RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16398
(537 letters)
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha
helices repeats, coiled-coil, endocytosis/exocytosis
complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2
a.118.9.3
Length = 299
Score = 297 bits (762), Expect = 6e-98
Identities = 229/297 (77%), Positives = 257/297 (86%), Gaps = 11/297 (3%)
Query: 1 MAGQTINDRLLAAKHSLAGQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLA 60
MAGQTINDRLLAA+HSLAGQGLAK+VCKATTEE IGPKKKHLDYL+HC NE NVSIP LA
Sbjct: 3 MAGQTINDRLLAARHSLAGQGLAKSVCKATTEECIGPKKKHLDYLVHCANEPNVSIPHLA 62
Query: 61 TLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYLASSNCSLQLGNFLDKSGI----- 115
LLIER+QN++ VVV+K+LIT HHLM YGNERF QYLASSN + L +FLDK +
Sbjct: 63 NLLIERSQNANWVVVYKSLITTHHLMAYGNERFMQYLASSNSTFNLSSFLDKGTVQDGGM 122
Query: 116 ------HGYDMTPFIHRYSRYINEKSLSYRTVAFDFCKVKRGKEDGLLRTMPANKLLKSL 169
GYDM+PFI RY++Y+NEKSLSYR +AFDFCKVKRGKE+G LR+M A KLLK+L
Sbjct: 123 GVPGGRMGYDMSPFIRRYAKYLNEKSLSYRAMAFDFCKVKRGKEEGSLRSMNAEKLLKTL 182
Query: 170 PVLQSQIDALLEFDCNNSDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKK 229
PVLQ+Q+DALLEFDC ++DL NGVIN +FMLLFRDLIRLFA YND IINLLEKYFDMNKK
Sbjct: 183 PVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYNDGIINLLEKYFDMNKK 242
Query: 230 QCKEALDLYKKFLIRMDRVAEFLKVAENVGIDKGDIPDLTKAPSSLLEALEQHLATL 286
++ALDLYKKFL+RMDRV EFLKVAENVGIDKGDIPDLTKAPSSLL+ALEQHLATL
Sbjct: 243 HARDALDLYKKFLVRMDRVGEFLKVAENVGIDKGDIPDLTKAPSSLLDALEQHLATL 299
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis,
endobrevin, synaptobrevin, VAMP2, VAMP3, AP180,
membrane, adaptor protein; 1.70A {Rattus norvegicus}
PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Length = 271
Score = 270 bits (692), Expect = 8e-88
Identities = 181/265 (68%), Positives = 219/265 (82%), Gaps = 1/265 (0%)
Query: 1 MAGQTINDRLLAAKHSLAGQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLA 60
M+GQ++ DR+ AA+HS+ G ++K VCKATT E++GPKKKHLDYL+ CTNE NV+IP LA
Sbjct: 8 MSGQSLTDRITAAQHSVTGSAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLA 67
Query: 61 TLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYLASSNCSLQLGNFLDKSGIHGYDM 120
L ERT NSS VVVFK+LIT HHLM YGNERF QYLAS N L NFLDKSG+ GYDM
Sbjct: 68 DSLFERTTNSSWVVVFKSLITTHHLMVYGNERFIQYLASRNTLFNLSNFLDKSGLQGYDM 127
Query: 121 TPFIHRYSRYINEKSLSYRTVAFDFCKVKRGKEDGLLRTMPANKLLKSLPVLQSQIDALL 180
+ FI RYSRY+NEK++SYR VAFDF KVKRG + G++RTM KLLK++P++Q+Q+DALL
Sbjct: 128 STFIRRYSRYLNEKAVSYRQVAFDFTKVKRGAD-GVMRTMNTEKLLKTVPIIQNQMDALL 186
Query: 181 EFDCNNSDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKKQCKEALDLYKK 240
+F+ N+++L NGVIN AFMLLF+D IRLFA YN+ IINLLEKYFDM K QCKE LD+YKK
Sbjct: 187 DFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKK 246
Query: 241 FLIRMDRVAEFLKVAENVGIDKGDI 265
FL RM R++EFLKVAE VGID+GDI
Sbjct: 247 FLTRMTRISEFLKVAEQVGIDRGDI 271
>3zym_A Phosphatidylinositol-binding clathrin assembly PR
vesicle-associated membrane protein...; endocytosis,
synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A
{Rattus norvegicus}
Length = 310
Score = 269 bits (689), Expect = 8e-87
Identities = 183/293 (62%), Positives = 230/293 (78%), Gaps = 4/293 (1%)
Query: 1 MAGQTINDRLLAAKHSLAGQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLA 60
M+GQ++ DR+ AA+HS+ G ++K VCKATT E++GPKKKHLDYL+ CTNE NV+IP LA
Sbjct: 8 MSGQSLTDRITAAQHSVTGSAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLA 67
Query: 61 TLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYLASSNCSLQLGNFLDKSGIHGYDM 120
L ERT NSS VVVFK+LIT HHLM YGNERF QYLAS N L NFLDKSG+ GYDM
Sbjct: 68 DSLFERTTNSSWVVVFKSLITTHHLMVYGNERFIQYLASRNTLFNLSNFLDKSGLQGYDM 127
Query: 121 TPFIHRYSRYINEKSLSYRTVAFDFCKVKRGKEDGLLRTMPANKLLKSLPVLQSQIDALL 180
+ FI RYSRY+NEK++SYR VAFDF KVKRG + G++RTM KLLK++P++Q+Q+DALL
Sbjct: 128 STFIRRYSRYLNEKAVSYRQVAFDFTKVKRGAD-GVMRTMNTEKLLKTVPIIQNQMDALL 186
Query: 181 EFDCNNSDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKKQCKEALDLYKK 240
+F+ N+++L NGVIN AFMLLF+D IRLFA YN+ IINLLEKYFDM K QCKE LD+YKK
Sbjct: 187 DFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKK 246
Query: 241 FLIRMDRVAEFLKVAENVGIDKGDIPDLTKAPSSLLEALEQHLATLEGKKSAA 293
FL RM R++EFLKVAE VGID+ D++ + S ++ + + +EG K+
Sbjct: 247 FLTRMTRISEFLKVAEQVGIDR---GDISGSGSGHMDRVRNLQSEVEGVKNIM 296
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.8 bits (149), Expect = 4e-10
Identities = 52/385 (13%), Positives = 114/385 (29%), Gaps = 112/385 (29%)
Query: 27 CKATTEELIGPKKKHLD--YLLHCTNEANVSIPDLATLLIERTQNSSSVVVFKALITIHH 84
K + D + +S ++ +++ + S ++ +F L++
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSI-LSKEEIDHIIMSKDAVSGTLRLFWTLLS--- 73
Query: 85 LMCYGNERFTQYLASSNCSLQLG-NFLDKSGIHGYDMTPFIHRYSRYINEKSLSYRTVAF 143
E +++ L++ FL S I P + YI ++ Y
Sbjct: 74 ---KQEEMVQKFVEEV---LRINYKFL-MSPIKTEQRQPSM-MTRMYIEQRDRLYNDNQV 125
Query: 144 DFCK--VKRGKE-----DGLLRTMPANKLL--------KSLPVLQSQIDALLEFDCNNSD 188
F K V R + LL PA +L K+ + + C +
Sbjct: 126 -FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT--WVALDV-------CLSYK 175
Query: 189 LRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEK-YFDMNKKQCKEALDLYKKFLIRMDR 247
++ + F L ++ ++++ +L+K + ++
Sbjct: 176 VQCKMDFKIFWLNLKNCNS-----PETVLEMLQKLLYQIDPNWTSR-------------- 216
Query: 248 VAEFLKVAENVGIDKGDIPDLTKAPSSLLEALEQHLATLEGKKSAAGTPTQASHRN---- 303
D + + +++ L L K + N
Sbjct: 217 ------------------SDHSSNIKLRIHSIQAELRRLLKSKP---------YENCLLV 249
Query: 304 --DVKSG--VNSFS-------TT--SSAFSAVSGA-----DLEESLKKQALAEEEAILNQ 345
+V++ N+F+ TT +S A L+ E +++L +
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 346 YKAKVSSPTSSMPSNAASTNPFLAS 370
Y + +P +TNP S
Sbjct: 310 Y---LDCRPQDLPREVLTTNPRRLS 331
Score = 52.9 bits (126), Expect = 2e-07
Identities = 65/431 (15%), Positives = 121/431 (28%), Gaps = 131/431 (30%)
Query: 125 HRYSRYINEKSLSYRTVAFDFCKVKRGKEDGLLRTMPANKLLKSL-PVLQS-QIDALLEF 182
H E Y+ + F ED + + +L +ID ++
Sbjct: 5 HHMDFETGEHQYQYKDILSVF-------EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS 57
Query: 183 DCNNSDLRNGVINGAFMLLFRDLIRLFAGYNDSII-----NLLEK-Y-FDMN--KKQCKE 233
S LF + + ++ +L Y F M+ K + ++
Sbjct: 58 KDAVSGTL---------RLF-WTLLS---KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ 104
Query: 234 ALDLYKKFLIRMDRVAEFLKVAENVGIDKGDIPDLTKAPSSLLEALEQHLATLEGKKSAA 293
+ + ++ + DR+ +N K ++ L L Q L L
Sbjct: 105 PSMMTRMYIEQRDRLYN-----DNQVFAKYNVSRLQP-----YLKLRQALLELR------ 148
Query: 294 GTPTQASHRNDVKSGVNSFSTTSSAFSAVSGADLEE---------SLKKQALAEEE-AIL 343
+N + GV T A ++ +LK E +L
Sbjct: 149 ------PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202
Query: 344 NQYKAKVSSPTSSMPSNAASTNPFLASPTQPIVDLFGSAPASVEPVQTSKP-SDDLLQLG 402
+ ++ +S ++++ + S + L SKP + LL L
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL-----------KSKPYENCLLVL- 250
Query: 403 NPFVDDFTGAAAPGSQPPVNNAWTSNGFNMN-----TTSVQQDSFVSDKAFSSVFGDLDP 457
+ V NA N FN++ TT + V+D L
Sbjct: 251 ----LN------------VQNAKAWNAFNLSCKILLTT---RFKQVTD--------FLSA 283
Query: 458 SKTMPPPSTVPGALGANYRPMGQSMTPFYTDNAFPAQPVGAPRMPMMPSSGGTPLMGSPR 517
+ T ++TP + + + P L PR
Sbjct: 284 ATTTHISLD----------HHSMTLTPDEVKSLL-LKYLD-----CRPQD----L---PR 320
Query: 518 QVPSGQPPVAS 528
+V + P S
Sbjct: 321 EVLTTNPRRLS 331
Score = 47.9 bits (113), Expect = 8e-06
Identities = 71/461 (15%), Positives = 137/461 (29%), Gaps = 118/461 (25%)
Query: 15 HSLAGQG---LAKAVCKATTEELIGPKKKHLDYL-LHCTNEANVSIPDLATLLIERTQNS 70
+ G G +A VC + + K +L L N + L LL + N
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIF--WLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 71 SSVVVFKALITIHHLMCYGNERFTQYLASS---NCSLQLGNFLDKSGIHGYDM---TPFI 124
+S I + + L S NC L L N + + +++
Sbjct: 214 TSRS--DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271
Query: 125 HRYSRYINEKSLSYRT-VAFDFCKVKRGKED--GLLRT---MPANKL----LKSLPVLQS 174
R+ + + S + T ++ D + ++ LL L L + P S
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331
Query: 175 QIDALLE--------FDCNNSDLRNGVINGAFMLL----FRDLIRLFAGYNDS------- 215
I + + N D +I + +L +R + + + S
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 216 ---------------IINLLEKYFDMNKKQCKEAL---DLYKKFLIRMDRVAEFL--KVA 255
++N L KY + K+ + + +Y + ++++ L +
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA-LHRSIV 450
Query: 256 ENVGIDKG-DIPDLTKAPSS--LLEALEQHLATLEGKKSAAGTPT--------QASHRND 304
++ I K D DL + HL +E + + R+D
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510
Query: 305 VKSGVNSFSTTSSAFSAVSG-ADLEESLKKQALAEEEAILNQYKAKV--SSPTSSMPSNA 361
S+A++A + + LK YK + + P NA
Sbjct: 511 -----------STAWNASGSILNTLQQLKF------------YKPYICDNDPKYERLVNA 547
Query: 362 ASTNPFLASPTQPIVDLFGSAPASVEPVQTSKPSDDLLQLG 402
FL + ++ DLL++
Sbjct: 548 ILD--FLPKIEENLI---------------CSKYTDLLRIA 571
Score = 43.3 bits (101), Expect = 2e-04
Identities = 36/278 (12%), Positives = 65/278 (23%), Gaps = 72/278 (25%)
Query: 10 LLAAKHSLAGQGLAKAVCK------ATTEELIGPKKKHLDYLLHCTNEA-----NVSIPD 58
LL Q L + V + E I D H + S+
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 59 LATLLIERTQNSSSVVVFK--ALITIHHLMCY-GN------ERFTQYLASSNCSLQLGNF 109
L E + + VF A I L + L ++
Sbjct: 366 LEPA--EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY-SLVEKQPK 422
Query: 110 LDKSGIHGYDM--------TPFIHR--YSRYINEKSLS-------------YRTVAFDFC 146
I + +HR Y K+ Y +
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 147 KVKRGKEDGLLRTMPANKLLKSLPVLQSQIDALLEFDCNNSDLRNGVINGAFMLLFRDLI 206
++ + L R + L+ +I D + ++N + L
Sbjct: 483 NIEHPERMTLFR-----MVFLDFRFLEQKI----RHDSTAWNASGSILN-----TLQQLK 528
Query: 207 RLFAGYNDSIINLLEKYFDMNKKQCKEALDLYKKFLIR 244
Y + Y N + + ++ FL +
Sbjct: 529 F----Y--------KPYICDNDPKYERLVNAILDFLPK 554
Score = 35.2 bits (80), Expect = 0.056
Identities = 27/164 (16%), Positives = 51/164 (31%), Gaps = 37/164 (22%)
Query: 41 HLDYLLHCTNEANVSIPDLATLLIERTQNSSSVVVFKALITI----------HHLMCYGN 90
+L+ + NE L +++ + + HHL +
Sbjct: 432 YLELKVKLENE-----YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486
Query: 91 -ERFTQYLASSNCSLQLGNFLDKSGIHGYDMTPF------------IHRYSRYINEKSLS 137
ER T + L FL++ H D T + + Y YI +
Sbjct: 487 PERMTLF---RMVFLDF-RFLEQKIRH--DSTAWNASGSILNTLQQLKFYKPYICDNDPK 540
Query: 138 YRTVAFDFCKVKRGKEDGLLRTMPANKLLKSLPVLQSQIDALLE 181
Y + E+ L+ + LL+ L ++ +A+ E
Sbjct: 541 YERLVNAILDFLPKIEENLICS-KYTDLLRI--ALMAEDEAIFE 581
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Length = 148
Score = 56.9 bits (137), Expect = 6e-10
Identities = 22/113 (19%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 24 KAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNSSS--VVVFKALIT 81
V +AT+ + GP + + T V+ ++ +++ +R + V+KA+
Sbjct: 26 IKVREATSNDPWGPSSSLMSEIADLTYNV-VAFSEIMSMIWKRLNDHGKNWRHVYKAMTL 84
Query: 82 IHHLMCYGNERFTQYLASSNCSLQ-LGNF--LDKSGIHGYDMTPFIHRYSRYI 131
+ +L+ G+ER +Q + ++Q L +F +D+ G D + ++ +
Sbjct: 85 MEYLIKTGSERVSQQCKENMYAVQTLKDFQYVDRD---GKDQGVNVREKAKQL 134
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.4 bits (146), Expect = 1e-09
Identities = 79/478 (16%), Positives = 147/478 (30%), Gaps = 155/478 (32%)
Query: 91 ERFTQYLA------------SSNCSLQLGNFLDKSGIHGYDMTPFIHRYSRYINEKSLS- 137
E+F + L ++ L +G FL ++ S + +
Sbjct: 35 EQFNKILPEPTEGFAADDEPTTPAEL-VGKFLG-----------YV---SSLVEPSKVGQ 79
Query: 138 YRTV------AFDFCKVKRGKE-DGLLRTMPAN---KLLKSLPVLQSQIDALLEFD---- 183
+ V F+ G + L + L+K+ ++++ I A +
Sbjct: 80 FDQVLNLCLTEFE-NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD 138
Query: 184 -CNNSDLRNGVINGA--FMLLF----------RDLIRLFAGYNDSIINLLEKYFDMNKKQ 230
+NS L V G + +F +L L+ Y+ + +L++ + +
Sbjct: 139 KKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSEL 198
Query: 231 CKEALDLYKKFLIRMDRVAEFLKVAENVGIDKGDIPD---LTKAPSSL----LEALEQHL 283
+ LD K F ++ + E+L+ + + PD L P S + L ++
Sbjct: 199 IRTTLDAEKVFTQGLN-ILEWLE-------NPSNTPDKDYLLSIPISCPLIGVIQLAHYV 250
Query: 284 ATLEGKKSAAGTPTQASHRNDVKSGVNSFSTTS----SAFSAVSGADLEESLKKQALAEE 339
T K TP + G + S +A A++ D ES
Sbjct: 251 VTA---KLLGFTPGEL---RSYLKGA---TGHSQGLVTA-VAIAETDSWESFFVSVRKAI 300
Query: 340 EAILNQ-YKAKVSSPTSSMPSN--AASTNPFLASPTQPIVDLFGSAPASVEP----VQTS 392
+ + + P +S+P + S P+ P++ + V+ +
Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS-PMLSISNLTQEQVQDYVNKTNSH 359
Query: 393 KPSDDLLQLGNPFVDDFTGAAAPGSQPPVNNAWTSNGFNMNTTSVQQDSFVSDKAFSSVF 452
P+ +++ VN A + V V
Sbjct: 360 LPAGKQVEISL-----------------VNGA---------------KNLV-------VS 380
Query: 453 GDLDPSKTMPPPSTVPGALGANYR----PMG--QSMTPF-----YTDNAFPAQPVGAP 499
G PP ++ G L R P G QS PF N F PV +P
Sbjct: 381 G---------PPQSLYG-LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF--LPVASP 426
Score = 36.6 bits (84), Expect = 0.024
Identities = 66/443 (14%), Positives = 116/443 (26%), Gaps = 176/443 (39%)
Query: 166 LKSLPV----------LQSQIDALLEF--------DCNNSDLRNGVINGAFMLLFRDLIR 207
K LP + + + +F + + + V+N L +
Sbjct: 38 NKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLN----LCLTEFEN 93
Query: 208 LFAGYND--SIINLLEKYFDMNKKQCKEALDLYKKFLIRMDRVAEFLKVAENVGIDKGDI 265
+ ND ++ L + D + KE + Y I R
Sbjct: 94 CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKR------------------ 135
Query: 266 PDLTKAPSSLLEALEQHLATLEGKKSAA---GTPTQASHRNDVKSGVNSFSTTSSAFSAV 322
P K+ S+L A+ + A L A G Q G T F
Sbjct: 136 PFDKKSNSALFRAVGEGNAQL-----VAIFGG---Q---------G-----NTDDYFE-- 171
Query: 323 SGADLEE------SLKKQALAEEEAILNQYKAKVSSPTSSMPSNAASTNPFLASP-TQPI 375
+L + L + L++ + + + + + +L +P P
Sbjct: 172 ---ELRDLYQTYHVLVGDLIKFSAETLSEL-IRTTLDAEKVFTQGLNILEWLENPSNTPD 227
Query: 376 VDLFGSAPASVEPVQTSKPSDDLLQLGN-----------P--FVDDFTG----------A 412
D S P S P ++QL + P G A
Sbjct: 228 KDYLLSIPISC-------PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 413 AAPGSQPPVNNAWTSNGFNMNTTSVQQDSF----VSDKAFSSVFGDLDPSKTMPPPSTVP 468
A +W S F ++ F +A+ P +++P
Sbjct: 281 VAIAETD----SWES--FFVSVRKAITVLFFIGVRCYEAY--------------PNTSLP 320
Query: 469 GALGANYRPMGQSMTPFYTDNAFPAQPVGAPRMPMMPSSGGT---------------P-- 511
++ + + G P PM+ S T P
Sbjct: 321 PSILEDSLENNE----------------GVPS-PMLSISNLTQEQVQDYVNKTNSHLPAG 363
Query: 512 ------LMGSPRQ-VPSGQPPVA 527
L+ + V SG PP +
Sbjct: 364 KQVEISLVNGAKNLVVSG-PPQS 385
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A
{Homo sapiens} PDB: 2qy7_A 2v8s_E
Length = 176
Score = 55.8 bits (134), Expect = 2e-09
Identities = 26/138 (18%), Positives = 53/138 (38%), Gaps = 7/138 (5%)
Query: 1 MAGQTINDRLLAAKHSLAGQGLA-KAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDL 59
+ + + + A + + V +AT ++ GP + + + T P+L
Sbjct: 13 LNMWKVRELVDKATNVVMNYSEIESKVREATNDDPWGPSGQLMGEIAKATFMYE-QFPEL 71
Query: 60 ATLLIERTQNSS---SVVVFKALITIHHLMCYGNERFTQYLASSNCSLQ-LGNFLDKSGI 115
+L R + V+K+L+ + +L+ G+ER L+ L N+
Sbjct: 72 MNMLWSRMLKDNKKNWRRVYKSLLLLAYLIRNGSERVVTSAREHIYDLRSLENYHFVDE- 130
Query: 116 HGYDMTPFIHRYSRYINE 133
HG D I + + + E
Sbjct: 131 HGKDQGINIRQKVKELVE 148
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces
cerevisiae} PDB: 3onl_A
Length = 150
Score = 45.4 bits (107), Expect = 5e-06
Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 8/115 (6%)
Query: 24 KAVCKATTEELIGPKKKHLDYLLHCTN--EANVSIPDLATLLIERTQNSSSVVVFKALIT 81
V +AT E G +D + T I + S ++KAL
Sbjct: 14 GKVREATNNEPWGASSTLMDQISQGTYNFREREEILSMIFRRFTEKAGSEWRQIYKALQL 73
Query: 82 IHHLMCYGNERFTQYLASSNCSLQ-LGNF--LDKSGIHGYDMTPFIHRYSRYINE 133
+ +L+ +G+ERF +S ++ L F +D G D + + + E
Sbjct: 74 LDYLIKHGSERFIDDTRNSINLIRILETFHYIDS---QGRDQGINVRTRVKALIE 125
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus}
SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Length = 144
Score = 39.2 bits (91), Expect = 6e-04
Identities = 20/111 (18%), Positives = 48/111 (43%), Gaps = 5/111 (4%)
Query: 26 VCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNSSS--VVVFKALITIH 83
V +AT+ + GP + + T + ++ +++ +R + V+KA+ +
Sbjct: 10 VREATSNDPWGPSSSLMSEIADLTYNVV-AFSEIMSMIWKRLNDHGKNWRHVYKAMTLME 68
Query: 84 HLMCYGNERFTQYLASSNCSLQ-LGNFLDKSGIHGYDMTPFIHRYSRYINE 133
+L+ G+ER +Q + ++Q L +F G D + ++ +
Sbjct: 69 YLIKTGSERVSQQCKENMYAVQTLKDF-QYVDRDGKDQGVNVREKAKQLVA 118
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 38.9 bits (90), Expect = 0.002
Identities = 15/69 (21%), Positives = 19/69 (27%)
Query: 457 PSKTMPPPSTVPGALGANYRPMGQSMTPFYTDNAFPAQPVGAPRMPMMPSSGGTPLMGSP 516
+T A P G+ P P + P M P G +
Sbjct: 149 TVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPG 208
Query: 517 RQVPSGQPP 525
R P G PP
Sbjct: 209 RGTPMGMPP 217
Score = 33.1 bits (75), Expect = 0.16
Identities = 12/69 (17%), Positives = 16/69 (23%), Gaps = 3/69 (4%)
Query: 457 PSKTMPPPSTVPGALGANYRPMGQSMTPFYTDNAFPAQPVGAPRMPMMPSSGGTPLMGSP 516
+ M P A A + P P + P M G
Sbjct: 138 SQQVMTPQGRGTVAAAAAAATASIAGAPTQY---PPGRGGPPPPMGRGAPPPGMMGPPPG 194
Query: 517 RQVPSGQPP 525
+ P G P
Sbjct: 195 MRPPMGPPM 203
Score = 31.5 bits (71), Expect = 0.58
Identities = 11/69 (15%), Positives = 16/69 (23%)
Query: 457 PSKTMPPPSTVPGALGANYRPMGQSMTPFYTDNAFPAQPVGAPRMPMMPSSGGTPLMGSP 516
P+ P V G P G+ A + + P P+
Sbjct: 124 PAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGA 183
Query: 517 RQVPSGQPP 525
PP
Sbjct: 184 PPPGMMGPP 192
Score = 30.8 bits (69), Expect = 0.99
Identities = 14/79 (17%), Positives = 22/79 (27%), Gaps = 2/79 (2%)
Query: 457 PSKTMPPPSTVPGALGANYRPMGQSMTPFYTDNAFPAQPVGAPRMPMMPSSGGTPLMGSP 516
P +P + P G + P+Q V P+ ++ S
Sbjct: 104 PGIGRAAGRGIPAGVPMPQAPAG--LAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASI 161
Query: 517 RQVPSGQPPVASTQLDPFG 535
P+ PP P G
Sbjct: 162 AGAPTQYPPGRGGPPPPMG 180
Score = 30.4 bits (68), Expect = 1.1
Identities = 17/86 (19%), Positives = 19/86 (22%), Gaps = 12/86 (13%)
Query: 460 TMPPPSTVPGALGANYR----PMGQSMTPFYTDNAFPAQPVGAP--------RMPMMPSS 507
P P L R P Q MTP A P
Sbjct: 116 AGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGP 175
Query: 508 GGTPLMGSPRQVPSGQPPVASTQLDP 533
G+P G PP + P
Sbjct: 176 PPPMGRGAPPPGMMGPPPGMRPPMGP 201
Score = 28.8 bits (64), Expect = 3.5
Identities = 17/74 (22%), Positives = 21/74 (28%), Gaps = 9/74 (12%)
Query: 457 PSKTMPPPSTVPGALGANYRPMGQSMTPFYTDNAFPA------QPVGAPRMPMMPSSGGT 510
+ P+ P G PMG+ P P P+G P P
Sbjct: 158 TASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPP 217
Query: 511 PLMGSPRQVPSGQP 524
P M P P G
Sbjct: 218 PGMRPP---PPGMR 228
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 38.5 bits (89), Expect = 0.007
Identities = 19/139 (13%), Positives = 39/139 (28%), Gaps = 7/139 (5%)
Query: 402 GNPFVDDFTGAAAPGSQPPVNNAWTSNGFNMNTTSVQQDSFVSDKAFSSVFGDLDPSKTM 461
+ V+ P+ ++ +++ T+ + + +G+ S
Sbjct: 1476 ESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGF 1535
Query: 462 PPPSTVPGALGANYRPMGQSMTPF------YTDNAFPAQPVGAPRMPMMPSSGGTPLMGS 515
S Y P + +P + + P P +P P + + S
Sbjct: 1536 GVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1595
Query: 516 PRQVP-SGQPPVASTQLDP 533
P P S S P
Sbjct: 1596 PSYSPTSPSYSPTSPSYSP 1614
Score = 28.1 bits (62), Expect = 9.6
Identities = 38/178 (21%), Positives = 55/178 (30%), Gaps = 30/178 (16%)
Query: 351 SSPTSSMPSNAASTNPFLASPTQPIVDLFGSAPASVEPVQTSKPSDDLLQLGNPFVDDFT 410
+SPT S S A S SPT P +P S TS +P
Sbjct: 1545 TSPTYSPTSPAYSPTSPSYSPTSP-----SYSPTSPSYSPTSPSYSPTSPSYSP------ 1593
Query: 411 GAAAPGSQPPVNNAWTSNGFNMNTTSVQQDSFVSDKAFSSVFGDLDPSKTMPPPSTVP-G 469
+P P TS ++ + S S ++S P+ P++
Sbjct: 1594 --TSPSYSP------TSPSYSPTSPSYSPTS----PSYSPTSPSYSPTSPSYSPTSPSYS 1641
Query: 470 ALGANYRPMGQSMTP---FYTDNAFPAQPVGAPRMPMMPSSGGTPLM---GSPRQVPS 521
+Y P S +P Y+ + P P PS T SP P+
Sbjct: 1642 PTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPT 1699
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken
structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Arabidopsis thaliana} PDB:
2dcp_A
Length = 140
Score = 34.6 bits (79), Expect = 0.027
Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 24 KAVCKATTEELIGPKKKHLDYLLHCTNEANVSI-PDLATLLIERTQNSSSVVVFKALITI 82
+ + T++E L+ + ++VSI + + +++R N S +V KAL I
Sbjct: 14 RMIDAVTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLI 73
Query: 83 HHLMCYGNERFTQYL 97
+ + F + +
Sbjct: 74 KYAVGKSGSEFRREM 88
>2r4v_A XAP121, chloride intracellular channel protein 2; chloride
intracellular channels, CLIC2, pore-forming protein
ryanodine receptor, chloride channel; HET: GSH; 1.85A
{Homo sapiens} PDB: 2r5g_A 2per_A*
Length = 247
Score = 34.5 bits (79), Expect = 0.066
Identities = 20/152 (13%), Positives = 36/152 (23%), Gaps = 21/152 (13%)
Query: 122 PFIHRYSRYINEKSLSYRTVAFDFCKVKRGKEDGLLRTMPANKLLKSLPVL--------Q 173
PF R + K + + D K + L P P L
Sbjct: 31 PFCQRLFMILWLKGVKFNVTTVDM----TRKPEELKDLAPGTN----PPFLVYNKELKTD 82
Query: 174 SQI--DALLEFDCNNSDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKKQC 231
+ L + + +L F+ Y I N ++ +K
Sbjct: 83 FIKIEEFLEQTLAPPRYPHLSPKYKESFDVGCNLFAKFSAY---IKNTQKEANKNFEKSL 139
Query: 232 KEALDLYKKFLIRMDRVAEFLKVAENVGIDKG 263
+ +L AE + +
Sbjct: 140 LKEFKRLDDYLNTPLLDEIDPDSAEEPPVSRR 171
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.092
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 26/56 (46%)
Query: 332 KKQALAEEEAILNQYKAKVSSPTSSMPSNAASTNPFLASPTQPIVDLFGSAPASVE 387
+KQAL + +A L Y + S+ P LA + A++E
Sbjct: 18 EKQALKKLQASLKLY-----ADDSA---------PALA------IK------ATME 47
>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding
protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A
1jh4_A
Length = 144
Score = 30.6 bits (68), Expect = 0.64
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 492 PAQPVGAPRMPMMPSSGGTPLMGSPRQVPSGQPPVASTQ 530
+ P + +P + +P+Q + QP V Q
Sbjct: 4 GSAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQ 42
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 31.3 bits (70), Expect = 1.0
Identities = 11/58 (18%), Positives = 16/58 (27%), Gaps = 1/58 (1%)
Query: 476 RPMGQSMTPFYTDNAFPAQPVGAPRMPMMPSSGGTPLMGSPRQVPSGQPPVASTQLDP 533
R Q+ + NA P Q P P++ G P + Q
Sbjct: 7 RVYPQAQLQYGQ-NATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLT 63
Score = 29.4 bits (65), Expect = 3.5
Identities = 17/120 (14%), Positives = 25/120 (20%), Gaps = 6/120 (5%)
Query: 411 GAAAPGSQPPVNNAWTSNGFNMNTTSVQQDSFVSDKAFSSVFGDLDPSKTMPPPSTVPGA 470
G A Q P S Q A S+ +
Sbjct: 17 GQNATPLQQP-AQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQ 75
Query: 471 LGANYRPMGQSMTPFYTDNAF-----PAQPVGAPRMPMMPSSGGTPLMGSPRQVPSGQPP 525
+ M P NA+ P Q + P + S + +P
Sbjct: 76 ATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPM 135
Score = 29.4 bits (65), Expect = 3.5
Identities = 11/73 (15%), Positives = 16/73 (21%), Gaps = 3/73 (4%)
Query: 461 MPPPSTVPGALGANYRPMGQSMTPFYTDNAFPAQPVGAPRMPMMPSSGGTPLMGSPRQVP 520
P + P G + PAQ ++ +S VP
Sbjct: 33 QDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDM---HLHNVP 89
Query: 521 SGQPPVASTQLDP 533
P P
Sbjct: 90 LVDPNAYMQPQVP 102
>3r9p_A ACKA; ssgcid, seattle structural genomics center for infectious DI
acetate kinase, transferase; HET: PGE; 1.90A
{Mycobacterium avium subsp} PDB: 3p4i_A 4dq8_A
Length = 391
Score = 30.9 bits (71), Expect = 1.0
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 240 KF-LIRMDRVAEFLK-VAENVGIDKGDIPDLTKAPSSLLEALEQH 282
KF L+ + + E +G + +PD A + L
Sbjct: 25 KFQLVDPEFGVAASTGIVERIGEESSPVPDHDAALRRAFDMLAGD 69
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 30.2 bits (68), Expect = 1.1
Identities = 7/51 (13%), Positives = 15/51 (29%), Gaps = 2/51 (3%)
Query: 380 GSAPASVEPVQTSKPSDDLLQLGNPFVDDFTGAAAPGSQPPVNNAWTSNGF 430
G ++P + + ++ G V ++ W N F
Sbjct: 1 GPGSGYLDPFPPEERPEVRVKEGKGMV--LLCDPPYHFPDDLSYRWLLNEF 49
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25,
CFIM68, CPSF5, CPSF6, CPSF, 3' END processing,
processing, cleavage factor; 2.90A {Homo sapiens} PDB:
3q2t_C
Length = 229
Score = 30.5 bits (68), Expect = 1.2
Identities = 13/68 (19%), Positives = 15/68 (22%), Gaps = 5/68 (7%)
Query: 457 PSKTMPPPSTVPGALGANYRPMGQSMTPFYTDNAFPAQPVGAPRMPMMPSSGGTPLMGSP 516
+ + PG P G FP G R P GG P
Sbjct: 166 GQMSGEGKAGPPGGSSRAAFPQGGRGRGR-----FPGAVPGGDRFPGPAGPGGPPPPFPA 220
Query: 517 RQVPSGQP 524
Q
Sbjct: 221 GQTHHHHH 228
Score = 29.7 bits (66), Expect = 1.9
Identities = 12/68 (17%), Positives = 15/68 (22%), Gaps = 2/68 (2%)
Query: 458 SKTMPPPSTVPGALGANYRPMGQSMTPFYTDNAFPAQPVGAPRMPMMPSSGGTPLMGSPR 517
S+ + G A P P P G G P
Sbjct: 159 SRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGP--GGPPP 216
Query: 518 QVPSGQPP 525
P+GQ
Sbjct: 217 PFPAGQTH 224
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis
complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Length = 157
Score = 29.1 bits (65), Expect = 2.0
Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 1/79 (1%)
Query: 22 LAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNSSSV-VVFKALI 80
+ + + KAT L + NE D + +R + + V AL
Sbjct: 17 VGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALT 76
Query: 81 TIHHLMCYGNERFTQYLAS 99
+ + RF +AS
Sbjct: 77 VLETCVKNCGHRFHVLVAS 95
>1z9h_A Membrane-associated prostaglandin E synthase-2; membran associated
protein, indomethacin, isomerase; HET: IMN; 2.60A
{Macaca fascicularis} SCOP: a.45.1.1 c.47.1.5 PDB:
2pbj_A*
Length = 290
Score = 29.5 bits (65), Expect = 3.0
Identities = 39/302 (12%), Positives = 88/302 (29%), Gaps = 66/302 (21%)
Query: 115 IHGYDMTPFIHRYSRYINEKSLSYRTVAFDFCKVKRGKEDGLLRTMPANKLLKSLPVLQS 174
++ Y PF + +++ +L Y+ V + K + +P+L +
Sbjct: 17 LYQYKTCPFCSKVRAFLDFHALPYQVVEVNPVLRAEIKFSS----------YRKVPILVA 66
Query: 175 Q--------------IDALLEFDCNNSDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLL 220
Q I AL + + L + M D +
Sbjct: 67 QEGESSQQLNDSSVIISALKTYLVSGQPLEEIITYYPAMKAVND-------QGKEVTEFG 119
Query: 221 EKYFDMNKKQCKEALDLYKKFLIRMDRVAEFLKVAENVGIDKGDIPDLTKAPSSLLEALE 280
KY+ M ++ + + K+ + + + A++ + P++ + P+ L + +
Sbjct: 120 NKYWLMLNEKEAQQVYSGKEARTEEMK---WRQWADDW-LVHLISPNVYRTPTEALASFD 175
Query: 281 QHLATLEGKKSAAGTPTQASHRNDVKSGVNSFSTTSSAFSAVSGADLEESLKKQALAEEE 340
F A + GA + K L
Sbjct: 176 Y------------------------IVREGKFGAVEGAVAKYMGAAAMYLISK-RLKSRH 210
Query: 341 AILNQYKAKVSSPTSSMPSNAASTNPFLASPTQPIVDL--FGSAPASVEPVQTSKPSDDL 398
+ + + + + PF+ + DL +G + ++ DDL
Sbjct: 211 RLQDNVREDLYEAADKWVAAVGKDRPFMGGQKPNLADLAVYG----VLRVMEGLDAFDDL 266
Query: 399 LQ 400
+Q
Sbjct: 267 MQ 268
>2kwp_A Transcription elongation protein NUSA; NMR {Escherichia coli}
Length = 129
Score = 28.2 bits (64), Expect = 3.1
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 250 EFLKVAENVGIDKGDIPDLTKAPSSLLEALEQHLAT 285
E L V E V +K +P + EALE LAT
Sbjct: 4 EILAVVEAVSNEKA-LP-----REKIFEALESALAT 33
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase;
3.00A {Giardia intestinalis} PDB: 2ffl_A
Length = 756
Score = 29.5 bits (66), Expect = 3.4
Identities = 35/152 (23%), Positives = 60/152 (39%), Gaps = 17/152 (11%)
Query: 269 TKAPSSLLEALEQHLATLEGKKSAAGTPTQASHRNDVKSGVNSFSTTSSAFSAVSGADLE 328
T+ PS L L+ HL TL G K +AG A+ S S T + AV + L
Sbjct: 15 TRGPSHWLLLLDTHLGTLPGFKVSAGRGLPAAEVYFEAGPRVSLSRTDATIVAVYQSILF 74
Query: 329 ESLKKQALAEEEAILNQYKAKVSSPTSSMPSNAASTNPFLASPTQPIVDLFGSAPASVEP 388
+ L + A + ++MP N + F+++P Q F + P
Sbjct: 75 QLLGPT-----------FPASWTEIGATMPHNEYTFPRFISNPPQFATLAFLPLLSPTSP 123
Query: 389 V--QTSKPSDDLL----QLGNPFVDDFTGAAA 414
+ + + L+ +L + + D T +A+
Sbjct: 124 LDLRALMVTAQLMCDAKRLSDEYTDYSTLSAS 155
>1nfg_A D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2.70A {Ralstonia
pickettii} SCOP: b.92.1.3 c.1.9.6
Length = 457
Score = 29.4 bits (67), Expect = 3.6
Identities = 16/102 (15%), Positives = 27/102 (26%), Gaps = 20/102 (19%)
Query: 268 LTKAPSSLLEALEQHLATLEGKKS------AAGTPTQASHRND----VKSGVNSFS--TT 315
SL EA+ + GK + S + G+ SF
Sbjct: 93 QQDRGHSLAEAVAKWDGMAGGKSAIDYGYHIIVLDPTDSVIEELEVLPDLGITSFKVFMA 152
Query: 316 SSAFSAVSGADLEESLKKQAL--------AEEEAILNQYKAK 349
+ + L ++L K AE + + K
Sbjct: 153 YRGMNMIDDVTLLKTLDKAVKTGSLVMVHAENGDAADYLRDK 194
>3mxa_A SCV3V2(G19S); protein-DNA complex, hydrolase-DNA complex; HET: DNA
1PE; 2.30A {Chlamydomonas reinhardtii} PDB: 3mx9_A*
Length = 362
Score = 28.7 bits (63), Expect = 5.3
Identities = 8/43 (18%), Positives = 19/43 (44%)
Query: 216 IINLLEKYFDMNKKQCKEALDLYKKFLIRMDRVAEFLKVAENV 258
+ L+ + + +KQ L + ++ + +FL+V V
Sbjct: 88 FLTQLQPFLKLKQKQANLVLKIIEQLPSAKESPDKFLEVCTWV 130
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 28.3 bits (62), Expect = 6.7
Identities = 7/79 (8%), Positives = 13/79 (16%)
Query: 455 LDPSKTMPPPSTVPGALGANYRPMGQSMTPFYTDNAFPAQPVGAPRMPMMPSSGGTPLMG 514
L K VP + + + G
Sbjct: 205 LPILKMSTITGPVPREFKSQLQEAPLEWKALLEMQQTKMVLETFGGDGHARGDSVSQGTG 264
Query: 515 SPRQVPSGQPPVASTQLDP 533
P + ++P
Sbjct: 265 LAPGSPRKPGTSSIGNVNP 283
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural
genomics, protein structure initiative; 2.40A
{Methanosarcina mazei GO1}
Length = 478
Score = 28.4 bits (64), Expect = 6.8
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 6/38 (15%)
Query: 226 MNKKQCKEALDLYKKFL-----IRMD-RVAEFLKVAEN 257
+++ K A++LY L I M AE K AEN
Sbjct: 202 IDEASTKRAVELYSPVLTVGQVIPMSATAAEVTKTAEN 239
>1gkp_A Hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET:
KCX EPE; 1.29A {Thermus SP} SCOP: b.92.1.3 c.1.9.6 PDB:
1gkq_A*
Length = 458
Score = 28.3 bits (64), Expect = 7.8
Identities = 14/102 (13%), Positives = 30/102 (29%), Gaps = 20/102 (19%)
Query: 268 LTKAPSSLLEALEQHLATLEGKKS------AAGTPTQASHRND----VKSGVNSFS--TT 315
LE + + EG A + V G++SF +
Sbjct: 94 CPSRNDDALEGYQLWKSKAEGNSYCDYTFHMAVSKFDEKTEGQLREIVADGISSFKIFLS 153
Query: 316 SSAFSAVSGADLEESLKK----QAL----AEEEAILNQYKAK 349
F V ++ ++L+ + E ++ + + K
Sbjct: 154 YKNFFGVDDGEMYQTLRLAKELGVIVTAHCENAELVGRLQQK 195
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 28.1 bits (63), Expect = 9.5
Identities = 19/119 (15%), Positives = 34/119 (28%), Gaps = 4/119 (3%)
Query: 162 ANKLLKSLPVLQSQIDALLEFDCNNSDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLE 221
+++L S L S +S + + A+ LL D ++ D +
Sbjct: 157 GSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALL-SDALQRLYSATDEGYLVAN 215
Query: 222 KYFDMNKKQCKEALDLYKKFLIRMDRVAEFLKVAENVGIDKGDIPDLTKAPSSLLEALE 280
+ L + A L GI +L A L E++
Sbjct: 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALC---YTGIFHFLKNNLLDAQVLLQESIN 271
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.376
Gapped
Lambda K H
0.267 0.0464 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,976,550
Number of extensions: 478707
Number of successful extensions: 961
Number of sequences better than 10.0: 1
Number of HSP's gapped: 934
Number of HSP's successfully gapped: 45
Length of query: 537
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 439
Effective length of database: 3,965,535
Effective search space: 1740869865
Effective search space used: 1740869865
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.5 bits)