLFNISRFAILSVQFG----VNFIIQFIILSLIVG------IP 80
F++ E S LAC + + ++S +IL V F V I F+ L+VG P
Sbjct: 169 FYLFEMDSSLAC---SPEISHLSVGSILLVIFASLVAVYIIGGFLYQRLVVGAKGMEQFP 225
Query: 81 LFAFHVSLGQLLAKGC 96
AF LG L+A GC
Sbjct: 226 HLAFWQDLGNLVADGC 241
>gnl|CDD|233139 TIGR00814, stp, serine transporter. The Hydroxy/Aromatic Amino
Acid Permease (HAAAP) Family- serine/threonine
subfamily (TC 2.A.42.2) The HAAAP family includes well
characterized aromatic amino acid:H+ symport permeases
and hydroxy amino acid permeases. This subfamily is
specific for hydroxy amino acid transporters and
includes the serine permease, SdaC, of E. coli, and the
threonine permease, TdcC, of E. coli.//added GO terms,
none avaialbelf or ser/thr specifically [SS 2/6/05]
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 397
Score = 28.5 bits (64), Expect = 0.78
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 39 MLACFGTTIG---LFNISRFAILSVQFGVNFIIQFIILSLIVGIPLFAFHVSLGQLLAKG 95
ML +GT IG LF L +Q G+ + +++++I + H +L + L
Sbjct: 9 MLGLYGTAIGAGVLF-------LPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSS 61
>gnl|CDD|227383 COG5050, EPT1, sn-1,2-diacylglycerol ethanolamine- and
cholinephosphotranferases [Lipid metabolism].
Length = 384
Score = 28.2 bits (63), Expect = 0.96
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 40 LACFGTTIGLFNISRFAILSVQFGVNFIIQFIILSLIVGI-PLFAFHVSLGQLLAK 94
C R A+ + N + LS I+G+ P FA+ VS+ L+
Sbjct: 224 FVCVALLSNGVCAFRNALFYYERTANNCALILHLSAILGLLPFFAYFVSIFTLVPT 279
>gnl|CDD|234225 TIGR03480, HpnN, hopanoid biosynthesis associated RND transporter
like protein HpnN. The genomes containing members of
this family share the machinery for the biosynthesis of
hopanoid lipids. Furthermore, the genes of this family
are usually located proximal to other components of this
biological process. The proteins appear to be related to
the RND family of export proteins, particularly the
hydrophobe/amphiphile efflux-3 (HAE3) family represented
by TIGR00921.
Length = 862
Score = 28.0 bits (63), Expect = 1.3
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 41 ACFGT-TIGLFN-IS-RFAILSVQFGVNFIIQF 70
A F T +G N IS FA+L + GV+F IQF
Sbjct: 311 AAFATLAVGHLNLISVAFAVLFIGLGVDFAIQF 343
>gnl|CDD|218678 pfam05656, DUF805, Protein of unknown function (DUF805). This
family consists of several bacterial proteins of
unknown function.
Length = 112
Score = 27.2 bits (61), Expect = 1.3
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Query: 29 LGFWMNEFSSMLACFGTTIGLFNISRFAILSVQFGVNFIIQFIILSLIVGIPLFAFHV 86
+W +L T+ L ++ S + ++SL + IP A V
Sbjct: 12 SEYWW----FVLFNILITLVLLILAALLSGSSSLLSGGGLLLGLISLAIFIPSLAVTV 65
>gnl|CDD|181244 PRK08133, PRK08133, O-succinylhomoserine sulfhydrylase; Validated.
Length = 390
Score = 26.5 bits (59), Expect = 4.4
Identities = 8/17 (47%), Positives = 11/17 (64%), Gaps = 2/17 (11%)
Query: 43 FGTTIGLFN--ISRFAI 57
FG+T+ LF +RF I
Sbjct: 110 FGSTVSLFEKIFARFGI 126
>gnl|CDD|189857 pfam01146, Caveolin, Caveolin. All three known Caveolin forms have
the FEDVIAEP caveolin 'signature motif' within their
hydrophilic N-terminal domain. Caveolin 2 (Cav-2) is
co-localised and co-expressed with Cav-1/VIP21, forms
heterodimers with it and needs Cav-1 for proper membrane
localisation. Cav-3 has greater protein sequence
similarity to Cav-1 than to Cav-2. Cellular processes
caveolins are involved in include vesicular transport,
cholesterol homeostasis, signal transduction, and tumour
suppression.
Length = 148
Score = 25.7 bits (57), Expect = 6.0
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 16/60 (26%)
Query: 49 LFNISRFAILSVQFGVNFIIQFIILSLIVGIPL-FAFHVSLGQLLAKGCIQMWIISPVFK 107
F +S++ I + +L+ ++ IPL F + + L C+ +WI+ P K
Sbjct: 62 TFEVSKYWI------------YRLLTALLAIPLAFVWGILFALL---SCLHIWIVVPCIK 106
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug
and toxic compound extrusion (MATE) proteins. The
integral membrane proteins from the MATE family are
involved in exporting metabolites across the cell
membrane and are responsible for multidrug resistance
(MDR) in many bacteria and animals. A number of family
members are involved in the synthesis of peptidoglycan
components in bacteria.
Length = 440
Score = 25.6 bits (57), Expect = 6.9
Identities = 11/46 (23%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 66 FIIQFIILSLIVGI--PLFAFHVSLGQLLAKGCIQMWIISPVFKGE 109
+++ FI +S++ G+ P+FA + L + L + W++ V
Sbjct: 366 YVVLFISVSVLQGLKRPIFALWIGLYRQLVGPALVFWLLVNVLGLG 411
>gnl|CDD|218492 pfam05197, TRIC, TRIC channel. TRIC (trimeric intracellular
cation) channels are differentially expressed in
intracellular stores in animal cell types. TRIC
subtypes contain three proposed transmembrane segments,
and form homo-trimers with a bullet-like structure.
Electrophysiological measurements with purified TRIC
preparations identify a monovalent cation-selective
channel.
Length = 197
Score = 25.8 bits (57), Expect = 6.9
Identities = 10/21 (47%), Positives = 11/21 (52%), Gaps = 3/21 (14%)
Query: 27 HPLGFWMNEFSSMLACFGTTI 47
PL W S+ML CFG I
Sbjct: 14 SPLACW---LSAMLMCFGGAI 31
>gnl|CDD|217634 pfam03601, Cons_hypoth698, Conserved hypothetical protein 698.
Length = 305
Score = 25.3 bits (56), Expect = 9.0
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Query: 43 FGTTIGLFNISRFAILSVQFGVNFIIQFIILSLIVGIPLFAFHVSLGQLLAKGC-----I 97
+G + L +I+ + V +I +L L +G L +L LLA G
Sbjct: 68 YGFRLTLSDIAAVGLKGVLIDAIVLISTFLLVLFLGQRLLGLDKNLALLLAAGSSICGAS 127
Query: 98 QMWIISPVFKGEHEK 112
+ PV K E+
Sbjct: 128 AIAATEPVIKARPEE 142
>gnl|CDD|233506 TIGR01647, ATPase-IIIA_H, plasma-membrane proton-efflux P-type
ATPase. This model describes the plasma membrane proton
efflux P-type ATPase found in plants, fungi, protozoa,
slime molds and archaea. The best studied representative
is from yeast.
Length = 754
Score = 25.4 bits (56), Expect = 9.6
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 46 TIGLFNISRFAILSVQFGVNF--IIQFIILSLIVGIP 80
IG+ + +L G +F +QF ++ L+ GIP
Sbjct: 213 LIGVLVLIELVVLFFGRGESFREGLQFALVLLVGGIP 249
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.330 0.144 0.445
Gapped
Lambda K H
0.267 0.0755 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,192,190
Number of extensions: 556160
Number of successful extensions: 1144
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1106
Number of HSP's successfully gapped: 154
Length of query: 121
Length of database: 10,937,602
Length adjustment: 84
Effective length of query: 37
Effective length of database: 7,211,866
Effective search space: 266839042
Effective search space used: 266839042
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.1 bits)