BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16398
(537 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HX8|A Chain A, Crystal Structure Of N-Terminal Domain Of Drosophila Ap180
pdb|1HX8|B Chain B, Crystal Structure Of N-Terminal Domain Of Drosophila Ap180
Length = 299
Score = 478 bits (1229), Expect = e-135, Method: Compositional matrix adjust.
Identities = 230/297 (77%), Positives = 257/297 (86%), Gaps = 11/297 (3%)
Query: 1 MAGQTINDRLLAAKHSLAGQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLA 60
MAGQTINDRLLAA+HSLAGQGLAK+VCKATTEE IGPKKKHLDYL+HC NE NVSIP LA
Sbjct: 3 MAGQTINDRLLAARHSLAGQGLAKSVCKATTEECIGPKKKHLDYLVHCANEPNVSIPHLA 62
Query: 61 TLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYLASSNCSLQLGNFLDKS------- 113
LLIER+QN++ VVV+K+LIT HHLM YGNERF QYLASSN + L +FLDK
Sbjct: 63 NLLIERSQNANWVVVYKSLITTHHLMAYGNERFMQYLASSNSTFNLSSFLDKGTVQDGGM 122
Query: 114 ----GIHGYDMTPFIHRYSRYINEKSLSYRTVAFDFCKVKRGKEDGLLRTMPANKLLKSL 169
G GYDM+PFI RY++Y+NEKSLSYR +AFDFCKVKRGKE+G LR+M A KLLK+L
Sbjct: 123 GVPGGRMGYDMSPFIRRYAKYLNEKSLSYRAMAFDFCKVKRGKEEGSLRSMNAEKLLKTL 182
Query: 170 PVLQSQIDALLEFDCNNSDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKK 229
PVLQ+Q+DALLEFDC ++DL NGVIN +FMLLFRDLIRLFA YND IINLLEKYFDMNKK
Sbjct: 183 PVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYNDGIINLLEKYFDMNKK 242
Query: 230 QCKEALDLYKKFLIRMDRVAEFLKVAENVGIDKGDIPDLTKAPSSLLEALEQHLATL 286
++ALDLYKKFL+RMDRV EFLKVAENVGIDKGDIPDLTKAPSSLL+ALEQHLATL
Sbjct: 243 HARDALDLYKKFLVRMDRVGEFLKVAENVGIDKGDIPDLTKAPSSLLDALEQHLATL 299
>pdb|1HF8|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein
pdb|1HFA|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Pi(4,5)p2 Complex
pdb|1HG5|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Inositol(1,2,3,4,5,6)p6
Complex
pdb|1HG2|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Inositol(4,5)p2 Complex
Length = 289
Score = 442 bits (1138), Expect = e-124, Method: Compositional matrix adjust.
Identities = 203/290 (70%), Positives = 244/290 (84%), Gaps = 1/290 (0%)
Query: 1 MAGQTINDRLLAAKHSLAGQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLA 60
M+GQ++ DR+ AA+HS+ G ++K VCKATT E++GPKKKHLDYL+ CTNE NV+IP LA
Sbjct: 1 MSGQSLTDRITAAQHSVTGSAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLA 60
Query: 61 TLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYLASSNCSLQLGNFLDKSGIHGYDM 120
L ERT NSS VVVFK+LIT HHLM YGNERF QYLAS N L NFLDKSG+ GYDM
Sbjct: 61 DSLFERTTNSSWVVVFKSLITTHHLMVYGNERFIQYLASRNTLFNLSNFLDKSGLQGYDM 120
Query: 121 TPFIHRYSRYINEKSLSYRTVAFDFCKVKRGKEDGLLRTMPANKLLKSLPVLQSQIDALL 180
+ FI RYSRY+NEK++SYR VAFDF KVKRG DG++RTM KLLK++P++Q+Q+DALL
Sbjct: 121 STFIRRYSRYLNEKAVSYRQVAFDFTKVKRG-ADGVMRTMNTEKLLKTVPIIQNQMDALL 179
Query: 181 EFDCNNSDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKKQCKEALDLYKK 240
+F+ N+++L NGVIN AFMLLF+D IRLFA YN+ IINLLEKYFDM K QCKE LD+YKK
Sbjct: 180 DFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKK 239
Query: 241 FLIRMDRVAEFLKVAENVGIDKGDIPDLTKAPSSLLEALEQHLATLEGKK 290
FL RM R++EFLKVAE VGID+GDIPDL++APSSLL+ALEQHLA+LEGKK
Sbjct: 240 FLTRMTRISEFLKVAEQVGIDRGDIPDLSQAPSSLLDALEQHLASLEGKK 289
>pdb|3ZYK|A Chain A, Structure Of Calm (Picalm) Anth Domain
pdb|3ZYK|B Chain B, Structure Of Calm (Picalm) Anth Domain
Length = 296
Score = 442 bits (1136), Expect = e-124, Method: Compositional matrix adjust.
Identities = 203/290 (70%), Positives = 244/290 (84%), Gaps = 1/290 (0%)
Query: 1 MAGQTINDRLLAAKHSLAGQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLA 60
M+GQ++ DR+ AA+HS+ G ++K VCKATT E++GPKKKHLDYL+ CTNE NV+IP LA
Sbjct: 8 MSGQSLTDRITAAQHSVTGSAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLA 67
Query: 61 TLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYLASSNCSLQLGNFLDKSGIHGYDM 120
L ERT NSS VVVFK+LIT HHLM YGNERF QYLAS N L NFLDKSG+ GYDM
Sbjct: 68 DSLFERTTNSSWVVVFKSLITTHHLMVYGNERFIQYLASRNTLFNLSNFLDKSGLQGYDM 127
Query: 121 TPFIHRYSRYINEKSLSYRTVAFDFCKVKRGKEDGLLRTMPANKLLKSLPVLQSQIDALL 180
+ FI RYSRY+NEK++SYR VAFDF KVKRG DG++RTM KLLK++P++Q+Q+DALL
Sbjct: 128 STFIRRYSRYLNEKAVSYRQVAFDFTKVKRG-ADGVMRTMNTEKLLKTVPIIQNQMDALL 186
Query: 181 EFDCNNSDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKKQCKEALDLYKK 240
+F+ N+++L NGVIN AFMLLF+D IRLFA YN+ IINLLEKYFDM K QCKE LD+YKK
Sbjct: 187 DFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKK 246
Query: 241 FLIRMDRVAEFLKVAENVGIDKGDIPDLTKAPSSLLEALEQHLATLEGKK 290
FL RM R++EFLKVAE VGID+GDIPDL++APSSLL+ALEQHLA+LEGKK
Sbjct: 247 FLTRMTRISEFLKVAEQVGIDRGDIPDLSQAPSSLLDALEQHLASLEGKK 296
>pdb|3ZYM|A Chain A, Structure Of Calm (Picalm) In Complex With Vamp8
pdb|3ZYM|B Chain B, Structure Of Calm (Picalm) In Complex With Vamp8
pdb|3ZYM|C Chain C, Structure Of Calm (Picalm) In Complex With Vamp8
Length = 310
Score = 400 bits (1028), Expect = e-111, Method: Compositional matrix adjust.
Identities = 182/266 (68%), Positives = 219/266 (82%), Gaps = 1/266 (0%)
Query: 1 MAGQTINDRLLAAKHSLAGQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLA 60
M+GQ++ DR+ AA+HS+ G ++K VCKATT E++GPKKKHLDYL+ CTNE NV+IP LA
Sbjct: 8 MSGQSLTDRITAAQHSVTGSAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLA 67
Query: 61 TLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYLASSNCSLQLGNFLDKSGIHGYDM 120
L ERT NSS VVVFK+LIT HHLM YGNERF QYLAS N L NFLDKSG+ GYDM
Sbjct: 68 DSLFERTTNSSWVVVFKSLITTHHLMVYGNERFIQYLASRNTLFNLSNFLDKSGLQGYDM 127
Query: 121 TPFIHRYSRYINEKSLSYRTVAFDFCKVKRGKEDGLLRTMPANKLLKSLPVLQSQIDALL 180
+ FI RYSRY+NEK++SYR VAFDF KVKRG DG++RTM KLLK++P++Q+Q+DALL
Sbjct: 128 STFIRRYSRYLNEKAVSYRQVAFDFTKVKRG-ADGVMRTMNTEKLLKTVPIIQNQMDALL 186
Query: 181 EFDCNNSDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKKQCKEALDLYKK 240
+F+ N+++L NGVIN AFMLLF+D IRLFA YN+ IINLLEKYFDM K QCKE LD+YKK
Sbjct: 187 DFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKK 246
Query: 241 FLIRMDRVAEFLKVAENVGIDKGDIP 266
FL RM R++EFLKVAE VGID+GDI
Sbjct: 247 FLTRMTRISEFLKVAEQVGIDRGDIS 272
>pdb|3ZYL|A Chain A, Structure Of A Truncated Calm (Picalm) Anth Domain
pdb|3ZYL|B Chain B, Structure Of A Truncated Calm (Picalm) Anth Domain
Length = 271
Score = 399 bits (1025), Expect = e-111, Method: Compositional matrix adjust.
Identities = 182/265 (68%), Positives = 219/265 (82%), Gaps = 1/265 (0%)
Query: 1 MAGQTINDRLLAAKHSLAGQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLA 60
M+GQ++ DR+ AA+HS+ G ++K VCKATT E++GPKKKHLDYL+ CTNE NV+IP LA
Sbjct: 8 MSGQSLTDRITAAQHSVTGSAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLA 67
Query: 61 TLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYLASSNCSLQLGNFLDKSGIHGYDM 120
L ERT NSS VVVFK+LIT HHLM YGNERF QYLAS N L NFLDKSG+ GYDM
Sbjct: 68 DSLFERTTNSSWVVVFKSLITTHHLMVYGNERFIQYLASRNTLFNLSNFLDKSGLQGYDM 127
Query: 121 TPFIHRYSRYINEKSLSYRTVAFDFCKVKRGKEDGLLRTMPANKLLKSLPVLQSQIDALL 180
+ FI RYSRY+NEK++SYR VAFDF KVKRG DG++RTM KLLK++P++Q+Q+DALL
Sbjct: 128 STFIRRYSRYLNEKAVSYRQVAFDFTKVKRG-ADGVMRTMNTEKLLKTVPIIQNQMDALL 186
Query: 181 EFDCNNSDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKKQCKEALDLYKK 240
+F+ N+++L NGVIN AFMLLF+D IRLFA YN+ IINLLEKYFDM K QCKE LD+YKK
Sbjct: 187 DFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKK 246
Query: 241 FLIRMDRVAEFLKVAENVGIDKGDI 265
FL RM R++EFLKVAE VGID+GDI
Sbjct: 247 FLTRMTRISEFLKVAEQVGIDRGDI 271
>pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
pdb|3NX3|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
Length = 395
Score = 35.0 bits (79), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 11/72 (15%)
Query: 120 MTPFIHRYSRYINEKSLSYRTVAFDFCKVKRGKEDGLLRTMPANKLLKSLPVLQ-SQIDA 178
+TP++ E+SL FDFCK ++G G + + +K +K V+Q Q +A
Sbjct: 308 LTPYL--------EQSLDELINEFDFCKKRKGL--GFXQGLSLDKSVKVAKVIQKCQENA 357
Query: 179 LLEFDCNNSDLR 190
LL C +DLR
Sbjct: 358 LLLISCGENDLR 369
>pdb|3U84|A Chain A, Crystal Structure Of Human Menin
pdb|3U84|B Chain B, Crystal Structure Of Human Menin
pdb|3U85|A Chain A, Crystal Structure Of Human Menin In Complex With Mll1
pdb|3U86|A Chain A, Crystal Structure Of Human Menin In Complex With Jund
pdb|3U88|A Chain A, Crystal Structure Of Human Menin In Complex With Mll1 And
Ledgf
pdb|3U88|B Chain B, Crystal Structure Of Human Menin In Complex With Mll1 And
Ledgf
Length = 550
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 29/104 (27%)
Query: 209 FAGY---NDSIINLLEKYFD-----MNKKQCKEALDLYKKFLIRMDRVAEFLKVAENVGI 260
AGY N ++ L+ + D + C+E ++YK EF +VA +V
Sbjct: 324 LAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYK----------EFFEVANDV-- 371
Query: 261 DKGDIPDLTKAPSSLLEALEQHLATLEGKKSAAGTPTQASHRND 304
IP+L K +SLLEA E+ G++S GT +Q S D
Sbjct: 372 ----IPNLLKEAASLLEAGEER----PGEQS-QGTQSQGSALQD 406
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 110 LDKSGIHGYDMTPFIHRYSRYINEKSLSYRTVAFDFC-KVKRGKEDGLLRTMPANKLLKS 168
L +S H +DM +I+R++ I +S V +DF K+KR E+ L + + KS
Sbjct: 148 LIESYCHTFDMQAWIYRFANVIGRRST--HGVIYDFIMKLKRNPEE--LEILGNGEQNKS 203
Query: 169 LPVLQSQIDALL 180
+ +DA+L
Sbjct: 204 YIYISDCVDAML 215
>pdb|2OHF|A Chain A, Crystal Structure Of Human Ola1 In Complex With Amppcp
Length = 396
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 3/103 (2%)
Query: 206 IRLFAGYNDSIINLLEKYFDMNKKQCKEALDLYKKFLIRMDRVAEFLKVAENVGIDKGDI 265
+R + +ND I +L K+ + K ++L +K IR + +K+ E V DK D
Sbjct: 200 VRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYIR-KKNKWLIKIKEWV--DKYDP 256
Query: 266 PDLTKAPSSLLEALEQHLATLEGKKSAAGTPTQASHRNDVKSG 308
L S LE Q L+ E +K TQ++ +K+G
Sbjct: 257 GALVIPFSGALELKLQELSAEERQKYLEANMTQSALPKIIKAG 299
>pdb|4ACQ|A Chain A, Alpha-2 Macroglobulin
pdb|4ACQ|B Chain B, Alpha-2 Macroglobulin
pdb|4ACQ|C Chain C, Alpha-2 Macroglobulin
pdb|4ACQ|D Chain D, Alpha-2 Macroglobulin
Length = 1451
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 27/130 (20%)
Query: 30 TTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNSSSVVVFKALITIHHLMCYG 89
T EE + PK E V++P + T+L E +++ L YG
Sbjct: 197 TVEEFVLPK-----------FEVQVTVPKIITILEEEMN-----------VSVCGLYTYG 234
Query: 90 NERFTQYLASSNCSLQLGNFLDKSGIHGYDMTPFIHRYSRYINEKSLSYRTVAFDFCKVK 149
+ ++ S C + D S HG D F ++S +N Y+ V ++K
Sbjct: 235 -KPVPGHVTVSICR----KYSDASDCHGEDSQAFCEKFSGQLNSHGCFYQQVKTKVFQLK 289
Query: 150 RGKEDGLLRT 159
R + + L T
Sbjct: 290 RKEYEMKLHT 299
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,787,058
Number of Sequences: 62578
Number of extensions: 662134
Number of successful extensions: 1536
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1526
Number of HSP's gapped (non-prelim): 11
length of query: 537
length of database: 14,973,337
effective HSP length: 103
effective length of query: 434
effective length of database: 8,527,803
effective search space: 3701066502
effective search space used: 3701066502
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)