RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16393
         (121 letters)



>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane
          protein, transport protein; HET: BOG; 1.65A {Aquifex
          aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A*
          2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A*
          3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A*
          3uso_A 3usp_A* 3qs5_A* ...
          Length = 519

 Score = 31.6 bits (72), Expect = 0.040
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 40 LACFGTTIGLFNISRFAILSVQF-GVNFIIQFIILSLIVGIPLFAFHVSLG 89
          LA  G  +GL N  RF + + +  G  F+I +II  L+VGIPL     ++G
Sbjct: 16 LAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMG 66


>1zkr_A Major allergen I polypeptide, fused chain 1, CHAI; CAT allergen,
          uteroglobin, secretoglobin; 1.64A {Felis catus} SCOP:
          a.101.1.1 a.101.1.1 PDB: 2ejn_A
          Length = 153

 Score = 28.6 bits (63), Expect = 0.40
 Identities = 8/44 (18%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 3  ILKNSDEITKCVDREYDLHQQNLEHPLGFWMNEFSSMLACFGTT 46
          +L+N+  +  CVD +  + +++ E+ L   +++  +   C    
Sbjct: 35 VLENARILKNCVDAK--MTEEDKENALSL-LDKIYTSPLCVKMA 75


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 27.3 bits (60), Expect = 1.6
 Identities = 20/128 (15%), Positives = 38/128 (29%), Gaps = 56/128 (43%)

Query: 19  DLHQQNLEHPLGFWMNEFSSMLACFGTT----------------------IGLFNISRFA 56
            + + +LE+  G      S ML+    T                      I L N ++  
Sbjct: 322 SILEDSLENNEG----VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK-- 375

Query: 57  ILSVQFGVNFIIQFIILSLIVGIP--LFAFHVSLGQLLAK-GCIQMWIISPVFKGEHEKR 113
                   N +        + G P  L+  +++L +  A  G  Q        +    +R
Sbjct: 376 --------NLV--------VSGPPQSLYGLNLTLRKAKAPSGLDQ-------SRIPFSER 412

Query: 114 YQKARVDS 121
             K +  +
Sbjct: 413 --KLKFSN 418


>3ide_A PP, capsid protein VP2; jelly roll, beta sandwich, icosahedral
           particle, virion, VIR particle; 3.35A {Infectious
           pancreatic necrosis virus -}
          Length = 442

 Score = 26.2 bits (57), Expect = 3.2
 Identities = 4/45 (8%), Positives = 11/45 (24%)

Query: 34  NEFSSMLACFGTTIGLFNISRFAILSVQFGVNFIIQFIILSLIVG 78
           ++    +   GT   L+  +   + S     +             
Sbjct: 210 SQRLPPVPATGTLTTLYEGNADIVNSTTVTGDINFSLAEQPADET 254


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 25.6 bits (55), Expect = 6.7
 Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 14/50 (28%)

Query: 2   LILKNSDEIT----------KC-VDREYDLHQQNLEH---PLGFWMNEFS 37
           L+ K   E T          K  ++ EY LH+  ++H   P  F  ++  
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465


>3fbx_A Putative phospholipase B-like 2; alpha beta, glycosylated,
           disulphide bonds, oxidized cystein glycoprotein,
           hydrolase, lipid degradation, lysosome; HET: NAG PG4
           PGE; 2.40A {Mus musculus} PDB: 3fgw_A*
          Length = 559

 Score = 25.2 bits (54), Expect = 7.0
 Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 2/34 (5%)

Query: 31  FWMNEFSSMLACFGTTIGLFNISRFAILSVQFGV 64
           F++    S L    TTIG  N + +  +  Q  V
Sbjct: 271 FYIL--GSGLVTLETTIGNKNPALWKYVQPQGCV 302


>3fgr_B Putative phospholipase B-like 2 40 kDa form; alpha beta,
           glycosylated, disulphide bonds, N-terminal nucle
           hydrolase fold, two chain form; HET: NAG; 1.80A {Mus
           musculus} PDB: 3fgt_B*
          Length = 357

 Score = 25.1 bits (54), Expect = 7.9
 Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 2/34 (5%)

Query: 31  FWMNEFSSMLACFGTTIGLFNISRFAILSVQFGV 64
           F++    S L    TTIG  N + +  +  Q  V
Sbjct: 69  FYIL--GSGLVTLETTIGNKNPALWKYVQPQGCV 100


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.330    0.144    0.445 

Gapped
Lambda     K      H
   0.267   0.0856    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,797,078
Number of extensions: 94460
Number of successful extensions: 169
Number of sequences better than 10.0: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 14
Length of query: 121
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 39
Effective length of database: 4,412,271
Effective search space: 172078569
Effective search space used: 172078569
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.2 bits)