Query psy16397
Match_columns 60
No_of_seqs 93 out of 95
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 20:16:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16397.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16397hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vx8_A Nucleoporin-like protei 59.3 18 0.00062 22.9 4.6 31 17-47 95-127 (169)
2 3ulb_A Target of rapamycin com 56.4 7.5 0.00025 24.3 2.3 21 15-35 28-48 (121)
3 1no5_A Hypothetical protein HI 46.4 11 0.00037 21.8 1.8 19 6-24 34-54 (114)
4 2uvp_A HOBA; hypothetical prot 46.1 5.8 0.0002 26.5 0.6 35 14-48 44-78 (186)
5 3voq_A Target of rapamycin com 43.0 19 0.00067 22.5 2.7 21 14-34 29-49 (125)
6 2z14_A EF-hand domain-containi 37.7 17 0.00059 22.4 1.9 18 16-33 40-57 (133)
7 1wot_A Putative minimal nucleo 35.8 7.5 0.00026 22.0 -0.1 18 6-23 32-51 (98)
8 1ylq_A Putative nucleotidyltra 31.1 11 0.00037 21.2 0.1 17 6-22 24-43 (96)
9 3r07_C Putative lipoate-protei 30.8 6.8 0.00023 22.5 -0.8 32 16-52 20-54 (91)
10 1mvf_D MAZE protein, PEMI-like 28.3 72 0.0025 17.2 3.3 19 16-34 32-50 (82)
11 2rff_A Putative nucleotidyltra 27.7 14 0.00047 21.6 0.1 18 6-23 40-59 (111)
12 1kmd_A VAM7P, vacuolar morphog 25.6 19 0.00066 20.8 0.5 17 26-42 24-40 (117)
13 2kd2_A FAS apoptotic inhibitor 21.9 73 0.0025 18.9 2.6 34 3-36 36-74 (94)
No 1
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=59.34 E-value=18 Score=22.91 Aligned_cols=31 Identities=13% Similarity=0.328 Sum_probs=27.2
Q ss_pred eeEEeeCCE--EEEeeccchhhhhhHHHHHHHH
Q psy16397 17 LDFYIDNEM--IHIADTKVAHRYGDFFIRKIIK 47 (60)
Q Consensus 17 ldF~id~dm--IhI~e~k~~rry~d~Flr~i~K 47 (60)
+.|++++++ ++|.+..-.+|++..||..|.+
T Consensus 95 fHyl~~ngl~yl~I~D~~yp~r~AF~fLedI~~ 127 (169)
T 2vx8_A 95 FHYICQDRIVYLCITDDDFERSRAFSFLNEVKK 127 (169)
T ss_dssp EEEEEETTEEEEEEEETTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCEEEEEEEccccchHHHHHHHHHHHH
Confidence 788898887 4788999999999999999876
No 2
>3ulb_A Target of rapamycin complex 2 subunit AVO1; PH domain, membrane localization, membrane protein; 1.90A {Saccharomyces cerevisiae} PDB: 3ulc_A
Probab=56.36 E-value=7.5 Score=24.34 Aligned_cols=21 Identities=19% Similarity=0.110 Sum_probs=15.2
Q ss_pred cceeEEeeCCEEEEeeccchh
Q psy16397 15 AMLDFYIDNEMIHIADTKVAH 35 (60)
Q Consensus 15 sDldF~id~dmIhI~e~k~~r 35 (60)
+.--|.||||-|||.++..+.
T Consensus 28 ~ER~L~IDGdYIHImP~~~~~ 48 (121)
T 3ulb_A 28 HERTLAIDGDYIYIVPPEGRI 48 (121)
T ss_dssp EEEEEEEETTEEEEECCC---
T ss_pred ccEEEEEcCceEEEecCCCCc
Confidence 345689999999999987654
No 3
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=46.44 E-value=11 Score=21.79 Aligned_cols=19 Identities=26% Similarity=0.235 Sum_probs=14.9
Q ss_pred CcccCCee--ecceeEEeeCC
Q psy16397 6 QGLTEGTL--TAMLDFYIDNE 24 (60)
Q Consensus 6 g~LleG~~--~sDldF~id~d 24 (60)
||...|+. .||+|+.|..+
T Consensus 34 GS~ArG~~~~~SDIDl~V~~~ 54 (114)
T 1no5_A 34 GSRVKGKAKKYSDLDLAIISE 54 (114)
T ss_dssp GGGTTTCCCTTCCEEEEEECS
T ss_pred eccCCCCCCCCCCeEEEEEeC
Confidence 67788874 79999997643
No 4
>2uvp_A HOBA; hypothetical protein, unknown function, DNAA, SIS fold, DNA replication; 1.7A {Helicobacter pylori} PDB: 2uvp_B 2wp0_A
Probab=46.08 E-value=5.8 Score=26.54 Aligned_cols=35 Identities=3% Similarity=0.205 Sum_probs=28.7
Q ss_pred ecceeEEeeCCEEEEeeccchhhhhhHHHHHHHHH
Q psy16397 14 TAMLDFYIDNEMIHIADTKVAHRYGDFFIRKIIKF 48 (60)
Q Consensus 14 ~sDldF~id~dmIhI~e~k~~rry~d~Flr~i~K~ 48 (60)
++-+.+.++|..+-|..-+...+|.+|++.+|.+.
T Consensus 44 a~~l~~il~G~s~iviTD~~R~WF~~Yil~~IN~~ 78 (186)
T 2uvp_A 44 AQTISHVLNGGSLLVSADSSRHWFLNYILSNLNPK 78 (186)
T ss_dssp HHHHHHHHTTCEEEEEECGGGHHHHHHHHHHHSCS
T ss_pred HHHHHHHhCCCeEEEEeCchHHHHHHHHHHHhcCc
Confidence 44577888888887777788899999999999864
No 5
>3voq_A Target of rapamycin complex 2 subunit mapkap1; PH domain, membrane protein; 2.00A {Homo sapiens}
Probab=43.01 E-value=19 Score=22.50 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=17.1
Q ss_pred ecceeEEeeCCEEEEeeccch
Q psy16397 14 TAMLDFYIDNEMIHIADTKVA 34 (60)
Q Consensus 14 ~sDldF~id~dmIhI~e~k~~ 34 (60)
.++.-+.||+|-|||.+...+
T Consensus 29 ~te~~L~IdGd~ihI~P~~~~ 49 (125)
T 3voq_A 29 TTDVQLGISGDKVEIDPVTNQ 49 (125)
T ss_dssp EEEEEEEECSSEEEEEECC--
T ss_pred ceeEEEEecCcEEEEeeccCC
Confidence 577889999999999998654
No 6
>2z14_A EF-hand domain-containing family member C2; DUF1126, human EF-hand domain, alternative splicing, polymorphism, signaling protein; 1.68A {Homo sapiens} PDB: 2z13_A
Probab=37.68 E-value=17 Score=22.40 Aligned_cols=18 Identities=22% Similarity=0.615 Sum_probs=15.8
Q ss_pred ceeEEeeCCEEEEeeccc
Q psy16397 16 MLDFYIDNEMIHIADTKV 33 (60)
Q Consensus 16 DldF~id~dmIhI~e~k~ 33 (60)
-|-||+.+|+|.|.|.++
T Consensus 40 ~I~YyL~DdTieI~E~~~ 57 (133)
T 2z14_A 40 KIYFYPEDDTIQVNEPEV 57 (133)
T ss_dssp EEEEETTTTEEEEECCC-
T ss_pred EEEEEcCCCcEEEEecCc
Confidence 488999999999999988
No 7
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=35.80 E-value=7.5 Score=22.00 Aligned_cols=18 Identities=17% Similarity=0.298 Sum_probs=13.5
Q ss_pred CcccCCee--ecceeEEeeC
Q psy16397 6 QGLTEGTL--TAMLDFYIDN 23 (60)
Q Consensus 6 g~LleG~~--~sDldF~id~ 23 (60)
||...|+. .||+|+.|.-
T Consensus 32 GS~arG~~~~~SDiDl~V~~ 51 (98)
T 1wot_A 32 GSVARGEAREDSDLDLLVAF 51 (98)
T ss_dssp SHHHHTCCCTTCCCEEEECC
T ss_pred ccccCCCCCCCCCEEEEEEe
Confidence 56666775 7999999754
No 8
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=31.14 E-value=11 Score=21.20 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=12.4
Q ss_pred CcccCCee--e-cceeEEee
Q psy16397 6 QGLTEGTL--T-AMLDFYID 22 (60)
Q Consensus 6 g~LleG~~--~-sDldF~id 22 (60)
||...|+. . ||+|+.|-
T Consensus 24 GS~ArG~~~~~~SDiDllV~ 43 (96)
T 1ylq_A 24 GSVVEGDYSIGLSDIDVAIV 43 (96)
T ss_dssp SHHHHCCSSSCCCSEEEEEE
T ss_pred EEEEeCCCCCCCCceEEEEE
Confidence 56666774 5 99999864
No 9
>3r07_C Putative lipoate-protein ligase A subunit 2; adenylate-forming enzyme, BI-partite, ATP-binding, transferase; 2.70A {Thermoplasma acidophilum dsm 1728}
Probab=30.84 E-value=6.8 Score=22.55 Aligned_cols=32 Identities=31% Similarity=0.504 Sum_probs=19.3
Q ss_pred ceeEEeeCCEEEEeeccchhhhhhHHHH---HHHHHHHHH
Q psy16397 16 MLDFYIDNEMIHIADTKVAHRYGDFFIR---KIIKFEELN 52 (60)
Q Consensus 16 DldF~id~dmIhI~e~k~~rry~d~Flr---~i~K~~~~~ 52 (60)
++++-+++..| +..+-|||||+. .+..+++.+
T Consensus 20 ~v~l~v~~G~I-----~~vki~GDFf~~p~~~i~~le~~L 54 (91)
T 3r07_C 20 RVTLDLDGNRI-----KDIHISGDFFMFPEDSINRLEDML 54 (91)
T ss_dssp EEEEEEETTEE-----EEEEEEEEBCCBSTTHHHHHHHHH
T ss_pred EEEEEEcCCEE-----EEEEEEcccCCCcchhHHHHHHHH
Confidence 34455666665 455679999963 355555444
No 10
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=28.31 E-value=72 Score=17.24 Aligned_cols=19 Identities=5% Similarity=0.060 Sum_probs=13.9
Q ss_pred ceeEEeeCCEEEEeeccch
Q psy16397 16 MLDFYIDNEMIHIADTKVA 34 (60)
Q Consensus 16 DldF~id~dmIhI~e~k~~ 34 (60)
.+++.++++.|.|...+..
T Consensus 32 ~v~i~~~~~~iii~p~~~~ 50 (82)
T 1mvf_D 32 EVKIDLVDGKLIIEPVRKE 50 (82)
T ss_dssp BEEEEEETTEEEEEEC---
T ss_pred EEEEEEECCEEEEEECCCC
Confidence 5899999999999877654
No 11
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=27.69 E-value=14 Score=21.62 Aligned_cols=18 Identities=17% Similarity=0.167 Sum_probs=13.1
Q ss_pred CcccCCee--ecceeEEeeC
Q psy16397 6 QGLTEGTL--TAMLDFYIDN 23 (60)
Q Consensus 6 g~LleG~~--~sDldF~id~ 23 (60)
||...|+. .||+|+.|..
T Consensus 40 GS~ArG~~~~~SDIDl~V~~ 59 (111)
T 2rff_A 40 GSRARGDYLDTSDIDILFVF 59 (111)
T ss_dssp SHHHHSCCCTTCCEEEEEEE
T ss_pred eeeecCCCCCCCCEEEEEEe
Confidence 56666774 7999999753
No 12
>1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain, phosphoinositide binding, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1
Probab=25.57 E-value=19 Score=20.78 Aligned_cols=17 Identities=18% Similarity=0.626 Sum_probs=12.9
Q ss_pred EEEeeccchhhhhhHHH
Q psy16397 26 IHIADTKVAHRYGDFFI 42 (60)
Q Consensus 26 IhI~e~k~~rry~d~Fl 42 (60)
|.|.+..+.|||.||.-
T Consensus 24 I~v~~~~V~RRYsdF~~ 40 (117)
T 1kmd_A 24 VSTPNKRLYKRYSEFWK 40 (117)
T ss_dssp EECSSCCEEECHHHHHH
T ss_pred EEEceEEEEechHHHHH
Confidence 44457788899999874
No 13
>2kd2_A FAS apoptotic inhibitory molecule 1; protein, beta sandwich, apoptosis; NMR {Mus musculus} PDB: 2kw1_A
Probab=21.93 E-value=73 Score=18.91 Aligned_cols=34 Identities=21% Similarity=0.167 Sum_probs=24.9
Q ss_pred cccCcccC--Cee---ecceeEEeeCCEEEEeeccchhh
Q psy16397 3 VKNQGLTE--GTL---TAMLDFYIDNEMIHIADTKVAHR 36 (60)
Q Consensus 3 ~~~g~Lle--G~~---~sDldF~id~dmIhI~e~k~~rr 36 (60)
|.+|...+ |+. -++-.|-+.+.--+|...+.++|
T Consensus 36 wvNG~~iet~geFvd~GTet~F~lg~~~c~I~a~sSG~k 74 (94)
T 2kd2_A 36 WCNGQKMETAGEFVDDGTETHFSVGNHDCYIKAVSSGKR 74 (94)
T ss_dssp EESSSBCCCCCEECSSSEEEEEEETTEEEEEEEEEESSS
T ss_pred EECCEEeEEeeEEecCCcEEEEEeCCceEEEEEEecCCC
Confidence 77888877 665 35578888877777777777654
Done!