RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16395
         (157 letters)



>d2ix0a4 b.40.4.16 (A:173-557) Exoribonuclease 2, RNB {Escherichia
           coli [TaxId: 562]}
          Length = 385

 Score = 27.2 bits (59), Expect = 0.96
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 15  FYSHFISPFRQVFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMGNARAGQDSEIERDV 74
            Y+ + SP R+ + D +N + +   I+         P  ++   M   R   +   ERDV
Sbjct: 319 AYATWTSPIRK-YGDMINHRLLKAVIKGETATR---PQDEITVQM-AERRRLNRMAERDV 373

Query: 75  DK 76
             
Sbjct: 374 GD 375


>d2r7da2 b.40.4.16 (A:3-403) Ribonuclease II family protein DR0020
           {Deinococcus radiodurans [TaxId: 1299]}
          Length = 401

 Score = 26.9 bits (58), Expect = 1.1
 Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 7/67 (10%)

Query: 15  FYSHFISPFRQVFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMG--NARAGQDSEIER 72
            Y+   SP R+ ++D V  Q     +R++L     L    +A  +      A    + ER
Sbjct: 332 LYAQATSPMRR-YLDLVVHQ----QLRAFLAGRDPLSSKVMAAHIAESQMNADATRQAER 386

Query: 73  DVDKETK 79
              +   
Sbjct: 387 LSRRHHT 393


>d2vnud4 b.40.4.16 (D:495-910) Exosome complex exonuclease RRP44
           {Saccharomyces cerevisiae [TaxId: 4932]}
          Length = 416

 Score = 26.1 bits (56), Expect = 2.4
 Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 3/63 (4%)

Query: 16  YSHFISPFRQVFMDEVNQQKMLPTIRSYLKLYTTLPLSKLATFMG--NARAGQDSEIERD 73
           Y+HF SP R+ + D V  +++   I       T    +K+       N +        R 
Sbjct: 345 YTHFTSPIRR-YCDVVAHRQLAGAIGYEPLSLTHRDKNKMDMICRNINRKHRNAQFAGRA 403

Query: 74  VDK 76
             +
Sbjct: 404 SIE 406


>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor,
           TRCF {Escherichia coli [TaxId: 562]}
          Length = 211

 Score = 24.6 bits (53), Expect = 5.1
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 2/30 (6%)

Query: 99  RGPSGLEGTFQSGS--ELDFYIDNEMIHIA 126
           RG   L G  QSGS   + F +  E++  A
Sbjct: 175 RGAGELLGEEQSGSMETIGFSLYMELLENA 204


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.139    0.399 

Gapped
Lambda     K      H
   0.267   0.0623    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 573,399
Number of extensions: 24355
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 14
Length of query: 157
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 79
Effective length of database: 1,336,656
Effective search space: 105595824
Effective search space used: 105595824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (22.9 bits)