Query psy16397
Match_columns 60
No_of_seqs 93 out of 95
Neff 4.8
Searched_HMMs 13730
Date Fri Aug 16 20:16:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16397.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16397hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xpja_ c.108.1.18 (A:) Hypoth 69.3 1.5 0.00011 25.5 2.3 40 8-56 83-123 (124)
2 d1no5a_ d.218.1.5 (A:) Hypothe 50.6 4 0.00029 22.0 1.8 18 6-23 29-48 (100)
3 d1a9xa1 a.92.1.1 (A:403-555) C 44.2 8.4 0.00061 22.7 2.7 21 37-57 56-76 (153)
4 d1h2vc2 a.118.1.14 (C:291-480) 42.8 3.2 0.00024 26.0 0.6 18 32-49 118-135 (190)
5 d2qqra2 b.34.9.1 (A:956-1011) 41.6 2.9 0.00021 21.8 0.2 14 1-14 10-23 (56)
6 d1wota_ d.218.1.5 (A:) Unnamed 34.5 4.4 0.00032 22.0 0.2 18 6-23 32-51 (98)
7 d1kmda_ d.189.1.1 (A:) Vam7p { 29.7 6.9 0.0005 21.6 0.5 18 25-42 23-40 (117)
8 d1eeja2 d.17.3.1 (A:1-60) Disu 24.8 25 0.0018 17.5 2.3 20 14-33 40-59 (60)
9 d2gtsa1 a.25.5.1 (A:4-80) Hypo 23.6 27 0.002 18.6 2.3 14 41-54 11-24 (77)
10 d1knya2 d.218.1.1 (A:1-125) Ka 22.7 7 0.00051 22.1 -0.4 17 6-22 38-56 (125)
11 d2ogka1 d.77.1.2 (A:4-144) Hyp 22.6 52 0.0038 18.7 3.7 34 23-56 45-84 (141)
12 d2fug71 d.82.2.2 (7:3-129) NAD 22.0 9.7 0.00071 22.5 0.2 11 3-13 95-106 (127)
13 d2e1fa1 a.60.8.1 (A:1142-1235) 21.1 19 0.0014 19.2 1.4 17 32-49 66-82 (94)
14 d1vqza1 d.224.1.3 (A:242-329) 20.1 6.3 0.00046 21.1 -0.9 32 16-52 19-51 (88)
No 1
>d1xpja_ c.108.1.18 (A:) Hypothetical protein VC0232 {Vibrio cholerae [TaxId: 666]}
Probab=69.28 E-value=1.5 Score=25.47 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=29.2
Q ss_pred ccCCee-ecceeEEeeCCEEEEeeccchhhhhhHHHHHHHHHHHHHHHHh
Q psy16397 8 LTEGTL-TAMLDFYIDNEMIHIADTKVAHRYGDFFIRKIIKFEELNKKLQ 56 (60)
Q Consensus 8 LleG~~-~sDldF~id~dmIhI~e~k~~rry~d~Flr~i~K~~~~~~~l~ 56 (60)
|.-|+| ...-|||||+--+ +..+||-.++.+.+++++..+
T Consensus 83 Li~gKP~~~~~d~yIDDkai---------~~~~f~~~~~~~i~~~~~~~k 123 (124)
T d1xpja_ 83 ILVGKPWCGHDGFYIDDRAV---------RPSEFASMNLEEIHQLFEKEK 123 (124)
T ss_dssp EEECCCCCCTTCEEECTTEE---------CHHHHHHCCHHHHHHHHHGGG
T ss_pred EEECCCCCCCCCEEeeCCCC---------ChHHHHhcCHHHHHHHHHhhc
Confidence 444776 3466899998776 678898878888777776654
No 2
>d1no5a_ d.218.1.5 (A:) Hypothetical protein HI0073 {Haemophilus influenzae [TaxId: 727]}
Probab=50.65 E-value=4 Score=22.00 Aligned_cols=18 Identities=22% Similarity=0.182 Sum_probs=14.6
Q ss_pred CcccCCee--ecceeEEeeC
Q psy16397 6 QGLTEGTL--TAMLDFYIDN 23 (60)
Q Consensus 6 g~LleG~~--~sDldF~id~ 23 (60)
||...|+. .||+|+.|..
T Consensus 29 GS~arg~~~~~SDiDl~I~~ 48 (100)
T d1no5a_ 29 GSRVKGKAKKYSDLDLAIIS 48 (100)
T ss_dssp GGGTTTCCCTTCCEEEEEEC
T ss_pred CCCCCCCcCCCCCceEEEEe
Confidence 77777884 8999999864
No 3
>d1a9xa1 a.92.1.1 (A:403-555) Carbamoyl phosphate synthetase, large subunit connection domain {Escherichia coli [TaxId: 562]}
Probab=44.19 E-value=8.4 Score=22.67 Aligned_cols=21 Identities=19% Similarity=0.412 Sum_probs=15.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhh
Q psy16397 37 YGDFFIRKIIKFEELNKKLQA 57 (60)
Q Consensus 37 y~d~Flr~i~K~~~~~~~l~~ 57 (60)
.-.|||.||.++-++-+.|+.
T Consensus 56 ID~WFL~qi~~Iv~~E~~l~~ 76 (153)
T d1a9xa1 56 IDRWFLVQIEELVRLEEKVAE 76 (153)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHHHhhhhh
Confidence 467999999887666555543
No 4
>d1h2vc2 a.118.1.14 (C:291-480) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.76 E-value=3.2 Score=26.04 Aligned_cols=18 Identities=17% Similarity=0.530 Sum_probs=14.7
Q ss_pred cchhhhhhHHHHHHHHHH
Q psy16397 32 KVAHRYGDFFIRKIIKFE 49 (60)
Q Consensus 32 k~~rry~d~Flr~i~K~~ 49 (60)
...+||.|||.+|+..|+
T Consensus 118 e~~~Rf~dWfShHLSNF~ 135 (190)
T d1h2vc2 118 TCVDRFINWFSHHLSNFQ 135 (190)
T ss_dssp HHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhhccc
Confidence 456899999999988764
No 5
>d2qqra2 b.34.9.1 (A:956-1011) Jumonji domain-containing protein 2A {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.56 E-value=2.9 Score=21.80 Aligned_cols=14 Identities=7% Similarity=0.138 Sum_probs=11.8
Q ss_pred CccccCcccCCeee
Q psy16397 1 MRVKNQGLTEGTLT 14 (60)
Q Consensus 1 ~r~~~g~LleG~~~ 14 (60)
.||+||-+..++..
T Consensus 10 VrW~DG~~y~A~f~ 23 (56)
T d2qqra2 10 VRWTDGQVYGAKFV 23 (56)
T ss_dssp EECTTSCEEEEEEE
T ss_pred EEcCCCCEEEEEEE
Confidence 38999999999873
No 6
>d1wota_ d.218.1.5 (A:) Unnamed putative nucleotidyltransferase {Thermus thermophilus [TaxId: 274]}
Probab=34.54 E-value=4.4 Score=21.95 Aligned_cols=18 Identities=17% Similarity=0.298 Sum_probs=13.6
Q ss_pred CcccCCee--ecceeEEeeC
Q psy16397 6 QGLTEGTL--TAMLDFYIDN 23 (60)
Q Consensus 6 g~LleG~~--~sDldF~id~ 23 (60)
||...|+. .||+|+.|+.
T Consensus 32 GS~arg~~~~~SDIDi~V~~ 51 (98)
T d1wota_ 32 GSVARGEAREDSDLDLLVAF 51 (98)
T ss_dssp SHHHHTCCCTTCCCEEEECC
T ss_pred CCccCCCCCCCCCceEEEEe
Confidence 56666764 8999999864
No 7
>d1kmda_ d.189.1.1 (A:) Vam7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=29.70 E-value=6.9 Score=21.58 Aligned_cols=18 Identities=17% Similarity=0.527 Sum_probs=14.3
Q ss_pred EEEEeeccchhhhhhHHH
Q psy16397 25 MIHIADTKVAHRYGDFFI 42 (60)
Q Consensus 25 mIhI~e~k~~rry~d~Fl 42 (60)
.|++.+..+-|||.||.-
T Consensus 23 ~I~~~~~~V~RRYsdF~~ 40 (117)
T d1kmda_ 23 GVSTPNKRLYKRYSEFWK 40 (117)
T ss_dssp EEECSSCCEEECHHHHHH
T ss_pred EEEECCEEEEehHHHHHH
Confidence 567778888899999853
No 8
>d1eeja2 d.17.3.1 (A:1-60) Disulfide bond isomerase, DsbC, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=24.83 E-value=25 Score=17.51 Aligned_cols=20 Identities=20% Similarity=0.134 Sum_probs=16.9
Q ss_pred ecceeEEeeCCEEEEeeccc
Q psy16397 14 TAMLDFYIDNEMIHIADTKV 33 (60)
Q Consensus 14 ~sDldF~id~dmIhI~e~k~ 33 (60)
+.|-.|.|.|+++-|.+.++
T Consensus 40 s~dG~y~i~G~l~~l~~~~~ 59 (60)
T d1eeja2 40 TDDGKHIIQGPMYDVSGTAP 59 (60)
T ss_dssp ETTSCEEEESCEEECSSSSC
T ss_pred cCCCCEEEEeEEEEccCCCc
Confidence 77899999999998887654
No 9
>d2gtsa1 a.25.5.1 (A:4-80) Hypothetical protein HP0062 {Helicobacter pylori [TaxId: 210]}
Probab=23.60 E-value=27 Score=18.58 Aligned_cols=14 Identities=29% Similarity=0.695 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHH
Q psy16397 41 FIRKIIKFEELNKK 54 (60)
Q Consensus 41 Flr~i~K~~~~~~~ 54 (60)
|+.|+.+|.+++++
T Consensus 11 fv~hlerfkellnd 24 (77)
T d2gtsa1 11 FVGHLERFKELLRE 24 (77)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67788888888764
No 10
>d1knya2 d.218.1.1 (A:1-125) Kanamycin nucleotidyltransferase (KNTase), N-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=22.72 E-value=7 Score=22.08 Aligned_cols=17 Identities=12% Similarity=-0.011 Sum_probs=11.8
Q ss_pred CcccCCee--ecceeEEee
Q psy16397 6 QGLTEGTL--TAMLDFYID 22 (60)
Q Consensus 6 g~LleG~~--~sDldF~id 22 (60)
||.-.|+. .||+|+.|-
T Consensus 38 GS~arg~~~~~SDiDl~vv 56 (125)
T d1knya2 38 GSLGRQTDGPYSDIEMMCV 56 (125)
T ss_dssp HHHHHTCCCTTCCEEEEEE
T ss_pred CccccCCCCCCCCeEEEEE
Confidence 45555664 899998754
No 11
>d2ogka1 d.77.1.2 (A:4-144) Hypothetical protein AF2318 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=22.65 E-value=52 Score=18.70 Aligned_cols=34 Identities=12% Similarity=0.258 Sum_probs=22.2
Q ss_pred CCEEEEeeccch-hhhhhHHHHHHHHH-----HHHHHHHh
Q psy16397 23 NEMIHIADTKVA-HRYGDFFIRKIIKF-----EELNKKLQ 56 (60)
Q Consensus 23 ~dmIhI~e~k~~-rry~d~Flr~i~K~-----~~~~~~l~ 56 (60)
||-|+|-+++.. ++-...|++++.+. +++++.|.
T Consensus 45 GnpI~il~~~l~kk~~~~~~l~~l~~l~~~~~~~ll~~l~ 84 (141)
T d2ogka1 45 GNPMEYLEVELTKSSEIKKFWKNLLELLGEQAEEILSTLE 84 (141)
T ss_dssp ---CEEEEEEECSHHHHHHHHHHHHHHHGGGHHHHHHHHH
T ss_pred CCcEEEEEEEEcccHHHHHHHHHHHHhchHHHHHHHHHhH
Confidence 688899999884 55778888888764 44555553
No 12
>d2fug71 d.82.2.2 (7:3-129) NADH-quinone oxidoreductase subunit 15, Nqo15 {Thermus thermophilus [TaxId: 274]}
Probab=22.03 E-value=9.7 Score=22.50 Aligned_cols=11 Identities=27% Similarity=0.552 Sum_probs=9.0
Q ss_pred cccC-cccCCee
Q psy16397 3 VKNQ-GLTEGTL 13 (60)
Q Consensus 3 ~~~g-~LleG~~ 13 (60)
|.+| ||+||+.
T Consensus 95 ~~~G~GLvegKr 106 (127)
T d2fug71 95 YEPGKGLVTGKI 106 (127)
T ss_dssp EETTTEEESSSS
T ss_pred ecCCCceeeccC
Confidence 7787 7999983
No 13
>d2e1fa1 a.60.8.1 (A:1142-1235) Werner syndrome ATP-dependent helicase, WRN {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.09 E-value=19 Score=19.21 Aligned_cols=17 Identities=18% Similarity=0.137 Sum_probs=13.0
Q ss_pred cchhhhhhHHHHHHHHHH
Q psy16397 32 KVAHRYGDFFIRKIIKFE 49 (60)
Q Consensus 32 k~~rry~d~Flr~i~K~~ 49 (60)
+..++||+ |+.-|.++-
T Consensus 66 ~k~~kyG~-~l~~I~~~~ 82 (94)
T d2e1fa1 66 GKAAMLAP-LLEVIKHFC 82 (94)
T ss_dssp HHHHHTHH-HHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHH
Confidence 34578998 999998853
No 14
>d1vqza1 d.224.1.3 (A:242-329) LplA-like protein SP1160, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=20.10 E-value=6.3 Score=21.13 Aligned_cols=32 Identities=22% Similarity=0.302 Sum_probs=19.8
Q ss_pred ceeEEeeCCEEEEeeccchhhhhhHHHHH-HHHHHHHH
Q psy16397 16 MLDFYIDNEMIHIADTKVAHRYGDFFIRK-IIKFEELN 52 (60)
Q Consensus 16 DldF~id~dmIhI~e~k~~rry~d~Flr~-i~K~~~~~ 52 (60)
++.+-|++..| +..+-|||||-.. |+.+++.+
T Consensus 19 ev~l~V~~G~I-----~~iki~GDff~~~~i~~le~~L 51 (88)
T d1vqza1 19 EVFANVTESKI-----QDIKIYGDFFGIEDVAAVEDVL 51 (88)
T ss_dssp EEEEEEETTEE-----EEEEEEESCCCSSCTHHHHHHH
T ss_pred EEEEEEeCCEE-----EEEEEEecCCCchhHHHHHHHH
Confidence 45566667776 5667789988543 44444433
Done!