BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16398
(537 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VI75|PICA_DROME Phosphatidylinositol-binding clathrin assembly protein LAP
OS=Drosophila melanogaster GN=lap PE=1 SV=3
Length = 468
Score = 572 bits (1475), Expect = e-162, Method: Compositional matrix adjust.
Identities = 300/429 (69%), Positives = 340/429 (79%), Gaps = 28/429 (6%)
Query: 1 MAGQTINDRLLAAKHSLAGQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLA 60
MAGQTINDRLLAA+HSLAGQGLAK+VCKATTEE IGPKKKHLDYL+HCTNE NVSIP LA
Sbjct: 3 MAGQTINDRLLAARHSLAGQGLAKSVCKATTEECIGPKKKHLDYLVHCTNEPNVSIPHLA 62
Query: 61 TLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYLASSNCSLQLGNFLDKS------- 113
LLIER+QN++ VVV+K+LIT HHLM YGNERF QYLASSN + L +FLDK
Sbjct: 63 NLLIERSQNANWVVVYKSLITTHHLMAYGNERFMQYLASSNSTFNLSSFLDKGTVQDGGM 122
Query: 114 ----GIHGYDMTPFIHRYSRYINEKSLSYRTVAFDFCKVKRGKEDGLLRTMPANKLLKSL 169
G GYDM+PFI RY++Y+NEKSLSYR +AFDFCKVKRGKE+G LR+M A KLLK+L
Sbjct: 123 GVPGGRMGYDMSPFIRRYAKYLNEKSLSYRAMAFDFCKVKRGKEEGSLRSMNAEKLLKTL 182
Query: 170 PVLQSQIDALLEFDCNNSDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKK 229
PVLQ+Q+DALLEFDC ++DL NGVIN +FMLLFRDLIRLFA YND IINLLEKYFDMNKK
Sbjct: 183 PVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYNDGIINLLEKYFDMNKK 242
Query: 230 QCKEALDLYKKFLIRMDRVAEFLKVAENVGIDKGDIPDLTKAPSSLLEALEQHLATLEGK 289
++ALDLYKKFL+RMDRV EFLKVAENVGIDKGDIPDLTKAPSSLL+ALEQHLATLEG+
Sbjct: 243 HARDALDLYKKFLVRMDRVGEFLKVAENVGIDKGDIPDLTKAPSSLLDALEQHLATLEGR 302
Query: 290 K-SAAGTPTQASHRNDVKSGVNSFSTTSSAFSAVSGADLEESLKKQALAEEEAILNQYKA 348
K SAA TPTQ+S S + SS F +G D E LK Q LAEEEA +NQYK+
Sbjct: 303 KVSAANTPTQSS------SSAFGTAAASSKFDTTNGID--EQLKAQVLAEEEAAMNQYKS 354
Query: 349 KVSSPTSSMPSNAAS--TNPFLASP-----TQPIVDLFG-SAPASVEPVQTSKPSDDLLQ 400
KVSSPTSS + A++ TNPFL+SP QPIVDLFG ++ +K SDDLLQ
Sbjct: 355 KVSSPTSSGAAGASAALTNPFLSSPPAAQAGQPIVDLFGAASAQPAAAAAATKASDDLLQ 414
Query: 401 LGNPFVDDF 409
LGNPF D F
Sbjct: 415 LGNPFADMF 423
>sp|Q13492|PICAL_HUMAN Phosphatidylinositol-binding clathrin assembly protein OS=Homo
sapiens GN=PICALM PE=1 SV=2
Length = 652
Score = 460 bits (1184), Expect = e-128, Method: Compositional matrix adjust.
Identities = 237/413 (57%), Positives = 297/413 (71%), Gaps = 23/413 (5%)
Query: 1 MAGQTINDRLLAAKHSLAGQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLA 60
M+GQ++ DR+ AA+HS+ G ++K VCKATT E++GPKKKHLDYL+ CTNE NV+IP LA
Sbjct: 1 MSGQSLTDRITAAQHSVTGSAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLA 60
Query: 61 TLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYLASSNCSLQLGNFLDKSGIHGYDM 120
L ERT NSS VVVFK+LIT HHLM YGNERF QYLAS N L NFLDKSG+ GYDM
Sbjct: 61 DSLFERTTNSSWVVVFKSLITTHHLMVYGNERFIQYLASRNTLFNLSNFLDKSGLQGYDM 120
Query: 121 TPFIHRYSRYINEKSLSYRTVAFDFCKVKRGKEDGLLRTMPANKLLKSLPVLQSQIDALL 180
+ FI RYSRY+NEK++SYR VAFDF KVKRG DG++RTM KLLK++P++Q+Q+DALL
Sbjct: 121 STFIRRYSRYLNEKAVSYRQVAFDFTKVKRG-ADGVMRTMNTEKLLKTVPIIQNQMDALL 179
Query: 181 EFDCNNSDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKKQCKEALDLYKK 240
+F+ N+++L NGVIN AFMLLF+D IRLFA YN+ IINLLEKYFDM K QCKE LD+YKK
Sbjct: 180 DFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKK 239
Query: 241 FLIRMDRVAEFLKVAENVGIDKGDIPDLTKAPSSLLEALEQHLATLEGKKSAAGTPTQAS 300
FL RM R++EFLKVAE VGID+GDIPDL++APSSLL+ALEQHLA+LEGKK T AS
Sbjct: 240 FLTRMTRISEFLKVAEQVGIDRGDIPDLSQAPSSLLDALEQHLASLEGKK--IKDSTAAS 297
Query: 301 HRNDVKSGVNSFSTTSSAFSAVSGADLEESLKKQALAEEEAILNQYKAKVSSPTSSMPSN 360
+ + V+S ++T + + V +E K+ AL EE+A L K + + P
Sbjct: 298 RATTLSNAVSSLASTGLSLTKV-----DEREKQAALEEEQARLKALKEQRLKELAKKPHT 352
Query: 361 AASTNPFLASP---------TQPIVDLFGSAPASVEPVQTSKPSDDLLQLGNP 404
+ +T ASP T P +D+F + +S TSK +DLL L P
Sbjct: 353 SLTT---AASPVSTSAGGIMTAPAIDIFSTPSSS---NSTSKLPNDLLDLQQP 399
>sp|Q7M6Y3|PICA_MOUSE Phosphatidylinositol-binding clathrin assembly protein OS=Mus
musculus GN=Picalm PE=1 SV=1
Length = 660
Score = 460 bits (1183), Expect = e-128, Method: Compositional matrix adjust.
Identities = 237/413 (57%), Positives = 297/413 (71%), Gaps = 23/413 (5%)
Query: 1 MAGQTINDRLLAAKHSLAGQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLA 60
M+GQ++ DR+ AA+HS+ G ++K VCKATT E++GPKKKHLDYL+ CTNE NV+IP LA
Sbjct: 1 MSGQSLTDRITAAQHSVTGSAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLA 60
Query: 61 TLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYLASSNCSLQLGNFLDKSGIHGYDM 120
L ERT NSS VVVFK+LIT HHLM YGNERF QYLAS N L NFLDKSG+ GYDM
Sbjct: 61 DSLFERTTNSSWVVVFKSLITTHHLMVYGNERFIQYLASRNTLFNLSNFLDKSGLQGYDM 120
Query: 121 TPFIHRYSRYINEKSLSYRTVAFDFCKVKRGKEDGLLRTMPANKLLKSLPVLQSQIDALL 180
+ FI RYSRY+NEK++SYR VAFDF KVKRG DG++RTM KLLK++P++Q+Q+DALL
Sbjct: 121 STFIRRYSRYLNEKAVSYRQVAFDFTKVKRG-ADGVMRTMNTEKLLKTVPIIQNQMDALL 179
Query: 181 EFDCNNSDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKKQCKEALDLYKK 240
+F+ N+++L NGVIN AFMLLF+D IRLFA YN+ IINLLEKYFDM K QCKE LD+YKK
Sbjct: 180 DFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKK 239
Query: 241 FLIRMDRVAEFLKVAENVGIDKGDIPDLTKAPSSLLEALEQHLATLEGKKSAAGTPTQAS 300
FL RM R++EFLKVAE VGID+GDIPDL++APSSLL+ALEQHLA+LEGKK T AS
Sbjct: 240 FLTRMTRISEFLKVAEQVGIDRGDIPDLSQAPSSLLDALEQHLASLEGKK--IKDSTAAS 297
Query: 301 HRNDVKSGVNSFSTTSSAFSAVSGADLEESLKKQALAEEEAILNQYKAKVSSPTSSMPSN 360
+ + V+S ++T + + V +E K+ AL EE+A L K + + P
Sbjct: 298 RATTLSNAVSSLASTGLSLTKV-----DEREKQAALEEEQARLKALKEQRLKELAKKPHT 352
Query: 361 AASTNPFLASP---------TQPIVDLFGSAPASVEPVQTSKPSDDLLQLGNP 404
+ +T ASP T P +D+F + +S TSK +DLL L P
Sbjct: 353 SLTT---AASPVSTSAGGIMTAPAIDIFSTPSSS---NSTSKLPNDLLDLQQP 399
>sp|O55012|PICA_RAT Phosphatidylinositol-binding clathrin assembly protein OS=Rattus
norvegicus GN=Picalm PE=1 SV=1
Length = 640
Score = 460 bits (1183), Expect = e-128, Method: Compositional matrix adjust.
Identities = 241/434 (55%), Positives = 304/434 (70%), Gaps = 25/434 (5%)
Query: 1 MAGQTINDRLLAAKHSLAGQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLA 60
M+GQ++ DR+ AA+HS+ G ++K VCKATT E++GPKKKHLDYL+ CTNE NV+IP LA
Sbjct: 1 MSGQSLTDRITAAQHSVTGSAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLA 60
Query: 61 TLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYLASSNCSLQLGNFLDKSGIHGYDM 120
L ERT NSS VVVFK+LIT HHLM YGNERF QYLAS N L NFLDKSG+ GYDM
Sbjct: 61 DSLFERTTNSSWVVVFKSLITTHHLMVYGNERFIQYLASRNTLFNLSNFLDKSGLQGYDM 120
Query: 121 TPFIHRYSRYINEKSLSYRTVAFDFCKVKRGKEDGLLRTMPANKLLKSLPVLQSQIDALL 180
+ FI RYSRY+NEK++SYR VAFDF KVKRG DG++RTM KLLK++P++Q+Q+DALL
Sbjct: 121 STFIRRYSRYLNEKAVSYRQVAFDFTKVKRG-ADGVMRTMNTEKLLKTVPIIQNQMDALL 179
Query: 181 EFDCNNSDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKKQCKEALDLYKK 240
+F+ N+++L NGVIN AFMLLF+D IRLFA YN+ IINLLEKYFDM K QCKE LD+YKK
Sbjct: 180 DFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKK 239
Query: 241 FLIRMDRVAEFLKVAENVGIDKGDIPDLTKAPSSLLEALEQHLATLEGKKSAAGTPTQAS 300
FL RM R++EFLKVAE VGID+GDIPDL++APSSLL+ALEQHLA+LEGKK T AS
Sbjct: 240 FLTRMTRISEFLKVAEQVGIDRGDIPDLSQAPSSLLDALEQHLASLEGKK--IKDSTAAS 297
Query: 301 HRNDVKSGVNSFSTTSSAFSAVSGADLEESLKKQALAEEEAILNQYKAKVSSPTSSMPSN 360
+ + V+S ++T + + V +E K+ AL EE+A L K + + P
Sbjct: 298 RATTLSNAVSSLASTGLSLTKV-----DEREKQAALEEEQARLKALKEQRLKELAKKPHT 352
Query: 361 AASTNPFLASP---------TQPIVDLFGSAPASVEPVQTSKPSDDLLQLGNPFVDDFTG 411
+ +T ASP T P +D+F + +S TSK +DLL L P
Sbjct: 353 SLTT---AASPVSTSAGGIMTAPAIDIFSTPSSSNS---TSKLPNDLLDLQQPTFHPSVH 406
Query: 412 AAAPGSQPPVNNAW 425
A + + P V + W
Sbjct: 407 AMS--AAPQVASTW 418
>sp|O60641|AP180_HUMAN Clathrin coat assembly protein AP180 OS=Homo sapiens GN=SNAP91 PE=1
SV=2
Length = 907
Score = 449 bits (1155), Expect = e-125, Method: Compositional matrix adjust.
Identities = 232/401 (57%), Positives = 276/401 (68%), Gaps = 49/401 (12%)
Query: 1 MAGQTINDRLLAAKHSLAGQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLA 60
M+GQT+ DR+ AA++S+ G +A+AVCKATT E++GPKKKHLDYL+ TNE NV+IP +A
Sbjct: 1 MSGQTLTDRIAAAQYSVTGSAVARAVCKATTHEVMGPKKKHLDYLIQATNETNVNIPQMA 60
Query: 61 TLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYLASSNCSLQLGNFLDKSGIHGYDM 120
L ER NSS VVVFKAL+T HHLM +GNERF QYLAS N L NFLDKSG HGYDM
Sbjct: 61 DTLFERATNSSWVVVFKALVTTHHLMVHGNERFIQYLASRNTLFNLSNFLDKSGSHGYDM 120
Query: 121 TPFIHRYSRYINEKSLSYRTVAFDFCKVKRGKEDGLLRTMPANKLLKSLPVLQSQIDALL 180
+ FI RYSRY+NEK+ SYR +AFDF +VK+G DG++RTM KLLKS+P+LQ QIDALL
Sbjct: 121 STFIRRYSRYLNEKAFSYRQMAFDFARVKKGA-DGVMRTMAPEKLLKSMPILQGQIDALL 179
Query: 181 EFDCNNSDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKKQCKEALDLYKK 240
EFD + ++L NGVIN AFMLLF+DLI+LFA YND +INLLEK+F+M K QCK+AL++YK+
Sbjct: 180 EFDVHPNELTNGVINAAFMLLFKDLIKLFACYNDGVINLLEKFFEMKKGQCKDALEIYKR 239
Query: 241 FLIRMDRVAEFLKVAENVGIDKGDIPDLTKAPSSLLEALEQHLATLEGKKSAAGTPTQAS 300
FL RM RV+EFLKVAE VGIDKGDIPDLT+APSSL+E LEQHL TLEGK
Sbjct: 240 FLTRMTRVSEFLKVAEQVGIDKGDIPDLTQAPSSLMETLEQHLNTLEGK----------- 288
Query: 301 HRNDVKSGVNSFSTTSSAFSAVSGADLEESLKKQALAEEEAILNQYKAKVSSPTSSMPSN 360
K G N S S S S A V+SP S+
Sbjct: 289 -----KPGNNEGSGAPSPLSKSSPA----------------------TTVTSPNST---- 317
Query: 361 AASTNPFLASPTQPIVDLFGSAPASVEPVQTSKPSDDLLQL 401
P T P VDLF +A A+V PV TSKPS DLL L
Sbjct: 318 -----PAKTIDTSPPVDLFATASAAV-PVSTSKPSSDLLDL 352
>sp|Q9XZI6|PICA_CAEEL Phosphatidylinositol-binding clathrin assembly protein unc-11
OS=Caenorhabditis elegans GN=unc-11 PE=1 SV=1
Length = 586
Score = 445 bits (1145), Expect = e-124, Method: Compositional matrix adjust.
Identities = 239/426 (56%), Positives = 299/426 (70%), Gaps = 29/426 (6%)
Query: 3 GQTINDRLLAAKHSLAGQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATL 62
GQTI+DRL AAKHSLAG L K +CKATTEE++ PKKKHLDYLLHCTNE NVSIP +A L
Sbjct: 18 GQTISDRLTAAKHSLAGSQLGKTICKATTEEVMAPKKKHLDYLLHCTNEPNVSIPSMANL 77
Query: 63 LIERTQNSSSVVVFKALITIHHLMCYGNERFTQYLASSNCSLQLGNFLDK-SGIHGYDMT 121
LIERTQN + VV+KALITIH++MCYGNERF+QYLAS N + L F+DK G GYDM+
Sbjct: 78 LIERTQNPNWTVVYKALITIHNIMCYGNERFSQYLASCNTTFNLTAFVDKVGGAGGYDMS 137
Query: 122 PFIHRYSRYINEKSLSYRTVAFDFCKVKRGKEDGLLRTMPANKLLKSLPVLQSQIDALLE 181
+ RY++YI EK +YR AFDFCKVKRG+EDGLLRTM +KLLK++P+LQ+QIDALLE
Sbjct: 138 THVRRYAKYIGEKINTYRMCAFDFCKVKRGREDGLLRTMHTDKLLKTIPILQNQIDALLE 197
Query: 182 FDCNNSDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKKQCKEALDLYKKF 241
F S+L NGVIN +F+LLFRDLIRLFA YND IIN+LEKYFDMNKKQC++ALD YK F
Sbjct: 198 FSVTTSELNNGVINCSFILLFRDLIRLFACYNDGIINVLEKYFDMNKKQCRDALDTYKSF 257
Query: 242 LIRMDRVAEFLKVAENVGIDKGDIPDLTKAPSSLLEALEQHLATLEGKKSAAGTPTQ--- 298
L R+D+VAEFL+VAE+VGID+G+IPDLT+AP+SLLEALE HL LEG K A PTQ
Sbjct: 258 LTRLDKVAEFLRVAESVGIDRGEIPDLTRAPASLLEALEAHLIHLEGGK--APPPTQQHV 315
Query: 299 ASHRNDVKSGVNSFSTTSSAFSAVSGADLEESLKKQALAEEEAILNQYKAKVSSPTSSMP 358
A H+ TT AFS L ++ +++ + E+ L Q++ + S S+ P
Sbjct: 316 APHQ----------FTTGFAFSQQPQPALGDAERQRYIELEQERLRQFEDQKKSINSANP 365
Query: 359 ---SNAASTNPFLASPTQP-IVDLFGSAPASVEPVQTSKPSDDLLQLGNPFVDDFTGAAA 414
A++ S QP ++D+F S+ A P+ + NPF + +A
Sbjct: 366 FANDVASAAPAPATSAAQPDLLDMFQSSAA---------PAPQTADVTNPFGNFAAPSAF 416
Query: 415 PGSQPP 420
P + PP
Sbjct: 417 PTNVPP 422
>sp|Q61548|AP180_MOUSE Clathrin coat assembly protein AP180 OS=Mus musculus GN=Snap91 PE=1
SV=1
Length = 901
Score = 439 bits (1128), Expect = e-122, Method: Compositional matrix adjust.
Identities = 200/290 (68%), Positives = 240/290 (82%), Gaps = 1/290 (0%)
Query: 1 MAGQTINDRLLAAKHSLAGQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLA 60
M+GQT+ DR+ AA++S+ G +A+AVCKATT E++GPKKKHLDYL+ TNE NV+IP +A
Sbjct: 1 MSGQTLTDRIAAAQYSVTGSAVARAVCKATTHEVMGPKKKHLDYLIQATNETNVNIPQMA 60
Query: 61 TLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYLASSNCSLQLGNFLDKSGIHGYDM 120
L ER NSS VVVFKAL+T HHLM +GNERF QYLAS N L NFLDKSG HGYDM
Sbjct: 61 DTLFERATNSSWVVVFKALVTTHHLMVHGNERFIQYLASRNTLFNLSNFLDKSGSHGYDM 120
Query: 121 TPFIHRYSRYINEKSLSYRTVAFDFCKVKRGKEDGLLRTMPANKLLKSLPVLQSQIDALL 180
+ FI RYSRY+NEK+ SYR +AFDF +VK+G DG++RTM KLLKS+P+LQ QIDALL
Sbjct: 121 STFIRRYSRYLNEKAFSYRQMAFDFARVKKGA-DGVMRTMVPEKLLKSMPILQGQIDALL 179
Query: 181 EFDCNNSDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKKQCKEALDLYKK 240
EFD + ++L NGVIN AFMLLF+DLI+LFA YND +INLLEK+F+M K QCK+AL++YK+
Sbjct: 180 EFDVHPNELTNGVINAAFMLLFKDLIKLFACYNDGVINLLEKFFEMKKGQCKDALEIYKR 239
Query: 241 FLIRMDRVAEFLKVAENVGIDKGDIPDLTKAPSSLLEALEQHLATLEGKK 290
FL RM RV+EFLKVAE VGIDKGDIPDLT+APSSL+E LEQHL TLEGKK
Sbjct: 240 FLTRMTRVSEFLKVAEQVGIDKGDIPDLTQAPSSLMETLEQHLNTLEGKK 289
>sp|Q05140|AP180_RAT Clathrin coat assembly protein AP180 OS=Rattus norvegicus GN=Snap91
PE=1 SV=1
Length = 915
Score = 437 bits (1125), Expect = e-122, Method: Compositional matrix adjust.
Identities = 199/290 (68%), Positives = 240/290 (82%), Gaps = 1/290 (0%)
Query: 1 MAGQTINDRLLAAKHSLAGQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLA 60
M+GQT+ DR+ AA++S+ G +A+AVCKATT E++GPKKKHLDYL+ TNE NV+IP +A
Sbjct: 1 MSGQTLTDRIAAAQYSVTGSAVARAVCKATTHEVMGPKKKHLDYLIQATNETNVNIPQMA 60
Query: 61 TLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYLASSNCSLQLGNFLDKSGIHGYDM 120
L ER NSS VVVFKAL+T HHLM +GNERF QYLAS N L NFLDKSG HGYDM
Sbjct: 61 DTLFERATNSSWVVVFKALVTTHHLMVHGNERFIQYLASRNTLFNLSNFLDKSGSHGYDM 120
Query: 121 TPFIHRYSRYINEKSLSYRTVAFDFCKVKRGKEDGLLRTMPANKLLKSLPVLQSQIDALL 180
+ FI RYSRY+NEK+ SYR +AFDF +VK+G DG++RTM KLLKS+P+LQ QIDALL
Sbjct: 121 STFIRRYSRYLNEKAFSYRQMAFDFARVKKGA-DGVMRTMVPEKLLKSMPILQGQIDALL 179
Query: 181 EFDCNNSDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKKQCKEALDLYKK 240
EFD + ++L NGVIN AFMLLF+DLI+LFA YND +INLLEK+F+M K QCK+AL++YK+
Sbjct: 180 EFDVHPNELTNGVINAAFMLLFKDLIKLFACYNDGVINLLEKFFEMKKGQCKDALEIYKR 239
Query: 241 FLIRMDRVAEFLKVAENVGIDKGDIPDLTKAPSSLLEALEQHLATLEGKK 290
FL RM RV+EFLKVA+ VGIDKGDIPDLT+APSSL+E LEQHL TLEGKK
Sbjct: 240 FLTRMTRVSEFLKVADEVGIDKGDIPDLTQAPSSLMETLEQHLNTLEGKK 289
>sp|O60167|YHC3_SCHPO ENTH domain-containing protein C19F8.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC19F8.03c PE=1
SV=1
Length = 649
Score = 119 bits (299), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 135/261 (51%), Gaps = 5/261 (1%)
Query: 24 KAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNSSSVVVFKALITIH 83
+AV KAT +L PK KH++ +L T E ++ ++ L ER + S +VFK LI H
Sbjct: 12 RAVKKATKVKLAAPKYKHVEIILEATTEDPETLENVIQALCERLKEQSWTIVFKTLIVFH 71
Query: 84 HLMCYGNERFTQYLASSNCSLQLGNFLDKSGIHGYDMTPFIHRYSRYINEKSLSYRTVAF 143
++ G T + + + ++ L S + I+ YSR+++E++ Y +
Sbjct: 72 VMLKEGAPNTT--IVALSQRPRILEVLKASSLLAQGKN--IYNYSRFLSERAKQYGRLGV 127
Query: 144 DFCKVKRGKEDGLLRTMPANKLLKSLPVLQSQIDALLEFDCNNSDLRNGVINGAFMLLFR 203
D+ +V + + N LL+++ +Q+Q+ L++ ++ N + AF LL
Sbjct: 128 DYAQVGDAPKKKIREMKLENGLLRNVEGIQAQLRRLIKCQFVAEEIDNDIAITAFRLLVG 187
Query: 204 DLIRLFAGYNDSIINLLEKYFDMNKKQCKEALDLYKKFLIRMDRVAEFLKVAENVG-IDK 262
DL+ LF N +IN+LE YF+M ++L +YK F+ + + + +L A ++ + K
Sbjct: 188 DLLVLFKAVNIGVINVLEHYFEMGHHDAAQSLRIYKTFVNQTEDIINYLSTARSLEFVTK 247
Query: 263 GDIPDLTKAPSSLLEALEQHL 283
+P++ AP SL +LE++L
Sbjct: 248 FPVPNIKHAPISLTASLEEYL 268
>sp|P53309|AP18B_YEAST Clathrin coat assembly protein AP180B OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YAP1802 PE=1 SV=1
Length = 568
Score = 113 bits (282), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 142/282 (50%), Gaps = 17/282 (6%)
Query: 23 AKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNSSSVVVFKALITI 82
K V AT ++ PK+K++D +L T+ A + ++ L R +++ +V+KALI +
Sbjct: 6 TKLVKGATKIKMAPPKQKYVDPILSGTSSAR-GLQEITHALDIRLSDTAWTIVYKALIVL 64
Query: 83 HHLMCYGNERFTQYLASSNCSL-QLGNFLDKSGIHGYDMTPFIHRYSRYINEKSLSYRTV 141
H ++ G + T S N + QL + DM + RY Y+ + Y +
Sbjct: 65 HLMIQQGEKDVTLRHYSHNLDVFQLRKISHTTKWSSNDMRA-LQRYDEYLKTRCEEYGRL 123
Query: 142 AFD-----FCKVKRGKEDGLLRTMPANKLLKSLPVLQSQIDALLEFDCNNSDLRNGVING 196
D + +K G ++ L ++ L + L+ QI+AL+ + SDL N ++
Sbjct: 124 GMDHLRDNYSSLKLGSKNQL----SMDEELDHVESLEIQINALIRNKYSVSDLENHLLLY 179
Query: 197 AFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKKQCKEALDLYKKFLIRMDRVAEFLKVAE 256
AF LL +DL+ L+ N+ +I LLE +F+++ + K LDLYK F+ + V +LK+ +
Sbjct: 180 AFQLLVQDLLGLYNALNEGVITLLESFFELSIEHAKRTLDLYKDFVDMTEYVVRYLKIGK 239
Query: 257 NVGIDKGDIPDLTKAPSSLLEALEQHLATLEGKKSAAGTPTQ 298
VG+ IP + + L+ +LE+HL E K G P++
Sbjct: 240 AVGL---KIPVIKHITTKLINSLEEHLR--EETKRQRGEPSE 276
>sp|P94017|CAP9_ARATH Putative clathrin assembly protein At1g14910 OS=Arabidopsis
thaliana GN=At1g14910 PE=2 SV=2
Length = 692
Score = 112 bits (279), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 139/279 (49%), Gaps = 20/279 (7%)
Query: 22 LAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLL------IERTQNSSSVVV 75
L A+ KAT PK +HL + T+ D+A + + +T+N + V
Sbjct: 32 LDVAIVKATNHVECPPKDRHLRKIFLATSAIRPRA-DVAYCIHALSRRLHKTRNWT--VA 88
Query: 76 FKALITIHHLMCYGNERFTQYL---ASSNCSLQLGNFLDKSGIHGYDMTPFIHRYSRYIN 132
KAL+ IH L+ G+ F + L + +Q+ NF D S +D + ++ Y+ ++
Sbjct: 89 LKALLVIHRLLRDGDPTFREELLNFSQKGRIMQISNFKDDSSPVAWDCSGWVRTYALFLE 148
Query: 133 EKSLSYRTVAFD-----FCKVKRGKEDGLLRT--MPANKLLKSLPVLQSQIDALLEFDCN 185
E+ +R + +D KV G+E G +T + KLL+ LP LQ + L+
Sbjct: 149 ERLECFRVLKYDIEAERLPKVSPGQEKGYSKTRDLDGEKLLEQLPALQQLLHRLIGCKPE 208
Query: 186 NSDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKKQCKEALDLYKKFLIRM 245
+ N +I A L+ ++ +++ N+ IINL+EK+F+M + + +AL++YK+ ++
Sbjct: 209 GAAKHNHIIQYALSLVLKESFKVYCAINEGIINLVEKFFEMPRHEAIKALEIYKRAGLQA 268
Query: 246 DRVAEFLKVAENVGIDKG-DIPDLTKAPSSLLEALEQHL 283
++ F +V + + + + P L + P S L +E+++
Sbjct: 269 GNLSAFYEVCKGLELARNFQFPVLREPPQSFLTTMEEYM 307
>sp|Q8LBH2|CAP8_ARATH Putative clathrin assembly protein At2g01600 OS=Arabidopsis
thaliana GN=At2g01600 PE=2 SV=2
Length = 571
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 135/279 (48%), Gaps = 20/279 (7%)
Query: 22 LAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLL------IERTQNSSSVVV 75
L A+ KAT PK +HL + T+ D+A + + +T+N + V
Sbjct: 32 LDVAIVKATNHVECPPKDRHLRKIFAATSVTRARA-DVAYCIHALSRRLHKTRNWT--VA 88
Query: 76 FKALITIHHLMCYGNERFTQYL---ASSNCSLQLGNFLDKSGIHGYDMTPFIHRYSRYIN 132
K LI IH L+ G+ F + L + LQL NF D S +D + ++ Y+ ++
Sbjct: 89 LKTLIVIHRLLREGDPTFREELLNFSQRGRILQLSNFKDDSSPIAWDCSAWVRTYALFLE 148
Query: 133 EKSLSYRTVAFD-----FCKVKRGKEDGLLRT--MPANKLLKSLPVLQSQIDALLEFDCN 185
E+ +R + +D K G++ G RT + +LL+ LP LQ + L+
Sbjct: 149 ERLECFRVLKYDTEAERLPKSNPGQDKGYSRTRDLDGEELLEQLPALQQLLYRLIGCRPE 208
Query: 186 NSDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKKQCKEALDLYKKFLIRM 245
+ N VI A L+ ++ +++ ND IINL++K+F+M K + +L++YK+ +
Sbjct: 209 GAANHNHVIQYALALVLKESFKVYCAINDGIINLIDKFFEMAKHEAITSLEIYKRAGQQA 268
Query: 246 DRVAEFLKVAENVGIDKG-DIPDLTKAPSSLLEALEQHL 283
+++F + + + + + P L + P S L +E+++
Sbjct: 269 RSLSDFYEACKGLELARNFQFPVLREPPQSFLTTMEEYI 307
>sp|Q9LVD8|CAP7_ARATH Putative clathrin assembly protein At5g57200 OS=Arabidopsis
thaliana GN=At5g57200 PE=3 SV=1
Length = 591
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 130/273 (47%), Gaps = 15/273 (5%)
Query: 25 AVCKATTEELIGPKKKHLDYLLHCTN----EANVSIPDLATLLIERTQNSSSVVVFKALI 80
A+ KAT PK++H+ + T+ A+V+ + L ++ + VV K LI
Sbjct: 35 AIVKATNHVESPPKERHVRKIFSATSVIQPRADVAY-CIHALSKRLSKTRNWVVAMKVLI 93
Query: 81 TIHHLMCYGNERFTQYL---ASSNCSLQLGNFLDKSGIHGYDMTPFIHRYSRYINEKSLS 137
IH + G+ F + L + L++ NF D + +D + ++ Y+ ++ E+
Sbjct: 94 VIHRTLREGDPTFREELLNYSHRRHILRISNFKDDTSPLAWDCSAWVRTYALFLEERLEC 153
Query: 138 YRTVAFDFCKVKRGKEDGL------LRTMPANKLLKSLPVLQSQIDALLEFDCNNSDLRN 191
YR + +D + K G R + LL+ LP LQ + L+ + N
Sbjct: 154 YRVLKYDIEAERLPKASGAASKTHRTRMLSGEDLLEQLPALQQLLYRLIGCQPEGAAYSN 213
Query: 192 GVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKKQCKEALDLYKKFLIRMDRVAEF 251
+I A L+ ++ +++ ND IINL++ +F+M++ +AL++YK+ + + +AEF
Sbjct: 214 YLIQYALALVLKESFKIYCAINDGIINLVDMFFEMSRHDAVKALNIYKRAGQQAENLAEF 273
Query: 252 LKVAENVGIDKG-DIPDLTKAPSSLLEALEQHL 283
+ + + + P L + P S L +E+++
Sbjct: 274 YDYCKGLELARNFQFPTLRQPPPSFLATMEEYI 306
>sp|Q8VYT2|CAP6_ARATH Putative clathrin assembly protein At4g25940 OS=Arabidopsis
thaliana GN=At4g25940 PE=2 SV=1
Length = 601
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 137/288 (47%), Gaps = 27/288 (9%)
Query: 20 QGLAKAVCKATTEELIGPKKKHLDYLLHCTN----EANVS--IPDLATLLIERTQNSSSV 73
+ L A+ KAT PK++H+ + T+ A+V+ I LA L +T+N V
Sbjct: 30 KDLDVAIVKATNHVESAPKERHIRRIFSATSVVQPRADVAYCIHALAKRL-SKTRNW--V 86
Query: 74 VVFKALITIHHLMCYGNERFTQYLASSNCS---LQLGNFLDKSGIHGYDMTPFIHRYSRY 130
V K LI IH + G+ F + L + + L++ NF D + +D + +I Y+ +
Sbjct: 87 VAIKVLIVIHRTLREGDPTFREELLNYSHRGHILRISNFKDDTSPLAWDCSAWIRTYALF 146
Query: 131 INEKSLSYRTVAFDFCKVKRGKEDGL--------------LRTMPANKLLKSLPVLQSQI 176
+ E+ YR + +D + K G R + +LL+ LP LQ +
Sbjct: 147 LEERLECYRVLKYDIEAERLPKGSGASSKNVDFNASQTYRTRMLSDEELLEQLPALQQLL 206
Query: 177 DALLEFDCNNSDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKKQCKEALD 236
L+ S N +I A L+ ++ +++ ND IINL++ +F+M++ +AL+
Sbjct: 207 YRLIGCQPEGSAYSNYLIQYALALVLKESFKIYCAINDGIINLVDMFFEMSRHDAVKALN 266
Query: 237 LYKKFLIRMDRVAEFLKVAENVGIDKG-DIPDLTKAPSSLLEALEQHL 283
+YK+ + + +A+F + + + + + P L + P S L +E ++
Sbjct: 267 IYKRAGQQAENLADFYEYCKGLELARNFQFPTLRQPPPSFLATMEDYI 314
>sp|P38856|AP18A_YEAST Clathrin coat assembly protein AP180A OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YAP1801 PE=1 SV=1
Length = 637
Score = 96.7 bits (239), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 119/455 (26%), Positives = 190/455 (41%), Gaps = 57/455 (12%)
Query: 24 KAVCKATTEELIGPKKKHLD-YLLHCTNEANVSIPDLATLLIERTQNSSSVVVFKALITI 82
K V AT + PK+K+LD LL +NE + ++ L R +++ +V+K+L+ +
Sbjct: 6 KLVKGATKIKSAPPKQKYLDPILLGTSNEEDFY--EIVKGLDSRINDTAWTIVYKSLLVV 63
Query: 83 HHLMCYGNERFTQYLASSNCSL-QLGNFLDKSGIHGYDMTPFIHRYSRYINEKSLSYRTV 141
H ++ G++ S N + N +G DM + RY Y+ + + +
Sbjct: 64 HLMIREGSKDVALRYYSRNLEFFDIENIRGSNGSASGDMRA-LDRYDNYLKVRCREFGKI 122
Query: 142 AFDFCKVKRGKEDGLLRTMPANK---------------LLKSLPVLQSQIDALLEFDCNN 186
D+ + DG RT+ N L + L+ QI AL++
Sbjct: 123 KKDYVR------DGY-RTLKLNSGNYGSSRNKQHSINIALDHVESLEVQIQALIKNKYTQ 175
Query: 187 SDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKKQCKEALDLYKKFLIRMD 246
DL N +I F LL +DL+ L+ N+ II LLE +F+++ + LDLYK F+ +
Sbjct: 176 YDLSNELIIFGFKLLIQDLLALYNALNEGIITLLESFFELSHHNAERTLDLYKTFVDLTE 235
Query: 247 RVAEFLKVAENVGIDKGDIPDLTKAPSSLLEALEQHLATLEGKKSAAGTPTQASHRNDVK 306
V +LK + G+ IP + + L+ +LE+HL + K P +S +
Sbjct: 236 HVVRYLKSGKTAGL---KIPVIKHITTKLVRSLEEHLIE-DDKTHNTFVPVDSSQGS--A 289
Query: 307 SGVNSFSTTSSAFSAVSGAD--LEESLKKQALAEEEAILNQYKAKVSSP---TSSMPSN- 360
V + ST + LE LK + +A A+ A+ +P SSM +N
Sbjct: 290 GAVVAKSTAQERLEQIREQKRILEAQLKNEQVAISPALTTVTAAQSYNPFGTDSSMHTNI 349
Query: 361 ---------AASTNPFLASPTQPIVDLFGSAPASVEPVQTSKPSDDLLQLG---NPFVDD 408
+ NPF+ S TQP V + A EP + P +Q NP D
Sbjct: 350 PMAVANQTQQIANNPFV-SQTQPQV--MNTPTAHTEPANLNVPEYAAVQHTVNFNPVQDA 406
Query: 409 FTGAAAPGSQPPVNNAWTS--NGFNMNTTSVQQDS 441
A G +NN T G SV QD+
Sbjct: 407 GVSAQQTGYY-SINNHLTPTFTGAGFGGYSVSQDT 440
>sp|Q9LHS0|CAP10_ARATH Putative clathrin assembly protein At5g35200 OS=Arabidopsis
thaliana GN=At5g35200 PE=1 SV=1
Length = 544
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 119/226 (52%), Gaps = 14/226 (6%)
Query: 64 IERTQNSSSVVVFKALITIHHLMCYGNERFTQ----YLASSNCSLQLGNFLDKSGIHGYD 119
+ RT N + V K LI IH + ++ F + Y S + L + +F D SG + +
Sbjct: 83 LSRTHNWA--VALKTLIVIHRALREVDQTFHEEVINYSRSRSHMLNMSHFKDDSGPNAWA 140
Query: 120 MTPFIHRYSRYINEKSLSYRTVAFDF-CKVKRGKEDGLLRTMPANKLLKSLPVLQSQIDA 178
+ ++ Y+ ++ E+ +R + +D R K+ + LL+ LP LQ +
Sbjct: 141 YSAWVRFYALFLEERLECFRVLKYDVEVDPPRTKD------LDTPDLLEQLPALQELLFR 194
Query: 179 LLEFDCNNSDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKKQCKEALDLY 238
+L+ + ++N +I A ++ + +++ D I NL++K+FDM + +ALD+Y
Sbjct: 195 VLDCQPEGAAVQNHIIQLALSMVISESTKIYQALTDGIDNLVDKFFDMQRNDAVKALDMY 254
Query: 239 KKFLIRMDRVAEFLKVAENVGIDKGD-IPDLTKAPSSLLEALEQHL 283
++ + + R++EF +V ++V + +G+ + + P+S L+A+E+++
Sbjct: 255 RRAVKQAGRLSEFFEVCKSVNVGRGERFIKIEQPPTSFLQAMEEYV 300
>sp|Q9SA65|CAP4_ARATH Putative clathrin assembly protein At1g03050 OS=Arabidopsis
thaliana GN=At1g03050 PE=2 SV=1
Length = 599
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/361 (18%), Positives = 154/361 (42%), Gaps = 36/361 (9%)
Query: 25 AVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIER-TQNSSSVVVFKALITIH 83
A+ KAT E ++K++ +L T+ + I + L R + V K LI I
Sbjct: 37 AIVKATRHEEFPAEEKYIREILSLTSYSRSYINACVSTLSRRLNKTKCWTVALKTLILIQ 96
Query: 84 HLMCYGNERFTQ--YLASSNCS--LQLGNFLDKSGIHGYDMTPFIHRYSRYINEKSLSYR 139
L+ G++ + Q + A+ + L + +F D S + +D + F+ Y+ Y++E+ L +R
Sbjct: 97 RLLGEGDQAYEQEIFFATRRGTRLLNMSDFRDVSRSNSWDYSAFVRTYALYLDER-LDFR 155
Query: 140 TVAFD-----FCKVKRGKEDG------------LLRTMP-----ANKLLKSLPVLQSQID 177
A +C E+ ++R+ P ++ + LQ +D
Sbjct: 156 MQARHGKRGVYCVGGEADEEEQDQAAADLSTAIVVRSQPIAEMKTEQIFIRIQHLQQLLD 215
Query: 178 ALLEFDCNNSDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKKQCKEALDL 237
L + N V+ A + ++ +++ + + L+E++ +++ + D+
Sbjct: 216 RFLACRPTGNARNNRVVIVALYPIVKESFQIYYDVTEIMGILIERFMELDIPDSIKVYDI 275
Query: 238 YKKFLIRMDRVAEFLKVAENVGIDKG----DIPDLTKAPSSLLEALEQHLATLEGKKSAA 293
+ + + + + +F +N+GI + +I +T+ L++ + + LE K +
Sbjct: 276 FCRVSKQFEELDQFYSWCKNMGIARSSEYPEIEKITQKKLDLMDEFIRDKSALEHTKQSK 335
Query: 294 GTPTQASHRND--VKSGVNSFSTTSSAFSAVSG--ADLEESLKKQALAEEEAILNQYKAK 349
++A +D VN +A A+ E+ +K + A+EE I+ + + +
Sbjct: 336 SVKSEADEDDDEARTEEVNEEQEDMNAIKALPEPPPKEEDDVKPEEEAKEEVIIEKKQEE 395
Query: 350 V 350
+
Sbjct: 396 M 396
>sp|Q8LF20|CAP2_ARATH Putative clathrin assembly protein At2g25430 OS=Arabidopsis
thaliana GN=At2g25430 PE=1 SV=2
Length = 653
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 1/128 (0%)
Query: 157 LRTMPANKLLKSLPVLQSQIDALLEFDCNNSDLRNGVINGAFMLLFRDLIRLFAGYNDSI 216
LR M ++ + LQ +D L + +I A + R+ +L+A + +
Sbjct: 246 LREMTPERIFGKMGHLQRLLDRFLSLRPTGLAKNSRMILIALYPVVRESFKLYADICEVL 305
Query: 217 INLLEKYFDMNKKQCKEALDLYKKFLIRMDRVAEFLKVAENVGIDK-GDIPDLTKAPSSL 275
LL+K+FDM C +A D Y ++D + F + G+ + + P++ + S L
Sbjct: 306 AVLLDKFFDMEYSDCVKAFDAYASAAKQIDELIAFYNWCKETGVARSSEYPEVQRITSKL 365
Query: 276 LEALEQHL 283
LE LE+ +
Sbjct: 366 LETLEEFV 373
Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 22 LAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIER-TQNSSSVVVFKALI 80
L A+ KAT+ + +K++ +L+ T+ + I T + R ++ VV KAL+
Sbjct: 31 LEVAIVKATSHDDDPASEKYIREILNLTSLSRGYILACVTSVSRRLSKTRDWVVALKALM 90
Query: 81 TIHHLMCYGNERFTQYLASSNCS----LQLGNFLDKSGIHGYDMTPFIHRYSRYINEK 134
+H L+ G+ F + + S L + +F D++ +D + F+ Y+ Y++++
Sbjct: 91 LVHRLLNEGDPIFQEEILYSTRRGTRMLNMSDFRDEAHSSSWDHSAFVRTYAGYLDQR 148
>sp|Q8S9J8|CAP1_ARATH Probable clathrin assembly protein At4g32285 OS=Arabidopsis
thaliana GN=At4g32285 PE=1 SV=2
Length = 635
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 5/130 (3%)
Query: 157 LRTMPANKLLKSLPVLQSQIDALLEFDCNNSDL--RNGVINGAFMLLFRDLIRLFAGYND 214
LR M ++ + LQ +D L C + L + +I A + ++ RL+A +
Sbjct: 226 LREMTPERIFGKMGHLQRLLDRFLS--CRPTGLAKNSRMILIAMYPVVKESFRLYADICE 283
Query: 215 SIINLLEKYFDMNKKQCKEALDLYKKFLIRMDRVAEFLKVAENVGIDK-GDIPDLTKAPS 273
+ LL+K+FDM C +A D Y ++D + F ++ G+ + + P++ + S
Sbjct: 284 VLAVLLDKFFDMEYTDCVKAFDAYASAAKQIDELIAFYHWCKDTGVARSSEYPEVQRITS 343
Query: 274 SLLEALEQHL 283
LLE LE+ +
Sbjct: 344 KLLETLEEFV 353
Score = 40.0 bits (92), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 57/118 (48%), Gaps = 5/118 (4%)
Query: 22 LAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNSSS-VVVFKALI 80
L A+ KAT+ + K++ +L T+ + + T + R + + +V KAL+
Sbjct: 31 LEVAIVKATSHDDDQSSDKYIREILSLTSLSRGYVHACVTSVSRRLKKTRDWIVALKALM 90
Query: 81 TIHHLMCYGNERFTQYLASSNCS----LQLGNFLDKSGIHGYDMTPFIHRYSRYINEK 134
+H L+ G+ F + + + L + +F D++ +D + F+ Y+ Y++++
Sbjct: 91 LVHRLLNEGDPLFQEEILYATRRGTRILNMSDFRDEAHSSSWDHSAFVRTYASYLDQR 148
>sp|Q58718|RAD50_METJA DNA double-strand break repair Rad50 ATPase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rad50 PE=1 SV=1
Length = 1005
Score = 37.7 bits (86), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 99/241 (41%), Gaps = 58/241 (24%)
Query: 91 ERFTQYLASSNCSLQLGNFLDKSGIHGYDMTPFI--------HR--YSRYINEKSL--SY 138
E+F L +L+L N + I YD+ + H+ Y +Y KSL
Sbjct: 242 EKFINKLEERKRALELKN--QELKILEYDLNTVVEARETLNRHKDEYEKY---KSLVDEI 296
Query: 139 RTVAFDFCKVKRGKEDGLLRTMPANKLLKSLPVLQSQIDALLEFDCNNSDLRNGVINGAF 198
R + ++K ED L KL K L +++ I+ L EF N S R+ + N
Sbjct: 297 RKIESRLRELKSHYEDYL-------KLTKQLEIIKGDIEKLKEF-INKSKYRDDIDNLDT 348
Query: 199 ML-----------LFRDLIRLFAGYNDSIINLLEKYFDMNKKQCKEALDLYKKFLIRMDR 247
+L +DL+ N+ I +EKY K+ C+E + Y+K+L ++
Sbjct: 349 LLNKIKDEIERVETIKDLLEELKNLNEEI-EKIEKY----KRICEECKEYYEKYLELEEK 403
Query: 248 VAEFLKVA--------ENVGIDKGDIPDLTKAPSSLL--------EALEQHLATLEGKKS 291
E+ K+ E I+K +I DL + LL E++E L +E KK
Sbjct: 404 AVEYNKLTLEYITLLQEKKSIEK-NINDLETRINKLLEETKNIDIESIENSLKEIEEKKK 462
Query: 292 A 292
Sbjct: 463 V 463
>sp|Q9PIR7|ARGD_CAMJE Acetylornithine aminotransferase OS=Campylobacter jejuni subsp.
jejuni serotype O:2 (strain NCTC 11168) GN=argD PE=1
SV=2
Length = 393
Score = 36.6 bits (83), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 11/72 (15%)
Query: 120 MTPFIHRYSRYINEKSLSYRTVAFDFCKVKRGKEDGLLRTMPANKLLKSLPVLQ-SQIDA 178
+TP++ E+SL FDFCK ++G G ++ + +K +K V+Q Q +A
Sbjct: 306 LTPYL--------EQSLDELINEFDFCKKRKGL--GFMQGLSLDKSVKVAKVIQKCQENA 355
Query: 179 LLEFDCNNSDLR 190
LL C +DLR
Sbjct: 356 LLLISCGENDLR 367
>sp|C0H5F4|RBP2B_PLAF7 Reticulocyte binding protein 2 homolog b OS=Plasmodium falciparum
(isolate 3D7) GN=Rh2b PE=3 SV=1
Length = 3179
Score = 35.8 bits (81), Expect = 0.94, Method: Composition-based stats.
Identities = 42/157 (26%), Positives = 72/157 (45%), Gaps = 24/157 (15%)
Query: 295 TPTQASHRNDVKSGVNSFST-----TSSAFSAV--SGADLE-----ESLKKQALAE---E 339
T A HR++V S V+S S+ T FS++ G + E ES + ++ E E
Sbjct: 2961 TDENADHRHNVNS-VDSLSSSDYTDTQKDFSSIIKDGGNKEGHAENESKEYESQTEQTHE 3019
Query: 340 EAILNQYKAKVSSPTSSMPSNAASTNPFLASPTQPIVDLFGSAPASV-EPVQTSKPSDDL 398
E I+N K +S + N + + T+ +VD++ S ++ EP++T P++
Sbjct: 3020 EGIMNPNKYSISE-VDGIKLNEEAKHKI----TEKLVDIYPSTYRTLDEPMETHGPNEKF 3074
Query: 399 LQLGNPFV--DDFTGAAAPGSQPPVNNAWTSNGFNMN 433
G+P+V +D+T NN SN M+
Sbjct: 3075 HMFGSPYVTEEDYTEKHDYDKHEDFNNERYSNHNKMD 3111
>sp|Q9P6L5|SLA2_SCHPO Endocytosis protein end4 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=end4 PE=1 SV=2
Length = 1102
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 11 LAAKHSLAGQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNS 70
L + H + L +V KAT+ + PK+KH+ + T + + + P + ++ +
Sbjct: 6 LQSDHMQSDASLMTSVRKATSIDETAPKRKHVRSCIIFTWDHHTARPFWTAIKVQPLL-A 64
Query: 71 SSVVVFKALITIHHLMCYGNE 91
+ V FKALITIH ++ G++
Sbjct: 65 NEVQTFKALITIHRVLQEGHK 85
>sp|Q8L936|CAP16_ARATH Putative clathrin assembly protein At4g40080 OS=Arabidopsis
thaliana GN=At4g40080 PE=2 SV=2
Length = 365
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 80/176 (45%), Gaps = 15/176 (8%)
Query: 25 AVCKATTEE-LIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNSS-SVVVFKALITI 82
+V +ATT + P +HL +L + + ++ER + + V K+LI I
Sbjct: 40 SVLRATTHDPSTPPGNRHLAVILSAGTGSRATASSAVESIMERLHTTGDACVALKSLIII 99
Query: 83 HHLMCYGN----ERFTQYLASSNCS-LQLGNFLDKSGIHGYDMTPFIHRYSRYINEKSLS 137
HH++ +G ++ + + AS + L+L F D+ ++++ ++ Y+ Y+ +
Sbjct: 100 HHIVKHGRFILQDQLSVFPASGGRNYLKLSAFRDEKSPLMWELSSWVRWYALYLEHLLST 159
Query: 138 YRTVAFDFCK----VKRGKEDGLLRTMPANKLLKSLPVLQSQIDALLEFDCNNSDL 189
R + F + + + + ++ ++ + LL+ + L LLE C DL
Sbjct: 160 SRIMGFFISSTSSTIHKEEYEEMVSSLTNSDLLREIDALV----GLLEEACKIPDL 211
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 202,998,060
Number of Sequences: 539616
Number of extensions: 9013091
Number of successful extensions: 30676
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 256
Number of HSP's that attempted gapping in prelim test: 30044
Number of HSP's gapped (non-prelim): 764
length of query: 537
length of database: 191,569,459
effective HSP length: 122
effective length of query: 415
effective length of database: 125,736,307
effective search space: 52180567405
effective search space used: 52180567405
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)