RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16393
         (121 letters)



>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter
           homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
          Length = 509

 Score = 48.3 bits (114), Expect = 3e-08
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 32  WMNEFSSMLACFGTTIGLFNISRFAILSVQF-GVNFIIQFIILSLIVGIPLFAFHVSLGQ 90
           W      +LA  G  +GL N  RF + + +  G  F+I +II  L+VGIPL     ++G+
Sbjct: 4   WATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGR 63

Query: 91  LLAKGCIQMW 100
                     
Sbjct: 64  YGGAQGHGTT 73


>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 640

 Score = 26.4 bits (57), Expect = 1.1
 Identities = 6/18 (33%), Positives = 13/18 (72%), Gaps = 1/18 (5%)

Query: 16 REY-DLHQQNLEHPLGFW 32
          ++Y  LH++++E P  F+
Sbjct: 1  QDYQRLHKESIEDPAKFF 18


>d2ejna1 a.101.1.1 (A:1-72) Allergen Fel d I-A chain {Cat (Felis
          catus) [TaxId: 9685]}
          Length = 72

 Score = 24.4 bits (53), Expect = 1.8
 Identities = 9/38 (23%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 3  ILKNSDEITKCVDREYDLHQQNLEHPLGFWMNEFSSML 40
          +L+N+  +  CVD +  + +++ E+ L      ++S L
Sbjct: 34 VLENARILKNCVDAK--MTEEDKENALSLLDKIYTSPL 69


>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
          [TaxId: 28901]}
          Length = 643

 Score = 24.6 bits (53), Expect = 4.0
 Identities = 5/19 (26%), Positives = 10/19 (52%), Gaps = 1/19 (5%)

Query: 17 EY-DLHQQNLEHPLGFWMN 34
          +Y   ++Q++  P  FW  
Sbjct: 19 QYETKYKQSINDPDTFWGE 37


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.144    0.445 

Gapped
Lambda     K      H
   0.267   0.0724    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 444,017
Number of extensions: 17903
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 11
Length of query: 121
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 46
Effective length of database: 1,377,846
Effective search space: 63380916
Effective search space used: 63380916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (21.9 bits)