Query psy16398
Match_columns 537
No_of_seqs 161 out of 571
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 20:17:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16398.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16398hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0251|consensus 100.0 9.3E-70 2E-74 583.1 36.3 291 1-291 1-296 (491)
2 PF07651 ANTH: ANTH domain; I 100.0 2.5E-61 5.4E-66 485.2 20.8 265 20-285 2-279 (280)
3 KOG0980|consensus 100.0 3.1E-40 6.8E-45 363.8 18.4 254 20-285 5-276 (980)
4 cd03564 ANTH_AP180_CALM ANTH d 100.0 2.4E-31 5.3E-36 237.5 11.7 115 22-136 1-115 (117)
5 smart00273 ENTH Epsin N-termin 99.9 3.6E-27 7.8E-32 213.0 10.2 122 20-142 1-124 (127)
6 PF01417 ENTH: ENTH domain; I 99.5 1E-13 2.3E-18 125.1 9.1 115 20-136 2-120 (125)
7 cd00197 VHS_ENTH_ANTH VHS, ENT 99.4 2.9E-13 6.2E-18 120.1 9.3 113 22-135 1-113 (115)
8 cd03571 ENTH_epsin ENTH domain 99.3 1.7E-11 3.8E-16 111.4 9.4 113 21-135 1-116 (123)
9 KOG2056|consensus 99.0 7.1E-10 1.5E-14 115.3 9.8 131 3-135 2-136 (336)
10 KOG2057|consensus 98.7 7.1E-08 1.5E-12 99.4 9.5 123 6-133 10-139 (499)
11 cd03572 ENTH_epsin_related ENT 98.4 1.3E-06 2.9E-11 79.5 8.7 111 25-135 5-117 (122)
12 cd03569 VHS_Hrs_Vps27p VHS dom 96.5 0.019 4.1E-07 53.6 9.6 81 20-100 3-83 (142)
13 cd03568 VHS_STAM VHS domain fa 96.3 0.017 3.6E-07 54.2 8.1 78 22-99 1-78 (144)
14 PF00790 VHS: VHS domain; Int 96.2 0.014 3.1E-07 53.9 7.2 81 19-99 3-83 (140)
15 cd03567 VHS_GGA VHS domain fam 96.2 0.026 5.7E-07 52.7 8.6 78 22-99 2-79 (139)
16 cd03561 VHS VHS domain family; 96.2 0.038 8.1E-07 50.7 9.5 113 23-139 2-115 (133)
17 smart00288 VHS Domain present 96.1 0.029 6.2E-07 51.7 8.2 79 22-100 1-79 (133)
18 cd03565 VHS_Tom1 VHS domain fa 95.6 0.065 1.4E-06 50.0 8.8 79 22-100 2-81 (141)
19 KOG0414|consensus 90.6 7.7 0.00017 47.2 16.2 178 58-261 359-574 (1251)
20 KOG1087|consensus 89.5 16 0.00034 40.9 16.8 73 22-94 2-74 (470)
21 KOG2199|consensus 84.0 3.8 8.2E-05 44.6 7.9 81 19-100 6-87 (462)
22 PF06830 Root_cap: Root cap; 61.7 6 0.00013 31.8 2.0 32 465-511 9-40 (57)
23 KOG1086|consensus 57.7 27 0.00058 38.8 6.7 80 19-98 6-85 (594)
24 KOG2057|consensus 57.7 45 0.00098 35.8 8.1 8 373-380 327-334 (499)
25 PF02184 HAT: HAT (Half-A-TPR) 49.4 13 0.00027 26.7 1.8 26 231-256 3-28 (32)
26 cd06895 PX_PLD The phosphoinos 40.8 44 0.00096 31.4 4.6 24 263-286 89-121 (140)
27 PF02042 RWP-RK: RWP-RK domain 40.2 31 0.00067 27.3 2.9 36 218-262 8-43 (52)
28 PTZ00473 Plasmodium Vir superf 30.2 6.9E+02 0.015 27.8 11.9 102 22-135 6-116 (420)
29 KOG1915|consensus 28.3 97 0.0021 35.2 5.3 66 162-256 150-215 (677)
30 cd06878 PX_SNX25 The phosphoin 24.4 98 0.0021 28.4 3.9 44 238-286 56-108 (127)
31 PF08832 SRC-1: Steroid recept 23.8 41 0.0009 28.8 1.2 11 80-90 57-67 (78)
32 PF11593 Med3: Mediator comple 21.6 6.7E+02 0.015 27.5 9.9 53 197-259 40-92 (379)
33 KOG2510|consensus 20.4 6.6E+02 0.014 28.7 9.7 149 204-422 324-474 (532)
No 1
>KOG0251|consensus
Probab=100.00 E-value=9.3e-70 Score=583.12 Aligned_cols=291 Identities=45% Similarity=0.662 Sum_probs=278.9
Q ss_pred CCCccHHHHHHHHhhhcC--ChhHHHHHHhhccCCCCCCccccHHHHHHHhcCCCCCHHHHHHHHHhhhC-CCCchhhHH
Q psy16398 1 MAGQTINDRLLAAKHSLA--GQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQ-NSSSVVVFK 77 (537)
Q Consensus 1 ~~g~s~~dr~~aa~~sl~--gs~lekAV~KATs~de~PPKeKHVr~II~~T~~~~~si~~i~~~L~~R~~-tsnWiVa~K 77 (537)
++++.|+||++++++++. +.++++||+|||+|++.|||+|||++|+.+|...+++++.|+++|.+|++ ++||+||+|
T Consensus 1 ~~~gaiKD~~s~~~a~v~~~~~~l~~AV~KATsh~~~ppk~k~l~~Il~~ts~~~~~i~~~v~aLs~Rl~~TrnW~VAlK 80 (491)
T KOG0251|consen 1 RAIGAIKDRTSIGKASVASAGSDLEKAVVKATSHDDMPPKDKYLDEILSATSSSPASIPSCVHALSERLNKTRNWTVALK 80 (491)
T ss_pred CCccccchhhhhHHHHhhhhhhhHHHHHHhhccCCCCCccHHHHHHHHHHhcCCcccHHHHHHHHHHHhCCCcceeehHH
Confidence 578999999999999998 89999999999999999999999999999999999999999999999975 669999999
Q ss_pred HHHHHHHHhhcCCHhHHHHHHhcCCccccccccccCCCCCCCcchHHHHHHHHHHHHHhhhhhcccccccccCCCCCCcc
Q psy16398 78 ALITIHHLMCYGNERFTQYLASSNCSLQLGNFLDKSGIHGYDMTPFIHRYSRYINEKSLSYRTVAFDFCKVKRGKEDGLL 157 (537)
Q Consensus 78 aLIlLHrLLrdG~~~flq~L~~~~~if~LsnF~D~ss~~g~d~s~fIR~YakYLdeRl~~fr~~~~Df~~~k~g~~~~~l 157 (537)
+|||+||||++|+++|.+++.+.+++|+|++|+|++++.+|||+.|||+|++||+||+.+|+.+++|+++.+++.....+
T Consensus 81 sLIliH~ll~~G~~~f~~~l~~~~~~l~lS~F~d~s~~~~~d~safVR~Ya~YLderl~~~~~~~~d~~~~~~~~~k~~~ 160 (491)
T KOG0251|consen 81 ALILIHRLLKEGDPSFEQELLSRNLILNLSDFRDKSSSLTWDMSAFVRTYALYLDERLECYRVLGFDIEKVKRGKEKTKD 160 (491)
T ss_pred HHHHHHHHHhcCcHHHHHHHHhcccccchhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHhccccccccCccccccc
Confidence 99999999999999999999888899999999999988899999999999999999999999999999988777666777
Q ss_pred cCCC-HHHHHhhHHHHHHHHHHHHccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q psy16398 158 RTMP-ANKLLKSLPVLQSQIDALLEFDCNNSDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKKQCKEALD 236 (537)
Q Consensus 158 r~ms-vE~LL~~l~~LQ~LIdaLL~c~~~~~~l~N~li~~Af~LLVkDs~~LY~~inegIi~LLE~fFeM~k~da~~aLe 236 (537)
+++. .+.+|+.++.||.|||++|+|++.+.+++|+||++||.|||+|+|+||.+||+|||+|||+||||+++||+++|+
T Consensus 161 ~~~~~~~~~l~~i~~LQ~lld~ll~~~p~~~~~~N~lI~~A~~lvvkdsf~ly~~i~~gi~~Llekffem~~~~a~~al~ 240 (491)
T KOG0251|consen 161 RSSKSTDKLLKTIPKLQNLLDRLLKCRPTGSALNNGLIIEAFELVVKDSFKLYAAINDGIINLLEKFFEMSKHDAIKALD 240 (491)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHcCCCCchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 8888 889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCccc-CCCCCCCCCCchHHHHHHHHhhhhhcCCC
Q psy16398 237 LYKKFLIRMDRVAEFLKVAENVGIDK-GDIPDLTKAPSSLLEALEQHLATLEGKKS 291 (537)
Q Consensus 237 IYkRF~~Q~e~L~eFy~~ck~lg~~k-i~IP~L~~~P~slL~aLEeyL~~~E~kk~ 291 (537)
|||||.+|+++|.+||++||.+|+.+ .+||+|+++|.++|++|||||++.++.+.
T Consensus 241 iykr~~~q~e~L~~f~~~ck~~g~~r~~~iP~l~~i~~s~l~~lEe~l~~~~~~~~ 296 (491)
T KOG0251|consen 241 IYKRFLSQTEKLSEFLKVCKSVGVDRGFEIPVLKRIPISLLEALEEHLRDVEGGKA 296 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccCcchhhcCHHHHHHHHHHHhhcccccc
Confidence 99999999999999999999999987 69999999999999999999999876654
No 2
>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits. The domain is involved in phosphatidylinositol 4,5-bisphosphate binding and is a universal adaptor for nucleation of clathrin coats [, ].; GO: 0005543 phospholipid binding; PDB: 1HX8_A 3ZYM_A 1HFA_A 1HG2_A 3ZYL_B 3ZYK_A 1HG5_A 1HF8_A.
Probab=100.00 E-value=2.5e-61 Score=485.18 Aligned_cols=265 Identities=32% Similarity=0.519 Sum_probs=212.1
Q ss_pred hhHHHHHHhhccCCCCCCccccHHHHHHHhcCCCCCHHHHHHHHHhhhC-CCCchhhHHHHHHHHHHhhcCCHhHHHHHH
Q psy16398 20 QGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQ-NSSSVVVFKALITIHHLMCYGNERFTQYLA 98 (537)
Q Consensus 20 s~lekAV~KATs~de~PPKeKHVr~II~~T~~~~~si~~i~~~L~~R~~-tsnWiVa~KaLIlLHrLLrdG~~~flq~L~ 98 (537)
+++++||+|||+|+++|||+|||+.||.+||. +.++..++|+|.+|+. +++|+|+||+||++||||||||++|.+++.
T Consensus 2 ~~l~~av~KAT~~~~~ppk~Khv~~il~~t~~-~~~~~~~~~~l~~Rl~~~~~w~V~~K~Lil~H~llr~G~~~~~~~~~ 80 (280)
T PF07651_consen 2 SDLEKAVIKATSHDEAPPKEKHVREILSATSS-PESVAFLFWALSRRLPLTRNWIVALKALILLHRLLRDGHPSFLQELL 80 (280)
T ss_dssp -HHHHHHHHHT-SSS---HHHHHHHHHHHCST-TS-HHHHHHHHHHHCTSS-SHHHHHHHHHHHHHHHHHS-CHHHHHHH
T ss_pred hHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcC-CccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 68999999999999999999999999999999 7899999999999965 569999999999999999999999997765
Q ss_pred h-cCCccccccccc--cCCCCCCCcchHHHHHHHHHHHHHhhhhhcccc---cccccCCC----CCCcc-cCCCHHHHHh
Q psy16398 99 S-SNCSLQLGNFLD--KSGIHGYDMTPFIHRYSRYINEKSLSYRTVAFD---FCKVKRGK----EDGLL-RTMPANKLLK 167 (537)
Q Consensus 99 ~-~~~if~LsnF~D--~ss~~g~d~s~fIR~YakYLdeRl~~fr~~~~D---f~~~k~g~----~~~~l-r~msvE~LL~ 167 (537)
+ +.+++++.++|+ .++..+|+|+.|||+|++||++|+.+|+..+.+ ++..+.+. +.... ..+++++||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~Y~~yL~~rl~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~lL~ 160 (280)
T PF07651_consen 81 RYNRRLFDLSNIWDFDDSSSKSWDYSAFIRAYAKYLDERLSFHRKLKIDPGNLEREEEGSLVSRDDPNSRKSLDIDDLLD 160 (280)
T ss_dssp HTT-----TT---T---SSCHHHHHHHHHHHHHHHHHHHHHHHHHHSS----CCCS--S-----TTSHCC-C--HHHHHH
T ss_pred HcccchhhhccccccccCCccccchhHHHHHHHHHHHHHHHHHHHccccccccccccccccccccCccccccccHHHHHH
Confidence 4 456788888887 555678999999999999999999988888777 54443331 12233 3788899999
Q ss_pred hHHHHHHHHHHHHccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Q psy16398 168 SLPVLQSQIDALLEFDCNNSDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKKQCKEALDLYKKFLIRMDR 247 (537)
Q Consensus 168 ~l~~LQ~LIdaLL~c~~~~~~l~N~li~~Af~LLVkDs~~LY~~inegIi~LLE~fFeM~k~da~~aLeIYkRF~~Q~e~ 247 (537)
.++.||++|+++++|++.+.+++|.|+++||.+||+|+++||+.+++||++||++||+|++.||.++++||+||.+|+++
T Consensus 161 ~l~~lq~ll~~ll~~~~~~~~~~n~~~~~a~~lli~Ds~~lY~~i~~~i~~Ll~~~~~m~~~~a~~~~~i~~rf~~q~~~ 240 (280)
T PF07651_consen 161 QLPKLQRLLDRLLDCRPRGAALNNQCVQAAFRLLIKDSFQLYKFINEGIINLLERFFEMSKPDAEKLLGIYKRFAKQTEE 240 (280)
T ss_dssp HHHHHHHHHHHHHTT---GGG--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccc-CCCCCCCCCCchHHHHHHHHhhh
Q psy16398 248 VAEFLKVAENVGIDK-GDIPDLTKAPSSLLEALEQHLAT 285 (537)
Q Consensus 248 L~eFy~~ck~lg~~k-i~IP~L~~~P~slL~aLEeyL~~ 285 (537)
|++||++|+++|+++ .+||.|+++|++|+++||||+++
T Consensus 241 L~~Fy~~c~~~~~~~~~~iP~l~~~p~~~l~~lEe~l~~ 279 (280)
T PF07651_consen 241 LKEFYEWCKSLGYFRSLEIPSLPHIPPSFLQALEEYLRD 279 (280)
T ss_dssp HHHHHHHHHHCT--GGG-S--GGGS-CHHCCCCCHHHHC
T ss_pred HHHHHHHHHhCCcccCCCCCCCCCCCHHHHHHHHHHHhc
Confidence 999999999999976 66999999999999999999986
No 3
>KOG0980|consensus
Probab=100.00 E-value=3.1e-40 Score=363.78 Aligned_cols=254 Identities=18% Similarity=0.202 Sum_probs=212.3
Q ss_pred hhHHHHHHhhccCCCCCCccccHHHHHHHhcCCCCCHHHHHHHHHhh-hCCCCchhhHHHHHHHHHHhhcCCHhHHHHH-
Q psy16398 20 QGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIER-TQNSSSVVVFKALITIHHLMCYGNERFTQYL- 97 (537)
Q Consensus 20 s~lekAV~KATs~de~PPKeKHVr~II~~T~~~~~si~~i~~~L~~R-~~tsnWiVa~KaLIlLHrLLrdG~~~flq~L- 97 (537)
.++-+||.||++.+|+|||+||||.||++||+++++ .++|...+| +...+.+.+||+||+||||||||||+++.+.
T Consensus 5 ~~q~~av~KAis~~Et~~K~KH~Rt~I~gTh~eksa--~~FWt~ik~~PL~~~~VltwKfchllHKvLreGHpsal~es~ 82 (980)
T KOG0980|consen 5 RAQLEAVQKAISKDETPPKRKHVRTIIVGTHDEKSS--KIFWTTIKRQPLENHEVLTWKFCHLLHKVLREGHPSALEESQ 82 (980)
T ss_pred HHHHHHHHHHhccccCCCchhhhhheeeeecccccc--hhHHHHhhccccccchHHHHHHHHHHHHHHHcCCcchhHHHH
Confidence 457789999999999999999999999999999976 455666666 7899999999999999999999999998755
Q ss_pred HhcCCccccccccccCCCCCCCcchHHHHHHHHHHHHHhhhhhcccccccc---------cCCCCCCcccCCCHHH--HH
Q psy16398 98 ASSNCSLQLGNFLDKSGIHGYDMTPFIHRYSRYINEKSLSYRTVAFDFCKV---------KRGKEDGLLRTMPANK--LL 166 (537)
Q Consensus 98 ~~~~~if~LsnF~D~ss~~g~d~s~fIR~YakYLdeRl~~fr~~~~Df~~~---------k~g~~~~~lr~msvE~--LL 166 (537)
++++++.+|+.+|++.+ .+||++||.|++||.+|+. ||.++..|+.. ..+.|-+.+.++++|. ++
T Consensus 83 r~r~~i~~l~r~w~~ls---~~Yg~lI~~Y~klL~~Kl~-FH~k~p~FpGtle~s~~~l~~av~D~n~~feltvdmmd~~ 158 (980)
T KOG0980|consen 83 RYKKWITQLGRMWGHLS---DGYGPLIRAYVKLLHDKLS-FHAKHPVFPGTLEYSDYQLLTAVDDLNNGFELTVDMMDYM 158 (980)
T ss_pred HHHHHHHHHHHHhcccc---ccchHHHHHHHHHHHHHHh-HhhcCCCCCCCccccHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 55567889999999875 3689999999999999995 99998766531 1233556777777764 77
Q ss_pred hhHHHHHHHHHHHHccccCCC-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q psy16398 167 KSLPVLQSQIDALLEFDCNNS-DLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKKQCKEALDLYKKFLIRM 245 (537)
Q Consensus 167 ~~l~~LQ~LIdaLL~c~~~~~-~l~N~li~~Af~LLVkDs~~LY~~inegIi~LLE~fFeM~k~da~~aLeIYkRF~~Q~ 245 (537)
+.+..||..|.+.+....... ...+.|.++++++||.|++.||++++ .||.+++.--.+|+.++ ++.||..||
T Consensus 159 D~ll~lq~~vF~s~~s~r~~s~t~qgqCrlapLI~lIqds~~lY~y~v----kmlfkLHs~vp~dtLeg--hRdRf~~qf 232 (980)
T KOG0980|consen 159 DSLLELQQTVFSSMNSSRWVSLTPQGQCRLAPLIPLIQDSSGLYDYLV----KMLFKLHSQVPPDTLEG--HRDRFHTQF 232 (980)
T ss_pred HHHHHHHHHHHHHhhhccccccCCCcceehhHHHHHHHhhhhHHHHHH----HHHHHHHcCCCHHHhhh--HHHHHHHHH
Confidence 888888888888887533332 33456899999999999999999987 46666666556777665 599999999
Q ss_pred HHHHHHHHHHHhcCccc--CCCCCCCCCCchHHH--HHHHHhhh
Q psy16398 246 DRVAEFLKVAENVGIDK--GDIPDLTKAPSSLLE--ALEQHLAT 285 (537)
Q Consensus 246 e~L~eFy~~ck~lg~~k--i~IP~L~~~P~slL~--aLEeyL~~ 285 (537)
++|++||+.|++++||+ |+||.||+.||+|+. +|++|+..
T Consensus 233 ~rLk~FY~~~S~lqYfk~LI~IP~LP~~~Pnf~~~sdl~~~~~p 276 (980)
T KOG0980|consen 233 ERLKQFYADCSNLQYFKRLIQIPTLPEDAPNFLRQSDLESYITP 276 (980)
T ss_pred HHHHHHHHhcchhHHHHHHhcCCCCCCCCcccccccchhhcCCC
Confidence 99999999999999987 999999999999999 69999984
No 4
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. AP180 and CALM play important roles in clathrin-mediated endocytosis. AP180 is a brain-specific clathrin-binding protein which stimulates clathrin assembly during the recycling of synaptic vesicles. The ANTH domain is structurally similar to the VHS domain and is composed of a superhelix of eight alpha helices. ANTH domains bind both inositol phospholipids and proteins, and contribute to the nucleation and formation of clathrin coats on membranes. ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that the ANTH domain is a universal component of the machine
Probab=99.97 E-value=2.4e-31 Score=237.51 Aligned_cols=115 Identities=42% Similarity=0.586 Sum_probs=109.2
Q ss_pred HHHHHHhhccCCCCCCccccHHHHHHHhcCCCCCHHHHHHHHHhhhCCCCchhhHHHHHHHHHHhhcCCHhHHHHHHhcC
Q psy16398 22 LAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYLASSN 101 (537)
Q Consensus 22 lekAV~KATs~de~PPKeKHVr~II~~T~~~~~si~~i~~~L~~R~~tsnWiVa~KaLIlLHrLLrdG~~~flq~L~~~~ 101 (537)
++++|+|||+++++|||+|||++||.+|++++.++.+|+++|.+|+..+||+|+||+||+||+|||+|+++|.+++.++.
T Consensus 1 ~~~aV~kAT~~~~~~pk~k~v~~ii~~t~~~~~~~~~~~~~l~~Rl~~~~w~v~~K~LillH~llr~G~~~~~~~~~~~~ 80 (117)
T cd03564 1 LEKAVKKATSHDEAPPKDKHVRKIIAGTSSSPASIPSFASALSRRLLDRNWVVVLKALILLHRLLREGHPSFLQELLSRR 80 (117)
T ss_pred CchHHHhhcCCCCCCCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHcc
Confidence 47899999999999999999999999999977899999999999988899999999999999999999999999888788
Q ss_pred CccccccccccCCCCCCCcchHHHHHHHHHHHHHh
Q psy16398 102 CSLQLGNFLDKSGIHGYDMTPFIHRYSRYINEKSL 136 (537)
Q Consensus 102 ~if~LsnF~D~ss~~g~d~s~fIR~YakYLdeRl~ 136 (537)
.+|++.+|.|..+..+++|+.|||.|++||++|+.
T Consensus 81 ~~l~l~~~~~~~~~~~~~~~~~Vr~Ya~yL~~rl~ 115 (117)
T cd03564 81 GWLNLSNFLDKSSSLGYGYSAFIRAYARYLDERLS 115 (117)
T ss_pred CeeeccccccCCCCCchhhhHHHHHHHHHHHHHHh
Confidence 99999999998766889999999999999999996
No 5
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain.
Probab=99.94 E-value=3.6e-27 Score=212.98 Aligned_cols=122 Identities=30% Similarity=0.421 Sum_probs=109.8
Q ss_pred hhHHHHHHhhccCCCCCCccccHHHHHHHhcCCCCCHHHHHHHHHhhhCCC-CchhhHHHHHHHHHHhhcCCHhHHHHHH
Q psy16398 20 QGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNS-SSVVVFKALITIHHLMCYGNERFTQYLA 98 (537)
Q Consensus 20 s~lekAV~KATs~de~PPKeKHVr~II~~T~~~~~si~~i~~~L~~R~~ts-nWiVa~KaLIlLHrLLrdG~~~flq~L~ 98 (537)
++++++|+|||+++++|||+||+++|+.+|+.++.++.+|+..|++|+.++ +|+|+||+|++||+||++|+++++.+..
T Consensus 1 ~~~e~~V~kAT~~~~~~p~~k~~~~I~~~t~~~~~~~~~i~~~l~~Rl~~~~~w~~v~KsL~llh~ll~~G~~~~~~~~~ 80 (127)
T smart00273 1 SDLEVKVRKATNNDEWGPKGKHLREIIQGTHNEKSSFAEIMAVLWRRLNDTKNWRVVYKALILLHYLLRNGSPRVILEAL 80 (127)
T ss_pred CHHHHHHHHhcCCCCCCcCHHHHHHHHHHHccCHhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 478999999999999999999999999999999889999999999998765 9999999999999999999999986554
Q ss_pred -hcCCccccccccccCCCCCCCcchHHHHHHHHHHHHHhhhhhcc
Q psy16398 99 -SSNCSLQLGNFLDKSGIHGYDMTPFIHRYSRYINEKSLSYRTVA 142 (537)
Q Consensus 99 -~~~~if~LsnF~D~ss~~g~d~s~fIR~YakYLdeRl~~fr~~~ 142 (537)
+...+++|.+|++. +..|+|++.|||.|++||++|+..++.++
T Consensus 81 ~~~~~i~~L~~f~~~-~~~~~d~g~~VR~ya~~L~~~l~~~~~l~ 124 (127)
T smart00273 81 RNRNRILNLSDFQDI-DSRGKDQGANIRTYAKYLLERLEDDRRLK 124 (127)
T ss_pred HhhHHHhhHhhCeec-CCCCeeCcHHHHHHHHHHHHHHcCHHHHh
Confidence 44578999999987 46889999999999999999998665543
No 6
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=99.48 E-value=1e-13 Score=125.12 Aligned_cols=115 Identities=23% Similarity=0.253 Sum_probs=95.6
Q ss_pred hhHHHHHHhhccCCCCCCccccHHHHHHHhcCCCCCHHHHHHHHHhhh---CCCCchhhHHHHHHHHHHhhcCCHhHHHH
Q psy16398 20 QGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERT---QNSSSVVVFKALITIHHLMCYGNERFTQY 96 (537)
Q Consensus 20 s~lekAV~KATs~de~PPKeKHVr~II~~T~~~~~si~~i~~~L~~R~---~tsnWiVa~KaLIlLHrLLrdG~~~flq~ 96 (537)
+++|+-|.+||+.+++||..+++..|...|+++ .....++..|++|+ ..++|++++|+|.+||+|++.|+++|..+
T Consensus 2 s~~e~~v~eAT~~d~~gp~~~~l~eIa~~t~~~-~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~ 80 (125)
T PF01417_consen 2 SELELKVREATSNDPWGPPGKLLAEIAQLTYNS-KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDE 80 (125)
T ss_dssp -HHHHHHHHHTSSSSSS--HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHH
T ss_pred CHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHH
Confidence 678999999999999999999999999999998 57889999999998 67899999999999999999999999999
Q ss_pred HHhc-CCccccccccccCCCCCCCcchHHHHHHHHHHHHHh
Q psy16398 97 LASS-NCSLQLGNFLDKSGIHGYDMTPFIHRYSRYINEKSL 136 (537)
Q Consensus 97 L~~~-~~if~LsnF~D~ss~~g~d~s~fIR~YakYLdeRl~ 136 (537)
++.+ ..+..|.+|.. ....|.+.+.-||..++-|.+-+.
T Consensus 81 ~~~~~~~I~~l~~f~~-~d~~g~d~~~~VR~~A~~i~~lL~ 120 (125)
T PF01417_consen 81 LRDHIDIIRELQDFQY-VDPKGKDQGQNVREKAKEILELLN 120 (125)
T ss_dssp HHHTHHHHHGGGG----BBTTSTBHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcceeec-cCCCCccHHHHHHHHHHHHHHHhC
Confidence 8655 34566778866 333688888999999999988764
No 7
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=99.45 E-value=2.9e-13 Score=120.11 Aligned_cols=113 Identities=28% Similarity=0.322 Sum_probs=98.6
Q ss_pred HHHHHHhhccCCCCCCccccHHHHHHHhcCCCCCHHHHHHHHHhhhCCCCchhhHHHHHHHHHHhhcCCHhHHHHHHhcC
Q psy16398 22 LAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYLASSN 101 (537)
Q Consensus 22 lekAV~KATs~de~PPKeKHVr~II~~T~~~~~si~~i~~~L~~R~~tsnWiVa~KaLIlLHrLLrdG~~~flq~L~~~~ 101 (537)
+++.|.|||+++...|+.+++.+|..+++.....+.+++..|++|+..++|.|++|+|.+||.|++.|+++|.++++++.
T Consensus 1 ~~~~v~~AT~~~~~~p~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~ 80 (115)
T cd00197 1 FEKTVEKATSNENMGPDWPLIMEICDLINETNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASND 80 (115)
T ss_pred ChHHHHHHcCCCCCCCCHHHHHHHHHHHHCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhH
Confidence 36889999999999999999999999999887788999999999999999999999999999999999999999998776
Q ss_pred CccccccccccCCCCCCCcchHHHHHHHHHHHHH
Q psy16398 102 CSLQLGNFLDKSGIHGYDMTPFIHRYSRYINEKS 135 (537)
Q Consensus 102 ~if~LsnF~D~ss~~g~d~s~fIR~YakYLdeRl 135 (537)
-..++..| +.....|.+.+..||.|+++|.+..
T Consensus 81 ~~~~l~~~-~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 81 FAVELLKF-DKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHh-hccccccCCCChHHHHHHHHHHHHH
Confidence 55555555 3333457778899999999998764
No 8
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=99.27 E-value=1.7e-11 Score=111.36 Aligned_cols=113 Identities=19% Similarity=0.189 Sum_probs=92.8
Q ss_pred hHHHHHHhhccCCCCCCccccHHHHHHHhcCCCCCHHHHHHHHHhhhCCC--CchhhHHHHHHHHHHhhcCCHhHHHHHH
Q psy16398 21 GLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNS--SSVVVFKALITIHHLMCYGNERFTQYLA 98 (537)
Q Consensus 21 ~lekAV~KATs~de~PPKeKHVr~II~~T~~~~~si~~i~~~L~~R~~ts--nWiVa~KaLIlLHrLLrdG~~~flq~L~ 98 (537)
+.++-|+.||+.++++|..+++..|..+|++.. .+..|+..|++|+.+. +|++++|+|+||+.||+.|+++|+.+++
T Consensus 1 ~~e~~vreATs~d~wGp~~~~m~eIa~~t~~~~-~~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~vv~~~r 79 (123)
T cd03571 1 EAELKVREATSNDPWGPSGTLMAEIARATYNYV-EFQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVVDDAR 79 (123)
T ss_pred CHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCHH-HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 368889999999999999999999999999964 7789999999998654 9999999999999999999999998886
Q ss_pred hcCC-ccccccccccCCCCCCCcchHHHHHHHHHHHHH
Q psy16398 99 SSNC-SLQLGNFLDKSGIHGYDMTPFIHRYSRYINEKS 135 (537)
Q Consensus 99 ~~~~-if~LsnF~D~ss~~g~d~s~fIR~YakYLdeRl 135 (537)
.+.. +-.|.+|.-- ...|.|.+.-||.=|+-|.+-+
T Consensus 80 ~~~~~i~~L~~F~~~-d~~g~d~G~~VR~ka~~i~~Ll 116 (123)
T cd03571 80 ENLYIIRTLKDFQYI-DENGKDQGINVREKAKEILELL 116 (123)
T ss_pred HhHHHHHhhccceee-CCCCCchhHHHHHHHHHHHHHh
Confidence 5532 2234555431 1346688889999888877665
No 9
>KOG2056|consensus
Probab=99.04 E-value=7.1e-10 Score=115.26 Aligned_cols=131 Identities=18% Similarity=0.181 Sum_probs=103.7
Q ss_pred CccHHHHHHHHhhhcCC-hhHHHHHHhhccCCCCCCccccHHHHHHHhcCCCCCHHHHHHHHHhhhC--CCCchhhHHHH
Q psy16398 3 GQTINDRLLAAKHSLAG-QGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQ--NSSSVVVFKAL 79 (537)
Q Consensus 3 g~s~~dr~~aa~~sl~g-s~lekAV~KATs~de~PPKeKHVr~II~~T~~~~~si~~i~~~L~~R~~--tsnWiVa~KaL 79 (537)
++++++-.+-|+..+.+ ++.+..|.-||+.|.++|..+++..|..+|++.. .+.+||..||+|+. .++|++|+|+|
T Consensus 2 ~~~~~~l~Rqakn~v~~y~~~e~kVrdAT~nd~wGPs~~lm~eIA~~ty~~~-e~~eIm~vi~kRl~d~gknWR~VyKaL 80 (336)
T KOG2056|consen 2 TMSFRDLKRQAKNFIKNYSEAELKVRDATSNDPWGPSGTLMAEIAQATYNFV-EYQEIMDVLWKRLNDSGKNWRHVYKAL 80 (336)
T ss_pred cccHHHHHHHHHHHHhcchHHHHHHHhccccccCCCchHHHHHHHHHhcCHH-HHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 46667766666665555 8899999999999999999999999999999974 77899999999975 46999999999
Q ss_pred HHHHHHhhcCCHhHHHHHHhcCCccc-cccccccCCCCCCCcchHHHHHHHHHHHHH
Q psy16398 80 ITIHHLMCYGNERFTQYLASSNCSLQ-LGNFLDKSGIHGYDMTPFIHRYSRYINEKS 135 (537)
Q Consensus 80 IlLHrLLrdG~~~flq~L~~~~~if~-LsnF~D~ss~~g~d~s~fIR~YakYLdeRl 135 (537)
.||-+||..|+++|.++++.+.-+.. |..|.-- ...|.|.+.-||.-++-|..-|
T Consensus 81 tlleyLl~~GSErv~~~~ren~~~I~tL~~Fq~i-D~~G~dqG~nVRkkak~l~~LL 136 (336)
T KOG2056|consen 81 TLLEYLLKNGSERVVDETRENIYTIETLKDFQYI-DEDGKDQGLNVRKKAKELLSLL 136 (336)
T ss_pred HHHHHHHhcCcHHHHHHHHhhhHHHHHHhhceee-CCCCccchHHHHHHHHHHHHHh
Confidence 99999999999999988765432222 2344321 2356778888898888775444
No 10
>KOG2057|consensus
Probab=98.68 E-value=7.1e-08 Score=99.40 Aligned_cols=123 Identities=24% Similarity=0.272 Sum_probs=93.8
Q ss_pred HHHHHHHHhhhcCChhHHHHHHhhccCCCCCCccccHHHHHHHhcCC-CCCHHHHHHHHHhhhCC---CCchhhHHHHHH
Q psy16398 6 INDRLLAAKHSLAGQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEA-NVSIPDLATLLIERTQN---SSSVVVFKALIT 81 (537)
Q Consensus 6 ~~dr~~aa~~sl~gs~lekAV~KATs~de~PPKeKHVr~II~~T~~~-~~si~~i~~~L~~R~~t---snWiVa~KaLIl 81 (537)
|.|+++.+. ++-++++.-|+.||+.|.++|..-.+.+|-.+|+.. -..|+++++.||.|+.. .+|+-|||+|||
T Consensus 10 l~dkandai--MNY~e~e~~VREATNdDPWGPsG~lMgeIaeaTfmry~EdFpelmnmL~qRMLedNK~~WRRVYKSLiL 87 (499)
T KOG2057|consen 10 LTDKANDAI--MNYPEAEMDVREATNDDPWGPSGPLMGEIAEATFMRYMEDFPELMNMLFQRMLEDNKDAWRRVYKSLIL 87 (499)
T ss_pred HHHHHhHHH--hcchHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344444332 345899999999999999999999999999998762 13788999999999643 379999999999
Q ss_pred HHHHhhcCCHhHHHHHHhc---CCccccccccccCCCCCCCcchHHHHHHHHHHH
Q psy16398 82 IHHLMCYGNERFTQYLASS---NCSLQLGNFLDKSGIHGYDMTPFIHRYSRYINE 133 (537)
Q Consensus 82 LHrLLrdG~~~flq~L~~~---~~if~LsnF~D~ss~~g~d~s~fIR~YakYLde 133 (537)
|..||+.|.++|+++.+.+ -+-|+--+|.|.. |.|.+-.||.-.+-|.|
T Consensus 88 LaYLikNGSER~VqeAREh~YdLR~LEnYhfiDEh---GKDQGINIR~kVKeilE 139 (499)
T KOG2057|consen 88 LAYLIKNGSERFVQEAREHAYDLRRLENYHFIDEH---GKDQGINIRHKVKEILE 139 (499)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhhh---CccccccHHHHHHHHHH
Confidence 9999999999999865432 1223334677754 45666778888887733
No 11
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=98.38 E-value=1.3e-06 Score=79.51 Aligned_cols=111 Identities=20% Similarity=0.200 Sum_probs=94.1
Q ss_pred HHHhhccCCCCCCccccHHHHHHHhcCCCCCHHHHHHHHHhhhCCCCchhhHHHHHHHHHHhhcCCHhHHHHHHhcC-Cc
Q psy16398 25 AVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYLASSN-CS 103 (537)
Q Consensus 25 AV~KATs~de~PPKeKHVr~II~~T~~~~~si~~i~~~L~~R~~tsnWiVa~KaLIlLHrLLrdG~~~flq~L~~~~-~i 103 (537)
.|.+||+.++.||--=-.++|...|+.+...+.+++..|.+|+...+..|-+|+|-+|-+|++.|++.|..+++++. .+
T Consensus 5 ll~~ATsdd~~p~pgy~~~Eia~~t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~I 84 (122)
T cd03572 5 LLSKATSDDDEPTPGYLYEEIAKLTRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQI 84 (122)
T ss_pred HHHHHhcCCCCCCchHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHH
Confidence 58899999998888777889999999987788999999999999888888899999999999999999999887653 34
Q ss_pred cccccccccCCC-CCCCcchHHHHHHHHHHHHH
Q psy16398 104 LQLGNFLDKSGI-HGYDMTPFIHRYSRYINEKS 135 (537)
Q Consensus 104 f~LsnF~D~ss~-~g~d~s~fIR~YakYLdeRl 135 (537)
-.+.+|...-.. .|.+.+..||.=|+=|.+-+
T Consensus 85 k~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~i 117 (122)
T cd03572 85 RECANYKGPPDPLKGDSLNEKVREEAQELIKAI 117 (122)
T ss_pred HHHHHcCCCCCcccCcchhHHHHHHHHHHHHHH
Confidence 556778774333 68888999999888777665
No 12
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=96.49 E-value=0.019 Score=53.61 Aligned_cols=81 Identities=19% Similarity=0.135 Sum_probs=71.7
Q ss_pred hhHHHHHHhhccCCCCCCccccHHHHHHHhcCCCCCHHHHHHHHHhhhCCCCchhhHHHHHHHHHHhhcCCHhHHHHHHh
Q psy16398 20 QGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYLAS 99 (537)
Q Consensus 20 s~lekAV~KATs~de~PPKeKHVr~II~~T~~~~~si~~i~~~L~~R~~tsnWiVa~KaLIlLHrLLrdG~~~flq~L~~ 99 (537)
+.++..|.|||+....-|+--.+-.|....+.......+.+++|.+|++.+|..|++-+|.+|.-|+..++..|..++++
T Consensus 3 ~~~~~~I~kATs~~l~~~dw~~ileicD~In~~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas 82 (142)
T cd03569 3 SEFDELIEKATSELLGEPDLASILEICDMIRSKDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVAS 82 (142)
T ss_pred chHHHHHHHHcCcccCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhh
Confidence 67999999999998888888888888877777667788999999999999999999999999999999988888877765
Q ss_pred c
Q psy16398 100 S 100 (537)
Q Consensus 100 ~ 100 (537)
+
T Consensus 83 ~ 83 (142)
T cd03569 83 R 83 (142)
T ss_pred H
Confidence 4
No 13
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=96.29 E-value=0.017 Score=54.17 Aligned_cols=78 Identities=21% Similarity=0.173 Sum_probs=68.5
Q ss_pred HHHHHHhhccCCCCCCccccHHHHHHHhcCCCCCHHHHHHHHHhhhCCCCchhhHHHHHHHHHHhhcCCHhHHHHHHh
Q psy16398 22 LAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYLAS 99 (537)
Q Consensus 22 lekAV~KATs~de~PPKeKHVr~II~~T~~~~~si~~i~~~L~~R~~tsnWiVa~KaLIlLHrLLrdG~~~flq~L~~ 99 (537)
++..|.|||+....-|+--.+-.|....+.......+++++|.+|+...|..|++.+|.+|--|+..++..|.+++++
T Consensus 1 ~e~~iekATse~l~~~dw~~il~icD~I~~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas 78 (144)
T cd03568 1 FDDLVEKATDEKLTSENWGLILDVCDKVKSDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVAS 78 (144)
T ss_pred ChHHHHHHcCccCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhh
Confidence 467899999998888888888777777766666778999999999999999999999999999999999999988764
No 14
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=96.22 E-value=0.014 Score=53.86 Aligned_cols=81 Identities=22% Similarity=0.224 Sum_probs=69.0
Q ss_pred ChhHHHHHHhhccCCCCCCccccHHHHHHHhcCCCCCHHHHHHHHHhhhCCCCchhhHHHHHHHHHHhhcCCHhHHHHHH
Q psy16398 19 GQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYLA 98 (537)
Q Consensus 19 gs~lekAV~KATs~de~PPKeKHVr~II~~T~~~~~si~~i~~~L~~R~~tsnWiVa~KaLIlLHrLLrdG~~~flq~L~ 98 (537)
.+.++..|.|||++...-|+-..+-.|....+.......+++++|.+|+...+..|.+-+|.+|.-|+..+++.|..++.
T Consensus 3 ~~~~~~li~kATs~~~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~ 82 (140)
T PF00790_consen 3 SSSITELIEKATSESLPSPDWSLILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVA 82 (140)
T ss_dssp CSHHHHHHHHHT-TTSSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHT
T ss_pred CChHHHHHHHHhCcCCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHh
Confidence 36799999999999988888888888888777776677899999999999999999999999999999999999987765
Q ss_pred h
Q psy16398 99 S 99 (537)
Q Consensus 99 ~ 99 (537)
+
T Consensus 83 ~ 83 (140)
T PF00790_consen 83 S 83 (140)
T ss_dssp S
T ss_pred H
Confidence 3
No 15
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=96.16 E-value=0.026 Score=52.66 Aligned_cols=78 Identities=18% Similarity=0.118 Sum_probs=69.7
Q ss_pred HHHHHHhhccCCCCCCccccHHHHHHHhcCCCCCHHHHHHHHHhhhCCCCchhhHHHHHHHHHHhhcCCHhHHHHHHh
Q psy16398 22 LAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYLAS 99 (537)
Q Consensus 22 lekAV~KATs~de~PPKeKHVr~II~~T~~~~~si~~i~~~L~~R~~tsnWiVa~KaLIlLHrLLrdG~~~flq~L~~ 99 (537)
++..|.|||+....-|+--.+-.|....+.......+.+++|.+|+..+|..|++-+|.+|.-|+...+..|..++++
T Consensus 2 ~~~~iekAT~~~l~~~dw~~ileicD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas 79 (139)
T cd03567 2 LEAWLNKATNPSNREEDWEAIQAFCEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGK 79 (139)
T ss_pred HHHHHHHHcCccCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHh
Confidence 788999999999888998888888877776666778999999999999999999999999999999999999887764
No 16
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=96.15 E-value=0.038 Score=50.71 Aligned_cols=113 Identities=17% Similarity=0.079 Sum_probs=84.2
Q ss_pred HHHHHhhccCCCCCCccccHHHHHHHhcCCCCCHHHHHHHHHhhhCCCCchhhHHHHHHHHHHhhcCCHhHHHHHHhcCC
Q psy16398 23 AKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYLASSNC 102 (537)
Q Consensus 23 ekAV~KATs~de~PPKeKHVr~II~~T~~~~~si~~i~~~L~~R~~tsnWiVa~KaLIlLHrLLrdG~~~flq~L~~~~~ 102 (537)
...|.|||+....-|+-.-+-+|....+.......+.+++|.+|++..|..|++.+|.+|--|+..+...|..+++++..
T Consensus 2 ~~~I~kATs~~~~~~D~~~il~icd~I~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~f 81 (133)
T cd03561 2 TSLIERATSPSLEEPDWALNLELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEF 81 (133)
T ss_pred hHHHHHHcCcccCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHH
Confidence 46799999988788888888888877777777888999999999999999999999999999999999999888776544
Q ss_pred ccccccccccCCCCCCCcc-hHHHHHHHHHHHHHhhhh
Q psy16398 103 SLQLGNFLDKSGIHGYDMT-PFIHRYSRYINEKSLSYR 139 (537)
Q Consensus 103 if~LsnF~D~ss~~g~d~s-~fIR~YakYLdeRl~~fr 139 (537)
+.+|..+.... . ... ..-++-..+|.+....|.
T Consensus 82 l~~l~~l~~~~--~--~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 82 LLELVKIAKNS--P--KYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHhCCC--C--CCCHHHHHHHHHHHHHHHHHhc
Confidence 44444443322 0 112 223355566666655444
No 17
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=96.05 E-value=0.029 Score=51.66 Aligned_cols=79 Identities=20% Similarity=0.180 Sum_probs=69.2
Q ss_pred HHHHHHhhccCCCCCCccccHHHHHHHhcCCCCCHHHHHHHHHhhhCCCCchhhHHHHHHHHHHhhcCCHhHHHHHHhc
Q psy16398 22 LAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYLASS 100 (537)
Q Consensus 22 lekAV~KATs~de~PPKeKHVr~II~~T~~~~~si~~i~~~L~~R~~tsnWiVa~KaLIlLHrLLrdG~~~flq~L~~~ 100 (537)
++..|.|||+....-|+--.+-.|....+.......+.+++|.+|++..|..|++.+|.+|--|+......|..+++++
T Consensus 1 ~~~~i~kATs~~l~~~dw~~~l~icD~i~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~ 79 (133)
T smart00288 1 VERLIDKATSPSLLEEDWELILEICDLINSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASK 79 (133)
T ss_pred ChhHHHHHcCcCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhH
Confidence 3678999999988888888888888777777777789999999999999999999999999999999888888777543
No 18
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=95.64 E-value=0.065 Score=50.00 Aligned_cols=79 Identities=19% Similarity=0.128 Sum_probs=68.8
Q ss_pred HHHHHHhhccCCCCCCccccHHHHHHHhcCCCCCHHHHHHHHHhhhC-CCCchhhHHHHHHHHHHhhcCCHhHHHHHHhc
Q psy16398 22 LAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQ-NSSSVVVFKALITIHHLMCYGNERFTQYLASS 100 (537)
Q Consensus 22 lekAV~KATs~de~PPKeKHVr~II~~T~~~~~si~~i~~~L~~R~~-tsnWiVa~KaLIlLHrLLrdG~~~flq~L~~~ 100 (537)
++..|.|||+....-|+--.+-.|-...+.......+++++|.+|+. .+|..|++-+|.+|--|+..+..+|..+++++
T Consensus 2 ~~~~IekATse~l~~~dw~~ileicD~In~~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask 81 (141)
T cd03565 2 VGQLIEKATDGSLQSEDWGLNMEICDIINETEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKK 81 (141)
T ss_pred HhHHHHHHcCcCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 56789999999988888888888877777766677899999999986 56899999999999999999999999888754
No 19
>KOG0414|consensus
Probab=90.63 E-value=7.7 Score=47.21 Aligned_cols=178 Identities=18% Similarity=0.187 Sum_probs=102.7
Q ss_pred HHHHHHHhhhCCCCchhhHHHHHHHHHHhhcCCH--hHHHHHHhcCCccccccccccCCCCCCCcchHHHHHHHHHHHHH
Q psy16398 58 DLATLLIERTQNSSSVVVFKALITIHHLMCYGNE--RFTQYLASSNCSLQLGNFLDKSGIHGYDMTPFIHRYSRYINEKS 135 (537)
Q Consensus 58 ~i~~~L~~R~~tsnWiVa~KaLIlLHrLLrdG~~--~flq~L~~~~~if~LsnF~D~ss~~g~d~s~fIR~YakYLdeRl 135 (537)
+++..|.+|..+.+.-|-.|.|.++|||.+.-.. +..+++.+- -.+...| =+..||+|+--|.-.+
T Consensus 359 ~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~l----a~grl~D--------kSslVRk~Ai~Ll~~~ 426 (1251)
T KOG0414|consen 359 ELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLEL----AIGRLED--------KSSLVRKNAIQLLSSL 426 (1251)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCccHHHHHHHH----Hhccccc--------ccHHHHHHHHHHHHHH
Confidence 5888999999999999999999999999987542 222322210 0112223 3477888888887766
Q ss_pred hhhhhcc----ccccccc-----------C------C-CCCCcccCCCHHHHHhhHHHHH----HHHHHHHcccc----C
Q psy16398 136 LSYRTVA----FDFCKVK-----------R------G-KEDGLLRTMPANKLLKSLPVLQ----SQIDALLEFDC----N 185 (537)
Q Consensus 136 ~~fr~~~----~Df~~~k-----------~------g-~~~~~lr~msvE~LL~~l~~LQ----~LIdaLL~c~~----~ 185 (537)
..-|-.. .|-.+.+ . + .+....|..+.+.++...+..+ ++...-..|+. .
T Consensus 427 L~~~Pfs~~~~~~~~~~~~E~~~~~~e~~~e~t~~l~~e~~~~~~s~n~~~vi~~~~~~~~~~~~q~~ss~~~~~e~~~~ 506 (1251)
T KOG0414|consen 427 LDRHPFSSELRSDDLRAKLEKELQKLEEELESTEHLEEEEMTSNRSENVKGVIEDAEKDSTTEKNQLESSDNKQEEHCLL 506 (1251)
T ss_pred HhcCCchhhhcchhhhhhHHHHHHhhhhhcccccccchhhccchhhhhcccceeechhhhhhhccccccccccchhhhhh
Confidence 4322110 0000000 0 0 0111222222333444444443 22222222221 0
Q ss_pred -----CCcccchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy16398 186 -----NSDLRNGVI-NGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKKQCKEALDLYKKFLIRMDRVAEFLKVAENVG 259 (537)
Q Consensus 186 -----~~~l~N~li-~~Af~LLVkDs~~LY~~inegIi~LLE~fFeM~k~da~~aLeIYkRF~~Q~e~L~eFy~~ck~lg 259 (537)
....+|.++ +-+++--++|.+..-+.+.+++-.+...+|.-++.|..++. +||-.|+..|
T Consensus 507 ~~~~~s~~~~~~i~q~~~~vq~l~d~~sf~~~ms~~~~ii~~ll~s~t~teV~E~I--------------dfl~~c~~F~ 572 (1251)
T KOG0414|consen 507 ENEVESVPAENEIMQLKALVQFLEDAISFSDEMSEAIPIISQLLFSKTTTEVKEAI--------------DFLVRCKQFG 572 (1251)
T ss_pred hhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH--------------HHHHHHHHhC
Confidence 011122333 45666667999999999999998888888888888887765 6777788777
Q ss_pred cc
Q psy16398 260 ID 261 (537)
Q Consensus 260 ~~ 261 (537)
|.
T Consensus 573 I~ 574 (1251)
T KOG0414|consen 573 ID 574 (1251)
T ss_pred CC
Confidence 64
No 20
>KOG1087|consensus
Probab=89.53 E-value=16 Score=40.86 Aligned_cols=73 Identities=21% Similarity=0.133 Sum_probs=59.7
Q ss_pred HHHHHHhhccCCCCCCccccHHHHHHHhcCCCCCHHHHHHHHHhhhCCCCchhhHHHHHHHHHHhhcCCHhHH
Q psy16398 22 LAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNSSSVVVFKALITIHHLMCYGNERFT 94 (537)
Q Consensus 22 lekAV~KATs~de~PPKeKHVr~II~~T~~~~~si~~i~~~L~~R~~tsnWiVa~KaLIlLHrLLrdG~~~fl 94 (537)
+.+.|-|||+....-|+=-..-+|-...+......++.+++|.+|+..++-.|++=+|.||--|+..=...|.
T Consensus 2 v~~~IdkAT~~~l~~pDWa~NleIcD~IN~~~~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh 74 (470)
T KOG1087|consen 2 VGKLIDKATSESLAEPDWALNLEICDLINSTEGGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFH 74 (470)
T ss_pred hHHHHHHhhcccccCccHHHHHHHHHHHhcCccCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHH
Confidence 5678999999988888877666666667777777789999999999888879999999999999986554544
No 21
>KOG2199|consensus
Probab=84.04 E-value=3.8 Score=44.56 Aligned_cols=81 Identities=17% Similarity=0.186 Sum_probs=60.4
Q ss_pred ChhHHHHHHhhccCCCCCCccccHHHHHH-HhcCCCCCHHHHHHHHHhhhCCCCchhhHHHHHHHHHHhhcCCHhHHHHH
Q psy16398 19 GQGLAKAVCKATTEELIGPKKKHLDYLLH-CTNEANVSIPDLATLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYL 97 (537)
Q Consensus 19 gs~lekAV~KATs~de~PPKeKHVr~II~-~T~~~~~si~~i~~~L~~R~~tsnWiVa~KaLIlLHrLLrdG~~~flq~L 97 (537)
.+.++..|.|||....+-=+=.++-.+-. .+.++. .-.+|+..|.+|+..++.-|++-+|-|+.-|...=..+|..++
T Consensus 6 ~n~~e~~v~KAT~e~nT~enW~~IlDvCD~v~~~~~-~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EV 84 (462)
T KOG2199|consen 6 ANPFEQDVEKATDEKNTSENWSLILDVCDKVGSDPD-GGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEV 84 (462)
T ss_pred cchHHHHHHHhcCcccccccHHHHHHHHHhhcCCCc-ccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHH
Confidence 36799999999987655433334332222 233444 4479999999999999999999999999999987777887777
Q ss_pred Hhc
Q psy16398 98 ASS 100 (537)
Q Consensus 98 ~~~ 100 (537)
.++
T Consensus 85 sSr 87 (462)
T KOG2199|consen 85 SSR 87 (462)
T ss_pred hhh
Confidence 654
No 22
>PF06830 Root_cap: Root cap; InterPro: IPR009646 The cells at the periphery of the root cap are continuously sloughed off from the root into the mucilage, and are thought to be programmed to die [].This family represents a conserved region approximately 60 residues in length within plant root cap proteins, which may be involved in the process.
Probab=61.66 E-value=6 Score=31.85 Aligned_cols=32 Identities=44% Similarity=0.855 Sum_probs=22.8
Q ss_pred cccCCCcCCCcCCCCCCCccccccCCCCCCCCCCCCCCCcCCCCCCC
Q psy16398 465 STVPGALGANYRPMGQSMTPFYTDNAFPAQPVGAPRMPMMPSSGGTP 511 (537)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (537)
..+.|.||-.||| .|++. ..+|++ ||+| ||.+
T Consensus 9 ~~V~GVLGQTYr~------~yvn~-----vk~g~~-MPvm---GG~~ 40 (57)
T PF06830_consen 9 DDVHGVLGQTYRP------DYVNP-----VKVGVA-MPVM---GGED 40 (57)
T ss_pred cccceeccccccC------Ccccc-----cccCCC-Cccc---cCCc
Confidence 4578999999998 44433 567776 7777 6665
No 23
>KOG1086|consensus
Probab=57.70 E-value=27 Score=38.77 Aligned_cols=80 Identities=18% Similarity=0.088 Sum_probs=59.4
Q ss_pred ChhHHHHHHhhccCCCCCCccccHHHHHHHhcCCCCCHHHHHHHHHhhhCCCCchhhHHHHHHHHHHhhcCCHhHHHHHH
Q psy16398 19 GQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYLA 98 (537)
Q Consensus 19 gs~lekAV~KATs~de~PPKeKHVr~II~~T~~~~~si~~i~~~L~~R~~tsnWiVa~KaLIlLHrLLrdG~~~flq~L~ 98 (537)
+..|+.=|+|||+.-..--+-|++..++.-.+....+..-.+|.|..+++...--=++-+|-+|..||+.+.++|.+++.
T Consensus 6 ~~sle~wlnrATdp~~~eedw~ai~~fceqinkdp~gp~lAv~LlaHKiqSPqe~EAl~altvLe~cmkncGekfH~evg 85 (594)
T KOG1086|consen 6 VESLEYWLNRATDPSNDEEDWKAIDGFCEQINKDPEGPLLAVRLLAHKIQSPQEWEALQALTVLEYCMKNCGEKFHEEVG 85 (594)
T ss_pred cccHHHHHHhccCccchHHHHHHHHHHHHHHhcCCCCchhHHHHHHhhcCChhHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 35688999999998764445566666666666655555566777777777766556888999999999999988876553
No 24
>KOG2057|consensus
Probab=57.66 E-value=45 Score=35.78 Aligned_cols=8 Identities=38% Similarity=0.584 Sum_probs=5.8
Q ss_pred CccccccC
Q psy16398 373 QPIVDLFG 380 (537)
Q Consensus 373 ~~~~~~~~ 380 (537)
..++|||.
T Consensus 327 gdl~dLFD 334 (499)
T KOG2057|consen 327 GDLDDLFD 334 (499)
T ss_pred ccHHHHhc
Confidence 45788887
No 25
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=49.37 E-value=13 Score=26.73 Aligned_cols=26 Identities=23% Similarity=0.505 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16398 231 CKEALDLYKKFLIRMDRVAEFLKVAE 256 (537)
Q Consensus 231 a~~aLeIYkRF~~Q~e~L~eFy~~ck 256 (537)
-.+|=.||+||...+-.++.+.+.|+
T Consensus 3 ~dRAR~IyeR~v~~hp~~k~WikyAk 28 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPEVKNWIKYAK 28 (32)
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 34666899999999999999999886
No 26
>cd06895 PX_PLD The phosphoinositide binding Phox Homology domain of Phospholipase D. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. Members of this subfamily contain PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. Vertebrates contain two PLD isozymes, PLD1 and PLD2. PLD1 is located mainly in intracellular membr
Probab=40.84 E-value=44 Score=31.37 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=18.1
Q ss_pred CCCCCCCCCC-----chHHH----HHHHHhhhh
Q psy16398 263 GDIPDLTKAP-----SSLLE----ALEQHLATL 286 (537)
Q Consensus 263 i~IP~L~~~P-----~slL~----aLEeyL~~~ 286 (537)
.++|.|+..| +.+++ .||+||+.+
T Consensus 89 ~~lP~lP~~~~~~~~~~~ie~Rr~~Le~YL~~L 121 (140)
T cd06895 89 RRLPSLPALPDILVSEEQLDSRKKQLENYLQNL 121 (140)
T ss_pred ccCCCCCCccccccCHHHHHHHHHHHHHHHHHH
Confidence 4688888666 45666 699999986
No 27
>PF02042 RWP-RK: RWP-RK domain; InterPro: IPR003035 This domain is named RWP-RK after a conserved motif at the C terminus of the domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development [].
Probab=40.23 E-value=31 Score=27.33 Aligned_cols=36 Identities=22% Similarity=0.392 Sum_probs=27.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Q psy16398 218 NLLEKYFDMNKKQCKEALDLYKKFLIRMDRVAEFLKVAENVGIDK 262 (537)
Q Consensus 218 ~LLE~fFeM~k~da~~aLeIYkRF~~Q~e~L~eFy~~ck~lg~~k 262 (537)
.-|..||+|...||.+.|++-...++ +.|+.+|+.+
T Consensus 8 ~~L~~~fhlp~~eAA~~Lgv~~T~LK---------r~CR~~GI~R 43 (52)
T PF02042_consen 8 EDLSQYFHLPIKEAAKELGVSVTTLK---------RRCRRLGIPR 43 (52)
T ss_pred HHHHHHhCCCHHHHHHHhCCCHHHHH---------HHHHHcCCCC
Confidence 35678999999999998876554444 5799999754
No 28
>PTZ00473 Plasmodium Vir superfamily; Provisional
Probab=30.23 E-value=6.9e+02 Score=27.78 Aligned_cols=102 Identities=10% Similarity=0.123 Sum_probs=50.0
Q ss_pred HHHHHHhhccCCC----CCCcc--ccHHHHHHHhcCCCCCHHHHHHHHHhh--hCCCCchhhHHHHHHHHHHhhcCCHhH
Q psy16398 22 LAKAVCKATTEEL----IGPKK--KHLDYLLHCTNEANVSIPDLATLLIER--TQNSSSVVVFKALITIHHLMCYGNERF 93 (537)
Q Consensus 22 lekAV~KATs~de----~PPKe--KHVr~II~~T~~~~~si~~i~~~L~~R--~~tsnWiVa~KaLIlLHrLLrdG~~~f 93 (537)
.+.||+||...+. ..|+. .|+|-|-..+ ...|+..|... .+..+--++.|+.-.||.|++.|+-.-
T Consensus 6 ~dtai~k~lk~ey~fl~nwp~y~f~~~rg~y~~~------y~siC~~is~~s~~~~~~k~~C~kffs~leni~~rg~l~~ 79 (420)
T PTZ00473 6 RDTAIVKALKKEYPFLANWPDYHFEDLRGIYNAT------YESICEEISSVSDYNKVNKENCIKFFSILENIVRRGDLKK 79 (420)
T ss_pred HHHHHHHHHHHhchHhhcCcccCHHHHhhhhHhH------HHHHHHHhhcccchhhhhHHHHHHHHHHHHHHhccccccc
Confidence 4568888887654 22322 2333332222 23444444332 222344568888889999998875221
Q ss_pred HHHHHhcCCccccccccccCCCCCCC-cchHHHHHHHHHHHHH
Q psy16398 94 TQYLASSNCSLQLGNFLDKSGIHGYD-MTPFIHRYSRYINEKS 135 (537)
Q Consensus 94 lq~L~~~~~if~LsnF~D~ss~~g~d-~s~fIR~YakYLdeRl 135 (537)
-+.+.. ++..|..+. .++.+ ++.|++.|..++..-+
T Consensus 80 n~~iw~-----~~~ew~y~~-~~~~~v~s~~l~~f~~~~~~li 116 (420)
T PTZ00473 80 NDDIWK-----DFVEWFYNK-QEKFDVFSNHLESFNYDFEYLI 116 (420)
T ss_pred hhHHHH-----HHHHHHhcC-ccccccchHHHHHHHHHHHHHH
Confidence 111111 111222221 12222 5577888877765544
No 29
>KOG1915|consensus
Probab=28.33 E-value=97 Score=35.18 Aligned_cols=66 Identities=15% Similarity=0.414 Sum_probs=45.8
Q ss_pred HHHHHhhHHHHHHHHHHHHccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q psy16398 162 ANKLLKSLPVLQSQIDALLEFDCNNSDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKKQCKEALDLYKKF 241 (537)
Q Consensus 162 vE~LL~~l~~LQ~LIdaLL~c~~~~~~l~N~li~~Af~LLVkDs~~LY~~inegIi~LLE~fFeM~k~da~~aLeIYkRF 241 (537)
.|++|..+.-..+++.+-+++.|-.. -+.++. =||+...+-.+|-+||.||
T Consensus 150 mEE~LgNi~gaRqiferW~~w~P~eq--------------------aW~sfI---------~fElRykeieraR~IYerf 200 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEWEPDEQ--------------------AWLSFI---------KFELRYKEIERARSIYERF 200 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcCCCcHH--------------------HHHHHH---------HHHHHhhHHHHHHHHHHHH
Confidence 35667777777777788887766322 111111 1566667777777889999
Q ss_pred HHHHHHHHHHHHHHH
Q psy16398 242 LIRMDRVAEFLKVAE 256 (537)
Q Consensus 242 ~~Q~e~L~eFy~~ck 256 (537)
+-.+-++..|.++|+
T Consensus 201 V~~HP~v~~wikyar 215 (677)
T KOG1915|consen 201 VLVHPKVSNWIKYAR 215 (677)
T ss_pred heecccHHHHHHHHH
Confidence 988888988888877
No 30
>cd06878 PX_SNX25 The phosphoinositide binding Phox Homology domain of Sorting Nexin 25. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. The function of SNX25 is not yet known. It has been found in exosomes from human malignant pleural effusions. SNX25 shows the same domain architecture as SNX13 and SNX14, containing an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some S
Probab=24.44 E-value=98 Score=28.35 Aligned_cols=44 Identities=14% Similarity=0.237 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcccCCCCC-----CCCCCchHHH----HHHHHhhhh
Q psy16398 238 YKKFLIRMDRVAEFLKVAENVGIDKGDIPD-----LTKAPSSLLE----ALEQHLATL 286 (537)
Q Consensus 238 YkRF~~Q~e~L~eFy~~ck~lg~~ki~IP~-----L~~~P~slL~----aLEeyL~~~ 286 (537)
|..|...+.+|+++|...+. +.+|. +......||+ .||+||+.+
T Consensus 56 YsdF~~Lh~~Lk~~~~~~~~-----~~lP~ppKk~~~~~~~~fle~Rr~~Le~YLq~l 108 (127)
T cd06878 56 LSEFHDLHRKLKECSSWLKK-----VELPSLSKKWFKSIDKKFLDKSKNQLQKYLQFI 108 (127)
T ss_pred HHHHHHHHHHHHHHCCCccc-----cCCCCCCccccccCCHHHHHHHHHHHHHHHHHH
Confidence 67778888888888754322 22331 2234677777 599999975
No 31
>PF08832 SRC-1: Steroid receptor coactivator; InterPro: IPR014935 This domain is found in steroid/nuclear receptor coactivators and contains two LXXLL motifs that are involved in receptor binding [] and includes SRC-1/NcoA-1, NcoA-2/TIF2, pCIP/ACTR/GRIP-1/AIB1. ; PDB: 4DMA_F 2O9I_D 2QXM_D 2QGT_D 2QA8_D 2QSE_C 2QA6_D 2QAB_D 2QR9_D 1WM0_Y ....
Probab=23.75 E-value=41 Score=28.82 Aligned_cols=11 Identities=36% Similarity=0.610 Sum_probs=8.9
Q ss_pred HHHHHHhhcCC
Q psy16398 80 ITIHHLMCYGN 90 (537)
Q Consensus 80 IlLHrLLrdG~ 90 (537)
=+||||||+|+
T Consensus 57 KILHrLLQng~ 67 (78)
T PF08832_consen 57 KILHRLLQNGN 67 (78)
T ss_dssp HHHHHHHHCS-
T ss_pred HHHHHHHhcCC
Confidence 37899999994
No 32
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=21.64 E-value=6.7e+02 Score=27.53 Aligned_cols=53 Identities=17% Similarity=0.234 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy16398 197 AFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKKQCKEALDLYKKFLIRMDRVAEFLKVAENVG 259 (537)
Q Consensus 197 Af~LLVkDs~~LY~~inegIi~LLE~fFeM~k~da~~aLeIYkRF~~Q~e~L~eFy~~ck~lg 259 (537)
.++|++.|.+++-..| |++-+-+ .-++-|-||.|-++..++|.+|-+.-.+|+
T Consensus 40 PlRL~FNeFi~tma~I--------e~~~~~s--~qeKFl~IR~KlleL~~~lQ~lS~df~~Lq 92 (379)
T PF11593_consen 40 PLRLQFNEFIQTMANI--------EEMNNKS--PQEKFLLIRSKLLELYNKLQELSSDFQKLQ 92 (379)
T ss_pred cHHHHHHHHHHHHHHh--------hcccccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4778888777765433 4333322 233456788888888888888777777766
No 33
>KOG2510|consensus
Probab=20.40 E-value=6.6e+02 Score=28.66 Aligned_cols=149 Identities=23% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCchHHHHHHHHh
Q psy16398 204 DLIRLFAGYNDSIINLLEKYFDMNKKQCKEALDLYKKFLIRMDRVAEFLKVAENVGIDKGDIPDLTKAPSSLLEALEQHL 283 (537)
Q Consensus 204 Ds~~LY~~inegIi~LLE~fFeM~k~da~~aLeIYkRF~~Q~e~L~eFy~~ck~lg~~ki~IP~L~~~P~slL~aLEeyL 283 (537)
|+++||.++++ .--+.+..|.-.+.+-.+=-...--..++--.|-.+.++.|.+.++|.+ +.+
T Consensus 324 dl~rlYvsvke-----~gg~~~v~knkrd~a~~lgssaa~~l~k~y~~~lf~fec~f~Rg~e~p~------------~~~ 386 (532)
T KOG2510|consen 324 DLYRLYVSVKE-----IGGLTQVNKNKRDLATNLGSSAASSLKKQYIQYLFAFECKFERGEEPPP------------DIF 386 (532)
T ss_pred hHHHHHHHHHH-----hccceeeccchhhhhhccchHHHHHHHHHHHHHHHhhceeeeccCCCCH------------HHh
Q ss_pred hhhhcCCCCCCCCcccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCC
Q psy16398 284 ATLEGKKSAAGTPTQASHRNDVKSGVNSFSTTSSAFSAVSGADLEESLKKQALAEEEAILNQYKAKVSSPTSSMPSNAAS 363 (537)
Q Consensus 284 ~~~E~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (537)
...+.||. |... +..||..+.......
T Consensus 387 s~~~~Kk~------q~~~-----------------------------------------------~~psp~~s~s~~s~~ 413 (532)
T KOG2510|consen 387 SAGDSKKS------QPKI-----------------------------------------------QPPSPAGSGSMQSPQ 413 (532)
T ss_pred hccccccc------cCcc-----------------------------------------------CCCCCCCcccccCCC
Q ss_pred CCCCCCCCCCccccccCCCCCCCCCCCCCCCccccccc--CCCCcccccCCCCCCCCCCCC
Q psy16398 364 TNPFLASPTQPIVDLFGSAPASVEPVQTSKPSDDLLQL--GNPFVDDFTGAAAPGSQPPVN 422 (537)
Q Consensus 364 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 422 (537)
+-+-.++.-....|+|...|......|-..+.-|.=++ ++||-|+|...-++.+..+..
T Consensus 414 ~p~g~a~~~~~g~d~~p~tp~~tp~~Q~~p~~~~~ssisv~~pf~dp~~s~g~pg~~~p~~ 474 (532)
T KOG2510|consen 414 TPQGTASSMAEGGDLKPPTPASTPHSQIPPLPGMSSSISVQDPFNDPSDSTGQPGSMTPNP 474 (532)
T ss_pred CCCcchhhhhcccccCCCCcCCCChhhcCCCCCCCcceeccCCccCccccCCCCCCCCCCC
Done!