Query psy16398
Match_columns 537
No_of_seqs 161 out of 571
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 20:17:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16398.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16398hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hx8_A Synapse-enriched clathr 100.0 2E-77 7E-82 610.5 29.3 286 1-286 3-299 (299)
2 3zym_A Phosphatidylinositol-bi 100.0 2.8E-76 9.5E-81 605.1 26.6 285 1-286 8-292 (310)
3 3zyl_A Phosphatidylinositol-bi 100.0 9E-74 3.1E-78 576.8 25.9 264 1-265 8-271 (271)
4 1inz_A EPS15-interacting porte 99.6 5.1E-16 1.7E-20 143.7 9.9 125 10-136 11-139 (148)
5 1eyh_A Epsin; superhelix of he 99.6 1.5E-15 5.1E-20 140.0 9.6 115 20-136 4-121 (144)
6 1xgw_A Epsin 4; ENTH, enthopro 99.5 7.4E-14 2.5E-18 132.5 12.0 131 3-135 15-150 (176)
7 3onk_A Epsin-3, ENT3; helix, p 99.4 6.1E-13 2.1E-17 123.3 8.9 115 19-135 9-127 (150)
8 1vdy_A Hypothetical protein (R 98.7 2.6E-08 8.7E-13 91.4 9.3 113 23-135 13-128 (140)
9 3ldz_A STAM-1, signal transduc 96.6 0.0049 1.7E-07 55.9 7.8 82 18-99 2-83 (140)
10 3g2s_A C-terminal fragment of 96.6 0.0057 2E-07 56.3 8.0 84 16-99 6-89 (149)
11 1x5b_A Signal transducing adap 96.3 0.0069 2.4E-07 56.4 7.2 82 18-99 12-93 (163)
12 1juq_A ADP-ribosylation factor 96.2 0.0069 2.4E-07 56.8 6.5 82 18-99 10-91 (171)
13 3zyq_A Hepatocyte growth facto 96.0 0.014 4.8E-07 56.8 7.9 80 20-99 7-86 (226)
14 1elk_A Target of MYB1; superhe 96.0 0.015 5.1E-07 53.7 7.6 80 20-99 15-95 (157)
15 1mhq_A ADP-ribosylation factor 96.0 0.01 3.5E-07 54.4 6.5 78 22-99 2-79 (148)
16 1dvp_A HRS, hepatocyte growth 95.9 0.017 5.7E-07 55.9 7.7 79 20-98 4-82 (220)
17 3rru_A TOM1L1 protein; structu 95.8 0.017 5.8E-07 53.3 7.2 82 19-100 14-96 (152)
18 3bej_E Nuclear receptor coacti 50.2 5.4 0.00019 26.0 1.0 12 80-91 13-24 (26)
19 2prg_C Nuclear receptor coacti 26.5 20 0.00068 30.0 0.9 11 81-91 67-77 (88)
No 1
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3
Probab=100.00 E-value=2e-77 Score=610.51 Aligned_cols=286 Identities=80% Similarity=1.229 Sum_probs=253.7
Q ss_pred CCCccHHHHHHHHhhhcCChhHHHHHHhhccCCCCCCccccHHHHHHHhcCCCCCHHHHHHHHHhhhCCCCchhhHHHHH
Q psy16398 1 MAGQTINDRLLAAKHSLAGQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNSSSVVVFKALI 80 (537)
Q Consensus 1 ~~g~s~~dr~~aa~~sl~gs~lekAV~KATs~de~PPKeKHVr~II~~T~~~~~si~~i~~~L~~R~~tsnWiVa~KaLI 80 (537)
|+||+|+||+.|+||+.+|++++++|+|||+|+++|||+|||++||.+||++++++.+++++|++|++++||+|+||+||
T Consensus 3 ~~~~~~~~~~~a~k~~~~~~~l~kaV~KAT~~~~~ppk~Khv~~ii~~t~~~~~~~~~~~~~L~~R~~~~~w~va~K~Li 82 (299)
T 1hx8_A 3 MAGQTINDRLLAARHSLAGQGLAKSVCKATTEECIGPKKKHLDYLVHCANEPNVSIPHLANLLIERSQNANWVVVYKSLI 82 (299)
T ss_dssp -------------------CHHHHHHHHHSCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred CchHHHHHHHHHHhhccchhHHHHHHHhccCCCCCCCCHHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCcHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCHhHHHHHHhcCCccccccccccCC-----------CCCCCcchHHHHHHHHHHHHHhhhhhccccccccc
Q psy16398 81 TIHHLMCYGNERFTQYLASSNCSLQLGNFLDKSG-----------IHGYDMTPFIHRYSRYINEKSLSYRTVAFDFCKVK 149 (537)
Q Consensus 81 lLHrLLrdG~~~flq~L~~~~~if~LsnF~D~ss-----------~~g~d~s~fIR~YakYLdeRl~~fr~~~~Df~~~k 149 (537)
++|||||||||+|++++++++++|+|++|+|.++ ..+|||+.|||+|++||++|+.+||.+++||++.+
T Consensus 83 vlH~llreG~~~~~~~l~~~~~~l~l~~f~D~~~~~~~~~~~~~~~~~~d~s~~Ir~Ya~yL~~r~~~f~~~~~d~~~~~ 162 (299)
T 1hx8_A 83 TTHHLMAYGNERFMQYLASSNSTFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRRYAKYLNEKSLSYRAMAFDFCKVK 162 (299)
T ss_dssp HHHHHHHHSCHHHHHHHHHTTCCCCCTTCCCCCC---CCSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHSSCGGGC-
T ss_pred HHHHHHhcCCHHHHHHHHhCCcccchhhhhcccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHhCCCccccc
Confidence 9999999999999999988889999999999765 34678999999999999999889999999999877
Q ss_pred CCCCCCcccCCCHHHHHhhHHHHHHHHHHHHccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChH
Q psy16398 150 RGKEDGLLRTMPANKLLKSLPVLQSQIDALLEFDCNNSDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKK 229 (537)
Q Consensus 150 ~g~~~~~lr~msvE~LL~~l~~LQ~LIdaLL~c~~~~~~l~N~li~~Af~LLVkDs~~LY~~inegIi~LLE~fFeM~k~ 229 (537)
++.+++++++|++|+||++++.||+|||++++|++.+.+.+|+|+++||++||+|+++||+++|+||++|||+||+|++.
T Consensus 163 ~~~~~~~~~~l~~~~lL~~l~~lQ~li~~ll~~~~~~~~~~n~~~~~Al~llv~Ds~~lY~~i~~gi~~lLe~~fem~~~ 242 (299)
T 1hx8_A 163 RGKEEGSLRSMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYNDGIINLLEKYFDMNKK 242 (299)
T ss_dssp ----CCCTTTCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSH
T ss_pred cCccccchhhCCHHHHHHHHHHHHHHHHHHHCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 77778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCchHHHHHHHHhhhh
Q psy16398 230 QCKEALDLYKKFLIRMDRVAEFLKVAENVGIDKGDIPDLTKAPSSLLEALEQHLATL 286 (537)
Q Consensus 230 da~~aLeIYkRF~~Q~e~L~eFy~~ck~lg~~ki~IP~L~~~P~slL~aLEeyL~~~ 286 (537)
||++||+||+||.+|+++|++||++|+++||++++||+|+++|++|+++|||||+++
T Consensus 243 d~~~al~iykrf~~q~~~L~~Fy~~c~~~~~~~~~iP~L~~~p~~ll~~Lee~l~~~ 299 (299)
T 1hx8_A 243 HARDALDLYKKFLVRMDRVGEFLKVAENVGIDKGDIPDLTKAPSSLLDALEQHLATL 299 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGSCCCCCCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcCCCCCCCCCCCCHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999988999999999999999999999863
No 2
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=100.00 E-value=2.8e-76 Score=605.12 Aligned_cols=285 Identities=64% Similarity=1.057 Sum_probs=254.8
Q ss_pred CCCccHHHHHHHHhhhcCChhHHHHHHhhccCCCCCCccccHHHHHHHhcCCCCCHHHHHHHHHhhhCCCCchhhHHHHH
Q psy16398 1 MAGQTINDRLLAAKHSLAGQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNSSSVVVFKALI 80 (537)
Q Consensus 1 ~~g~s~~dr~~aa~~sl~gs~lekAV~KATs~de~PPKeKHVr~II~~T~~~~~si~~i~~~L~~R~~tsnWiVa~KaLI 80 (537)
|+||||+||++||||+++|++++++|+|||+|+++|||+|||++||.+||++++++.+++++|++|+.++||+|+||+||
T Consensus 8 ~~~~~~~~~~~~~~~~~~~s~l~~aV~KATs~~~~pPk~Khv~~il~~T~~~~~~~~~i~~~L~~Rl~~~~w~vv~KaLi 87 (310)
T 3zym_A 8 MSGQSLTDRITAAQHSVTGSAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNSSWVVVFKSLI 87 (310)
T ss_dssp ----CHHHHHHHHHHCCHHHHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred cccccHHHHHHHHHhcccccHHHHHHHhcCcCCCCCCChhHHHHHHHHHccCCCcHHHHHHHHHhhcCCCchHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred HHHHHhhcCCHhHHHHHHhcCCccccccccccCCCCCCCcchHHHHHHHHHHHHHhhhhhcccccccccCCCCCCcccCC
Q psy16398 81 TIHHLMCYGNERFTQYLASSNCSLQLGNFLDKSGIHGYDMTPFIHRYSRYINEKSLSYRTVAFDFCKVKRGKEDGLLRTM 160 (537)
Q Consensus 81 lLHrLLrdG~~~flq~L~~~~~if~LsnF~D~ss~~g~d~s~fIR~YakYLdeRl~~fr~~~~Df~~~k~g~~~~~lr~m 160 (537)
++|+|||+||++|+++++++.++|+|++|+|+++++||+|+.|||+|++||++|+.+||..+.||++.+++. ++++++|
T Consensus 88 vlH~llreG~~~~l~~~~~~~~~~~Ls~f~d~~~~~g~~~~~~Ir~Ya~yL~~Rl~~f~~~~~d~~~~~~~~-~~~~r~~ 166 (310)
T 3zym_A 88 TTHHLMVYGNERFIQYLASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDFTKVKRGA-DGVMRTM 166 (310)
T ss_dssp HHHHHHHHSCHHHHHHHHHCSCCCCCTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCTTTSCCST-TSHHHHC
T ss_pred HHHHHHhcCCHHHHHHHHhCCCeeecccccCCCCcCcccccHHHHHHHHHHHHHHHHHHHhCCCcccccCCC-CCccccC
Confidence 999999999999999998888899999999998778899999999999999999999999999999877765 5889999
Q ss_pred CHHHHHhhHHHHHHHHHHHHccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q psy16398 161 PANKLLKSLPVLQSQIDALLEFDCNNSDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKKQCKEALDLYKK 240 (537)
Q Consensus 161 svE~LL~~l~~LQ~LIdaLL~c~~~~~~l~N~li~~Af~LLVkDs~~LY~~inegIi~LLE~fFeM~k~da~~aLeIYkR 240 (537)
++|+||++++.||+|||++++|++.+.+++|+|+++||.+||+|+++||+++|+|||+|||+||||++.||++||+||+|
T Consensus 167 ~~~~Ll~~l~~lQ~lid~ll~~~~~~~~~~N~l~~~A~~llv~ds~~lY~~inegii~lLe~ffem~~~da~~al~iykr 246 (310)
T 3zym_A 167 NTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKK 246 (310)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTSCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCchHHHHHHHHhhhh
Q psy16398 241 FLIRMDRVAEFLKVAENVGIDKGDIPDLTKAPSSLLEALEQHLATL 286 (537)
Q Consensus 241 F~~Q~e~L~eFy~~ck~lg~~ki~IP~L~~~P~slL~aLEeyL~~~ 286 (537)
|.+|+++|.+||++||++|+++.+||+|+++|+++++.||+-|.+.
T Consensus 247 f~~Q~e~L~~Fy~~ck~l~l~~~~iP~L~~~p~d~l~~lq~~i~ev 292 (310)
T 3zym_A 247 FLTRMTRISEFLKVAEQVGIDRGDISGSGSGHMDRVRNLQSEVEGV 292 (310)
T ss_dssp HHHHHHHHHHHHHHHHHTC------------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccchHHHHHHHHHHHH
Confidence 9999999999999999999988899999999999999999988864
No 3
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=100.00 E-value=9e-74 Score=576.76 Aligned_cols=264 Identities=69% Similarity=1.135 Sum_probs=251.9
Q ss_pred CCCccHHHHHHHHhhhcCChhHHHHHHhhccCCCCCCccccHHHHHHHhcCCCCCHHHHHHHHHhhhCCCCchhhHHHHH
Q psy16398 1 MAGQTINDRLLAAKHSLAGQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNSSSVVVFKALI 80 (537)
Q Consensus 1 ~~g~s~~dr~~aa~~sl~gs~lekAV~KATs~de~PPKeKHVr~II~~T~~~~~si~~i~~~L~~R~~tsnWiVa~KaLI 80 (537)
|+||||+||+++|||+++|++++++|+|||+|+++|||+|||++||.+||++++++.++++.|++|+.++||+|+||+||
T Consensus 8 ~~~~~~~~~~~~~~~~~~~s~l~~aV~KATs~~~~~Pk~Khv~~il~~T~~~~~~~~~~~~~L~~Rl~~~~w~v~~KaLi 87 (271)
T 3zyl_A 8 MSGQSLTDRITAAQHSVTGSAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNSSWVVVFKSLI 87 (271)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHSTTSCHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred cccccHHHHHHHHHhcccchHHHHHHHhcCCCCCCCCCHHHHHHHHHHHccCCCcHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred HHHHHhhcCCHhHHHHHHhcCCccccccccccCCCCCCCcchHHHHHHHHHHHHHhhhhhcccccccccCCCCCCcccCC
Q psy16398 81 TIHHLMCYGNERFTQYLASSNCSLQLGNFLDKSGIHGYDMTPFIHRYSRYINEKSLSYRTVAFDFCKVKRGKEDGLLRTM 160 (537)
Q Consensus 81 lLHrLLrdG~~~flq~L~~~~~if~LsnF~D~ss~~g~d~s~fIR~YakYLdeRl~~fr~~~~Df~~~k~g~~~~~lr~m 160 (537)
++|||||+|||+|++|+++++++|+|++|+|+++++||||+.|||+|++||++|+.+||..+.||++.+++. ++++++|
T Consensus 88 vlH~llreG~~~~l~~~~~~~~~~~Ls~f~d~~~~~~~~~s~~Ir~Ya~yL~eRl~~f~~~~~d~~~~k~~~-~~~~r~~ 166 (271)
T 3zyl_A 88 TTHHLMVYGNERFIQYLASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDFTKVKRGA-DGVMRTM 166 (271)
T ss_dssp HHHHHHHHSCHHHHHHHHHCSCCCCCTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTTSCCST-TSHHHHC
T ss_pred HHHHHHhcCCHHHHHHHHhCCCeechhccCCCCCCCcccccHHHHHHHHHHHHHHHHHHHhCCCccccCCCC-CCccccC
Confidence 999999999999999998888899999999998778999999999999999999999999999999877765 5889999
Q ss_pred CHHHHHhhHHHHHHHHHHHHccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q psy16398 161 PANKLLKSLPVLQSQIDALLEFDCNNSDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKKQCKEALDLYKK 240 (537)
Q Consensus 161 svE~LL~~l~~LQ~LIdaLL~c~~~~~~l~N~li~~Af~LLVkDs~~LY~~inegIi~LLE~fFeM~k~da~~aLeIYkR 240 (537)
++|+||++++.||+|||++++|++.+.+++|+|+++||.+||+|+++||+++|+|||+|||+||||++.||++||+||||
T Consensus 167 ~~~~Ll~~l~~lQ~lld~ll~~~~~~~~~~N~li~~A~~lLv~es~~lY~~in~gii~lLe~ffem~~~da~~aleiykr 246 (271)
T 3zyl_A 167 NTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKK 246 (271)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCcccCCC
Q psy16398 241 FLIRMDRVAEFLKVAENVGIDKGDI 265 (537)
Q Consensus 241 F~~Q~e~L~eFy~~ck~lg~~ki~I 265 (537)
|.+|+++|.+||++||++|+.+.+|
T Consensus 247 f~~Q~~~L~~Fy~~ck~~gi~~~~~ 271 (271)
T 3zyl_A 247 FLTRMTRISEFLKVAEQVGIDRGDI 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHHHHHHHHcCcCcCCC
Confidence 9999999999999999999988664
No 4
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=99.63 E-value=5.1e-16 Score=143.67 Aligned_cols=125 Identities=17% Similarity=0.191 Sum_probs=105.8
Q ss_pred HHHHhhhcCC-hhHHHHHHhhccCCCCCCccccHHHHHHHhcCCCCCHHHHHHHHHhhhCCC--CchhhHHHHHHHHHHh
Q psy16398 10 LLAAKHSLAG-QGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNS--SSVVVFKALITIHHLM 86 (537)
Q Consensus 10 ~~aa~~sl~g-s~lekAV~KATs~de~PPKeKHVr~II~~T~~~~~si~~i~~~L~~R~~ts--nWiVa~KaLIlLHrLL 86 (537)
...+++.+.+ +++|+.|+.||++|.++|+.|++..|..+|++. ..+..|+..|++|+.++ +|+++||+|+|||+||
T Consensus 11 ~r~~~n~~~~~s~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~-~~~~eIm~~l~kRL~d~~k~WR~vyKaL~lleyLl 89 (148)
T 1inz_A 11 RRQMKNIVHNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNV-VAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLI 89 (148)
T ss_dssp CCCCCCCCSSCCCHHHHHHHHSCCCSCCCCSCHHHHHHHHHTSS-HHHHHHHHHHHHGGGCCSSCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCH-hhHHHHHHHHHHHHccCCcchhHhhHHHHHHHHHH
Confidence 3445666666 899999999999999999999999999999996 47789999999998764 8999999999999999
Q ss_pred hcCCHhHHHHHHhcC-CccccccccccCCCCCCCcchHHHHHHHHHHHHHh
Q psy16398 87 CYGNERFTQYLASSN-CSLQLGNFLDKSGIHGYDMTPFIHRYSRYINEKSL 136 (537)
Q Consensus 87 rdG~~~flq~L~~~~-~if~LsnF~D~ss~~g~d~s~fIR~YakYLdeRl~ 136 (537)
++|+++|+.+++.+. .+..|.+|.-- ..+|.|.+..||.|+++|.+-|.
T Consensus 90 ~nGse~vv~~~r~~~~~I~~L~~F~y~-d~~g~D~G~nVR~kAk~l~~LL~ 139 (148)
T 1inz_A 90 KTGSERVSQQCKENMYAVQTLKDFQYV-DRDGKDQGVNVREKAKQLVALLR 139 (148)
T ss_dssp HTTCHHHHHHHHHTHHHHHHHHHCCCC-CSSCCCCCHHHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHhHHHHHhhcceeee-CCCCcCchHHHHHHHHHHHHHhC
Confidence 999999998876543 35566665332 13678999999999999998875
No 5
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=99.60 E-value=1.5e-15 Score=139.95 Aligned_cols=115 Identities=17% Similarity=0.212 Sum_probs=99.1
Q ss_pred hhHHHHHHhhccCCCCCCccccHHHHHHHhcCCCCCHHHHHHHHHhhhCCC--CchhhHHHHHHHHHHhhcCCHhHHHHH
Q psy16398 20 QGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNS--SSVVVFKALITIHHLMCYGNERFTQYL 97 (537)
Q Consensus 20 s~lekAV~KATs~de~PPKeKHVr~II~~T~~~~~si~~i~~~L~~R~~ts--nWiVa~KaLIlLHrLLrdG~~~flq~L 97 (537)
+++|+.|+.||++|.++|+.+++..|..+|++. ..+..|+..|++|+.++ +|+++||+|+|||+||++|+++|+.++
T Consensus 4 s~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~-~~~~~Im~~l~kRL~d~~k~Wr~vyKaL~lleyLl~nGse~vv~~~ 82 (144)
T 1eyh_A 4 SEAEIKVREATSNDPWGPSSSLMSEIADLTYNV-VAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQQC 82 (144)
T ss_dssp CHHHHHHHHHTCSSSSCCCHHHHHHHHHHTTSH-HHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCH-hhHHHHHHHHHHHHccCCcchHHHhHHHHHHHHHHHhCCHHHHHHH
Confidence 789999999999999999999999999999986 47789999999998765 899999999999999999999999887
Q ss_pred HhcC-CccccccccccCCCCCCCcchHHHHHHHHHHHHHh
Q psy16398 98 ASSN-CSLQLGNFLDKSGIHGYDMTPFIHRYSRYINEKSL 136 (537)
Q Consensus 98 ~~~~-~if~LsnF~D~ss~~g~d~s~fIR~YakYLdeRl~ 136 (537)
+.+. .+..|.+|.-.. .+|.|++..||.|+++|.+-|.
T Consensus 83 ~~~~~~i~~L~~F~y~d-~~g~D~G~~VR~kak~l~~Ll~ 121 (144)
T 1eyh_A 83 KENMYAVQTLKDFQYVD-RDGKDQGVNVREKAKQLVALLR 121 (144)
T ss_dssp HHTHHHHHGGGGCCCBC-TTSCBCHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHhhhccceeeC-CCccchHHHHHHHHHHHHHHHC
Confidence 6553 356777774321 3578999999999999965553
No 6
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=99.51 E-value=7.4e-14 Score=132.48 Aligned_cols=131 Identities=19% Similarity=0.205 Sum_probs=99.8
Q ss_pred CccHHHHHHHHhhhcCC-hhHHHHHHhhccCCCCCCccccHHHHHHHhcCCCCCHHHHHHHHHhhh-C--CCCchhhHHH
Q psy16398 3 GQTINDRLLAAKHSLAG-QGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERT-Q--NSSSVVVFKA 78 (537)
Q Consensus 3 g~s~~dr~~aa~~sl~g-s~lekAV~KATs~de~PPKeKHVr~II~~T~~~~~si~~i~~~L~~R~-~--tsnWiVa~Ka 78 (537)
-+.|+.-+.-++..+.+ +++|+.|+.||+.|.++|..+++.+|..+|++.. .+..|+..|++|+ . .++|++++|+
T Consensus 15 ~~~~r~~~r~~kn~v~~ys~~E~kVreATnnd~wGPs~~~m~eIa~~T~~~~-~~~~Im~~L~kRl~~~~~k~WR~vyKa 93 (176)
T 1xgw_A 15 MWKVRELVDKATNVVMNYSEIESKVREATNDDPWGPSGQLMGEIAKATFMYE-QFPELMNMLWSRMLKDNKKNWRRVYKS 93 (176)
T ss_dssp -------------CCCCCCHHHHHHHHHTCSCSSCCCHHHHHHHHHHTTCTT-THHHHHHHHHHHHHSSCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcChh-hHHHHHHHHHHHHhccCCchhHHHHHH
Confidence 35677778888888888 9999999999999999999999999999999974 8899999999995 4 4699999999
Q ss_pred HHHHHHHhhcCCHhHHHHHHhcC-CccccccccccCCCCCCCcchHHHHHHHHHHHHH
Q psy16398 79 LITIHHLMCYGNERFTQYLASSN-CSLQLGNFLDKSGIHGYDMTPFIHRYSRYINEKS 135 (537)
Q Consensus 79 LIlLHrLLrdG~~~flq~L~~~~-~if~LsnF~D~ss~~g~d~s~fIR~YakYLdeRl 135 (537)
|+||++||+.|+++|+++++.+- .+-.|.+|.-- ...|.|.+..||..++.|.+-|
T Consensus 94 L~LLeYLl~nGse~vv~~~r~~i~~I~~L~~F~y~-D~~G~D~G~~VR~kAk~i~~LL 150 (176)
T 1xgw_A 94 LLLLAYLIRNGSERVVTSAREHIYDLRSLENYHFV-DEHGKDQGINIRQKVKELVEFA 150 (176)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHTHHHHHGGGGCCCB-CTTSCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHhHHHHHhhccCeeE-CCCCCChHHHHHHHHHHHHHHH
Confidence 99999999999999999885432 12335566432 1357899999999999995544
No 7
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=99.39 E-value=6.1e-13 Score=123.31 Aligned_cols=115 Identities=20% Similarity=0.196 Sum_probs=96.7
Q ss_pred ChhHHHHHHhhccCCCCCCccccHHHHHHHhcCCCCCHHHHHHHHHhhhCC---CCchhhHHHHHHHHHHhhcCCHhHHH
Q psy16398 19 GQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQN---SSSVVVFKALITIHHLMCYGNERFTQ 95 (537)
Q Consensus 19 gs~lekAV~KATs~de~PPKeKHVr~II~~T~~~~~si~~i~~~L~~R~~t---snWiVa~KaLIlLHrLLrdG~~~flq 95 (537)
-++.|+.|+.||+.|.++|..+++..|..+|++.. .+..|+..|++|+.+ ++|++++|+|+||++||+.|+++|+.
T Consensus 9 ys~~E~kVreAT~nd~wGp~~~~m~eIa~~T~~~~-~~~eIm~~l~kRL~d~~~k~WR~vyKaL~lLeyLl~nGse~vv~ 87 (150)
T 3onk_A 9 YTEMEGKVREATNNEPWGASSTLMDQISQGTYNFR-EREEILSMIFRRFTEKAGSEWRQIYKALQLLDYLIKHGSERFID 87 (150)
T ss_dssp CCHHHHHHHHHTSSCSSCCCHHHHHHHHHHTTSHH-HHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCHH-HHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 48999999999999999999999999999999864 778999999999754 38999999999999999999999999
Q ss_pred HHHhcCCccc-cccccccCCCCCCCcchHHHHHHHHHHHHH
Q psy16398 96 YLASSNCSLQ-LGNFLDKSGIHGYDMTPFIHRYSRYINEKS 135 (537)
Q Consensus 96 ~L~~~~~if~-LsnF~D~ss~~g~d~s~fIR~YakYLdeRl 135 (537)
+++.+..++. |.+|.-.. ..|.|.+.-||..++.|.+-|
T Consensus 88 ~~r~~~~~i~~L~~F~~~d-~~G~D~G~~VR~kak~l~~LL 127 (150)
T 3onk_A 88 DTRNSINLIRILETFHYID-SQGRDQGINVRTRVKALIELL 127 (150)
T ss_dssp HHHTTHHHHHGGGGCCCBC-TTSCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccccC-CCCCchHHHHHHHHHHHHHHH
Confidence 8876543333 55654322 357889999999999995544
No 8
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=98.74 E-value=2.6e-08 Score=91.36 Aligned_cols=113 Identities=14% Similarity=0.185 Sum_probs=97.2
Q ss_pred HHHHHhhccCCCCCCccccHHHHHHHhcCCCCC-HHHHHHHHHhhhCCCCchhhHHHHHHHHHHhhcCCHhHHHHHHhcC
Q psy16398 23 AKAVCKATTEELIGPKKKHLDYLLHCTNEANVS-IPDLATLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYLASSN 101 (537)
Q Consensus 23 ekAV~KATs~de~PPKeKHVr~II~~T~~~~~s-i~~i~~~L~~R~~tsnWiVa~KaLIlLHrLLrdG~~~flq~L~~~~ 101 (537)
+..|.+||+.+++||----+.+|...|+.+... +.+++..|++|+...+|.|.+|+|-+|-+|++.|+++|.++++++.
T Consensus 13 ~~~V~~ATs~d~~~~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~ 92 (140)
T 1vdy_A 13 SRMIDAVTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNS 92 (140)
T ss_dssp HHHHHHTTCSCSSCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhH
Confidence 456899999999999998899999999987644 4799999999999999999999999999999999999999998764
Q ss_pred C-ccccccccccCC-CCCCCcchHHHHHHHHHHHHH
Q psy16398 102 C-SLQLGNFLDKSG-IHGYDMTPFIHRYSRYINEKS 135 (537)
Q Consensus 102 ~-if~LsnF~D~ss-~~g~d~s~fIR~YakYLdeRl 135 (537)
. +-.+.+|..... ..|.+.+..||.-++=|.+-+
T Consensus 93 ~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll 128 (140)
T 1vdy_A 93 VAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAI 128 (140)
T ss_dssp HHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHH
Confidence 3 455667776533 368889999999999998877
No 9
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=96.61 E-value=0.0049 Score=55.94 Aligned_cols=82 Identities=16% Similarity=0.110 Sum_probs=72.6
Q ss_pred CChhHHHHHHhhccCCCCCCccccHHHHHHHhcCCCCCHHHHHHHHHhhhCCCCchhhHHHHHHHHHHhhcCCHhHHHHH
Q psy16398 18 AGQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYL 97 (537)
Q Consensus 18 ~gs~lekAV~KATs~de~PPKeKHVr~II~~T~~~~~si~~i~~~L~~R~~tsnWiVa~KaLIlLHrLLrdG~~~flq~L 97 (537)
.++.++..|.|||+....-|+--.+-.|....+..+....+.+++|.+|+..+|..|++-+|.+|.-|+..+..+|..++
T Consensus 2 ~~~p~d~~iekAT~~~l~~~dw~~ileicD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~ev 81 (140)
T 3ldz_A 2 ATNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEV 81 (140)
T ss_dssp CCCTTHHHHHHHTCTTSSSCCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CCCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 34678999999999988888888888888888877777789999999999989999999999999999999999998777
Q ss_pred Hh
Q psy16398 98 AS 99 (537)
Q Consensus 98 ~~ 99 (537)
++
T Consensus 82 as 83 (140)
T 3ldz_A 82 CS 83 (140)
T ss_dssp SS
T ss_pred hh
Confidence 53
No 10
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=96.55 E-value=0.0057 Score=56.28 Aligned_cols=84 Identities=17% Similarity=0.128 Sum_probs=74.8
Q ss_pred hcCChhHHHHHHhhccCCCCCCccccHHHHHHHhcCCCCCHHHHHHHHHhhhCCCCchhhHHHHHHHHHHhhcCCHhHHH
Q psy16398 16 SLAGQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQ 95 (537)
Q Consensus 16 sl~gs~lekAV~KATs~de~PPKeKHVr~II~~T~~~~~si~~i~~~L~~R~~tsnWiVa~KaLIlLHrLLrdG~~~flq 95 (537)
...++.++..|.|||+....-|+--.+-.|....+.......+.+++|.+|+..+|..|++-+|.+|.-|+..+...|..
T Consensus 6 ~~~~~~~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~ 85 (149)
T 3g2s_A 6 AMEPETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHD 85 (149)
T ss_dssp CCSCCCHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred CCCCCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 44568899999999999988888888888888888776677899999999999999999999999999999999999988
Q ss_pred HHHh
Q psy16398 96 YLAS 99 (537)
Q Consensus 96 ~L~~ 99 (537)
++++
T Consensus 86 eias 89 (149)
T 3g2s_A 86 EVGK 89 (149)
T ss_dssp HHTS
T ss_pred HHhh
Confidence 7753
No 11
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=96.32 E-value=0.0069 Score=56.36 Aligned_cols=82 Identities=15% Similarity=0.097 Sum_probs=71.5
Q ss_pred CChhHHHHHHhhccCCCCCCccccHHHHHHHhcCCCCCHHHHHHHHHhhhCCCCchhhHHHHHHHHHHhhcCCHhHHHHH
Q psy16398 18 AGQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYL 97 (537)
Q Consensus 18 ~gs~lekAV~KATs~de~PPKeKHVr~II~~T~~~~~si~~i~~~L~~R~~tsnWiVa~KaLIlLHrLLrdG~~~flq~L 97 (537)
....++..|.|||+....-|+--.+-.|....+.......+.+++|.+|+...|..|++-+|.||.-|+..+...|..++
T Consensus 12 ~~~p~~~~IekATs~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~ev 91 (163)
T 1x5b_A 12 TANPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEV 91 (163)
T ss_dssp CCCTTHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCChHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34679999999999988888888888888777776667789999999999988999999999999999999999998776
Q ss_pred Hh
Q psy16398 98 AS 99 (537)
Q Consensus 98 ~~ 99 (537)
++
T Consensus 92 as 93 (163)
T 1x5b_A 92 CS 93 (163)
T ss_dssp TS
T ss_pred hh
Confidence 53
No 12
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=96.21 E-value=0.0069 Score=56.84 Aligned_cols=82 Identities=17% Similarity=0.095 Sum_probs=71.4
Q ss_pred CChhHHHHHHhhccCCCCCCccccHHHHHHHhcCCCCCHHHHHHHHHhhhCCCCchhhHHHHHHHHHHhhcCCHhHHHHH
Q psy16398 18 AGQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYL 97 (537)
Q Consensus 18 ~gs~lekAV~KATs~de~PPKeKHVr~II~~T~~~~~si~~i~~~L~~R~~tsnWiVa~KaLIlLHrLLrdG~~~flq~L 97 (537)
.++.++..|.|||+....-|+-..+-.|....+.......+.+++|.+|++..|-.|++-+|.||.-|+..+...|..++
T Consensus 10 ~~s~~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~ev 89 (171)
T 1juq_A 10 EGESLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEV 89 (171)
T ss_dssp --CCHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred CCCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 35779999999999988888888888888877776667789999999999999999999999999999999989998776
Q ss_pred Hh
Q psy16398 98 AS 99 (537)
Q Consensus 98 ~~ 99 (537)
++
T Consensus 90 as 91 (171)
T 1juq_A 90 GK 91 (171)
T ss_dssp TS
T ss_pred hh
Confidence 53
No 13
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=96.02 E-value=0.014 Score=56.83 Aligned_cols=80 Identities=10% Similarity=0.111 Sum_probs=72.1
Q ss_pred hhHHHHHHhhccCCCCCCccccHHHHHHHhcCCCCCHHHHHHHHHhhhCCCCchhhHHHHHHHHHHhhcCCHhHHHHHHh
Q psy16398 20 QGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYLAS 99 (537)
Q Consensus 20 s~lekAV~KATs~de~PPKeKHVr~II~~T~~~~~si~~i~~~L~~R~~tsnWiVa~KaLIlLHrLLrdG~~~flq~L~~ 99 (537)
+.++..|.|||+....-|+--.+-+|....+.......+.+++|.+|+...|..|++-+|.||.-++..+...|..++++
T Consensus 7 ~~~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias 86 (226)
T 3zyq_A 7 GTFERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVAN 86 (226)
T ss_dssp CHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSS
T ss_pred chHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhcc
Confidence 67999999999999888998888888877777667788999999999999999999999999999999999999887753
No 14
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=96.01 E-value=0.015 Score=53.71 Aligned_cols=80 Identities=20% Similarity=0.113 Sum_probs=69.6
Q ss_pred hhHHHHHHhhccCCCCCCccccHHHHHHHhcCCCCCHHHHHHHHHhhhC-CCCchhhHHHHHHHHHHhhcCCHhHHHHHH
Q psy16398 20 QGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQ-NSSSVVVFKALITIHHLMCYGNERFTQYLA 98 (537)
Q Consensus 20 s~lekAV~KATs~de~PPKeKHVr~II~~T~~~~~si~~i~~~L~~R~~-tsnWiVa~KaLIlLHrLLrdG~~~flq~L~ 98 (537)
+.++..|.|||+....-|+--.+-.|....+.......+.+++|.+|++ ..|..|++-+|.+|.-|+..+.+.|..+++
T Consensus 15 s~~~~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva 94 (157)
T 1elk_A 15 SPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVA 94 (157)
T ss_dssp SHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHT
T ss_pred cHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHh
Confidence 4689999999999888888888888877777666677899999999997 589999999999999999999999988775
Q ss_pred h
Q psy16398 99 S 99 (537)
Q Consensus 99 ~ 99 (537)
+
T Consensus 95 ~ 95 (157)
T 1elk_A 95 S 95 (157)
T ss_dssp S
T ss_pred h
Confidence 3
No 15
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=96.01 E-value=0.01 Score=54.43 Aligned_cols=78 Identities=18% Similarity=0.120 Sum_probs=69.0
Q ss_pred HHHHHHhhccCCCCCCccccHHHHHHHhcCCCCCHHHHHHHHHhhhCCCCchhhHHHHHHHHHHhhcCCHhHHHHHHh
Q psy16398 22 LAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYLAS 99 (537)
Q Consensus 22 lekAV~KATs~de~PPKeKHVr~II~~T~~~~~si~~i~~~L~~R~~tsnWiVa~KaLIlLHrLLrdG~~~flq~L~~ 99 (537)
++..|.|||+....-|+-..+-.|....+.......+.+++|.+|++.+|..|++-+|.+|.-|+..+++.|..++++
T Consensus 2 ~~~~iekATs~~l~~~dw~~~leicD~I~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas 79 (148)
T 1mhq_A 2 LELWLNKATDPSMSEQDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAK 79 (148)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTS
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhh
Confidence 788999999998888888888888877776666678999999999999999999999999999999999999887753
No 16
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=95.89 E-value=0.017 Score=55.86 Aligned_cols=79 Identities=9% Similarity=0.106 Sum_probs=70.9
Q ss_pred hhHHHHHHhhccCCCCCCccccHHHHHHHhcCCCCCHHHHHHHHHhhhCCCCchhhHHHHHHHHHHhhcCCHhHHHHHH
Q psy16398 20 QGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYLA 98 (537)
Q Consensus 20 s~lekAV~KATs~de~PPKeKHVr~II~~T~~~~~si~~i~~~L~~R~~tsnWiVa~KaLIlLHrLLrdG~~~flq~L~ 98 (537)
+.++..|.|||+....-|+-..+-+|....+..+....+.+++|.+|+...|..|++-+|.||.-++..+...|..+++
T Consensus 4 ~~~~~~ie~AT~~~~~~~dw~~~leicd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva 82 (220)
T 1dvp_A 4 SSFCKNLENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVF 82 (220)
T ss_dssp SHHHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHS
T ss_pred chHHHHHHHHcCCCCCCcCHHHHHHHHHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 3589999999999888888888888888888777788999999999999999999999999999999999888887764
No 17
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=95.85 E-value=0.017 Score=53.28 Aligned_cols=82 Identities=13% Similarity=0.065 Sum_probs=71.2
Q ss_pred ChhHHHHHHhhccCCCCCCccccHHHHHHHhcCCCCCHHHHHHHHHhhhC-CCCchhhHHHHHHHHHHhhcCCHhHHHHH
Q psy16398 19 GQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQ-NSSSVVVFKALITIHHLMCYGNERFTQYL 97 (537)
Q Consensus 19 gs~lekAV~KATs~de~PPKeKHVr~II~~T~~~~~si~~i~~~L~~R~~-tsnWiVa~KaLIlLHrLLrdG~~~flq~L 97 (537)
++.++..|.|||+....-|+--.+-.|....+.......+.+++|.+|+. ..|..|++-+|.+|.-|+..+...|..++
T Consensus 14 ~t~~~~~IekATs~~l~~~Dw~~ileicD~In~~~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~ei 93 (152)
T 3rru_A 14 ATSVGHLIEKATFAGVQTEDWGQFMHICDIINTTQDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLI 93 (152)
T ss_dssp GSHHHHHHHHHTCSSCCSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CChHHHHHHHHcCCCCCCccHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 47899999999999988888888888877777666677899999999987 45888888999999999999999999888
Q ss_pred Hhc
Q psy16398 98 ASS 100 (537)
Q Consensus 98 ~~~ 100 (537)
+++
T Consensus 94 ask 96 (152)
T 3rru_A 94 VKK 96 (152)
T ss_dssp SSH
T ss_pred Hhh
Confidence 654
No 18
>3bej_E Nuclear receptor coactivator 1; FXR, BAR, NR1H4, bIle acid receptor, NHR, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: MUF; 1.90A {Homo sapiens} PDB: 1fm9_B* 1k74_B* 1fm6_B* 1p8d_C* 1rdt_B* 1nrl_C* 3ipq_B* 3ips_C* 3ipu_C* 4dm6_E* 4dm8_C* 3kmg_B* 2hfp_B* 1k7l_B*
Probab=50.23 E-value=5.4 Score=25.98 Aligned_cols=12 Identities=25% Similarity=0.429 Sum_probs=10.0
Q ss_pred HHHHHHhhcCCH
Q psy16398 80 ITIHHLMCYGNE 91 (537)
Q Consensus 80 IlLHrLLrdG~~ 91 (537)
-+|||||++|.|
T Consensus 13 kILHrLLQ~~sP 24 (26)
T 3bej_E 13 KILHRLLQEGSP 24 (26)
T ss_pred HHHHHHHHcCCC
Confidence 468999999965
No 19
>2prg_C Nuclear receptor coactivator SRC-1, peroxisome proliferator activated receptor gamma; complex (thiazolidinedione/receptor), ligand-binding domain; HET: BRL; 2.30A {Homo sapiens} SCOP: j.112.1.1
Probab=26.49 E-value=20 Score=30.01 Aligned_cols=11 Identities=27% Similarity=0.531 Sum_probs=9.7
Q ss_pred HHHHHhhcCCH
Q psy16398 81 TIHHLMCYGNE 91 (537)
Q Consensus 81 lLHrLLrdG~~ 91 (537)
+||||||+|.|
T Consensus 67 ILHrLLQ~gSP 77 (88)
T 2prg_C 67 ILHRLLQEGSP 77 (88)
T ss_dssp HHHHHHHSSCC
T ss_pred HHHHHHhcCCh
Confidence 68999999975
Done!