BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16395
(157 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3P0J|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|C Chain C, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|D Chain D, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
Length = 690
Score = 28.9 bits (63), Expect = 1.2, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 19 FISPFRQVFMDEVNQQKMLPTIRSYLKLYTTLPLSKLA 56
+ P RQ F ++L ++SY K TLPL++ A
Sbjct: 337 LLEPVRQHFASNEEAHELLEAVKSYRKDGATLPLAETA 374
>pdb|3P0H|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Fisetin, Cubic Crystal Form
pdb|3P0H|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Fisetin, Cubic Crystal Form
pdb|3P0I|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Cubic Crystal Form
pdb|3P0I|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Cubic Crystal Form
Length = 690
Score = 28.9 bits (63), Expect = 1.2, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 19 FISPFRQVFMDEVNQQKMLPTIRSYLKLYTTLPLSKLA 56
+ P RQ F ++L ++SY K TLPL++ A
Sbjct: 337 LLEPVRQHFASNEEAHELLEAVKSYRKDGATLPLAETA 374
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 11 KPGLFYSHFISPFRQVFMDEVNQQKMLPTIRSYLKLY 47
+PG+ Y + ++ MDE+ ++K+ T SYL++Y
Sbjct: 129 EPGVMYLTMLHLYK--CMDEIKEEKICSTAVSYLEVY 163
>pdb|4IMV|A Chain A, Ricin A-chain Variant 1-33/44-198 With Engineered
Disulfide Bond, R48c/t77c/d75n
Length = 189
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%)
Query: 31 VNQQKMLPTIRSYLKLYTTLPLSKLATFMGNARAGQDSEIERDVDKETKSLITHLL 86
+NQ+ +L + ++ +L TL L+ ++ RAG + ++E ITHL
Sbjct: 44 INQRFILVELSNHAELSVTLALNVCNAYVVGYRAGNSAYFFHPDNQEDAEAITHLF 99
>pdb|3FYS|A Chain A, Crystal Structure Of Degv, A Fatty Acid Binding Protein
From Bacillus Subtilis
Length = 315
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 102 SGLEGTFQSGSELDFYIDNEMIHIADTKVAHRYGDFFIRKIIKF--------EELNKKLQ 153
SG+ GTF S + D +DN ++ D++++ F+ K + E++ K+L+
Sbjct: 124 SGISGTFSSAAAADSMVDNIDVYPFDSEISCLAQGFYALKAAELIKNGASSPEDIIKELE 183
Query: 154 AIK 156
+K
Sbjct: 184 EMK 186
>pdb|3LC9|A Chain A, Ricin A-Chain Variant 1-3344-198 With Engineered
Disulfide Bond
Length = 189
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 31 VNQQKMLPTIRSYLKLYTTLPLSKLATFMGNARAGQDSEIERDVDKETKSLITHLL 86
+NQ+ +L + ++ +L TL L ++ RAG + ++E ITHL
Sbjct: 44 INQRFILVELSNHAELSVTLALDVCNAYVVGYRAGNSAYFFHPDNQEDAEAITHLF 99
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 26.2 bits (56), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 28/63 (44%)
Query: 21 SPFRQVFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMGNARAGQDSEIERDVDKETKS 80
+P + +P R +L L + + + ++ A A QDSE+ V+ E +
Sbjct: 88 APLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRE 147
Query: 81 LIT 83
L+T
Sbjct: 148 LLT 150
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,400,939
Number of Sequences: 62578
Number of extensions: 171033
Number of successful extensions: 473
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 456
Number of HSP's gapped (non-prelim): 18
length of query: 157
length of database: 14,973,337
effective HSP length: 91
effective length of query: 66
effective length of database: 9,278,739
effective search space: 612396774
effective search space used: 612396774
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)