RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16395
         (157 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 40.8 bits (95), Expect = 9e-05
 Identities = 26/111 (23%), Positives = 40/111 (36%), Gaps = 31/111 (27%)

Query: 7   LIVVKPGLFYSHFISPFRQVFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMG-NARAG 65
           L V  P  F+SH + P   +   ++ +  +       +++    P+    TF G + R  
Sbjct: 421 LPVASP--FHSHLLVPASDLINKDLVKNNVSFN-AKDIQI----PV--YDTFDGSDLRVL 471

Query: 66  QDSEIERDVD----------KETKSLITHLLAFKHKMKNVVWTRGPSGLEG 106
             S  ER VD            T+   TH+L F           GP G  G
Sbjct: 472 SGSISERIVDCIIRLPVKWETTTQFKATHILDF-----------GPGGASG 511


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 33.0 bits (74), Expect = 0.021
 Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 13/41 (31%)

Query: 33 QQKMLPTIRSYLKLYT--TLPLSKLATFMGNARAGQDSEIE 71
          +++ L  +++ LKLY   + P   LA     A       +E
Sbjct: 18 EKQALKKLQASLKLYADDSAP--ALAI---KA------TME 47


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 29.8 bits (66), Expect = 0.43
 Identities = 21/150 (14%), Positives = 39/150 (26%), Gaps = 52/150 (34%)

Query: 4   LNKLIVVKPGLFYSHFISPFRQVFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMGNAR 63
           LN L   +P  +   F      VF    +                 +P   L+    +  
Sbjct: 363 LNVL---EPAEYRKMFDRLS--VFPPSAH-----------------IPTILLSLIWFD-- 398

Query: 64  AGQDSEIERDVDKETKSLITHLLAFKHKMKNVVWTRGPSGLEGTFQSGSELDFYIDNEMI 123
                 I+ DV      L  + L  K   ++ +               S    Y++   +
Sbjct: 399 -----VIKSDVMVVVNKLHKYSLVEKQPKESTI---------------SIPSIYLE-LKV 437

Query: 124 HIADTKVAHRYGDFFIRKIIKFEELNKKLQ 153
            + +    H       R I+    + K   
Sbjct: 438 KLENEYALH-------RSIVDHYNIPKTFD 460



 Score = 28.3 bits (62), Expect = 1.3
 Identities = 24/167 (14%), Positives = 49/167 (29%), Gaps = 62/167 (37%)

Query: 16  YSHFISPFRQVFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMGNARAGQDSEI----- 70
           Y   +S F   F+D  + + +    +S L                        EI     
Sbjct: 18  YKDILSVFEDAFVDNFDCKDVQDMPKSILS---------------------KEEIDHIIM 56

Query: 71  ERDVDKETKSLITHLLAFKHKMKNVV-------------W--------TRGPSGLEGTFQ 109
            +D    T  L   LL+   K + +V             +         R PS +   + 
Sbjct: 57  SKDAVSGTLRLFWTLLS---KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113

Query: 110 SGSELDFYIDNEMIHIADTKVAHRYGDFFIRKIIKFEELNKKLQAIK 156
              +   Y DN+            +  + + ++  + +L + L  ++
Sbjct: 114 EQRD-RLYNDNQ-----------VFAKYNVSRLQPYLKLRQALLELR 148



 Score = 26.4 bits (57), Expect = 6.2
 Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 29/96 (30%)

Query: 13  GLFYSHF------------ISPFRQVFMD-EVNQQKMLPTIRSYLKLYTTLPLSKLATFM 59
             FYSH             ++ FR VF+D    +QK    IR +         S L T  
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK----IR-HDSTAWNASGSILNTL- 524

Query: 60  GNARAGQDSEIER----DVDKETKSLITHLLAFKHK 91
                 Q  +  +    D D + + L+  +L F  K
Sbjct: 525 ------QQLKFYKPYICDNDPKYERLVNAILDFLPK 554


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
           fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
           RED beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 1688

 Score = 28.7 bits (64), Expect = 0.98
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 25/92 (27%)

Query: 60  GNARAGQDSEIERDVDKETKSLITHL-LAFKHKMKNVVWTRGPSGLEGTFQSGSELDFYI 118
           G+AR     E+E   +    SL   + +A+   M  + +  G   L+G   +G     ++
Sbjct: 832 GSAR--TRWEMEAFGEF---SLEGCVEMAWI--MGFISYHNGN--LKGRPYTG-----WV 877

Query: 119 D---NEMIHIADTKVAHRYGDFF-----IRKI 142
           D    E +   D  V  +Y         IR I
Sbjct: 878 DSKTKEPV--DDKDVKAKYETSILEHSGIRLI 907


>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2,
           structure initiative, northeast structural genomics
           consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP:
           b.40.4.5 b.40.4.16 PDB: 2r7f_A
          Length = 469

 Score = 25.3 bits (56), Expect = 9.4
 Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 7/64 (10%)

Query: 15  FYSHFISPFRQVFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMG--NARAGQDSEIER 72
            Y+   SP R+ ++D V  Q     +R++L     L    +A  +      A    + ER
Sbjct: 334 LYAQATSPMRR-YLDLVVHQ----QLRAFLAGRDPLSSKVMAAHIAESQMNADATRQAER 388

Query: 73  DVDK 76
              +
Sbjct: 389 LSRR 392


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.139    0.399 

Gapped
Lambda     K      H
   0.267   0.0843    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,334,783
Number of extensions: 127673
Number of successful extensions: 254
Number of sequences better than 10.0: 1
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 16
Length of query: 157
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 71
Effective length of database: 4,300,587
Effective search space: 305341677
Effective search space used: 305341677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.0 bits)