RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16397
         (60 letters)



>d2j8cm1 f.26.1.1 (M:1-303) M (medium) subunit {Rhodobacter
           sphaeroides [TaxId: 1063]}
          Length = 303

 Score = 23.1 bits (50), Expect = 2.5
 Identities = 11/38 (28%), Positives = 16/38 (42%)

Query: 11  GTLTAMLDFYIDNEMIHIADTKVAHRYGDFFIRKIIKF 48
            T+ A+  F  + E+  IAD   A      F R  + F
Sbjct: 221 ATILAVSRFGGERELEQIADRGTAAERAALFWRWTMGF 258


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.142    0.395 

Gapped
Lambda     K      H
   0.267   0.0688    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 231,424
Number of extensions: 8665
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 6
Length of query: 60
Length of database: 2,407,596
Length adjustment: 30
Effective length of query: 30
Effective length of database: 1,995,696
Effective search space: 59870880
Effective search space used: 59870880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.0 bits)