RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16398
(537 letters)
>d1hx8a1 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 133
Score = 182 bits (463), Expect = 4e-56
Identities = 110/133 (82%), Positives = 122/133 (91%)
Query: 154 DGLLRTMPANKLLKSLPVLQSQIDALLEFDCNNSDLRNGVINGAFMLLFRDLIRLFAGYN 213
+G LR+M A KLLK+LPVLQ+Q+DALLEFDC ++DL NGVIN +FMLLFRDLIRLFA YN
Sbjct: 1 EGSLRSMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYN 60
Query: 214 DSIINLLEKYFDMNKKQCKEALDLYKKFLIRMDRVAEFLKVAENVGIDKGDIPDLTKAPS 273
D IINLLEKYFDMNKK ++ALDLYKKFL+RMDRV EFLKVAENVGIDKGDIPDLTKAPS
Sbjct: 61 DGIINLLEKYFDMNKKHARDALDLYKKFLVRMDRVGEFLKVAENVGIDKGDIPDLTKAPS 120
Query: 274 SLLEALEQHLATL 286
SLL+ALEQHLATL
Sbjct: 121 SLLDALEQHLATL 133
>d1hf8a1 a.7.8.2 (A:150-281) Clathrin assembly lymphoid myeloid
leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 132
Score = 178 bits (454), Expect = 1e-54
Identities = 93/133 (69%), Positives = 116/133 (87%), Gaps = 1/133 (0%)
Query: 150 RGKEDGLLRTMPANKLLKSLPVLQSQIDALLEFDCNNSDLRNGVINGAFMLLFRDLIRLF 209
RG + G++RTM KLLK++P++Q+Q+DALL+F+ N+++L NGVIN AFMLLF+D IRLF
Sbjct: 1 RGAD-GVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLF 59
Query: 210 AGYNDSIINLLEKYFDMNKKQCKEALDLYKKFLIRMDRVAEFLKVAENVGIDKGDIPDLT 269
A YN+ IINLLEKYFDM K QCKE LD+YKKFL RM R++EFLKVAE VGID+GDIPDL+
Sbjct: 60 AAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDRGDIPDLS 119
Query: 270 KAPSSLLEALEQH 282
+APSSLL+ALEQH
Sbjct: 120 QAPSSLLDALEQH 132
>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 140
Score = 156 bits (395), Expect = 3e-46
Identities = 96/140 (68%), Positives = 111/140 (79%), Gaps = 11/140 (7%)
Query: 20 QGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNSSSVVVFKAL 79
QGLAK+VCKATTEE IGPKKKHLDYL+HC NE NVSIP LA LLIER+QN++ VVV+K+L
Sbjct: 1 QGLAKSVCKATTEECIGPKKKHLDYLVHCANEPNVSIPHLANLLIERSQNANWVVVYKSL 60
Query: 80 ITIHHLMCYGNERFTQYLASSNCSLQLGNFLDKSGIH-----------GYDMTPFIHRYS 128
IT HHLM YGNERF QYLASSN + L +FLDK + GYDM+PFI RY+
Sbjct: 61 ITTHHLMAYGNERFMQYLASSNSTFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRRYA 120
Query: 129 RYINEKSLSYRTVAFDFCKV 148
+Y+NEKSLSYR +AFDFCKV
Sbjct: 121 KYLNEKSLSYRAMAFDFCKV 140
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid
leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 131
Score = 146 bits (371), Expect = 7e-43
Identities = 93/131 (70%), Positives = 105/131 (80%)
Query: 19 GQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNSSSVVVFKA 78
G ++K VCKATT E++GPKKKHLDYL+ CTNE NV+IP LA L ERT NSS VVVFK+
Sbjct: 1 GSAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNSSWVVVFKS 60
Query: 79 LITIHHLMCYGNERFTQYLASSNCSLQLGNFLDKSGIHGYDMTPFIHRYSRYINEKSLSY 138
LIT HHLM YGNERF QYLAS N L NFLDKSG+ GYDM+ FI RYSRY+NEK++SY
Sbjct: 61 LITTHHLMVYGNERFIQYLASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSY 120
Query: 139 RTVAFDFCKVK 149
R VAFDF KVK
Sbjct: 121 RQVAFDFTKVK 131
>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 144
Score = 81.5 bits (201), Expect = 4e-19
Identities = 18/112 (16%), Positives = 45/112 (40%), Gaps = 3/112 (2%)
Query: 22 LAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNSSS--VVVFKAL 79
V +AT+ + GP + + T + ++ +++ +R + V+KA+
Sbjct: 6 AEIKVREATSNDPWGPSSSLMSEIADLTYNVV-AFSEIMSMIWKRLNDHGKNWRHVYKAM 64
Query: 80 ITIHHLMCYGNERFTQYLASSNCSLQLGNFLDKSGIHGYDMTPFIHRYSRYI 131
+ +L+ G+ER +Q + ++Q G D + ++ +
Sbjct: 65 TLMEYLIKTGSERVSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQL 116
>d1gt1a_ b.60.1.1 (A:) Odorant-binding protein {Cow (Bos taurus)
[TaxId: 9913]}
Length = 158
Score = 30.1 bits (67), Expect = 0.36
Identities = 9/59 (15%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 212 YNDSIINLLEKYFDMNKKQCKEALDLYKKFLIRMDRVAEFLKVAENVGIDKGDIPDLTK 270
+ + + + E + K + + + +F K+ E+ GIDK ++ + +
Sbjct: 95 RTHLVAHNINVDKHGQTTELTEL---FVKLNVEDEDLEKFWKLTEDKGIDKKNVVNFLE 150
>d1ojha_ a.214.1.1 (A:) Phycobilisome degradation protein NblA
{Anabaena sp. PCC 7120 [TaxId: 103690]}
Length = 52
Score = 27.9 bits (62), Expect = 0.38
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 226 MNKKQCKEAL-DLYKKFLIRMDRVAEFLK 253
M+ Q K+ L LY++ ++R E LK
Sbjct: 21 MSHDQAKDFLVKLYEQMVVREATYQELLK 49
>d1fqta_ b.33.1.1 (A:) Rieske-type ferredoxin associated with
biphenyl dioxygenase {Burkholderia cepacia [TaxId: 292]}
Length = 109
Score = 29.3 bits (65), Expect = 0.43
Identities = 10/63 (15%), Positives = 17/63 (26%), Gaps = 1/63 (1%)
Query: 109 FLDKSGIHGYDMTPFIHRYSRYINEKSLSYRTVAFDFCKVKRGKEDGLLRTMPANKLLKS 168
F + H + L V K G +++ P + LK
Sbjct: 30 FNVDGELFATQDRCT-HGDWSLSDGGYLEGDVVECSLHMGKFCVRTGKVKSPPPCEALKI 88
Query: 169 LPV 171
P+
Sbjct: 89 FPI 91
>d1fcqa_ c.1.8.9 (A:) Bee venom hyaluronidase {Honeybee (Apis
mellifera) [TaxId: 7460]}
Length = 321
Score = 30.2 bits (68), Expect = 0.58
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 478 MGQSMTPFYTDNAFPAQPVGAPRMPMMPSSGGTPLMGS 515
G+ + Y FPA + P ++ +GG P +G+
Sbjct: 38 RGEEIAILYDPGMFPA-LLKDPNGNVVARNGGVPQLGN 74
>d1g9la_ a.144.1.1 (A:) poly(A) binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 144
Score = 28.8 bits (64), Expect = 0.90
Identities = 8/40 (20%), Positives = 15/40 (37%)
Query: 491 FPAQPVGAPRMPMMPSSGGTPLMGSPRQVPSGQPPVASTQ 530
+ P + +P + +P+Q + QP V Q
Sbjct: 3 LGSAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQ 42
>d1oqva_ d.24.1.2 (A:) Toxin-coregulated pilus subunit TcpA {Vibrio
cholerae [TaxId: 666]}
Length = 171
Score = 28.3 bits (63), Expect = 1.5
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 8/54 (14%)
Query: 380 GSAPASVEPVQTSKPSDDLLQLG--------NPFVDDFTGAAAPGSQPPVNNAW 425
G+ PA+ + SK + L+ LG NPF+ + N A+
Sbjct: 27 GNYPATADATAASKLTSGLVSLGKISSDEAKNPFIGTNMNIFSFPRNAAANKAF 80
>d1hula_ a.26.1.2 (A:) Interleukin-5 {Human (Homo sapiens) [TaxId:
9606]}
Length = 108
Score = 27.5 bits (61), Expect = 1.8
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 217 INLLEKYFDMNKKQCKEALDLYKKFLIRMDRVAEFLKV 254
++L++KY D KK+C E +FL D + EFL V
Sbjct: 68 LSLIKKYIDGQKKKCGEERRRVNQFL---DYLQEFLGV 102
>d1rq6a_ a.4.15.1 (A:) ribosomal protein S17e {Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 62
Score = 25.7 bits (57), Expect = 2.6
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 7/29 (24%)
Query: 219 LLEKY-------FDMNKKQCKEALDLYKK 240
++E + FD NKK +E + K
Sbjct: 16 MIETHPGKFTDDFDTNKKLVEEFSTVSTK 44
>d1jfxa_ c.1.8.8 (A:) Streptomyces lysozyme {Streptomyces
coelicolor, "mueller" dsm3030 [TaxId: 1902]}
Length = 217
Score = 27.4 bits (60), Expect = 3.6
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 111 DKSGIHGYDMTPFIHRYSRYINEKSLSYRTVAFDFCKVKRG 151
D SG+ G D + + IN S+ ++F + K G
Sbjct: 1 DTSGVQGID----VSHWQGSINWSSVKSAGMSFAYIKATEG 37
>d1dzka_ b.60.1.1 (A:) Odorant-binding protein {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 148
Score = 26.9 bits (59), Expect = 4.3
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 212 YNDSIINLLEKYFDMNKKQCKEALDLYKKFLIRMDRVAEFLKVAENVGIDKGDIPDLTK 270
II+ + D + L K I + +F +V GI + +I ++ +
Sbjct: 86 ETALIISNI--NVDEEGDKTIMTGLLGKGTDIEDQDLEKFKEVTRENGIPEENIVNIIE 142
>d1tkla_ d.248.1.1 (A:) Coproporphyrinogen III oxidase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 27.4 bits (60), Expect = 4.6
Identities = 13/74 (17%), Positives = 19/74 (25%), Gaps = 9/74 (12%)
Query: 306 KSGVNSFSTTSSAFSAVSGADLEESLKKQALAEEEAILNQYKAKVSSPTSSMPSNAASTN 365
K GVN S V G + A+ + + K P + A
Sbjct: 63 KGGVN--------VSVVYGQLSPAA-VSAMKADHKNLRLPEDPKTGLPVTDGVKFFACGL 113
Query: 366 PFLASPTQPIVDLF 379
+ P P
Sbjct: 114 SMVIHPVNPHAPTT 127
>d1e5pa_ b.60.1.1 (A:) Aphrodisin, a sex pheromone {Golden hamster
(Mesocricetus auratus) [TaxId: 10036]}
Length = 149
Score = 26.2 bits (57), Expect = 6.3
Identities = 5/59 (8%), Positives = 16/59 (27%), Gaps = 2/59 (3%)
Query: 212 YNDSIINLLEKYFDMNKKQCKEALDLYKKFLIRMDRVAEFLKVAENVGIDKGDIPDLTK 270
+ D ++ + K + + ++ A I +I ++
Sbjct: 87 SDKIFFTNKNM--DRAGQETNMIVVAGKGNALTPEENEILVQFAHEKKIPVENILNILA 143
>d1bj7a_ b.60.1.1 (A:) Lipocalin allergen {Cow (Bos taurus), bos d 2
[TaxId: 9913]}
Length = 150
Score = 26.3 bits (57), Expect = 6.3
Identities = 4/28 (14%), Positives = 13/28 (46%)
Query: 243 IRMDRVAEFLKVAENVGIDKGDIPDLTK 270
+ + ++ ++ G+ +I +L K
Sbjct: 117 FTPEELEKYQQLNSERGVPNENIENLIK 144
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.131 0.376
Gapped
Lambda K H
0.267 0.0567 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,897,395
Number of extensions: 86971
Number of successful extensions: 249
Number of sequences better than 10.0: 1
Number of HSP's gapped: 247
Number of HSP's successfully gapped: 22
Length of query: 537
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 447
Effective length of database: 1,171,896
Effective search space: 523837512
Effective search space used: 523837512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.3 bits)