Query psy16399
Match_columns 165
No_of_seqs 235 out of 2033
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 20:18:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16399.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16399hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00269 conserved hypothetic 99.9 2.3E-25 5.1E-30 159.9 8.3 91 17-107 1-101 (104)
2 PRK10696 tRNA 2-thiocytidine b 99.5 2.3E-14 5E-19 117.4 7.3 59 107-165 10-68 (258)
3 COG0037 MesJ tRNA(Ile)-lysidin 99.3 2.1E-12 4.5E-17 106.7 6.4 56 104-165 1-56 (298)
4 PRK10696 tRNA 2-thiocytidine b 99.3 4.7E-12 1E-16 103.7 8.1 83 4-86 158-242 (258)
5 KOG2840|consensus 99.0 1.9E-10 4.2E-15 96.4 3.0 108 3-110 191-310 (347)
6 COG0037 MesJ tRNA(Ile)-lysidin 98.9 3.3E-09 7.2E-14 87.6 8.1 92 16-107 162-266 (298)
7 KOG2840|consensus 98.9 1.5E-09 3.3E-14 91.1 4.2 76 90-165 15-90 (347)
8 PRK00074 guaA GMP synthase; Re 98.7 1.4E-08 3E-13 90.8 5.8 62 99-165 188-249 (511)
9 TIGR03573 WbuX N-acetyl sugar 98.7 5.3E-08 1.2E-12 83.0 6.8 65 96-165 19-93 (343)
10 PRK00919 GMP synthase subunit 98.6 3.5E-08 7.7E-13 83.1 5.0 36 125-165 20-55 (307)
11 PLN02347 GMP synthetase 98.6 6.4E-08 1.4E-12 87.1 5.4 62 99-165 201-263 (536)
12 PRK08576 hypothetical protein; 98.5 1.3E-07 2.9E-12 83.1 5.5 54 102-165 214-267 (438)
13 PRK10660 tilS tRNA(Ile)-lysidi 98.5 4E-07 8.8E-12 80.0 7.9 70 15-84 150-220 (436)
14 PRK05253 sulfate adenylyltrans 98.5 2.1E-07 4.6E-12 78.2 5.1 54 108-165 11-64 (301)
15 PF01171 ATP_bind_3: PP-loop f 98.5 1.5E-07 3.2E-12 73.0 3.8 45 16-60 137-181 (182)
16 TIGR02432 lysidine_TilS_N tRNA 98.4 6E-07 1.3E-11 69.6 6.5 47 16-62 141-187 (189)
17 PRK02090 phosphoadenosine phos 98.4 3E-07 6.6E-12 74.7 4.9 45 110-165 29-73 (241)
18 COG3969 Predicted phosphoadeno 98.3 1.6E-06 3.4E-11 73.7 6.9 41 124-165 25-65 (407)
19 PRK08349 hypothetical protein; 98.3 1.4E-06 2.9E-11 68.7 5.6 55 16-70 134-197 (198)
20 TIGR02039 CysD sulfate adenyly 98.3 1.3E-06 2.7E-11 73.3 4.9 36 128-165 21-56 (294)
21 TIGR00552 nadE NAD+ synthetase 98.2 1.6E-06 3.4E-11 70.7 5.2 36 125-165 21-56 (250)
22 COG0519 GuaA GMP synthase, PP- 98.2 2.2E-06 4.7E-11 71.1 5.7 51 110-165 5-55 (315)
23 KOG1622|consensus 98.2 1.6E-06 3.5E-11 75.8 5.0 63 99-165 203-265 (552)
24 TIGR00342 thiazole biosynthesi 98.2 2.3E-06 4.9E-11 73.8 5.0 36 124-165 170-205 (371)
25 PRK13980 NAD synthetase; Provi 98.2 3.8E-06 8.3E-11 69.1 5.9 49 109-165 17-65 (265)
26 cd00553 NAD_synthase NAD+ synt 98.1 3.9E-06 8.5E-11 68.3 5.0 51 111-165 8-58 (248)
27 cd01992 PP-ATPase N-terminal d 98.0 1.3E-05 2.8E-10 61.6 6.1 48 14-61 135-182 (185)
28 TIGR00884 guaA_Cterm GMP synth 98.0 5.8E-06 1.3E-10 69.9 4.4 24 126-149 16-39 (311)
29 PRK13795 hypothetical protein; 98.0 9.3E-06 2E-10 74.6 5.0 50 109-165 227-276 (636)
30 KOG2594|consensus 98.0 1.3E-05 2.7E-10 68.4 5.3 51 97-147 31-83 (396)
31 PRK13794 hypothetical protein; 98.0 1E-05 2.2E-10 72.0 5.1 36 125-165 246-281 (479)
32 PRK12563 sulfate adenylyltrans 98.0 1.2E-05 2.6E-10 67.9 5.1 54 108-165 21-74 (312)
33 PRK08384 thiamine biosynthesis 98.0 9.3E-06 2E-10 70.4 4.5 34 126-165 180-213 (381)
34 PRK08557 hypothetical protein; 97.9 1.6E-05 3.5E-10 69.7 5.7 34 126-165 181-214 (417)
35 cd01986 Alpha_ANH_like Adenine 97.9 5.9E-06 1.3E-10 58.3 2.2 22 129-150 1-22 (103)
36 cd01984 AANH_like Adenine nucl 97.9 1.5E-05 3.3E-10 54.1 3.9 34 129-165 1-34 (86)
37 COG1606 ATP-utilizing enzymes 97.9 1.8E-05 4E-10 64.9 4.5 26 123-148 14-39 (269)
38 PRK00143 mnmA tRNA-specific 2- 97.8 1.5E-05 3.3E-10 68.1 4.0 62 15-76 155-217 (346)
39 PRK01565 thiamine biosynthesis 97.8 1.9E-05 4.2E-10 68.5 4.7 34 125-164 175-208 (394)
40 PRK01269 tRNA s(4)U8 sulfurtra 97.8 2.4E-05 5.1E-10 69.7 4.7 34 126-165 177-210 (482)
41 PRK01269 tRNA s(4)U8 sulfurtra 97.8 4E-05 8.6E-10 68.2 5.8 66 16-81 309-376 (482)
42 PF10288 DUF2392: Protein of u 97.7 8E-05 1.7E-09 53.4 5.8 68 15-82 30-106 (107)
43 TIGR02057 PAPS_reductase phosp 97.7 5E-05 1.1E-09 61.4 4.9 35 126-165 25-59 (226)
44 PRK02628 nadE NAD synthetase; 97.6 9.9E-05 2.1E-09 68.3 5.7 53 111-164 347-400 (679)
45 PRK06850 hypothetical protein; 97.4 0.00028 6E-09 63.3 6.0 41 125-165 33-76 (507)
46 PRK00876 nadE NAD synthetase; 97.3 0.00047 1E-08 58.7 5.9 50 108-164 18-67 (326)
47 PF02540 NAD_synthase: NAD syn 97.3 0.00024 5.2E-09 58.0 3.5 36 110-149 6-41 (242)
48 PTZ00323 NAD+ synthase; Provis 97.2 0.00036 7.9E-09 58.6 4.2 37 109-149 33-69 (294)
49 COG0175 CysH 3'-phosphoadenosi 97.1 0.00048 1E-08 56.8 3.8 33 127-165 40-72 (261)
50 PF00733 Asn_synthase: Asparag 97.1 0.00067 1.4E-08 53.8 4.5 38 109-148 2-39 (255)
51 PRK13981 NAD synthetase; Provi 96.8 0.0019 4.2E-08 58.1 5.4 51 109-164 263-314 (540)
52 TIGR01536 asn_synth_AEB aspara 96.8 0.0026 5.5E-08 56.2 5.9 40 108-149 237-276 (467)
53 PRK00768 nadE NAD synthetase; 96.3 0.0043 9.3E-08 51.5 3.9 25 125-149 37-61 (268)
54 cd01990 Alpha_ANH_like_I This 95.9 0.0062 1.3E-07 47.6 2.6 50 17-66 121-176 (202)
55 COG1365 Predicted ATPase (PP-l 95.8 0.0091 2E-07 48.2 3.3 24 126-149 60-83 (255)
56 COG0171 NadE NAD synthase [Coe 95.7 0.012 2.5E-07 49.0 3.7 25 125-149 24-48 (268)
57 PLN02549 asparagine synthase ( 95.6 0.025 5.5E-07 51.7 5.8 40 108-149 209-248 (578)
58 PRK00074 guaA GMP synthase; Re 95.3 0.014 2.9E-07 52.6 2.9 41 16-56 355-398 (511)
59 PRK09431 asnB asparagine synth 95.1 0.033 7.1E-07 50.7 4.8 41 108-150 211-251 (554)
60 TIGR00420 trmU tRNA (5-methyla 95.1 0.016 3.5E-07 49.8 2.6 60 15-76 159-221 (352)
61 TIGR03104 trio_amidotrans aspa 95.0 0.045 9.9E-07 50.0 5.6 39 109-149 245-283 (589)
62 PTZ00077 asparagine synthetase 94.9 0.039 8.4E-07 50.5 4.8 41 108-150 221-261 (586)
63 KOG0573|consensus 94.9 0.044 9.4E-07 48.6 4.7 25 126-150 250-274 (520)
64 PRK08576 hypothetical protein; 94.8 0.025 5.3E-07 50.1 3.1 37 16-52 361-408 (438)
65 TIGR03108 eps_aminotran_1 exos 94.8 0.05 1.1E-06 49.9 5.2 39 109-149 243-281 (628)
66 cd01997 GMP_synthase_C The C-t 94.5 0.035 7.6E-07 46.7 3.3 41 16-56 140-183 (295)
67 KOG2594|consensus 94.1 0.07 1.5E-06 46.0 4.3 82 4-85 219-314 (396)
68 cd01712 ThiI ThiI is required 93.3 0.085 1.9E-06 40.4 3.1 31 15-45 131-161 (177)
69 TIGR00552 nadE NAD+ synthetase 93.3 0.08 1.7E-06 43.1 3.1 36 15-50 150-186 (250)
70 COG0367 AsnB Asparagine syntha 93.0 0.15 3.3E-06 46.3 4.8 40 109-150 215-254 (542)
71 cd01995 ExsB ExsB is a transcr 92.9 0.097 2.1E-06 39.6 2.9 36 14-49 112-148 (169)
72 TIGR00424 APS_reduc 5'-adenyly 92.4 0.2 4.3E-06 44.8 4.6 33 126-165 115-147 (463)
73 PLN02309 5'-adenylylsulfate re 91.9 0.27 5.8E-06 43.9 4.7 33 126-165 110-142 (457)
74 cd01999 Argininosuccinate_Synt 91.8 0.18 3.8E-06 44.0 3.4 36 17-52 135-174 (385)
75 cd01998 tRNA_Me_trans tRNA met 91.5 0.16 3.4E-06 43.6 2.8 56 16-75 157-217 (349)
76 PLN02339 NAD+ synthase (glutam 91.3 0.21 4.5E-06 46.8 3.6 22 125-146 347-368 (700)
77 PRK00919 GMP synthase subunit 90.8 0.2 4.2E-06 42.5 2.7 41 16-56 153-196 (307)
78 COG0301 ThiI Thiamine biosynth 90.8 0.4 8.6E-06 41.9 4.6 34 126-165 175-208 (383)
79 TIGR00884 guaA_Cterm GMP synth 90.2 0.3 6.6E-06 41.3 3.3 35 16-50 155-190 (311)
80 PRK14665 mnmA tRNA-specific 2- 89.8 0.37 8E-06 41.6 3.6 28 16-43 156-183 (360)
81 PRK05253 sulfate adenylyltrans 89.5 0.34 7.4E-06 40.9 3.1 28 15-42 178-205 (301)
82 cd05565 PTS_IIB_lactose PTS_II 88.8 1.1 2.3E-05 31.8 4.7 35 128-162 2-36 (99)
83 PRK02090 phosphoadenosine phos 88.8 0.43 9.4E-06 38.6 3.1 36 8-43 160-195 (241)
84 PRK08384 thiamine biosynthesis 88.1 0.93 2E-05 39.5 4.9 27 16-42 313-340 (381)
85 TIGR00268 conserved hypothetic 88.0 1.2 2.5E-05 36.3 5.2 33 18-50 134-171 (252)
86 PRK14561 hypothetical protein; 85.7 1.7 3.7E-05 34.1 4.8 49 16-64 124-172 (194)
87 TIGR02039 CysD sulfate adenyly 85.1 0.87 1.9E-05 38.4 3.1 29 14-42 169-197 (294)
88 TIGR00032 argG argininosuccina 84.5 1.2 2.6E-05 39.0 3.8 37 16-52 134-173 (394)
89 cd00553 NAD_synthase NAD+ synt 84.5 0.91 2E-05 36.8 2.8 36 16-51 153-189 (248)
90 COG0794 GutQ Predicted sugar p 84.1 2.9 6.2E-05 33.5 5.4 40 121-164 82-121 (202)
91 PRK10490 sensor protein KdpD; 83.0 5.1 0.00011 38.5 7.6 41 123-165 247-287 (895)
92 PRK10499 PTS system N,N'-diace 80.9 5.5 0.00012 28.3 5.4 36 127-162 4-39 (106)
93 TIGR00364 exsB protein. This p 79.1 2 4.3E-05 33.5 2.9 34 16-49 149-186 (201)
94 PTZ00285 glucosamine-6-phospha 77.5 7.7 0.00017 31.5 6.0 55 110-165 17-72 (253)
95 TIGR00853 pts-lac PTS system, 76.4 6.4 0.00014 27.3 4.6 35 127-161 4-38 (95)
96 COG2205 KdpD Osmosensitive K+ 76.3 11 0.00023 36.3 7.1 55 109-165 224-285 (890)
97 KOG2303|consensus 76.2 3.5 7.5E-05 37.5 3.8 39 100-149 334-372 (706)
98 PF01182 Glucosamine_iso: Gluc 75.9 6.5 0.00014 30.8 5.0 41 124-165 18-59 (199)
99 KOG3425|consensus 75.0 16 0.00034 27.1 6.3 53 108-165 10-72 (128)
100 PRK09590 celB cellobiose phosp 74.8 7.1 0.00015 27.8 4.5 33 128-160 3-35 (104)
101 cd01400 6PGL 6PGL: 6-Phosphogl 74.4 7.9 0.00017 30.8 5.2 49 112-165 10-59 (219)
102 cd05564 PTS_IIB_chitobiose_lic 73.9 6.1 0.00013 27.4 3.9 35 128-162 1-35 (96)
103 PF02302 PTS_IIB: PTS system, 72.1 11 0.00024 25.0 4.9 34 128-163 1-35 (90)
104 PRK01565 thiamine biosynthesis 71.9 5.7 0.00012 34.6 4.1 26 16-41 308-333 (394)
105 TIGR00502 nagB glucosamine-6-p 71.6 16 0.00034 29.8 6.5 54 111-165 18-72 (259)
106 PLN02360 probable 6-phosphoglu 71.0 11 0.00024 31.0 5.5 42 123-165 38-80 (268)
107 PF02568 ThiI: Thiamine biosyn 69.8 5.9 0.00013 31.4 3.4 35 16-50 137-175 (197)
108 KOG0571|consensus 69.2 12 0.00026 33.6 5.4 39 109-149 210-248 (543)
109 PRK12563 sulfate adenylyltrans 68.3 5 0.00011 34.1 2.9 28 15-42 188-215 (312)
110 TIGR00342 thiazole biosynthesi 68.2 3.4 7.4E-05 35.7 1.9 25 16-40 304-328 (371)
111 cd01976 Nitrogenase_MoFe_alpha 65.7 48 0.001 29.1 8.6 45 111-162 285-329 (421)
112 PRK06696 uridine kinase; Valid 63.6 22 0.00047 28.0 5.6 39 125-165 19-59 (223)
113 PRK14664 tRNA-specific 2-thiou 63.0 5.5 0.00012 34.5 2.2 27 16-42 151-177 (362)
114 PRK09762 galactosamine-6-phosp 61.4 23 0.00049 28.5 5.4 40 126-165 27-67 (232)
115 PRK02122 glucosamine-6-phospha 61.2 21 0.00045 33.4 5.8 55 109-165 43-98 (652)
116 PRK05439 pantothenate kinase; 60.6 19 0.00041 30.6 5.0 42 124-165 82-125 (311)
117 cd08330 CARD_ASC_NALP1 Caspase 60.2 13 0.00027 25.2 3.2 35 50-84 40-74 (82)
118 TIGR01282 nifD nitrogenase mol 59.3 86 0.0019 28.0 9.1 44 112-162 321-364 (466)
119 KOG0081|consensus 59.1 41 0.00089 26.4 6.1 27 24-50 140-167 (219)
120 cd00458 SugarP_isomerase Sugar 58.9 34 0.00073 26.0 5.8 39 125-165 18-57 (169)
121 PRK13982 bifunctional SbtC-lik 58.0 17 0.00037 32.8 4.4 36 125-163 69-104 (475)
122 COG0236 AcpP Acyl carrier prot 57.9 9.6 0.00021 25.3 2.3 23 134-158 34-56 (80)
123 TIGR01198 pgl 6-phosphoglucono 57.1 32 0.0007 27.6 5.6 37 125-165 26-63 (233)
124 PF00550 PP-binding: Phosphopa 56.9 7.6 0.00017 24.2 1.6 29 123-154 18-46 (67)
125 PRK05087 D-alanine--poly(phosp 56.6 11 0.00025 25.2 2.5 49 109-159 3-54 (78)
126 cd01399 GlcN6P_deaminase GlcN6 56.4 30 0.00065 27.1 5.3 42 124-165 16-58 (232)
127 PRK12358 putative 6-phosphoglu 55.3 29 0.00063 27.9 5.1 39 126-165 27-66 (239)
128 PRK08557 hypothetical protein; 54.7 33 0.00071 30.4 5.6 59 18-83 314-383 (417)
129 PRK10886 DnaA initiator-associ 51.8 66 0.0014 25.3 6.5 48 110-163 96-143 (196)
130 PRK07639 acyl carrier protein; 51.7 15 0.00032 25.0 2.4 47 109-159 6-58 (86)
131 cd08327 CARD_RAIDD Caspase act 51.4 25 0.00054 24.6 3.6 52 31-82 26-78 (94)
132 PRK00982 acpP acyl carrier pro 50.8 14 0.00031 24.0 2.2 20 134-153 32-51 (78)
133 PF13580 SIS_2: SIS domain; PD 50.5 55 0.0012 23.8 5.5 37 123-163 101-137 (138)
134 PRK02842 light-independent pro 49.9 1.1E+02 0.0024 26.8 8.2 32 30-61 224-255 (427)
135 PRK00443 nagB glucosamine-6-ph 49.8 61 0.0013 26.0 6.2 41 125-165 31-72 (261)
136 CHL00124 acpP acyl carrier pro 48.7 16 0.00035 24.1 2.2 19 135-153 35-53 (82)
137 TIGR02055 APS_reductase thiore 48.4 18 0.0004 28.1 2.8 27 17-43 123-149 (191)
138 cd08819 CARD_MDA5_2 Caspase ac 48.3 27 0.00059 24.2 3.3 33 51-84 48-80 (88)
139 COG1440 CelA Phosphotransferas 48.2 56 0.0012 23.3 4.9 36 127-162 2-37 (102)
140 KOG0098|consensus 47.9 23 0.00049 28.4 3.2 27 25-51 128-154 (216)
141 cd02973 TRX_GRX_like Thioredox 46.7 24 0.00053 21.8 2.8 28 42-74 6-33 (67)
142 cd01523 RHOD_Lact_B Member of 45.2 58 0.0012 21.8 4.7 27 123-149 58-84 (100)
143 PRK07081 acyl carrier protein; 45.1 21 0.00045 24.0 2.4 18 136-153 32-49 (83)
144 PRK11175 universal stress prot 45.0 60 0.0013 26.3 5.5 39 124-164 150-196 (305)
145 PRK10310 PTS system galactitol 44.9 69 0.0015 22.0 5.0 34 128-163 4-38 (94)
146 PRK12449 acyl carrier protein; 44.6 21 0.00046 23.3 2.3 20 134-153 34-53 (80)
147 TIGR00554 panK_bact pantothena 44.3 82 0.0018 26.4 6.3 41 125-165 59-101 (290)
148 PF01507 PAPS_reduct: Phosphoa 43.9 20 0.00044 26.4 2.3 26 17-42 130-155 (174)
149 COG0353 RecR Recombinational D 43.4 1.4E+02 0.0031 23.8 7.0 43 63-106 30-74 (198)
150 COG0363 NagB 6-phosphogluconol 42.6 96 0.0021 25.2 6.2 39 126-165 31-70 (238)
151 PRK05883 acyl carrier protein; 42.4 23 0.0005 24.3 2.3 45 107-153 13-62 (91)
152 TIGR00517 acyl_carrier acyl ca 42.4 24 0.00053 22.9 2.3 20 134-153 32-51 (77)
153 cd08576 GDPD_like_SMaseD_PLD G 42.0 71 0.0015 26.6 5.5 89 51-151 50-141 (265)
154 PF09670 Cas_Cas02710: CRISPR- 41.5 75 0.0016 27.5 5.8 47 103-150 48-94 (379)
155 cd08332 CARD_CASP2 Caspase act 41.4 46 0.00099 22.8 3.6 54 30-83 24-78 (90)
156 TIGR02057 PAPS_reductase phosp 41.0 25 0.00054 28.2 2.6 27 16-42 158-184 (226)
157 PRK05828 acyl carrier protein; 40.3 27 0.00059 23.7 2.3 43 108-153 5-53 (84)
158 cd04121 Rab40 Rab40 subfamily. 38.0 1.5E+02 0.0032 22.7 6.5 37 25-62 127-163 (189)
159 PRK05350 acyl carrier protein; 37.2 33 0.00071 22.7 2.3 43 109-153 7-54 (82)
160 cd08810 CARD_BCL10 Caspase act 36.4 74 0.0016 21.8 4.0 55 29-84 19-74 (84)
161 COG1158 Rho Transcription term 36.3 30 0.00065 30.3 2.4 21 55-75 187-207 (422)
162 COG3433 Aryl carrier domain [S 35.9 34 0.00074 23.0 2.1 18 135-152 27-44 (74)
163 cd00316 Oxidoreductase_nitroge 35.6 2E+02 0.0044 24.3 7.5 26 37-63 222-247 (399)
164 cd08326 CARD_CASP9 Caspase act 35.4 55 0.0012 22.2 3.2 56 29-84 19-75 (84)
165 COG3414 SgaB Phosphotransferas 35.4 1.3E+02 0.0028 20.9 5.2 37 128-164 3-40 (93)
166 PRK00076 recR recombination pr 35.3 2.3E+02 0.0049 22.5 8.7 91 58-151 24-159 (196)
167 cd08323 CARD_APAF1 Caspase act 35.0 56 0.0012 22.4 3.2 54 30-83 18-72 (86)
168 TIGR01688 dltC D-alanine--poly 34.6 42 0.00091 22.4 2.5 24 134-159 28-51 (73)
169 PF09866 DUF2093: Uncharacteri 34.1 38 0.00083 20.2 1.9 17 123-139 2-18 (42)
170 PRK13820 argininosuccinate syn 33.9 49 0.0011 29.1 3.4 36 17-52 136-174 (394)
171 PLN02309 5'-adenylylsulfate re 33.5 47 0.001 29.8 3.3 28 17-44 249-276 (457)
172 PF02887 PK_C: Pyruvate kinase 33.1 44 0.00095 23.6 2.6 26 106-131 73-98 (117)
173 PF00148 Oxidored_nitro: Nitro 33.0 96 0.0021 26.5 5.1 35 31-65 207-242 (398)
174 PRK09184 acyl carrier protein; 32.9 40 0.00086 23.2 2.2 23 135-159 40-62 (89)
175 PF08497 Radical_SAM_N: Radica 32.4 26 0.00057 29.6 1.5 23 126-148 68-91 (302)
176 PF07287 DUF1446: Protein of u 32.2 1.8E+02 0.0038 25.4 6.5 53 108-163 55-107 (362)
177 cd00765 Pyrophosphate_PFK Phos 31.8 1.3E+02 0.0028 27.8 5.9 48 109-164 154-201 (550)
178 cd01520 RHOD_YbbB Member of th 31.8 1.2E+02 0.0026 21.5 4.8 27 123-149 83-110 (128)
179 cd03026 AhpF_NTD_C TRX-GRX-lik 31.7 49 0.0011 22.4 2.5 32 42-78 19-50 (89)
180 PF13660 DUF4147: Domain of un 31.7 45 0.00097 27.3 2.7 28 111-141 104-131 (238)
181 PRK08172 putative acyl carrier 31.5 45 0.00098 22.4 2.3 44 108-153 4-52 (82)
182 TIGR02477 PFKA_PPi diphosphate 31.4 1.3E+02 0.0028 27.7 5.8 47 109-163 149-195 (539)
183 cd08329 CARD_BIRC2_BIRC3 Caspa 31.3 68 0.0015 22.2 3.2 34 51-84 49-82 (94)
184 smart00114 CARD Caspase recrui 30.8 70 0.0015 21.4 3.2 54 30-83 24-78 (88)
185 cd01444 GlpE_ST GlpE sulfurtra 30.8 1.3E+02 0.0029 19.5 4.6 27 123-149 53-79 (96)
186 PRK11106 queuosine biosynthesi 30.6 56 0.0012 26.4 3.1 26 17-42 154-180 (231)
187 COG3908 Uncharacterized protei 30.4 36 0.00078 22.6 1.5 19 119-137 21-39 (77)
188 PRK00414 gmhA phosphoheptose i 30.4 2.2E+02 0.0049 22.0 6.4 37 123-163 109-145 (192)
189 PRK13938 phosphoheptose isomer 30.0 2.4E+02 0.0051 22.1 6.5 45 113-163 103-147 (196)
190 PLN03028 pyrophosphate--fructo 29.4 1.5E+02 0.0034 27.6 6.0 46 109-160 161-206 (610)
191 COG0301 ThiI Thiamine biosynth 29.3 54 0.0012 28.8 2.9 33 16-48 308-345 (383)
192 COG0279 GmhA Phosphoheptose is 29.3 2.6E+02 0.0056 21.9 6.3 49 109-163 95-143 (176)
193 PRK13936 phosphoheptose isomer 29.3 1.4E+02 0.003 23.2 5.0 36 124-163 110-145 (197)
194 PLN02251 pyrophosphate-depende 29.0 1.6E+02 0.0035 27.2 6.0 48 109-164 178-225 (568)
195 cd08812 CARD_RIG-I_like Caspas 29.0 92 0.002 21.2 3.5 32 53-84 48-80 (88)
196 TIGR00434 cysH phosophoadenyly 28.9 54 0.0012 25.6 2.7 27 16-42 143-169 (212)
197 COG1072 CoaA Panthothenate kin 28.8 2.4E+02 0.0051 23.8 6.5 43 123-165 77-121 (283)
198 PF03668 ATP_bind_2: P-loop AT 28.7 1.8E+02 0.0039 24.5 5.8 33 128-163 244-278 (284)
199 TIGR01285 nifN nitrogenase mol 28.2 2.9E+02 0.0063 24.3 7.4 45 111-163 296-341 (432)
200 PLN03046 D-glycerate 3-kinase; 27.9 2.2E+02 0.0048 25.7 6.5 37 127-165 211-249 (460)
201 PRK07085 diphosphate--fructose 27.1 1.5E+02 0.0032 27.4 5.4 38 109-152 152-189 (555)
202 cd01671 CARD Caspase activatio 26.8 1E+02 0.0023 19.7 3.4 32 53-84 41-72 (80)
203 TIGR00424 APS_reduc 5'-adenyly 26.4 62 0.0013 29.1 2.8 28 17-44 254-281 (463)
204 PLN02564 6-phosphofructokinase 26.3 2.9E+02 0.0063 25.1 7.1 60 96-163 151-210 (484)
205 PF00071 Ras: Ras family; Int 25.5 1.8E+02 0.0039 20.6 4.9 42 24-66 120-161 (162)
206 PF09539 DUF2385: Protein of u 25.4 36 0.00079 24.0 1.0 67 28-95 3-71 (96)
207 cd01534 4RHOD_Repeat_3 Member 25.0 1.8E+02 0.0039 19.1 4.5 24 125-148 55-78 (95)
208 PLN02496 probable phosphopanto 24.9 1E+02 0.0022 24.8 3.5 27 124-150 17-43 (209)
209 PF00091 Tubulin: Tubulin/FtsZ 24.9 3.3E+02 0.007 21.3 6.5 43 108-153 109-153 (216)
210 PRK06508 acyl carrier protein; 24.8 70 0.0015 22.1 2.3 21 133-153 31-51 (93)
211 PRK14476 nitrogenase molybdenu 24.7 4.1E+02 0.0088 23.6 7.7 28 34-61 252-279 (455)
212 COG4825 Uncharacterized membra 24.4 1.6E+02 0.0034 25.4 4.7 25 111-141 197-221 (395)
213 PLN02884 6-phosphofructokinase 24.3 2.4E+02 0.0051 25.0 6.0 60 96-163 118-177 (411)
214 PRK00509 argininosuccinate syn 24.2 88 0.0019 27.6 3.3 34 17-50 138-175 (399)
215 KOG1907|consensus 23.9 35 0.00075 33.5 0.8 16 129-144 785-800 (1320)
216 cd08789 CARD_IPS-1_RIG-I Caspa 23.9 1.3E+02 0.0029 20.3 3.5 32 52-84 45-76 (84)
217 KOG3147|consensus 23.5 89 0.0019 25.9 3.0 25 123-147 36-60 (252)
218 cd04910 ACT_AK-Ectoine_1 ACT d 23.4 87 0.0019 20.7 2.5 47 27-73 17-68 (71)
219 PRK13795 hypothetical protein; 23.2 1.1E+02 0.0024 28.5 3.9 27 17-43 375-401 (636)
220 PLN02796 D-glycerate 3-kinase 23.2 3.1E+02 0.0066 23.8 6.4 37 127-165 99-137 (347)
221 smart00857 Resolvase Resolvase 23.1 1.4E+02 0.0031 21.3 3.9 41 28-68 21-64 (148)
222 cd05013 SIS_RpiR RpiR-like pro 23.1 1.9E+02 0.0041 19.8 4.5 34 127-163 61-94 (139)
223 cd05567 PTS_IIB_mannitol PTS_I 22.8 2.4E+02 0.0051 18.6 5.3 23 127-149 1-24 (87)
224 PF06908 DUF1273: Protein of u 22.8 1.9E+02 0.0041 22.4 4.7 50 109-162 27-77 (177)
225 PF13905 Thioredoxin_8: Thiore 22.7 2.3E+02 0.0049 18.4 4.9 47 99-149 11-57 (95)
226 PF09875 DUF2102: Uncharacteri 22.1 3E+02 0.0065 19.7 5.1 51 21-71 5-57 (104)
227 PRK03601 transcriptional regul 21.9 2.7E+02 0.0059 22.1 5.6 37 125-162 87-123 (275)
228 PF04800 ETC_C1_NDUFA4: ETC co 21.8 63 0.0014 22.9 1.6 27 21-47 51-77 (101)
229 PLN02746 hydroxymethylglutaryl 21.8 1.9E+02 0.0041 25.0 4.9 53 30-82 166-237 (347)
230 PRK06437 hypothetical protein; 21.7 69 0.0015 20.6 1.7 15 122-136 51-67 (67)
231 COG5451 Predicted secreted pro 21.3 1E+02 0.0022 22.7 2.6 84 8-95 16-101 (128)
232 PRK14072 6-phosphofructokinase 21.2 2.4E+02 0.0052 24.9 5.5 38 109-152 91-128 (416)
233 PLN00200 argininosuccinate syn 21.2 1E+02 0.0022 27.2 3.2 35 17-51 142-180 (404)
234 COG3588 Fructose-1,6-bisphosph 21.1 1.2E+02 0.0026 25.9 3.4 35 127-161 253-287 (332)
235 cd08785 CARD_CARD9-like Caspas 21.0 1.5E+02 0.0032 20.3 3.3 55 30-84 20-78 (86)
236 PF06840 DUF1241: Protein of u 21.0 1.5E+02 0.0034 22.6 3.7 29 56-84 33-61 (154)
237 PF14542 Acetyltransf_CG: GCN5 20.9 45 0.00097 22.1 0.7 21 29-50 45-65 (78)
238 COG1619 LdcA Uncharacterized p 20.7 1.3E+02 0.0029 25.5 3.7 36 110-147 60-95 (313)
239 cd01519 RHOD_HSP67B2 Member of 20.7 2.2E+02 0.0047 18.9 4.2 37 112-149 53-89 (106)
240 PF13809 Tubulin_2: Tubulin li 20.5 3.9E+02 0.0085 22.6 6.5 50 102-151 116-174 (345)
241 PF01135 PCMT: Protein-L-isoas 20.3 4.4E+02 0.0094 20.8 7.3 87 59-146 3-94 (209)
242 cd05710 SIS_1 A subgroup of th 20.3 2.6E+02 0.0057 19.5 4.7 34 127-163 48-81 (120)
243 cd06059 Tubulin The tubulin su 20.2 4.5E+02 0.0098 22.5 6.9 47 107-154 73-119 (382)
244 cd00158 RHOD Rhodanese Homolog 20.2 1.8E+02 0.004 18.1 3.6 27 123-149 47-73 (89)
245 PRK09270 nucleoside triphospha 20.2 3.4E+02 0.0073 21.2 5.8 26 124-149 29-56 (229)
246 PTZ00441 sporozoite surface pr 20.0 2.6E+02 0.0057 26.0 5.6 35 127-164 150-186 (576)
No 1
>TIGR00269 conserved hypothetical protein TIGR00269.
Probab=99.92 E-value=2.3e-25 Score=159.90 Aligned_cols=91 Identities=33% Similarity=0.631 Sum_probs=82.1
Q ss_pred cceeeccCCCCHHHHHHHHHHcCCcceeCCCCCCCCcchHHHHHHHHHHHHhCCchhhHHHHHhhhcccc-----CCCcc
Q psy16399 17 IPRCKPLKYAYEKEIVMYAYYKKLVYFSTECIFAPNAYRGHARTFLKHLEKIRPASIMDIIHSESKYIEK-----NPANF 91 (165)
Q Consensus 17 v~~IRPL~~v~E~ei~~ya~~~~lp~~~~~CP~~~~~~R~~~k~~l~~le~~~P~~k~~i~~a~~~~~~~-----~~~~~ 91 (165)
++|||||++++|+||+.||..+|||++.++|||+.+++|.++|++|++||+++||++.+|++|+.++... ....+
T Consensus 1 v~rIRPL~~v~E~ei~~ya~~~~lp~~~~~CP~~~~a~R~~~k~~L~~LE~~~P~~k~~i~~s~~~~~~~~~~~~~~~~~ 80 (104)
T TIGR00269 1 VPRIKPLRYIPEKEVVLYAFLNELKVHLDECPYSSLSVRARIRDFLYDLENKKPGVKFSVLRGFEKLIPLLKELSEQEDL 80 (104)
T ss_pred CCcccccccCCHHHHHHHHHHcCCCcCCCCCCCCCCCchHHHHHHHHHHHHHCcChHHHHHHHHHHHHHHhhcccccccC
Confidence 5899999999999999999999999999999999999999999999999999999999999999887732 22345
Q ss_pred cCCC-----CCCccccccchh
Q psy16399 92 NRPK-----TGDTLCKECFFH 107 (165)
Q Consensus 92 ~~c~-----s~~~iCk~C~~~ 107 (165)
..|. |++.+|++|+++
T Consensus 81 ~~C~~CG~pss~~iC~~C~l~ 101 (104)
T TIGR00269 81 RRCERCGEPTSGRICKACKFL 101 (104)
T ss_pred CcCCcCcCcCCccccHhhhhh
Confidence 6665 889999999986
No 2
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=99.52 E-value=2.3e-14 Score=117.36 Aligned_cols=59 Identities=25% Similarity=0.458 Sum_probs=54.4
Q ss_pred hhhhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 107 HAFELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 107 ~~~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
..+.++|.++|++|+|+.+|++|+||+|||+||++|||+|++++++.+.++++.++|||
T Consensus 10 ~~~~~~v~~~i~~~~li~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd 68 (258)
T PRK10696 10 KRLRRQVGQAIADFNMIEEGDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLD 68 (258)
T ss_pred HHHHHHHHHHHHHcCCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEec
Confidence 45899999999999999999999999999999999999999998776567899999997
No 3
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=2.1e-12 Score=106.72 Aligned_cols=56 Identities=32% Similarity=0.566 Sum_probs=50.5
Q ss_pred cchhhhhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 104 CFFHAFELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 104 C~~~~~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
|+...+++++.+.+++++++ +++|+||||||+||++||++|.++..+ +++.++|||
T Consensus 1 ~~~~~~~~~v~~~i~~~~~~--~~~ilVavSGGkDS~~ll~~L~~l~~~----~~~~a~~Vd 56 (298)
T COG0037 1 CLREKLERKVKRAIREFNLI--EYKILVAVSGGKDSLALLHLLKELGRR----IEVEAVHVD 56 (298)
T ss_pred ChHHHHHHHHHHHHHhcccc--CCeEEEEeCCChHHHHHHHHHHHhccC----ceEEEEEec
Confidence 55678899999999999998 999999999999999999999998532 789999997
No 4
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=99.33 E-value=4.7e-12 Score=103.73 Aligned_cols=83 Identities=22% Similarity=0.297 Sum_probs=71.4
Q ss_pred CCCCCCCCCC-CCCcceeeccCCCCHHHHHHHHHHcCCcceeCC-CCCCCCcchHHHHHHHHHHHHhCCchhhHHHHHhh
Q psy16399 4 LSPPPSFTTG-ADSIPRCKPLKYAYEKEIVMYAYYKKLVYFSTE-CIFAPNAYRGHARTFLKHLEKIRPASIMDIIHSES 81 (165)
Q Consensus 4 l~~~~~~~~~-~~~v~~IRPL~~v~E~ei~~ya~~~~lp~~~~~-CP~~~~~~R~~~k~~l~~le~~~P~~k~~i~~a~~ 81 (165)
|+...|.... .+.+++||||.+++++||..||..+|+|++++. ||++....|.++|++|..||+++|+++.+|++++.
T Consensus 158 l~~m~~~~~~~~~~i~iiRPLl~~~k~eI~~y~~~~~lp~~~~~~~~~~~~~~R~~ir~~l~~L~~~~P~~~~~i~~~~~ 237 (258)
T PRK10696 158 LKAMPPKLLSDDGKHIVIRPLAYVAEKDIIKFAEAKEFPIIPCNLCGSQENLQRQVVKEMLRDWEKEYPGRIETMFRALQ 237 (258)
T ss_pred ccccCCeeecCCCceeEEecCccCCHHHHHHHHHHcCCCEeeCCCCCCCchhHHHHHHHHHHHHHHHCccHHHHHHHHHh
Confidence 3444444332 345899999999999999999999999999766 69999999999999999999999999999999999
Q ss_pred hcccc
Q psy16399 82 KYIEK 86 (165)
Q Consensus 82 ~~~~~ 86 (165)
++...
T Consensus 238 ~~~~~ 242 (258)
T PRK10696 238 NVVPS 242 (258)
T ss_pred hcchh
Confidence 98853
No 5
>KOG2840|consensus
Probab=99.00 E-value=1.9e-10 Score=96.40 Aligned_cols=108 Identities=44% Similarity=0.583 Sum_probs=90.9
Q ss_pred CCCCCCCCCCC--CC-CcceeeccCCCCHHHHHHHHHHcCCcceeCCCCCCCCcchHHHHHHHHHHHHhCCchhhHHHHH
Q psy16399 3 PLSPPPSFTTG--AD-SIPRCKPLKYAYEKEIVMYAYYKKLVYFSTECIFAPNAYRGHARTFLKHLEKIRPASIMDIIHS 79 (165)
Q Consensus 3 ~l~~~~~~~~~--~~-~v~~IRPL~~v~E~ei~~ya~~~~lp~~~~~CP~~~~~~R~~~k~~l~~le~~~P~~k~~i~~a 79 (165)
+|.|+..+.++ ++ .+++.|||.|.+|+||+.|+..+-+.+++.+|-|+.++.|+..+.+|.++|+++|++..++.++
T Consensus 191 rl~R~~~~~t~~~e~~~~~r~kplk~~~~keivLya~~~~L~yFs~eCv~ap~a~rg~~r~~lk~le~~~P~~lmd~~rs 270 (347)
T KOG2840|consen 191 RLERLTEITTPSLEMGIIPRLKPLKYASEKEIVLYASLSKLRYFSTECVKAPGASRGDARILLKDLERERPRILMDYCRS 270 (347)
T ss_pred HhhhccccccCccccCccccccccccchhhehhhHHHHHHHHHHHHhhccCCcchHHHHHHHhhhhhhhCchHHHHHHhh
Confidence 67899999988 34 4999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccC---CCcc---cCCC--CCCc-cccccchhhhh
Q psy16399 80 ESKYIEKN---PANF---NRPK--TGDT-LCKECFFHAFE 110 (165)
Q Consensus 80 ~~~~~~~~---~~~~---~~c~--s~~~-iCk~C~~~~~~ 110 (165)
...+..+. .+.. .+|. +++. .|++|-+..-+
T Consensus 271 ~e~~~~~~~~~~p~~g~C~~C~~iss~~r~ckacallegl 310 (347)
T KOG2840|consen 271 GEFLEFKDIAGAPTPGTCSRCGFISSQKRPCKACALLEGL 310 (347)
T ss_pred hHHHhhhHhhcCCCCcchhhhHHHhcchhhHHHHHHHHhH
Confidence 86655432 2223 4444 5555 99999886633
No 6
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=98.93 E-value=3.3e-09 Score=87.61 Aligned_cols=92 Identities=25% Similarity=0.282 Sum_probs=74.5
Q ss_pred CcceeeccCCCCHHHHHHHHHHcCCcceeCCCCCCCCcchHHHHHHHHHHHHhCCchhhHHHHHhhhccccC-------C
Q psy16399 16 SIPRCKPLKYAYEKEIVMYAYYKKLVYFSTECIFAPNAYRGHARTFLKHLEKIRPASIMDIIHSESKYIEKN-------P 88 (165)
Q Consensus 16 ~v~~IRPL~~v~E~ei~~ya~~~~lp~~~~~CP~~~~~~R~~~k~~l~~le~~~P~~k~~i~~a~~~~~~~~-------~ 88 (165)
...+||||++++|+||..||..+|+|++.++||++....|..+|+.|..+++++|+++.++.+++....... .
T Consensus 162 ~~~~iRPL~~~~~~ei~~~~~~~~l~~~~d~~n~~~~~~R~~~r~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (298)
T COG0037 162 GLLIIRPLLYVREKEIELYAKEKGLPYIEDESNYDLRYTRNRIREELLPLEEERPGLKFSLARAFELLRELRLLLEKLSD 241 (298)
T ss_pred CCeeeeecccCCHHHHHHHHHHcCCCEeecCCCCCchhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhhhHHhhhhhhh
Confidence 337999999999999999999999999999999999999999999999999999999999987776554311 1
Q ss_pred Ccc---cCC---CCCCccccccchh
Q psy16399 89 ANF---NRP---KTGDTLCKECFFH 107 (165)
Q Consensus 89 ~~~---~~c---~s~~~iCk~C~~~ 107 (165)
... ..| .+...+|..|..+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (298)
T COG0037 242 EKLLRCLACGAKPSLGKICAFCRKE 266 (298)
T ss_pred HHHhhhhhccCCCChhhhhHHHHHH
Confidence 112 222 2456788888743
No 7
>KOG2840|consensus
Probab=98.88 E-value=1.5e-09 Score=91.08 Aligned_cols=76 Identities=63% Similarity=1.003 Sum_probs=69.5
Q ss_pred cccCCCCCCccccccchhhhhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 90 NFNRPKTGDTLCKECFFHAFELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 90 ~~~~c~s~~~iCk~C~~~~~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
.+.+.+++..+|+.||..-++..+..++-+.+++..|++|.++.|||+||++|+|++..|.+++.+|.++..+-+|
T Consensus 15 ~i~rp~~~q~~c~~cf~~~fe~e~~~ti~~n~l~~rge~v~igasGgkdstvlA~v~~~Ln~r~~~g~~l~Lls~d 90 (347)
T KOG2840|consen 15 TIRRPKQGQKLCGACFWEGFEAEIHPTIVANKLFARGERVAIGASGGKDSTVLAYVLDALNERHDYGLRLFLLSID 90 (347)
T ss_pred hhcCcchhhHHHhhhhhhcchhhhhhhHhccCccCCCCccccccccchhHHHHHHHHHHhhhhcCCCceeeeeecc
Confidence 4566678899999999999999999999999999999999999999999999999999998887788888877665
No 8
>PRK00074 guaA GMP synthase; Reviewed
Probab=98.74 E-value=1.4e-08 Score=90.81 Aligned_cols=62 Identities=24% Similarity=0.233 Sum_probs=47.1
Q ss_pred ccccccchhhhhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 99 TLCKECFFHAFELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 99 ~iCk~C~~~~~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
++|++-..|.+++.+.+.+++-+-.-.+++|+||+|||+||++||+++++. .+.++.++|+|
T Consensus 188 ~i~~~~~~~~~~~~~~~~~~~l~~~v~~~~vlva~SGGvDS~vll~ll~~~-----lg~~v~av~vd 249 (511)
T PRK00074 188 DICGCKGDWTMENFIEEAIEEIREQVGDKKVILGLSGGVDSSVAAVLLHKA-----IGDQLTCVFVD 249 (511)
T ss_pred HhcCCCCCccHHHHHHHHHHHHHHhcCCCcEEEEeCCCccHHHHHHHHHHH-----hCCceEEEEEe
Confidence 577777777766666655544322224589999999999999999999876 36789999987
No 9
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=98.66 E-value=5.3e-08 Score=83.02 Aligned_cols=65 Identities=35% Similarity=0.440 Sum_probs=45.4
Q ss_pred CCCccccccchhh---------hhHHHHHHHHhccccCCC-CEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 96 TGDTLCKECFFHA---------FELEIHHTIVTNKLFEKH-HRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 96 s~~~iCk~C~~~~---------~~~~v~~~i~~~~~~~~~-~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
....+|..|.... -++++.+.+++++-...+ -.++||+|||+||+++++++.+. .+.++.++|+|
T Consensus 19 d~~GvC~~C~~~~~~~~~~~~~~~~~l~~l~~~~k~~~~~~yD~iV~lSGGkDSs~la~ll~~~-----~gl~~l~vt~~ 93 (343)
T TIGR03573 19 DEDGVCSACRNFEEKSKIDWDEREKELEELVDKIKKKGGGRYDCIIGVSGGKDSTYQAHVLKKK-----LGLNPLLVTVD 93 (343)
T ss_pred CCCCCchhhhhHHhhcCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHHHHH-----hCCceEEEEEC
Confidence 4467999999843 234566666665322221 45999999999999999988543 36678888876
No 10
>PRK00919 GMP synthase subunit B; Validated
Probab=98.64 E-value=3.5e-08 Score=83.10 Aligned_cols=36 Identities=33% Similarity=0.344 Sum_probs=31.8
Q ss_pred CCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 125 KHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 125 ~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
++++++||+|||+||++||+++++. .|.++.++|||
T Consensus 20 ~~~kVlVa~SGGVDSsvla~la~~~-----lG~~v~aV~vD 55 (307)
T PRK00919 20 GDGKAIIALSGGVDSSVAAVLAHRA-----IGDRLTPVFVD 55 (307)
T ss_pred CCCCEEEEecCCHHHHHHHHHHHHH-----hCCeEEEEEEE
Confidence 3489999999999999999999875 47789999997
No 11
>PLN02347 GMP synthetase
Probab=98.59 E-value=6.4e-08 Score=87.05 Aligned_cols=62 Identities=24% Similarity=0.232 Sum_probs=48.3
Q ss_pred ccccccchhhhhHHHHHHHHhcc-ccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 99 TLCKECFFHAFELEIHHTIVTNK-LFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 99 ~iCk~C~~~~~~~~v~~~i~~~~-~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
.+|+.-..|.+.+.+.+.+++.. .+.+.++|+||+|||+||+++++++++. .+.++.+++||
T Consensus 201 ~ic~~~~~~~~~~~~~~~i~~i~~~~~~~~~vvvalSGGVDSsvla~l~~~a-----lG~~v~av~id 263 (536)
T PLN02347 201 DVCGVTADWKMQDVLEEQIELIKATVGPDEHVICALSGGVDSTVAATLVHKA-----IGDRLHCVFVD 263 (536)
T ss_pred HHhCcCCCcCcchHHHHHHHHHHHHhccCCeEEEEecCChhHHHHHHHHHHH-----hCCcEEEEEEe
Confidence 46777777877777766555542 2455788999999999999999999985 36779999987
No 12
>PRK08576 hypothetical protein; Provisional
Probab=98.52 E-value=1.3e-07 Score=83.08 Aligned_cols=54 Identities=26% Similarity=0.296 Sum_probs=44.1
Q ss_pred cccchhhhhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 102 KECFFHAFELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 102 k~C~~~~~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
..|++..+++++.+.+++++ +++++||+||||||++||+++.+.. + ++.++|+|
T Consensus 214 N~~~le~~e~~~~~~Lr~~~----~~rVvVafSGGKDStvLL~La~k~~-----~-~V~aV~iD 267 (438)
T PRK08576 214 NREVLEAFEKASIKFLRKFE----EWTVIVPWSGGKDSTAALLLAKKAF-----G-DVTAVYVD 267 (438)
T ss_pred hHHHHHHHHHHHHHHHHHcC----CCCEEEEEcChHHHHHHHHHHHHhC-----C-CCEEEEeC
Confidence 34777888888888999973 3589999999999999999988762 2 38888886
No 13
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=98.49 E-value=4e-07 Score=80.00 Aligned_cols=70 Identities=17% Similarity=0.125 Sum_probs=65.7
Q ss_pred CCcceeeccCCCCHHHHHHHHHHcCCcceeCCCCCCCCcchHHHH-HHHHHHHHhCCchhhHHHHHhhhcc
Q psy16399 15 DSIPRCKPLKYAYEKEIVMYAYYKKLVYFSTECIFAPNAYRGHAR-TFLKHLEKIRPASIMDIIHSESKYI 84 (165)
Q Consensus 15 ~~v~~IRPL~~v~E~ei~~ya~~~~lp~~~~~CP~~~~~~R~~~k-~~l~~le~~~P~~k~~i~~a~~~~~ 84 (165)
+.+++||||..++++||..||..+|+|++.++|..+....|.++| +++-.|++.+|++..++.++.....
T Consensus 150 ~~~~liRPLL~~~k~ei~~ya~~~~l~~~~D~sN~~~~~~RN~iR~~vlP~L~~~~p~~~~~l~r~a~~~~ 220 (436)
T PRK10660 150 AGTRLIRPLLARSREELEQYAQAHGLRWIEDDSNQDDRYDRNFLRLRVLPLLQQRWPHFAEATARSAALCA 220 (436)
T ss_pred CCCcEeCCCccCCHHHHHHHHHHcCCCEEECCCCCCCccccHHHHHHhhHHHHHhChHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999999999999999 6999999999999999999987765
No 14
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=98.46 E-value=2.1e-07 Score=78.20 Aligned_cols=54 Identities=26% Similarity=0.241 Sum_probs=37.4
Q ss_pred hhhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 108 AFELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 108 ~~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
.++......|+.. +...++++|++||||||+||||++.+.-.. .+.++.++|||
T Consensus 11 ~le~esi~iLrea--~~~f~~~vv~~SGGKDS~VLL~La~ka~~~--~~~~~~vl~iD 64 (301)
T PRK05253 11 QLEAESIHILREV--AAEFENPVMLYSIGKDSSVMLHLARKAFYP--GKLPFPLLHVD 64 (301)
T ss_pred HHHHHHHHHHHHH--HHhCCCEEEEecCCHHHHHHHHHHHHhhcc--cCCCeeEEEEe
Confidence 3444444444442 223368999999999999999999876322 24568899987
No 15
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=98.46 E-value=1.5e-07 Score=73.04 Aligned_cols=45 Identities=24% Similarity=0.343 Sum_probs=38.9
Q ss_pred CcceeeccCCCCHHHHHHHHHHcCCcceeCCCCCCCCcchHHHHH
Q psy16399 16 SIPRCKPLKYAYEKEIVMYAYYKKLVYFSTECIFAPNAYRGHART 60 (165)
Q Consensus 16 ~v~~IRPL~~v~E~ei~~ya~~~~lp~~~~~CP~~~~~~R~~~k~ 60 (165)
.+++||||.+++|+||..||..+|+|++.++|+++....|.++|+
T Consensus 137 ~~~~iRPLl~~~k~ei~~~~~~~~i~~~~D~tN~~~~~~Rn~iR~ 181 (182)
T PF01171_consen 137 GIKLIRPLLYVSKDEIRAYAKENGIPYVEDPTNYDERYKRNRIRN 181 (182)
T ss_dssp TCEEE-GGGCS-HHHHHHHHHHTT-SSBS-CCGGCTTSHHHHHHH
T ss_pred CcccCCcchhCCHHHHHHHHHHCCCcEEECcCCCCCcccHHHHhC
Confidence 499999999999999999999999999999999999999998874
No 16
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=98.43 E-value=6e-07 Score=69.61 Aligned_cols=47 Identities=23% Similarity=0.161 Sum_probs=44.4
Q ss_pred CcceeeccCCCCHHHHHHHHHHcCCcceeCCCCCCCCcchHHHHHHH
Q psy16399 16 SIPRCKPLKYAYEKEIVMYAYYKKLVYFSTECIFAPNAYRGHARTFL 62 (165)
Q Consensus 16 ~v~~IRPL~~v~E~ei~~ya~~~~lp~~~~~CP~~~~~~R~~~k~~l 62 (165)
.+++||||..++++||..||+.+|+|++.++||++....|..+|+-|
T Consensus 141 ~~~iirPL~~~~k~ei~~~~~~~~lp~~~~~~~~~~~~~R~~~r~~~ 187 (189)
T TIGR02432 141 GGQIIRPLLGISKSEIEEYLKENGLPWFEDETNQDDKYLRNRIRHEL 187 (189)
T ss_pred CCEEECCCCCCCHHHHHHHHHHcCCCeeeCCCCCCCcccHHHHHHHh
Confidence 68999999999999999999999999999999999999999998654
No 17
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=98.42 E-value=3e-07 Score=74.70 Aligned_cols=45 Identities=20% Similarity=0.342 Sum_probs=34.3
Q ss_pred hHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 110 ELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 110 ~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
.+.+++.++++ +++|+|++||||||+||||++.+. +.++.++++|
T Consensus 29 ~e~i~~a~~~~-----~~~i~vs~SGGKDS~vlL~L~~~~------~~~i~vvfiD 73 (241)
T PRK02090 29 QERLAWALENF-----GGRLALVSSFGAEDAVLLHLVAQV------DPDIPVIFLD 73 (241)
T ss_pred HHHHHHHHHHc-----CCCEEEEecCCHHHHHHHHHHHhc------CCCCcEEEec
Confidence 34455556554 356999999999999999999986 3457888876
No 18
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=98.32 E-value=1.6e-06 Score=73.68 Aligned_cols=41 Identities=27% Similarity=0.440 Sum_probs=34.9
Q ss_pred CCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 124 EKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 124 ~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
..=++|.|++||||||.+|||++.++.++.+. .++.++|+|
T Consensus 25 ~~f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~-~~i~VlfiD 65 (407)
T COG3969 25 NTFPRVCVSFSGGKDSGLMLHLVAEVARENGR-DKISVLFID 65 (407)
T ss_pred hcCCeEEEEecCCCchhHHHHHHHHHHHHhCC-CceEEEEEc
Confidence 44579999999999999999999999887532 369999987
No 19
>PRK08349 hypothetical protein; Validated
Probab=98.29 E-value=1.4e-06 Score=68.71 Aligned_cols=55 Identities=24% Similarity=0.278 Sum_probs=49.2
Q ss_pred CcceeeccCCCCHHHHHHHHHHcCCcce----eCCCCC-----CCCcchHHHHHHHHHHHHhCC
Q psy16399 16 SIPRCKPLKYAYEKEIVMYAYYKKLVYF----STECIF-----APNAYRGHARTFLKHLEKIRP 70 (165)
Q Consensus 16 ~v~~IRPL~~v~E~ei~~ya~~~~lp~~----~~~CP~-----~~~~~R~~~k~~l~~le~~~P 70 (165)
.++++|||+.++++||+.||...|++.+ ...||+ ...+.+.+++++++++|++-|
T Consensus 134 ~i~i~rPL~~~~K~eI~~~a~~~g~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (198)
T PRK08349 134 DLPVLRPLIGLDKEEIVKIAKEIGTFEISIEPEPPCPFVPKYPVVRASLGEFEKILEEVYVLGP 197 (198)
T ss_pred CCeEEcCCCCCCHHHHHHHHHHcCChhhhhCCCCCCcCCCCCCcCCCCHHHHHHHHHHHhccCC
Confidence 4789999999999999999999997766 678999 456899999999999998877
No 20
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=98.25 E-value=1.3e-06 Score=73.34 Aligned_cols=36 Identities=36% Similarity=0.343 Sum_probs=29.2
Q ss_pred EEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 128 RIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 128 ~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
+.++++||||||+||||++.+.-.. .+..+.++|||
T Consensus 21 ~~vv~~SGGKDS~VlLhLa~kaf~~--~~~p~~vl~ID 56 (294)
T TIGR02039 21 RPVMLYSIGKDSSVLLHLARKAFYP--GPLPFPLLHVD 56 (294)
T ss_pred CcEEEEecChHHHHHHHHHHHHhcc--cCCCeEEEEEe
Confidence 4678999999999999999977322 24678999997
No 21
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=98.24 E-value=1.6e-06 Score=70.75 Aligned_cols=36 Identities=25% Similarity=0.266 Sum_probs=28.6
Q ss_pred CCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 125 KHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 125 ~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
..++|+||+|||+||+++++++.+. .+.++.+++++
T Consensus 21 ~~~~V~vglSGGiDSsvla~l~~~~-----~~~~~~~~~~~ 56 (250)
T TIGR00552 21 GAKGVVLGLSGGIDSAVVAALCVEA-----LGEQNHALLLP 56 (250)
T ss_pred CCCCEEEECCCcHHHHHHHHHHHHh-----hCCceEEEEEC
Confidence 4678999999999999999998765 23467777664
No 22
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=98.23 E-value=2.2e-06 Score=71.10 Aligned_cols=51 Identities=27% Similarity=0.253 Sum_probs=38.3
Q ss_pred hHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 110 ELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 110 ~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
.+-+...+++.+---.++++++|+|||+||++++.++++. .|.++++++||
T Consensus 5 ~~~ie~~i~~ir~~vg~~kvi~alSGGVDSsv~a~L~~~A-----iGd~l~cvfVD 55 (315)
T COG0519 5 ENFIEEAIEEIREQVGDGKVILALSGGVDSSVAAVLAHRA-----IGDQLTCVFVD 55 (315)
T ss_pred HHHHHHHHHHHHHHhCCceEEEEecCCCcHHHHHHHHHHH-----hhcceEEEEec
Confidence 3333444333322235789999999999999999999987 58889999997
No 23
>KOG1622|consensus
Probab=98.22 E-value=1.6e-06 Score=75.78 Aligned_cols=63 Identities=22% Similarity=0.221 Sum_probs=52.3
Q ss_pred ccccccchhhhhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 99 TLCKECFFHAFELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 99 ~iCk~C~~~~~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
.+|+.|-.|.++.+..+.|+..+-+-...+|++++|||+||+|+..++.+.-. .-+++++|||
T Consensus 203 ~vc~~~~n~tmenre~e~I~~i~k~vG~~~Vl~~vSGgvdStV~a~Ll~~alg----~~R~~ai~vd 265 (552)
T KOG1622|consen 203 DVCGCSGNFTMENREEECINEIRKWVGDYKVLVAVSGGVDSTVCAALLRRALG----PDRVHAIHVD 265 (552)
T ss_pred HHcCCccCcchhhhhHHHHHHHHHHhcccceEEEecCCchHHHHHHHHHHhhC----CCceEEEEec
Confidence 68999999999999998877643333478999999999999999999998731 2679999997
No 24
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=98.18 E-value=2.3e-06 Score=73.81 Aligned_cols=36 Identities=25% Similarity=0.291 Sum_probs=31.4
Q ss_pred CCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 124 EKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 124 ~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
..+++++|++|||+||+++++++.+. |.++.++|+|
T Consensus 170 g~~~kvlvllSGGiDS~vaa~ll~kr------G~~V~av~~~ 205 (371)
T TIGR00342 170 GTQGKVLALLSGGIDSPVAAFMMMKR------GCRVVAVHFF 205 (371)
T ss_pred CcCCeEEEEecCCchHHHHHHHHHHc------CCeEEEEEEe
Confidence 45689999999999999999999653 6789999986
No 25
>PRK13980 NAD synthetase; Provisional
Probab=98.16 E-value=3.8e-06 Score=69.14 Aligned_cols=49 Identities=18% Similarity=0.136 Sum_probs=34.9
Q ss_pred hhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 109 FELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 109 ~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
+..-+++.+++.+ -++|+||+|||+||+++++++.+.. .+.++.++|++
T Consensus 17 l~~~l~~~v~~~g----~~~vvv~lSGGiDSsv~a~l~~~~~----~~~~v~av~~~ 65 (265)
T PRK13980 17 IVDFIREEVEKAG----AKGVVLGLSGGIDSAVVAYLAVKAL----GKENVLALLMP 65 (265)
T ss_pred HHHHHHHHHHHcC----CCcEEEECCCCHHHHHHHHHHHHHh----CccceEEEEee
Confidence 3334444444443 3789999999999999999998752 12568888874
No 26
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=98.11 E-value=3.9e-06 Score=68.31 Aligned_cols=51 Identities=14% Similarity=0.075 Sum_probs=34.6
Q ss_pred HHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 111 LEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 111 ~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
+.+...|+++---...++|+||+|||+||+++++++.+... ..++.+++++
T Consensus 8 ~~l~~~l~~~~~~~~~~~vvv~lSGGiDSs~~a~la~~~~~----~~~v~~~~~~ 58 (248)
T cd00553 8 NALVLFLRDYLRKSGFKGVVLGLSGGIDSALVAALAVRALG----RENVLALFMP 58 (248)
T ss_pred HHHHHHHHHHHHHhCCCCEEEeCCCcHHHHHHHHHHHHHhC----cccEEEEECC
Confidence 33444444431112347899999999999999999987621 2568888764
No 27
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=98.02 E-value=1.3e-05 Score=61.63 Aligned_cols=48 Identities=19% Similarity=0.097 Sum_probs=44.5
Q ss_pred CCCcceeeccCCCCHHHHHHHHHHcCCcceeCCCCCCCCcchHHHHHH
Q psy16399 14 ADSIPRCKPLKYAYEKEIVMYAYYKKLVYFSTECIFAPNAYRGHARTF 61 (165)
Q Consensus 14 ~~~v~~IRPL~~v~E~ei~~ya~~~~lp~~~~~CP~~~~~~R~~~k~~ 61 (165)
.+.+++||||..++++||..||+..|+|+..++|+++....|..+|.-
T Consensus 135 ~~~~~virPl~~~~k~eI~~~~~~~~l~~~~~~~~~~~~~~r~~~r~~ 182 (185)
T cd01992 135 FGGGRLIRPLLGITRAEIEAYLRENGLPWWEDPSNEDPRYTRNRIRHE 182 (185)
T ss_pred CCCCeEECCCCCCCHHHHHHHHHHcCCCeEECCCCCCCcccHHHHHHh
Confidence 446899999999999999999999999999999999999999998854
No 28
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=98.02 E-value=5.8e-06 Score=69.85 Aligned_cols=24 Identities=38% Similarity=0.452 Sum_probs=22.0
Q ss_pred CCEEEEEecCCccHHHHHHHHHHH
Q psy16399 126 HHRIAIAASGGKDSTVLAHVLKVL 149 (165)
Q Consensus 126 ~~~vlvavSGG~DS~~Ll~ll~~l 149 (165)
+++|+||+|||+||++|++++++.
T Consensus 16 ~~kVvValSGGVDSsvla~ll~~~ 39 (311)
T TIGR00884 16 DAKVIIALSGGVDSSVAAVLAHRA 39 (311)
T ss_pred CCcEEEEecCChHHHHHHHHHHHH
Confidence 489999999999999999999864
No 29
>PRK13795 hypothetical protein; Provisional
Probab=97.97 E-value=9.3e-06 Score=74.56 Aligned_cols=50 Identities=22% Similarity=0.157 Sum_probs=34.3
Q ss_pred hhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 109 FELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 109 ~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
++.+..+.|++.-. ..+++|+||+||||||+|||+++.+.- .++.++++|
T Consensus 227 ~~~~ai~~Ir~~~~-~~~~~v~Va~SGGKDS~vll~L~~~a~------~~~~vvfiD 276 (636)
T PRK13795 227 KEKEAVNFIRGVAE-KYNLPVSVSFSGGKDSLVVLDLAREAL------KDFKAFFNN 276 (636)
T ss_pred HHHHHHHHHHHHHH-HcCCCEEEEecCcHHHHHHHHHHHHhC------CCcEEEEEe
Confidence 44444455555311 125689999999999999999998751 236677776
No 30
>KOG2594|consensus
Probab=97.96 E-value=1.3e-05 Score=68.42 Aligned_cols=51 Identities=22% Similarity=0.471 Sum_probs=46.0
Q ss_pred CCccccccchhhhhHHHHH--HHHhccccCCCCEEEEEecCCccHHHHHHHHH
Q psy16399 97 GDTLCKECFFHAFELEIHH--TIVTNKLFEKHHRIAIAASGGKDSTVLAHVLK 147 (165)
Q Consensus 97 ~~~iCk~C~~~~~~~~v~~--~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~ 147 (165)
...+|.+||..+++.+++. ....+.+..+.+.+++++|||..|+|||++++
T Consensus 31 k~~~C~eCFv~~v~~KfR~qla~~~~~~~~~sk~vLlv~~G~ssSlvlLd~vh 83 (396)
T KOG2594|consen 31 KDAFCDECFVNNVRNKFRLQLAVPSHKMGTPSKNVLLVFDGGSSSLVLLDFVH 83 (396)
T ss_pred chhHHHHHHHHHHHHHHHHHhhcchhhcCCcccceEEEecCCcchHhHHHHHH
Confidence 3579999999999999999 55566778888999999999999999999999
No 31
>PRK13794 hypothetical protein; Provisional
Probab=97.96 E-value=1e-05 Score=72.04 Aligned_cols=36 Identities=28% Similarity=0.326 Sum_probs=28.9
Q ss_pred CCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 125 KHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 125 ~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
.+++++||+||||||+|+|+++.+.- +.++.++++|
T Consensus 246 ~~~~v~vs~SGGKDS~v~L~L~~~~~-----~~~~~vvfiD 281 (479)
T PRK13794 246 INKPVTVAYSGGKDSLATLLLALKAL-----GINFPVLFND 281 (479)
T ss_pred cCCCEEEEecchHHHHHHHHHHHHHh-----CCCeEEEEEE
Confidence 35789999999999999999987652 3456778776
No 32
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=97.95 E-value=1.2e-05 Score=67.93 Aligned_cols=54 Identities=24% Similarity=0.216 Sum_probs=36.5
Q ss_pred hhhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 108 AFELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 108 ~~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
.++..-...|+.. ....+++++++||||||+||||++.+.-.. .+..+-++|||
T Consensus 21 ~le~esi~ilrea--~~~f~~~~v~~SgGKDS~VlLhLa~kaf~~--~~~~~pvl~VD 74 (312)
T PRK12563 21 RLEAESIHILREV--VAECSKPVMLYSIGKDSVVMLHLAMKAFRP--TRPPFPLLHVD 74 (312)
T ss_pred HHHHHHHHHHHHH--HHhcCCcEEEecCChHHHHHHHHHHHhhcc--cCCCeeEEEeC
Confidence 3444444444442 122356889999999999999999976321 24568899987
No 33
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=97.95 E-value=9.3e-06 Score=70.38 Aligned_cols=34 Identities=26% Similarity=0.424 Sum_probs=30.6
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 126 HHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 126 ~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
+.++++++|||+||.|++++|.+. |+++.++|+|
T Consensus 180 ~gkvlvllSGGiDSpVAa~ll~kr------G~~V~~v~f~ 213 (381)
T PRK08384 180 QGKVVALLSGGIDSPVAAFLMMKR------GVEVIPVHIY 213 (381)
T ss_pred CCcEEEEEeCChHHHHHHHHHHHc------CCeEEEEEEE
Confidence 468999999999999999999874 8899999985
No 34
>PRK08557 hypothetical protein; Provisional
Probab=97.94 E-value=1.6e-05 Score=69.68 Aligned_cols=34 Identities=38% Similarity=0.381 Sum_probs=28.0
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 126 HHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 126 ~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
+..+++++|||+||+|+|+++.+. ..++.++++|
T Consensus 181 ~~~i~vsfSGGKDS~vlL~L~~~~------~~~i~vvfvD 214 (417)
T PRK08557 181 GYAINASFSGGKDSSVSTLLAKEV------IPDLEVIFID 214 (417)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHh------CCCCEEEEEE
Confidence 568999999999999999999876 2346778876
No 35
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=97.91 E-value=5.9e-06 Score=58.34 Aligned_cols=22 Identities=55% Similarity=0.721 Sum_probs=20.1
Q ss_pred EEEEecCCccHHHHHHHHHHHh
Q psy16399 129 IAIAASGGKDSTVLAHVLKVLN 150 (165)
Q Consensus 129 vlvavSGG~DS~~Ll~ll~~l~ 150 (165)
|+||+|||+||+++++++.++.
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~~ 22 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKLG 22 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHhC
Confidence 5899999999999999999874
No 36
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=97.89 E-value=1.5e-05 Score=54.07 Aligned_cols=34 Identities=44% Similarity=0.569 Sum_probs=28.9
Q ss_pred EEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 129 IAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 129 vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
|+|++|||+||+++++++.+.+. .+.++.++|+|
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~~---~~~~~~~~~~~ 34 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLKS---GGPEVVALVVV 34 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHHh---cCCCEEEEEeH
Confidence 58999999999999999998852 35678888875
No 37
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=97.86 E-value=1.8e-05 Score=64.87 Aligned_cols=26 Identities=35% Similarity=0.597 Sum_probs=22.7
Q ss_pred cCCCCEEEEEecCCccHHHHHHHHHH
Q psy16399 123 FEKHHRIAIAASGGKDSTVLAHVLKV 148 (165)
Q Consensus 123 ~~~~~~vlvavSGG~DS~~Ll~ll~~ 148 (165)
++...+++||+|||+||++|+.+..+
T Consensus 14 ik~~~kv~vAfSGGvDSslLa~la~~ 39 (269)
T COG1606 14 IKEKKKVVVAFSGGVDSSLLAKLAKE 39 (269)
T ss_pred HhhcCeEEEEecCCccHHHHHHHHHH
Confidence 55666999999999999999999854
No 38
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=97.85 E-value=1.5e-05 Score=68.15 Aligned_cols=62 Identities=19% Similarity=0.062 Sum_probs=54.5
Q ss_pred CCcceeeccCCCCHHHHHHHHHHcCCcceeCCCCCC-CCcchHHHHHHHHHHHHhCCchhhHH
Q psy16399 15 DSIPRCKPLKYAYEKEIVMYAYYKKLVYFSTECIFA-PNAYRGHARTFLKHLEKIRPASIMDI 76 (165)
Q Consensus 15 ~~v~~IRPL~~v~E~ei~~ya~~~~lp~~~~~CP~~-~~~~R~~~k~~l~~le~~~P~~k~~i 76 (165)
.+.++|+||..++++||+.||+.+|||+...+||++ .-..+..++++|++++...||.+.+.
T Consensus 155 ~l~~~i~PL~~~~K~eVr~~A~~~gl~~~~k~~s~~icf~~~~~~~~fl~~~~~~~pG~~~~~ 217 (346)
T PRK00143 155 QLAKLLFPLGELTKPEVREIAEEAGLPVAKKKDSQGICFIGERDYRDFLKRYLPAQPGEIVDL 217 (346)
T ss_pred HhcceeccCccCCHHHHHHHHHHcCCCcCCCCCCCcccCCCchhHHHHHHHhcccCCCCEEcc
Confidence 356899999999999999999999999999999985 34556789999999999899987765
No 39
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=97.84 E-value=1.9e-05 Score=68.55 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=29.5
Q ss_pred CCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEe
Q psy16399 125 KHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSI 164 (165)
Q Consensus 125 ~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~v 164 (165)
.+++++|++|||.||+++++++.+. |.++.++|+
T Consensus 175 ~~gkvvvllSGGiDS~vaa~l~~k~------G~~v~av~~ 208 (394)
T PRK01565 175 TSGKALLLLSGGIDSPVAGYLAMKR------GVEIEAVHF 208 (394)
T ss_pred CCCCEEEEECCChhHHHHHHHHHHC------CCEEEEEEE
Confidence 4578999999999999999999663 678889887
No 40
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=97.81 E-value=2.4e-05 Score=69.67 Aligned_cols=34 Identities=24% Similarity=0.211 Sum_probs=30.4
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 126 HHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 126 ~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
++++++.+|||+||.|+++++.+. |.++.++|+|
T Consensus 177 ~gk~lvllSGGiDS~va~~~~~kr------G~~v~~l~f~ 210 (482)
T PRK01269 177 QEDVLSLISGGFDSGVASYMLMRR------GSRVHYCFFN 210 (482)
T ss_pred cCeEEEEEcCCchHHHHHHHHHHc------CCEEEEEEEe
Confidence 478999999999999999999765 7789999986
No 41
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=97.79 E-value=4e-05 Score=68.24 Aligned_cols=66 Identities=11% Similarity=-0.002 Sum_probs=58.9
Q ss_pred CcceeeccCCCCHHHHHHHHHHcCCcceeCCCCC--CCCcchHHHHHHHHHHHHhCCchhhHHHHHhh
Q psy16399 16 SIPRCKPLKYAYEKEIVMYAYYKKLVYFSTECIF--APNAYRGHARTFLKHLEKIRPASIMDIIHSES 81 (165)
Q Consensus 16 ~v~~IRPL~~v~E~ei~~ya~~~~lp~~~~~CP~--~~~~~R~~~k~~l~~le~~~P~~k~~i~~a~~ 81 (165)
.+++.|||+..+++||+.+|+..|++.++..||+ +..+.|-.+|..++++|+..|+++++++.++.
T Consensus 309 ~~~v~rPLi~~dK~EIi~~a~~ig~~~~s~~~p~~C~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (482)
T PRK01269 309 DTLILRPLIAMDKEDIIDLAREIGTEDFAKTMPEYCGVISKKPTVKAVKEKIEAEEKKFDFAILDRVV 376 (482)
T ss_pred CCceecCCcCCCHHHHHHHHHHhCChhhcccCCCCceeeCCCCcCCCCHHHHHHHhhcCCHHHHHHHH
Confidence 3678899999999999999999999777889998 45578999999999999999999999887774
No 42
>PF10288 DUF2392: Protein of unknown function (DUF2392); InterPro: IPR019407 Cytoplasmic thiouridylase is a highly conserved complex responsible for the 2-thiolation of cytosolic tRNAs []. Inactivation of this complex leads to a loss of thiolation on tRNAs, decreased viability and aberrant cell development. This entry represents the second subunit of this complex.
Probab=97.75 E-value=8e-05 Score=53.44 Aligned_cols=68 Identities=19% Similarity=0.242 Sum_probs=57.1
Q ss_pred CCcceeeccCCCCHHHHHHHHHHcCCccee--CCCC-------CCCCcchHHHHHHHHHHHHhCCchhhHHHHHhhh
Q psy16399 15 DSIPRCKPLKYAYEKEIVMYAYYKKLVYFS--TECI-------FAPNAYRGHARTFLKHLEKIRPASIMDIIHSESK 82 (165)
Q Consensus 15 ~~v~~IRPL~~v~E~ei~~ya~~~~lp~~~--~~CP-------~~~~~~R~~~k~~l~~le~~~P~~k~~i~~a~~~ 82 (165)
+.+..+|||..+..+||..|+...|++... ..++ -...+...-+++++..||..+|++..++++...+
T Consensus 30 ~~i~~~rPLRd~l~kEi~~Y~~~~~l~~~~~~~~~~~~~~~~~~~~~SI~~L~~~fi~~Le~~ypstvsTV~RT~~K 106 (107)
T PF10288_consen 30 WDIKIIRPLRDLLKKEIAFYNRLCGLESVLVPSLDTDSSQSKSSKNMSINELTEDFIDNLEENYPSTVSTVVRTADK 106 (107)
T ss_pred CCceEEeehHhCCHHHHHHHHHHhCcchhhcccccccccccccCcCCCHHHHHHHHHHHHhCcCcchHhHHHHHhhc
Confidence 478999999999999999999999998333 3343 2244889999999999999999999999987654
No 43
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=97.72 E-value=5e-05 Score=61.36 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=28.5
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 126 HHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 126 ~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
+++++++.|||+||+||||++.+.. +.++-+++||
T Consensus 25 ~~~~~~s~S~Gkds~VlL~l~~~~~-----~~~i~vv~vD 59 (226)
T TIGR02057 25 PHGLVQTSAFGIQALVTLHLLSSIS-----EPMIPVIFID 59 (226)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhh-----CCCCCEEEEe
Confidence 5679999999999999999999884 1246677776
No 44
>PRK02628 nadE NAD synthetase; Reviewed
Probab=97.60 E-value=9.9e-05 Score=68.32 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=35.4
Q ss_pred HHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccC-CccEEEEEe
Q psy16399 111 LEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQY-GLDLVLLSI 164 (165)
Q Consensus 111 ~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~-~~~l~~~~v 164 (165)
.++....+..+.. ..++|+||+|||+||+++|.++.+.-.+.+. ..++.++++
T Consensus 347 ~~v~~l~~~~~~~-~~~~vvvglSGGiDSal~l~l~~~a~~~lg~~~~~v~~v~m 400 (679)
T PRK02628 347 IQVSGLAQRLRAT-GLKKVVIGISGGLDSTHALLVAAKAMDRLGLPRKNILAYTM 400 (679)
T ss_pred HHHHHHHHHHHHc-CCCeEEEECCCCHHHHHHHHHHHHHHHhhCCCcceEEEEEC
Confidence 3343333433333 4789999999999999999888876443221 266887764
No 45
>PRK06850 hypothetical protein; Provisional
Probab=97.43 E-value=0.00028 Score=63.29 Aligned_cols=41 Identities=24% Similarity=0.227 Sum_probs=27.7
Q ss_pred CCCEEEEEecCCccHHHHHHHHHHHhhhccC---CccEEEEEeC
Q psy16399 125 KHHRIAIAASGGKDSTVLAHVLKVLNEKYQY---GLDLVLLSID 165 (165)
Q Consensus 125 ~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~---~~~l~~~~vd 165 (165)
.+..++||+||||||+|+|+++.+.-.+.+. .-.+.+++.|
T Consensus 33 ~~~P~vV~fSGGKDStavL~Lv~~Al~~lp~e~r~k~v~Vi~~D 76 (507)
T PRK06850 33 DNRPWVIGYSGGKDSTAVLQLVWNALAGLPPEKRTKPVYVISSD 76 (507)
T ss_pred CCCCeEEeCCCCchHHHHHHHHHHHHHhcchhccCCcEEEEECC
Confidence 4556899999999999999988754222111 1246666655
No 46
>PRK00876 nadE NAD synthetase; Reviewed
Probab=97.32 E-value=0.00047 Score=58.72 Aligned_cols=50 Identities=18% Similarity=0.194 Sum_probs=32.7
Q ss_pred hhhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEe
Q psy16399 108 AFELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSI 164 (165)
Q Consensus 108 ~~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~v 164 (165)
.+..-+++.++++ . ..++|+|++|||+||+++++++.+... ..++.++++
T Consensus 18 ~i~~~l~~~V~~~--~-~~~~VvVgLSGGIDSSvvaaLa~~a~g----~~~v~av~~ 67 (326)
T PRK00876 18 RIRAAIREQVRGT--L-RRRGVVLGLSGGIDSSVTAALCVRALG----KERVYGLLM 67 (326)
T ss_pred HHHHHHHHHHHHH--c-CCCCEEEEccCCHHHHHHHHHHHHhhC----CCcEEEEEe
Confidence 3444555555553 1 234899999999999999999876411 134566554
No 47
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=97.28 E-value=0.00024 Score=58.00 Aligned_cols=36 Identities=19% Similarity=0.200 Sum_probs=27.2
Q ss_pred hHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHH
Q psy16399 110 ELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVL 149 (165)
Q Consensus 110 ~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l 149 (165)
..-+++.+++. ..++++||+|||.||.+++.+.++.
T Consensus 6 ~~~L~~~~~~~----g~~~vVvglSGGiDSav~A~La~~A 41 (242)
T PF02540_consen 6 VDFLRDYVKKS----GAKGVVVGLSGGIDSAVVAALAVKA 41 (242)
T ss_dssp HHHHHHHHHHH----TTSEEEEEETSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh----CCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 33444555553 3378999999999999999999865
No 48
>PTZ00323 NAD+ synthase; Provisional
Probab=97.23 E-value=0.00036 Score=58.60 Aligned_cols=37 Identities=16% Similarity=0.107 Sum_probs=27.3
Q ss_pred hhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHH
Q psy16399 109 FELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVL 149 (165)
Q Consensus 109 ~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l 149 (165)
....+.+.+++. +.++++||+|||.||++++.+..+.
T Consensus 33 ~~~~L~~~l~~~----g~~~vVVglSGGVDSav~aaLa~~a 69 (294)
T PTZ00323 33 KCAKLNEYMRRC----GLKGCVTSVSGGIDSAVVLALCARA 69 (294)
T ss_pred HHHHHHHHHHHc----CCCcEEEECCCCHHHHHHHHHHHHH
Confidence 333444444442 3478999999999999999999875
No 49
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.13 E-value=0.00048 Score=56.78 Aligned_cols=33 Identities=36% Similarity=0.523 Sum_probs=26.9
Q ss_pred CEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 127 HRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 127 ~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
..++++.|||+||+|+||+..+.. .++-++|+|
T Consensus 40 ~~~~~~~S~Gkds~V~l~L~~k~~------~~~~vif~D 72 (261)
T COG0175 40 NPVVVSFSGGKDSTVLLHLAAKAF------PDFPVIFLD 72 (261)
T ss_pred CCeEEEecCchhHHHHHHHHHHhc------CCCcEEEEe
Confidence 349999999999999999999773 227777776
No 50
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=97.12 E-value=0.00067 Score=53.81 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=29.5
Q ss_pred hhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHH
Q psy16399 109 FELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKV 148 (165)
Q Consensus 109 ~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~ 148 (165)
+.+.+.+.+++. +..+.+|.+.+|||.||.+++.++.+
T Consensus 2 ~r~~l~~av~~r--l~~~~~i~~~LSGGlDSs~i~~~~~~ 39 (255)
T PF00733_consen 2 LRELLEEAVARR--LRSDKPIGILLSGGLDSSAIAALAAR 39 (255)
T ss_dssp HHHHHHHHHHHH--CGCTSEEEEE--SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HhcCCCEEEECCCChhHHHHHHHHHH
Confidence 445666777764 55788999999999999999999998
No 51
>PRK13981 NAD synthetase; Provisional
Probab=96.83 E-value=0.0019 Score=58.09 Aligned_cols=51 Identities=14% Similarity=0.072 Sum_probs=33.2
Q ss_pred hhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCC-ccEEEEEe
Q psy16399 109 FELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYG-LDLVLLSI 164 (165)
Q Consensus 109 ~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~-~~l~~~~v 164 (165)
+.+.+...|+++=--...++++||+|||.||.+++.++.+. .+ .++.++++
T Consensus 263 ~~~~l~~~l~~~~~~~~~~~~vvglSGGiDSa~~a~la~~a-----~g~~~v~~~~~ 314 (540)
T PRK13981 263 DYRALVLGLRDYVRKNGFPGVVLGLSGGIDSALVAAIAVDA-----LGAERVRAVMM 314 (540)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHH-----hCcCcEEEEEC
Confidence 44444455555411123478999999999999999998764 12 34666654
No 52
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=96.81 E-value=0.0026 Score=56.21 Aligned_cols=40 Identities=15% Similarity=0.263 Sum_probs=31.6
Q ss_pred hhhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHH
Q psy16399 108 AFELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVL 149 (165)
Q Consensus 108 ~~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l 149 (165)
.+.+.+.+.+++. ...+..|.+.+|||.||++++.++.+.
T Consensus 237 ~l~~~l~~aV~~r--~~~~~~vg~~LSGGlDSs~iaa~a~~~ 276 (467)
T TIGR01536 237 ELRSLLEDAVKRR--LVADVPVGVLLSGGLDSSLVAAIARRE 276 (467)
T ss_pred HHHHHHHHHHHHH--hccCCceEEEecCChhHHHHHHHHHHh
Confidence 3556666666664 346778999999999999999999876
No 53
>PRK00768 nadE NAD synthetase; Reviewed
Probab=96.35 E-value=0.0043 Score=51.55 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=21.8
Q ss_pred CCCEEEEEecCCccHHHHHHHHHHH
Q psy16399 125 KHHRIAIAASGGKDSTVLAHVLKVL 149 (165)
Q Consensus 125 ~~~~vlvavSGG~DS~~Ll~ll~~l 149 (165)
+...++||+|||.||.+.+.+..+.
T Consensus 37 g~~g~VlGlSGGIDSav~a~L~~~A 61 (268)
T PRK00768 37 GLKSLVLGISGGQDSTLAGRLAQLA 61 (268)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHH
Confidence 4578999999999999999987755
No 54
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=95.89 E-value=0.0062 Score=47.61 Aligned_cols=50 Identities=20% Similarity=0.043 Sum_probs=38.5
Q ss_pred cceeeccC--CCCHHHHHHHHHHcCCcc---eeCCCCCCCC-cchHHHHHHHHHHH
Q psy16399 17 IPRCKPLK--YAYEKEIVMYAYYKKLVY---FSTECIFAPN-AYRGHARTFLKHLE 66 (165)
Q Consensus 17 v~~IRPL~--~v~E~ei~~ya~~~~lp~---~~~~CP~~~~-~~R~~~k~~l~~le 66 (165)
+++||||. .++++||..||..+|+|+ .++.|+.+.. ..+...++.+..++
T Consensus 121 ~~iirPL~~~~~~K~ei~~~a~~~gl~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~ 176 (202)
T cd01990 121 LGVRSPLAEAGLGKAEIRELARELGLPTWDKPAMACLASRIPYGTEITEERLKKVE 176 (202)
T ss_pred cCCcCchhhcCCCHHHHHHHHHHcCCCCcCCCCcchHHhhCcCCCCCCHHHHHHHH
Confidence 67999999 599999999999999998 4567876533 34455666666666
No 55
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=95.82 E-value=0.0091 Score=48.21 Aligned_cols=24 Identities=42% Similarity=0.531 Sum_probs=21.2
Q ss_pred CCEEEEEecCCccHHHHHHHHHHH
Q psy16399 126 HHRIAIAASGGKDSTVLAHVLKVL 149 (165)
Q Consensus 126 ~~~vlvavSGG~DS~~Ll~ll~~l 149 (165)
+-++.||+|||.||++.+.+|..+
T Consensus 60 ~~kiaVA~SGG~DSsas~iilR~~ 83 (255)
T COG1365 60 KPKIAVAYSGGVDSSASAIILRWA 83 (255)
T ss_pred CceEEEEecCCcchHHHHHHHHhh
Confidence 368999999999999999988765
No 56
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=95.73 E-value=0.012 Score=49.00 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=21.8
Q ss_pred CCCEEEEEecCCccHHHHHHHHHHH
Q psy16399 125 KHHRIAIAASGGKDSTVLAHVLKVL 149 (165)
Q Consensus 125 ~~~~vlvavSGG~DS~~Ll~ll~~l 149 (165)
....+++++|||.||++.+.+..+.
T Consensus 24 ~~k~~VlGiSGGiDSa~~~~La~~A 48 (268)
T COG0171 24 GFKGVVLGLSGGIDSALVLALAVRA 48 (268)
T ss_pred CCCCeEEEcccChHHHHHHHHHHHH
Confidence 3467999999999999999988865
No 57
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=95.61 E-value=0.025 Score=51.66 Aligned_cols=40 Identities=15% Similarity=0.283 Sum_probs=30.9
Q ss_pred hhhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHH
Q psy16399 108 AFELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVL 149 (165)
Q Consensus 108 ~~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l 149 (165)
.+...+.+.+++. +.....|.|.+|||.||++++.++.+.
T Consensus 209 ~lr~~L~~aV~~r--l~sdvpvgv~LSGGLDSSlIaala~~~ 248 (578)
T PLN02549 209 VLREAFEKAVIKR--LMTDVPFGVLLSGGLDSSLVASIAARH 248 (578)
T ss_pred HHHHHHHHHHHHH--hccCCceeEeecCCccHHHHHHHHHHh
Confidence 3555666666664 345668999999999999999999876
No 58
>PRK00074 guaA GMP synthase; Reviewed
Probab=95.28 E-value=0.014 Score=52.62 Aligned_cols=41 Identities=15% Similarity=0.088 Sum_probs=35.6
Q ss_pred CcceeeccCCCCHHHHHHHHHHcCCc---ceeCCCCCCCCcchH
Q psy16399 16 SIPRCKPLKYAYEKEIVMYAYYKKLV---YFSTECIFAPNAYRG 56 (165)
Q Consensus 16 ~v~~IRPL~~v~E~ei~~ya~~~~lp---~~~~~CP~~~~~~R~ 56 (165)
...+||||..++++||+.||+.+||| +...+||+..-+.|-
T Consensus 355 ~~~ii~PL~~l~K~EIr~~a~~~gLp~~~~~~~p~p~~~la~Ri 398 (511)
T PRK00074 355 KLKLVEPLRELFKDEVRKLGLELGLPEEIVYRHPFPGPGLAIRI 398 (511)
T ss_pred hcccccchhhcCHHHHHHHHHHcCCCHHHhCCCCCCCCceeeEE
Confidence 36799999999999999999999999 455699998777773
No 59
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=95.09 E-value=0.033 Score=50.66 Aligned_cols=41 Identities=15% Similarity=0.254 Sum_probs=31.7
Q ss_pred hhhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHh
Q psy16399 108 AFELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLN 150 (165)
Q Consensus 108 ~~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~ 150 (165)
.+...+.+.+++. +..+..|.+.+|||.||++++.++.+..
T Consensus 211 ~lr~~L~~aV~~r--l~sdvpvGv~LSGGLDSSlIaala~~~~ 251 (554)
T PRK09431 211 ELRDALEAAVKKR--LMSDVPYGVLLSGGLDSSLISAIAKKYA 251 (554)
T ss_pred HHHHHHHHHHHHH--hcCCCceEEEcCCCccHHHHHHHHHHhh
Confidence 3555666666664 3456789999999999999999998763
No 60
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=95.06 E-value=0.016 Score=49.76 Aligned_cols=60 Identities=18% Similarity=0.127 Sum_probs=42.3
Q ss_pred CCcceeeccCCCCHHHHHHHHHHcCCcceeCCCCCCCC---cchHHHHHHHHHHHHhCCchhhHH
Q psy16399 15 DSIPRCKPLKYAYEKEIVMYAYYKKLVYFSTECIFAPN---AYRGHARTFLKHLEKIRPASIMDI 76 (165)
Q Consensus 15 ~~v~~IRPL~~v~E~ei~~ya~~~~lp~~~~~CP~~~~---~~R~~~k~~l~~le~~~P~~k~~i 76 (165)
.+..+|+||..++++||+.||+.+|+|+... |-+.+ -.+..++++|.+.....||-..++
T Consensus 159 ~l~~~i~PL~~~~K~EVr~~A~~~gl~~~~k--~~Sq~iCFi~~~~~~~fl~~~~~~~~g~iv~~ 221 (352)
T TIGR00420 159 QLAKLLFPLGELLKPEVRQIAKNAGLPTAEK--KDSQGICFIGERKFRDFLKKYLPVKPGVIITV 221 (352)
T ss_pred HhhhhcccCCCCCHHHHHHHHHHcCCCCCCC--CCCCCeEEecCCCHHHHHHHhCCCCCCcEEeC
Confidence 3578999999999999999999999997552 33222 113347777776655566664443
No 61
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=95.04 E-value=0.045 Score=50.00 Aligned_cols=39 Identities=15% Similarity=0.239 Sum_probs=30.0
Q ss_pred hhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHH
Q psy16399 109 FELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVL 149 (165)
Q Consensus 109 ~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l 149 (165)
+...+.+.+++. +..+..|.+.+|||.||++++.++.+.
T Consensus 245 l~~~L~~AV~~r--l~sd~pvg~~LSGGlDSs~Iaa~~~~~ 283 (589)
T TIGR03104 245 ILEALRLAVKRR--LVADVPVGVLLSGGLDSSLIVGLLAEA 283 (589)
T ss_pred HHHHHHHHHHHH--hhcCCceeEEecCCccHHHHHHHHHHh
Confidence 455556666654 355678999999999999999988765
No 62
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=94.92 E-value=0.039 Score=50.54 Aligned_cols=41 Identities=17% Similarity=0.266 Sum_probs=31.5
Q ss_pred hhhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHh
Q psy16399 108 AFELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLN 150 (165)
Q Consensus 108 ~~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~ 150 (165)
.+...+.+.+++. +.....|.+.+|||.||++++.++.++.
T Consensus 221 ~lr~~L~~AV~~r--l~sdvpvGv~LSGGLDSSlIaala~~~~ 261 (586)
T PTZ00077 221 EIREALEAAVRKR--LMGDVPFGLFLSGGLDSSIVAAIVAKLI 261 (586)
T ss_pred HHHHHHHHHHHHH--hcCCCceEEEecCCchHHHHHHHHHHhh
Confidence 3555666666664 3456789999999999999999998763
No 63
>KOG0573|consensus
Probab=94.87 E-value=0.044 Score=48.60 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=22.7
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHh
Q psy16399 126 HHRIAIAASGGKDSTVLAHVLKVLN 150 (165)
Q Consensus 126 ~~~vlvavSGG~DS~~Ll~ll~~l~ 150 (165)
..+|.|-+|||+||+++++++++.-
T Consensus 250 ~s~VcVlfSGGvDs~vvA~l~h~~v 274 (520)
T KOG0573|consen 250 ESNVCVLFSGGVDSTVVAVLAHYVV 274 (520)
T ss_pred cCcEEEEecCCchHHHHHHHHHhhc
Confidence 3689999999999999999999873
No 64
>PRK08576 hypothetical protein; Provisional
Probab=94.82 E-value=0.025 Score=50.14 Aligned_cols=37 Identities=16% Similarity=0.215 Sum_probs=31.8
Q ss_pred CcceeeccCCCCHHHHHHHHHHcCCc----------ceeCC-CCCCCC
Q psy16399 16 SIPRCKPLKYAYEKEIVMYAYYKKLV----------YFSTE-CIFAPN 52 (165)
Q Consensus 16 ~v~~IRPL~~v~E~ei~~ya~~~~lp----------~~~~~-CP~~~~ 52 (165)
.+.+|+||.+.+|+||..|+..+|+| .+.|. ||+...
T Consensus 361 ~v~rI~PL~~Wte~DV~~YI~~~gLP~npLY~~Gy~rIGC~~Cp~~~~ 408 (438)
T PRK08576 361 KILVVMPIKFWSGAMVQLYILMNGLELNPLYYKGFYRLGCYICPSLRS 408 (438)
T ss_pred CeEEEeChhhCCHHHHHHHHHHhCCCCCcHHhCCCCccCCcCCcchHh
Confidence 68899999999999999999999999 45554 987643
No 65
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=94.79 E-value=0.05 Score=49.87 Aligned_cols=39 Identities=15% Similarity=0.243 Sum_probs=28.9
Q ss_pred hhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHH
Q psy16399 109 FELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVL 149 (165)
Q Consensus 109 ~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l 149 (165)
+...+.+.++.. +..+..|.+.+|||.||.+++.++.+.
T Consensus 243 l~~~l~~aV~~r--l~~d~~vg~~LSGGlDSs~Iaa~~~~~ 281 (628)
T TIGR03108 243 LIERLREAVRSR--MVADVPLGAFLSGGVDSSAVVALMAGL 281 (628)
T ss_pred HHHHHHHHHHHH--HhcCCcceEeecCCccHHHHHHHHHHh
Confidence 445555555553 345667999999999999999988764
No 66
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=94.54 E-value=0.035 Score=46.66 Aligned_cols=41 Identities=15% Similarity=-0.030 Sum_probs=35.9
Q ss_pred CcceeeccCCCCHHHHHHHHHHcCCcc---eeCCCCCCCCcchH
Q psy16399 16 SIPRCKPLKYAYEKEIVMYAYYKKLVY---FSTECIFAPNAYRG 56 (165)
Q Consensus 16 ~v~~IRPL~~v~E~ei~~ya~~~~lp~---~~~~CP~~~~~~R~ 56 (165)
...+|+||..++.+||+.+|+..|+|. ...+||...-+.|-
T Consensus 140 ~~~vi~PL~~l~K~EVR~lar~lGLp~~~~~~~Pfp~p~La~Ri 183 (295)
T cd01997 140 KLKLIEPLRDLFKDEVRELGRELGLPEEIVERHPFPGPGLAVRI 183 (295)
T ss_pred hCCcccccccCcHHHHHHHHHHcCCCchhhCCCCCCCCcceeEE
Confidence 467999999999999999999999998 67889988776663
No 67
>KOG2594|consensus
Probab=94.14 E-value=0.07 Score=45.96 Aligned_cols=82 Identities=16% Similarity=0.272 Sum_probs=61.4
Q ss_pred CCCCCCCCCC--------CCCcceeeccCCCCHHHHHHHHHHcCCcceeC-----CCCC-CCCcchHHHHHHHHHHHHhC
Q psy16399 4 LSPPPSFTTG--------ADSIPRCKPLKYAYEKEIVMYAYYKKLVYFST-----ECIF-APNAYRGHARTFLKHLEKIR 69 (165)
Q Consensus 4 l~~~~~~~~~--------~~~v~~IRPL~~v~E~ei~~ya~~~~lp~~~~-----~CP~-~~~~~R~~~k~~l~~le~~~ 69 (165)
++|+.++-+. .+.++.+|||.-+.+.||..|....|+++..+ .=|. ...+.-.-.-.++..|++++
T Consensus 219 ~GRG~sis~~v~~~d~r~~~d~~llrPLrDl~~~Ei~~y~~l~~l~~~~c~~~~k~~~~~~q~sI~~lT~afva~Lqn~f 298 (396)
T KOG2594|consen 219 KGRGGSISTDVQVVDKRPKGDVKLLRPLRDLLSLEITSYCLLDGLAYYFCQGRRKTVELASQCSINDLTSAFVALLQNEF 298 (396)
T ss_pred hccCccceehhhhhccccCCCceeehhHHHHHHHHHHHHHHhhcCCchhhhHHHhhccchhhccHHHHHHHHHHHHHhhc
Confidence 4666666554 22589999999999999999999999995211 0111 12356667788999999999
Q ss_pred CchhhHHHHHhhhccc
Q psy16399 70 PASIMDIIHSESKYIE 85 (165)
Q Consensus 70 P~~k~~i~~a~~~~~~ 85 (165)
|++.--.++...++..
T Consensus 299 ~S~vsTV~rTaaKl~~ 314 (396)
T KOG2594|consen 299 PSTVSTVVRTAAKLTV 314 (396)
T ss_pred chHHHHHHhhhhhhcC
Confidence 9999888887777764
No 68
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=93.28 E-value=0.085 Score=40.35 Aligned_cols=31 Identities=23% Similarity=0.131 Sum_probs=28.2
Q ss_pred CCcceeeccCCCCHHHHHHHHHHcCCcceeC
Q psy16399 15 DSIPRCKPLKYAYEKEIVMYAYYKKLVYFST 45 (165)
Q Consensus 15 ~~v~~IRPL~~v~E~ei~~ya~~~~lp~~~~ 45 (165)
..++++|||..++++||+.||..+|++.+.-
T Consensus 131 ~~~~i~rPl~~~~K~eI~~~a~~~gl~~~~~ 161 (177)
T cd01712 131 TDLPILRPLIGFDKEEIIGIARRIGTYDISI 161 (177)
T ss_pred CCCeEECCCCCCCHHHHHHHHHHcCCcceec
Confidence 3589999999999999999999999998764
No 69
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=93.26 E-value=0.08 Score=43.07 Aligned_cols=36 Identities=11% Similarity=-0.051 Sum_probs=31.1
Q ss_pred CCcceeeccCCCCHHHHHHHHHHcCCcce-eCCCCCC
Q psy16399 15 DSIPRCKPLKYAYEKEIVMYAYYKKLVYF-STECIFA 50 (165)
Q Consensus 15 ~~v~~IRPL~~v~E~ei~~ya~~~~lp~~-~~~CP~~ 50 (165)
+....|+||..++++||..||+.+|+|.. ...||.+
T Consensus 150 d~~~~i~PL~~l~K~eV~~lA~~~g~p~~i~~k~psa 186 (250)
T TIGR00552 150 DGGCDIAPIGDLFKTQVYELAKRLNVPERIIEKPPTA 186 (250)
T ss_pred CCccCccccCCCcHHHHHHHHHHHCccHHHhCCCCCc
Confidence 35678999999999999999999999974 5777765
No 70
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=93.04 E-value=0.15 Score=46.28 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=30.6
Q ss_pred hhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHh
Q psy16399 109 FELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLN 150 (165)
Q Consensus 109 ~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~ 150 (165)
+...+...+++. ......+.+.+|||.||++++.++.+..
T Consensus 215 l~~~l~~sV~~r--~~advpvg~~lSGGlDSS~Iaa~a~~~~ 254 (542)
T COG0367 215 LRSLLEDAVKRR--LVADVPVGVFLSGGLDSSLIAAIAAEEL 254 (542)
T ss_pred HHHHHHHHHHHH--hccCCcEEEEeCCCccHHHHHHHHHHhc
Confidence 555555555554 2456789999999999999999999773
No 71
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=92.89 E-value=0.097 Score=39.63 Aligned_cols=36 Identities=19% Similarity=0.045 Sum_probs=30.3
Q ss_pred CCCcceeeccCCCCHHHHHHHHHHcCCccee-CCCCC
Q psy16399 14 ADSIPRCKPLKYAYEKEIVMYAYYKKLVYFS-TECIF 49 (165)
Q Consensus 14 ~~~v~~IRPL~~v~E~ei~~ya~~~~lp~~~-~~CP~ 49 (165)
...+++++||..+++.||+.++...|+|+.. -.|-.
T Consensus 112 ~~~~~v~~PL~~~~K~ei~~~~~~~g~~~~~s~sC~~ 148 (169)
T cd01995 112 ENGIKIHAPLIDLSKAEIVRLGGELGVPLELTWSCYN 148 (169)
T ss_pred CCCeEEEeCcccCCHHHHHHHHhHcCCChhheeeccC
Confidence 3457899999999999999999999999775 34544
No 72
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=92.41 E-value=0.2 Score=44.75 Aligned_cols=33 Identities=30% Similarity=0.382 Sum_probs=24.1
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 126 HHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 126 ~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
+++++++.|||+|| +|+|++.+.. ..+-++++|
T Consensus 115 ~~~iavasSG~eds-vLlhl~~~~~------~~ipV~flD 147 (463)
T TIGR00424 115 GNDIAIAFSGAEDV-ALIEYAHLTG------RPFRVFSLD 147 (463)
T ss_pred CCCEEEEeccHHHH-HHHHHHHHhC------CCCcEEEec
Confidence 45799999988886 5788887762 335666665
No 73
>PLN02309 5'-adenylylsulfate reductase
Probab=91.86 E-value=0.27 Score=43.89 Aligned_cols=33 Identities=30% Similarity=0.382 Sum_probs=22.8
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 126 HHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 126 ~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
+++++++.|||.|| ||+|++.+.. .++-++++|
T Consensus 110 ~~~ia~~~SG~ed~-vll~l~~~~~------~~ipV~flD 142 (457)
T PLN02309 110 GNDIAIAFSGAEDV-ALIEYAHLTG------RPFRVFSLD 142 (457)
T ss_pred CCCEEEEecchHHH-HHHHHHHHhC------CCCcEEEec
Confidence 45799999977776 6778877652 334566665
No 74
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=91.77 E-value=0.18 Score=44.02 Aligned_cols=36 Identities=14% Similarity=0.064 Sum_probs=32.4
Q ss_pred cceeeccCCC---CHHHHHHHHHHcCCcceeC-CCCCCCC
Q psy16399 17 IPRCKPLKYA---YEKEIVMYAYYKKLVYFST-ECIFAPN 52 (165)
Q Consensus 17 v~~IRPL~~v---~E~ei~~ya~~~~lp~~~~-~CP~~~~ 52 (165)
+.+|.|+... +++|++.||+.+|||+... +|||+.+
T Consensus 135 l~ViaPlre~~~~sr~ev~~~A~~~Gip~~~~~~~pyS~d 174 (385)
T cd01999 135 LKIIAPWRDWEFLSREEEIEYAEEHGIPVPVTKKKPYSID 174 (385)
T ss_pred CEEEcchhhhhcCCHHHHHHHHHHcCCCCcccCCCCCccC
Confidence 6899999988 9999999999999999875 8999844
No 75
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=91.52 E-value=0.16 Score=43.58 Aligned_cols=56 Identities=23% Similarity=0.194 Sum_probs=40.1
Q ss_pred CcceeeccCCCCHHHHHHHHHHcCCcceeC-----CCCCCCCcchHHHHHHHHHHHHhCCchhhH
Q psy16399 16 SIPRCKPLKYAYEKEIVMYAYYKKLVYFST-----ECIFAPNAYRGHARTFLKHLEKIRPASIMD 75 (165)
Q Consensus 16 ~v~~IRPL~~v~E~ei~~ya~~~~lp~~~~-----~CP~~~~~~R~~~k~~l~~le~~~P~~k~~ 75 (165)
+.++|+||..++++||+.||+.+|||+... -|=...+. ++++|.+.....||-..+
T Consensus 157 l~~ii~PL~~~~K~eVr~~A~~~gl~~~~k~~s~~iCFi~~~~----~~~fl~~~~~~~~G~i~~ 217 (349)
T cd01998 157 LSRLIFPLGDLTKPEVREIAKELGLPVAKKKDSQGICFIGERN----FRDFLKEYLPEKPGEIVD 217 (349)
T ss_pred HhheeecCCCCCHHHHHHHHHHcCCCCCCCCCCCceEEecCCC----HHHHHHHhcCCCCCCEEC
Confidence 368999999999999999999999996542 25333333 566777665556765443
No 76
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=91.26 E-value=0.21 Score=46.75 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=18.3
Q ss_pred CCCEEEEEecCCccHHHHHHHH
Q psy16399 125 KHHRIAIAASGGKDSTVLAHVL 146 (165)
Q Consensus 125 ~~~~vlvavSGG~DS~~Ll~ll 146 (165)
+.+.++|++|||.||.+.+.+.
T Consensus 347 g~~g~vlglSGGiDSa~~a~lv 368 (700)
T PLN02339 347 GASGFLLPLSGGADSSSVAAIV 368 (700)
T ss_pred CCCeEEEEccCCHHHHHHHHHH
Confidence 4578999999999999866664
No 77
>PRK00919 GMP synthase subunit B; Validated
Probab=90.83 E-value=0.2 Score=42.48 Aligned_cols=41 Identities=20% Similarity=-0.015 Sum_probs=34.3
Q ss_pred CcceeeccCCCCHHHHHHHHHHcCCccee---CCCCCCCCcchH
Q psy16399 16 SIPRCKPLKYAYEKEIVMYAYYKKLVYFS---TECIFAPNAYRG 56 (165)
Q Consensus 16 ~v~~IRPL~~v~E~ei~~ya~~~~lp~~~---~~CP~~~~~~R~ 56 (165)
.+.+++||..++.+||+.+|+..|+|... .++|...-+.|-
T Consensus 153 ~~~Ii~PL~~l~K~EVr~la~~lGLp~~~~~r~p~~~pcLa~Ri 196 (307)
T PRK00919 153 VLKIVEPLRDLYKDEVREVARALGLPEEISERMPFPGPGLAVRI 196 (307)
T ss_pred cCCcccCchhCcHHHHHHHHHHcCCChhhhCCCCCCCCceeEEe
Confidence 35799999999999999999999999864 677777666553
No 78
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=90.80 E-value=0.4 Score=41.87 Aligned_cols=34 Identities=24% Similarity=0.438 Sum_probs=29.2
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 126 HHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 126 ~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
..++++=+|||.||=|..+++-+- |.+++++|.+
T Consensus 175 ~Gk~l~LlSGGIDSPVA~~l~mkR------G~~v~~v~f~ 208 (383)
T COG0301 175 QGKVLLLLSGGIDSPVAAWLMMKR------GVEVIPVHFG 208 (383)
T ss_pred CCcEEEEEeCCCChHHHHHHHHhc------CCEEEEEEEc
Confidence 458999999999999999988653 8999999974
No 79
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=90.17 E-value=0.3 Score=41.31 Aligned_cols=35 Identities=14% Similarity=0.090 Sum_probs=28.9
Q ss_pred CcceeeccCCCCHHHHHHHHHHcCCcce-eCCCCCC
Q psy16399 16 SIPRCKPLKYAYEKEIVMYAYYKKLVYF-STECIFA 50 (165)
Q Consensus 16 ~v~~IRPL~~v~E~ei~~ya~~~~lp~~-~~~CP~~ 50 (165)
...+|+||..++++||+.+|+..|+|.- .-.||+.
T Consensus 155 ~~~ii~PL~~l~K~EVr~la~~lgLp~~~~~~~Pf~ 190 (311)
T TIGR00884 155 KLKLVEPLRELFKDEVRKLGKELGLPEEIVWRHPFP 190 (311)
T ss_pred cCceEEEcccCcHHHHHHHHHHcCCCHHHhhCCCCC
Confidence 4679999999999999999999999942 3456643
No 80
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=89.80 E-value=0.37 Score=41.63 Aligned_cols=28 Identities=14% Similarity=-0.011 Sum_probs=24.5
Q ss_pred CcceeeccCCCCHHHHHHHHHHcCCcce
Q psy16399 16 SIPRCKPLKYAYEKEIVMYAYYKKLVYF 43 (165)
Q Consensus 16 ~v~~IRPL~~v~E~ei~~ya~~~~lp~~ 43 (165)
+-+.|+||...+++||+.+|+..|++.+
T Consensus 156 l~~~ifPLg~~~K~eVr~~A~~~gl~~~ 183 (360)
T PRK14665 156 LQRMLLPMGGMTKSEARAYAAERGFEKV 183 (360)
T ss_pred HhheeccCcCCCHHHHHHHHHHCCCCcc
Confidence 3467999999999999999999998544
No 81
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=89.49 E-value=0.34 Score=40.87 Aligned_cols=28 Identities=21% Similarity=0.134 Sum_probs=26.0
Q ss_pred CCcceeeccCCCCHHHHHHHHHHcCCcc
Q psy16399 15 DSIPRCKPLKYAYEKEIVMYAYYKKLVY 42 (165)
Q Consensus 15 ~~v~~IRPL~~v~E~ei~~ya~~~~lp~ 42 (165)
+...+|+||.+.+|.||-.|+..+|||+
T Consensus 178 g~~~rV~PL~~Wte~DIw~Yi~~~~IP~ 205 (301)
T PRK05253 178 GEHIRVFPLSNWTELDIWQYIERENIPI 205 (301)
T ss_pred CCeEEEeehhhCCHHHHHHHHHHcCCCC
Confidence 3578999999999999999999999997
No 82
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=88.80 E-value=1.1 Score=31.81 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=28.0
Q ss_pred EEEEEecCCccHHHHHHHHHHHhhhccCCccEEEE
Q psy16399 128 RIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLL 162 (165)
Q Consensus 128 ~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~ 162 (165)
+|+++.+||.-|+++..-++++.++.+.++++.++
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~~~i~a~ 36 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVPLEAAAG 36 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEe
Confidence 58999999999999999999887765455555554
No 83
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=88.80 E-value=0.43 Score=38.63 Aligned_cols=36 Identities=14% Similarity=0.086 Sum_probs=29.2
Q ss_pred CCCCCCCCCcceeeccCCCCHHHHHHHHHHcCCcce
Q psy16399 8 PSFTTGADSIPRCKPLKYAYEKEIVMYAYYKKLVYF 43 (165)
Q Consensus 8 ~~~~~~~~~v~~IRPL~~v~E~ei~~ya~~~~lp~~ 43 (165)
.+++...+.+.+|+||..-+|+||..|+..+|||+.
T Consensus 160 ~~~~~~~~~~~rv~Pi~~Wt~~dV~~Yi~~~~lp~~ 195 (241)
T PRK02090 160 LPVLEIDGGRFKINPLADWTNEDVWAYLKEHDLPYH 195 (241)
T ss_pred CceeeecCCeEEEeehhhCCHHHHHHHHHHcCCCCC
Confidence 344433337899999999999999999999999963
No 84
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=88.08 E-value=0.93 Score=39.53 Aligned_cols=27 Identities=26% Similarity=0.248 Sum_probs=24.6
Q ss_pred CcceeeccCCCCHHHHHHHHHHcC-Ccc
Q psy16399 16 SIPRCKPLKYAYEKEIVMYAYYKK-LVY 42 (165)
Q Consensus 16 ~v~~IRPL~~v~E~ei~~ya~~~~-lp~ 42 (165)
.++++|||+..+++||+.+|+..| +++
T Consensus 313 ~lpilRPLi~~dK~EIi~~Ar~iGT~~~ 340 (381)
T PRK08384 313 DLPIYRPLIGMDKEEIVAIAKTIGTFEL 340 (381)
T ss_pred CCcEEeeCCCCCHHHHHHHHHHcCCccc
Confidence 579999999999999999999999 663
No 85
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=87.99 E-value=1.2 Score=36.30 Aligned_cols=33 Identities=21% Similarity=0.205 Sum_probs=27.0
Q ss_pred ceeeccCC--CCHHHHHHHHHHcCCcce---eCCCCCC
Q psy16399 18 PRCKPLKY--AYEKEIVMYAYYKKLVYF---STECIFA 50 (165)
Q Consensus 18 ~~IRPL~~--v~E~ei~~ya~~~~lp~~---~~~CP~~ 50 (165)
..++||.. ++.+||..||+..|+|+. +..|..+
T Consensus 134 ~~~~PL~~~~l~K~eIr~la~~~gl~~~~~ps~~Cl~s 171 (252)
T TIGR00268 134 NGVSPWAEFGITKKEIREIAKSLGISFPDKPSEACLAS 171 (252)
T ss_pred CCCCcchhcCCCHHHHHHHHHHcCCCccCCCCCCceEe
Confidence 44699975 799999999999999987 3568654
No 86
>PRK14561 hypothetical protein; Provisional
Probab=85.73 E-value=1.7 Score=34.08 Aligned_cols=49 Identities=14% Similarity=0.038 Sum_probs=31.2
Q ss_pred CcceeeccCCCCHHHHHHHHHHcCCcceeCCCCCCCCcchHHHHHHHHH
Q psy16399 16 SIPRCKPLKYAYEKEIVMYAYYKKLVYFSTECIFAPNAYRGHARTFLKH 64 (165)
Q Consensus 16 ~v~~IRPL~~v~E~ei~~ya~~~~lp~~~~~CP~~~~~~R~~~k~~l~~ 64 (165)
.+++||||..++++||+.+|+..=.--....=+....-+..++|..+.+
T Consensus 124 gi~iirPL~~~~K~eI~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
T PRK14561 124 GVQYIRPLLGFGRKTIDRLVERLFEIEEGESEEIPKSDYETELRELLRE 172 (194)
T ss_pred CcEEEeeCCCCCHHHHHHHHHhhEEEEeccCCCcCccchHHHHHHHHHH
Confidence 5788999999999999999976432211222233344455556655544
No 87
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=85.13 E-value=0.87 Score=38.37 Aligned_cols=29 Identities=21% Similarity=0.132 Sum_probs=26.4
Q ss_pred CCCcceeeccCCCCHHHHHHHHHHcCCcc
Q psy16399 14 ADSIPRCKPLKYAYEKEIVMYAYYKKLVY 42 (165)
Q Consensus 14 ~~~v~~IRPL~~v~E~ei~~ya~~~~lp~ 42 (165)
++...+|.||...+|.||-.|+..+|||+
T Consensus 169 ~g~~~RV~PL~~WTe~DVW~YI~~~~IP~ 197 (294)
T TIGR02039 169 KGESVRVFPLSNWTELDIWRYIAAENIPI 197 (294)
T ss_pred cCCcEEEechhhCCHHHHHHHHHHcCCCC
Confidence 34578999999999999999999999997
No 88
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=84.48 E-value=1.2 Score=38.98 Aligned_cols=37 Identities=16% Similarity=0.125 Sum_probs=31.8
Q ss_pred Ccceeecc--CCCCHHHHHHHHHHcCCccee-CCCCCCCC
Q psy16399 16 SIPRCKPL--KYAYEKEIVMYAYYKKLVYFS-TECIFAPN 52 (165)
Q Consensus 16 ~v~~IRPL--~~v~E~ei~~ya~~~~lp~~~-~~CP~~~~ 52 (165)
.+.+|.|| ..++++|++.||..+|||+.. +.|||+.+
T Consensus 134 ~l~viaPLrew~l~r~ei~~ya~~~Gip~~~~~~~pys~d 173 (394)
T TIGR00032 134 DLKVIAPWRDLNFTREEEIEYAIQCGIPYPMSKEKPYSID 173 (394)
T ss_pred CCeEECchhhcCCCHHHHHHHHHHcCCCeeEecCCCCcCC
Confidence 36899999 778999999999999999986 56999744
No 89
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=84.46 E-value=0.91 Score=36.79 Aligned_cols=36 Identities=14% Similarity=0.067 Sum_probs=31.3
Q ss_pred CcceeeccCCCCHHHHHHHHHHcCCcce-eCCCCCCC
Q psy16399 16 SIPRCKPLKYAYEKEIVMYAYYKKLVYF-STECIFAP 51 (165)
Q Consensus 16 ~v~~IRPL~~v~E~ei~~ya~~~~lp~~-~~~CP~~~ 51 (165)
....|+||..+++.||..+|+..|+|.. ...||.++
T Consensus 153 ~~~~i~Pl~~l~K~eV~~la~~~~ip~~i~~k~psa~ 189 (248)
T cd00553 153 GAADINPIGDLYKTQVRELARYLGVPESIIDKPPSAE 189 (248)
T ss_pred cccCccccCCCcHHHHHHHHHHHCchHHHhcCCCCcc
Confidence 4678999999999999999999999964 67888763
No 90
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=84.07 E-value=2.9 Score=33.47 Aligned_cols=40 Identities=18% Similarity=0.292 Sum_probs=33.5
Q ss_pred cccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEe
Q psy16399 121 KLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSI 164 (165)
Q Consensus 121 ~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~v 164 (165)
+++.++| |++|+||+=-+.-++.++...++. +..+++++-
T Consensus 82 g~i~~~D-vviaiS~SGeT~el~~~~~~aK~~---g~~liaiT~ 121 (202)
T COG0794 82 GMITPGD-VVIAISGSGETKELLNLAPKAKRL---GAKLIAITS 121 (202)
T ss_pred cCCCCCC-EEEEEeCCCcHHHHHHHHHHHHHc---CCcEEEEeC
Confidence 5677776 999999999999999999888764 788888874
No 91
>PRK10490 sensor protein KdpD; Provisional
Probab=82.99 E-value=5.1 Score=38.54 Aligned_cols=41 Identities=12% Similarity=0.170 Sum_probs=35.5
Q ss_pred cCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 123 FEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 123 ~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
+.-+++|+|++||+..|-.|..--.++..+ .+.++.++||+
T Consensus 247 ~~~~eriLV~v~~~~~~~~lIr~~~rlA~~--~~a~~~~l~V~ 287 (895)
T PRK10490 247 WHTRDAILLCIGHNTGSEKLVRTAARLAAR--LGSVWHAVYVE 287 (895)
T ss_pred CCcCCeEEEEECCCcchHHHHHHHHHHHHh--cCCCEEEEEEe
Confidence 356789999999999999999888888877 57889999985
No 92
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=80.91 E-value=5.5 Score=28.32 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=26.8
Q ss_pred CEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEE
Q psy16399 127 HRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLL 162 (165)
Q Consensus 127 ~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~ 162 (165)
.+|++..++|.-|..|+.=+....++.+.++++.++
T Consensus 4 kkIllvC~~G~sTSll~~km~~~~~~~gi~~~V~A~ 39 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEAF 39 (106)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 489999999999999996666655554445555554
No 93
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=79.13 E-value=2 Score=33.51 Aligned_cols=34 Identities=26% Similarity=0.147 Sum_probs=27.9
Q ss_pred CcceeeccCCCCHHHHHHHHHHcC---Cccee-CCCCC
Q psy16399 16 SIPRCKPLKYAYEKEIVMYAYYKK---LVYFS-TECIF 49 (165)
Q Consensus 16 ~v~~IRPL~~v~E~ei~~ya~~~~---lp~~~-~~CP~ 49 (165)
.+++++||...+..||+.+|+..| +|.-. ..|=.
T Consensus 149 ~~~i~~Pl~~~~K~eI~~la~~~g~~~~~~~~t~sC~~ 186 (201)
T TIGR00364 149 PVKIRAPLMDLTKAEIVQLADELGVLDLVIKLTYSCYA 186 (201)
T ss_pred CeEEEECCcCCCHHHHHHHHHHcCCccccHhhCCcCCC
Confidence 478999999999999999999999 76443 44544
No 94
>PTZ00285 glucosamine-6-phosphate isomerase; Provisional
Probab=77.48 E-value=7.7 Score=31.53 Aligned_cols=55 Identities=11% Similarity=0.038 Sum_probs=34.7
Q ss_pred hHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCc-cEEEEEeC
Q psy16399 110 ELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGL-DLVLLSID 165 (165)
Q Consensus 110 ~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~-~l~~~~vd 165 (165)
-..+.+.+++. .+..+....+|+|||..=.-+...|.+...+.+.+| ++.+..+|
T Consensus 17 a~~i~~~i~~~-~~~~~~~~~i~lsgG~tP~~~y~~L~~~~~~~~i~w~~v~if~~D 72 (253)
T PTZ00285 17 SNYIIKRINDF-KPTSDRPFVLGLPTGSTPLPTYQELIRAYREGRVSFSNVVTFNMD 72 (253)
T ss_pred HHHHHHHHHHH-hhhcCCCeEEEEcCCCCHHHHHHHHHHHHhhcCCchhHeEEECCc
Confidence 33444445441 134566899999999998888888886533222454 36666655
No 95
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=76.43 E-value=6.4 Score=27.35 Aligned_cols=35 Identities=14% Similarity=0.324 Sum_probs=26.2
Q ss_pred CEEEEEecCCccHHHHHHHHHHHhhhccCCccEEE
Q psy16399 127 HRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVL 161 (165)
Q Consensus 127 ~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~ 161 (165)
.+|+++..+|.-|+.++.-++++.++.+.++++.+
T Consensus 4 ~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a 38 (95)
T TIGR00853 4 TNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAA 38 (95)
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEE
Confidence 58999999999999988888877666434444444
No 96
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=76.27 E-value=11 Score=36.33 Aligned_cols=55 Identities=13% Similarity=0.200 Sum_probs=41.7
Q ss_pred hhHHHHHHHHhcc-------ccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 109 FELEIHHTIVTNK-------LFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 109 ~~~~v~~~i~~~~-------~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
.-++|...+..+. .+.-+++|+|++||+..|--+.---.++..+ .+.+++|+|||
T Consensus 224 ~AdrVd~~~~~~~~~~~~~~~~~~~e~ilvcI~~~~~~e~liR~a~RlA~~--~~a~~~av~v~ 285 (890)
T COG2205 224 TADRVDDQLRAYRRHKGIEGVWAARERILVCISGSPGSEKLIRRAARLASR--LHAKWTAVYVE 285 (890)
T ss_pred HHHHHhHHHHHHhhcccccccccccceEEEEECCCCchHHHHHHHHHHHHH--hCCCeEEEEEe
Confidence 4445555555432 2344589999999999999999988899877 57889999986
No 97
>KOG2303|consensus
Probab=76.22 E-value=3.5 Score=37.53 Aligned_cols=39 Identities=21% Similarity=0.369 Sum_probs=28.3
Q ss_pred cccccchhhhhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHH
Q psy16399 100 LCKECFFHAFELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVL 149 (165)
Q Consensus 100 iCk~C~~~~~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l 149 (165)
+.-+|.+|. .+++. ...-..+.+|||.||.+.+.+...+
T Consensus 334 ~GPacwlWd-------yLRRs----~~aGfflPLSGG~DSsatA~iV~sM 372 (706)
T KOG2303|consen 334 LGPACWLWD-------YLRRS----GQAGFFLPLSGGVDSSATAAIVYSM 372 (706)
T ss_pred cCchHHHHH-------HHHhc----CCCceEEecCCCccchHHHHHHHHH
Confidence 446677776 34553 3456999999999999888877655
No 98
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=75.95 E-value=6.5 Score=30.79 Aligned_cols=41 Identities=24% Similarity=0.382 Sum_probs=27.9
Q ss_pred CCCCEEEEEecCCccHHHHHHHHHHHhhhccCCc-cEEEEEeC
Q psy16399 124 EKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGL-DLVLLSID 165 (165)
Q Consensus 124 ~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~-~l~~~~vd 165 (165)
..+.+..||+|||.--..+...|.+..+. ..+| ++..+.+|
T Consensus 18 ~~~~~~~i~LsgGstp~~~y~~L~~~~~~-~i~w~~v~~~~~D 59 (199)
T PF01182_consen 18 AERGRAVIALSGGSTPKPLYQELAKLHKE-RIDWSRVHFFNVD 59 (199)
T ss_dssp HHCSSEEEEE--SCTHHHHHHHHHHHHHT-CSCGGGEEEEESE
T ss_pred HHCCCEEEEEcCCHHHHHHHHHHhhhccc-cCChhHeEEEeCc
Confidence 34567999999999999999999876432 3454 36666654
No 99
>KOG3425|consensus
Probab=75.02 E-value=16 Score=27.11 Aligned_cols=53 Identities=15% Similarity=0.087 Sum_probs=37.5
Q ss_pred hhhHHHHHHHHhccccCCCCEEEEEecCCcc----------HHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 108 AFELEIHHTIVTNKLFEKHHRIAIAASGGKD----------STVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 108 ~~~~~v~~~i~~~~~~~~~~~vlvavSGG~D----------S~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
...+.++++++++ .+|++|.|.++|++| =++..-++++--+. .+-++..+||+
T Consensus 10 ~g~e~~~~~~~~~---~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~--ap~~~~~v~v~ 72 (128)
T KOG3425|consen 10 PGYESFEETLKNV---ENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKH--APEDVHFVHVY 72 (128)
T ss_pred chHHHHHHHHHHH---hCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHh--CCCceEEEEEE
Confidence 4567788888884 678889999999994 46666677654333 35567777764
No 100
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=74.80 E-value=7.1 Score=27.77 Aligned_cols=33 Identities=12% Similarity=0.175 Sum_probs=24.9
Q ss_pred EEEEEecCCccHHHHHHHHHHHhhhccCCccEE
Q psy16399 128 RIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLV 160 (165)
Q Consensus 128 ~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~ 160 (165)
+|+++..||.-|+.++.-+.++.+..+.+.++.
T Consensus 3 kILlvCg~G~STSlla~k~k~~~~e~gi~~~i~ 35 (104)
T PRK09590 3 KALIICAAGMSSSMMAKKTTEYLKEQGKDIEVD 35 (104)
T ss_pred EEEEECCCchHHHHHHHHHHHHHHHCCCceEEE
Confidence 799999999999988888888766533333443
No 101
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=74.43 E-value=7.9 Score=30.76 Aligned_cols=49 Identities=20% Similarity=0.294 Sum_probs=32.0
Q ss_pred HHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCc-cEEEEEeC
Q psy16399 112 EIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGL-DLVLLSID 165 (165)
Q Consensus 112 ~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~-~l~~~~vd 165 (165)
.+...+++. +..+.++.+|+|||..=..+...|.+.. + .+| ++....+|
T Consensus 10 ~i~~~i~~~--i~~~~~~~l~lsGGstp~~~y~~L~~~~-~--i~w~~v~~f~~D 59 (219)
T cd01400 10 RIAEALAAA--IAKRGRFSLALSGGSTPKPLYELLAAAP-A--LDWSKVHVFLGD 59 (219)
T ss_pred HHHHHHHHH--HHhcCeEEEEECCCccHHHHHHHhcccc-C--CCCceEEEEEee
Confidence 344444442 3334689999999999998888877653 2 344 46666665
No 102
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=73.92 E-value=6.1 Score=27.40 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=25.5
Q ss_pred EEEEEecCCccHHHHHHHHHHHhhhccCCccEEEE
Q psy16399 128 RIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLL 162 (165)
Q Consensus 128 ~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~ 162 (165)
+|+++..+|.-|+.++.-+.++-++.+.++++.+.
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v~~~ 35 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGIDAEIEAV 35 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCceEEEEe
Confidence 58999999999998888888776654344444443
No 103
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=72.07 E-value=11 Score=24.99 Aligned_cols=34 Identities=12% Similarity=0.365 Sum_probs=25.6
Q ss_pred EEEEEecCCccHHHHH-HHHHHHhhhccCCccEEEEE
Q psy16399 128 RIAIAASGGKDSTVLA-HVLKVLNEKYQYGLDLVLLS 163 (165)
Q Consensus 128 ~vlvavSGG~DS~~Ll-~ll~~l~~~~~~~~~l~~~~ 163 (165)
||+++.++|.-|+.|+ .-+.+.-++ .+++....+
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~--~gi~~~~~~ 35 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKE--LGIEVEVSA 35 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHH--TTECEEEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHh--ccCceEEEE
Confidence 6899999999999998 788877555 355555444
No 104
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=71.88 E-value=5.7 Score=34.61 Aligned_cols=26 Identities=23% Similarity=0.193 Sum_probs=23.9
Q ss_pred CcceeeccCCCCHHHHHHHHHHcCCc
Q psy16399 16 SIPRCKPLKYAYEKEIVMYAYYKKLV 41 (165)
Q Consensus 16 ~v~~IRPL~~v~E~ei~~ya~~~~lp 41 (165)
.++++|||.-.+-.||+.+|+..|..
T Consensus 308 ~~~V~rPLig~~K~EI~~lAr~iG~~ 333 (394)
T PRK01565 308 NLPVLRPLIGMDKEEIIEIAKEIGTY 333 (394)
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCH
Confidence 47899999999999999999999983
No 105
>TIGR00502 nagB glucosamine-6-phosphate isomerase. The set of proteins recognized by this model includes a closely related pair from Bacillus subtilis, one of which is uncharacterized but included as a member of the orthologous set.
Probab=71.62 E-value=16 Score=29.76 Aligned_cols=54 Identities=13% Similarity=0.110 Sum_probs=34.8
Q ss_pred HHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCc-cEEEEEeC
Q psy16399 111 LEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGL-DLVLLSID 165 (165)
Q Consensus 111 ~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~-~l~~~~vd 165 (165)
+.+...+++.. ....+++.+|+|||..-..+...|.+.....+.+| ++.+..+|
T Consensus 18 ~~i~~~i~~~~-~~~~~~~~i~lsgGstP~~~y~~L~~~~~~~~i~w~~v~~f~~D 72 (259)
T TIGR00502 18 RHIANRINEFK-PTAARPFVLGLPTGGTPIGTYKQLIELHQAGKISFQNVTTFNMD 72 (259)
T ss_pred HHHHHHHHHhC-ccccCceEEEEcCCCChHHHHHHHHHHhhccCCchhHeEEEeCe
Confidence 34444555521 23356799999999999999998886533222455 36666655
No 106
>PLN02360 probable 6-phosphogluconolactonase
Probab=70.99 E-value=11 Score=30.98 Aligned_cols=42 Identities=19% Similarity=0.112 Sum_probs=22.9
Q ss_pred cCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCc-cEEEEEeC
Q psy16399 123 FEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGL-DLVLLSID 165 (165)
Q Consensus 123 ~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~-~l~~~~vd 165 (165)
+.+...+.+|+|||. ..-++..|.+...+-..+| ++++..+|
T Consensus 38 ~~~~~~~~lalsGGS-~~~~~~~L~~~~~~~~idW~~v~~f~~D 80 (268)
T PLN02360 38 VKERGVFAIALSGGS-LISFMGKLCEAPYNKTVDWAKWYIFWAD 80 (268)
T ss_pred HHhCCcEEEEECCCC-HHHHHHHHhccccccCCCCceEEEEeee
Confidence 345668999999995 3333333332211111344 36666665
No 107
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=69.78 E-value=5.9 Score=31.44 Aligned_cols=35 Identities=20% Similarity=0.156 Sum_probs=19.3
Q ss_pred CcceeeccCCCCHHHHHHHHHHcCCcce----eCCCCCC
Q psy16399 16 SIPRCKPLKYAYEKEIVMYAYYKKLVYF----STECIFA 50 (165)
Q Consensus 16 ~v~~IRPL~~v~E~ei~~ya~~~~lp~~----~~~CP~~ 50 (165)
..++.|||+-..-+||+..|+.-|.--+ ...|+.-
T Consensus 137 ~~pIlRPLig~dK~EIi~~Ar~Igtye~S~~~~~~C~~~ 175 (197)
T PF02568_consen 137 DLPILRPLIGFDKEEIIEIARKIGTYEISIRPYDCCSLF 175 (197)
T ss_dssp -S-EE-TTTT--HHHHHHHHHHTT-HHHHTS--------
T ss_pred CCceeCCcCCCCHHHHHHHHHHhCchhhhcCCCCcceee
Confidence 4689999999999999999999995432 1679864
No 108
>KOG0571|consensus
Probab=69.17 E-value=12 Score=33.56 Aligned_cols=39 Identities=15% Similarity=0.267 Sum_probs=26.0
Q ss_pred hhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHH
Q psy16399 109 FELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVL 149 (165)
Q Consensus 109 ~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l 149 (165)
+.+-+.+.+++.-| ....+-|=+|||.||+..+.+..+-
T Consensus 210 ~r~~~~~aV~KRLM--~d~p~GvLLSGGLDSSLvAsia~R~ 248 (543)
T KOG0571|consen 210 LRHTLEKAVRKRLM--TDVPFGVLLSGGLDSSLVASIAARE 248 (543)
T ss_pred HHHHHHHHHHHHhh--ccCceeEEeeCCchHHHHHHHHHHH
Confidence 33344445554322 3457889999999999888877643
No 109
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=68.34 E-value=5 Score=34.14 Aligned_cols=28 Identities=21% Similarity=0.175 Sum_probs=25.7
Q ss_pred CCcceeeccCCCCHHHHHHHHHHcCCcc
Q psy16399 15 DSIPRCKPLKYAYEKEIVMYAYYKKLVY 42 (165)
Q Consensus 15 ~~v~~IRPL~~v~E~ei~~ya~~~~lp~ 42 (165)
|...+|.||..-+|.||-.|...+|||+
T Consensus 188 g~~~RV~PL~~WTe~DVW~YI~~~~IP~ 215 (312)
T PRK12563 188 GESLRVFPLSNWTELDVWQYIAREKIPL 215 (312)
T ss_pred CceEEEecchhCCHHHHHHHHHHcCCCC
Confidence 3468999999999999999999999996
No 110
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=68.24 E-value=3.4 Score=35.69 Aligned_cols=25 Identities=24% Similarity=0.174 Sum_probs=23.3
Q ss_pred CcceeeccCCCCHHHHHHHHHHcCC
Q psy16399 16 SIPRCKPLKYAYEKEIVMYAYYKKL 40 (165)
Q Consensus 16 ~v~~IRPL~~v~E~ei~~ya~~~~l 40 (165)
.++++|||+..+..||+.+|+..|.
T Consensus 304 ~~~I~rPLi~~~K~EIi~~a~~iG~ 328 (371)
T TIGR00342 304 NTPILRPLIGMDKEEIIELAKEIGT 328 (371)
T ss_pred CCCEEeCCCCCCHHHHHHHHHHhCC
Confidence 4789999999999999999999996
No 111
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=65.74 E-value=48 Score=29.06 Aligned_cols=45 Identities=13% Similarity=0.158 Sum_probs=28.6
Q ss_pred HHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEE
Q psy16399 111 LEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLL 162 (165)
Q Consensus 111 ~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~ 162 (165)
.++...+.++.-.-.|.+++++. ||.++..++.++.++ |.++.++
T Consensus 285 ~~~~~~l~~~~~~L~Gkrv~i~~-g~~~~~~~~~~l~el------Gmevv~~ 329 (421)
T cd01976 285 PAMEAVIAKYRPRLEGKTVMLYV-GGLRPRHYIGAYEDL------GMEVVGT 329 (421)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEC-CCCcHHHHHHHHHHC------CCEEEEE
Confidence 34555666654445788888764 666777777777655 6666554
No 112
>PRK06696 uridine kinase; Validated
Probab=63.57 E-value=22 Score=28.03 Aligned_cols=39 Identities=28% Similarity=0.250 Sum_probs=25.3
Q ss_pred CCCEEEEEecCCccH--HHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 125 KHHRIAIAASGGKDS--TVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 125 ~~~~vlvavSGG~DS--~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
.+..++||+||+.-| +++++.|.+.-.. .+..+..++.|
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~--~g~~v~~~~~D 59 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKK--RGRPVIRASID 59 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEeccc
Confidence 567899999998877 7777777644222 24445554444
No 113
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=62.96 E-value=5.5 Score=34.51 Aligned_cols=27 Identities=15% Similarity=-0.061 Sum_probs=25.0
Q ss_pred CcceeeccCCCCHHHHHHHHHHcCCcc
Q psy16399 16 SIPRCKPLKYAYEKEIVMYAYYKKLVY 42 (165)
Q Consensus 16 ~v~~IRPL~~v~E~ei~~ya~~~~lp~ 42 (165)
+-++|.||..++++||+.||+.+|||.
T Consensus 151 l~~~ifPLg~~~K~evr~~A~~~gl~~ 177 (362)
T PRK14664 151 LRRCIFPLGNYTKQTVREYLREKGYEA 177 (362)
T ss_pred HhHHhccCccCCHHHHHHHHHHcCCCC
Confidence 447999999999999999999999987
No 114
>PRK09762 galactosamine-6-phosphate isomerase; Provisional
Probab=61.41 E-value=23 Score=28.47 Aligned_cols=40 Identities=18% Similarity=0.217 Sum_probs=28.5
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHhhhccCCc-cEEEEEeC
Q psy16399 126 HHRIAIAASGGKDSTVLAHVLKVLNEKYQYGL-DLVLLSID 165 (165)
Q Consensus 126 ~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~-~l~~~~vd 165 (165)
...+.+|+|||.-=..+...|.+.....+.+| ++.+.++|
T Consensus 27 ~~~~~l~lsgGstP~~~y~~L~~~~~~~~l~w~~v~~f~~D 67 (232)
T PRK09762 27 KPDAVICLATGATPLLTYHYLVEKIHQQQVDVSQLTFVKLD 67 (232)
T ss_pred CCCeEEEECCCCCHHHHHHHHHHHHhhcCCCHHHeEEEcCc
Confidence 45789999999999999888886532222455 36766665
No 115
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=61.17 E-value=21 Score=33.41 Aligned_cols=55 Identities=11% Similarity=0.153 Sum_probs=36.8
Q ss_pred hhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCc-cEEEEEeC
Q psy16399 109 FELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGL-DLVLLSID 165 (165)
Q Consensus 109 ~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~-~l~~~~vd 165 (165)
+-..+...|++. +..+..+.+|+|||..=.-+...|.+..++.+.+| ++....+|
T Consensus 43 vA~~I~~~I~~~--~~~~~~~~laLsGGsTP~~~Y~~L~~~~~~~~l~w~~V~~F~~D 98 (652)
T PRK02122 43 VAQEIATLIRER--QAEGKPCVLGLATGSSPIGVYAELIRMHREEGLSFKNVITFNLD 98 (652)
T ss_pred HHHHHHHHHHHH--HHhCCCEEEEEcCCcCHHHHHHHHHhhhhccCCCchheEEEeCe
Confidence 444555555553 45677899999999999999888887643323454 36665554
No 116
>PRK05439 pantothenate kinase; Provisional
Probab=60.55 E-value=19 Score=30.59 Aligned_cols=42 Identities=17% Similarity=0.249 Sum_probs=28.8
Q ss_pred CCCCEEEEEecCCccH--HHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 124 EKHHRIAIAASGGKDS--TVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 124 ~~~~~vlvavSGG~DS--~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
..+..++||++||.-| ++++..|..+-.+++.+.++.++++|
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~D 125 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTD 125 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecc
Confidence 3567899999999887 77777777653332234567777765
No 117
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=60.16 E-value=13 Score=25.22 Aligned_cols=35 Identities=6% Similarity=-0.036 Sum_probs=30.6
Q ss_pred CCCcchHHHHHHHHHHHHhCCchhhHHHHHhhhcc
Q psy16399 50 APNAYRGHARTFLKHLEKIRPASIMDIIHSESKYI 84 (165)
Q Consensus 50 ~~~~~R~~~k~~l~~le~~~P~~k~~i~~a~~~~~ 84 (165)
+.+|.+.++++++..++..-|.++..|++++++..
T Consensus 40 a~~T~~~kar~Lld~l~~kG~~A~~~F~~~L~e~~ 74 (82)
T cd08330 40 AEKTNQEKMRKLFSFVRSWGASCKDIFYQILREEE 74 (82)
T ss_pred cCCCcHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 45578899999999999999999999999997554
No 118
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=59.29 E-value=86 Score=27.97 Aligned_cols=44 Identities=11% Similarity=0.210 Sum_probs=28.2
Q ss_pred HHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEE
Q psy16399 112 EIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLL 162 (165)
Q Consensus 112 ~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~ 162 (165)
++...+++++-.-.|.+++|.. ||.++-.++.+|.++ |.++.++
T Consensus 321 ~~~~~ld~~~~~L~GKrv~i~~-g~~~~~~~~~~l~EL------Gmevv~~ 364 (466)
T TIGR01282 321 AVDAVIAKYRPRLEGKTVMLYV-GGLRPRHVIGAFEDL------GMEVIGT 364 (466)
T ss_pred HHHHHHHHHHHhcCCCEEEEEC-CCCcHHHHHHHHHHC------CCEEEEE
Confidence 4555566444344788877764 677888887777655 6666554
No 119
>KOG0081|consensus
Probab=59.11 E-value=41 Score=26.40 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHHHHcCCccee-CCCCCC
Q psy16399 24 KYAYEKEIVMYAYYKKLVYFS-TECIFA 50 (165)
Q Consensus 24 ~~v~E~ei~~ya~~~~lp~~~-~~CP~~ 50 (165)
.-+.|++.++.|...||||+. +.|.-.
T Consensus 140 R~Vs~~qa~~La~kyglPYfETSA~tg~ 167 (219)
T KOG0081|consen 140 RVVSEDQAAALADKYGLPYFETSACTGT 167 (219)
T ss_pred hhhhHHHHHHHHHHhCCCeeeeccccCc
Confidence 357899999999999999997 567643
No 120
>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium, the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate. 6PGL converts 6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the second step of the oxidative phase of the pentose phosphate pathway.
Probab=58.89 E-value=34 Score=25.95 Aligned_cols=39 Identities=15% Similarity=0.230 Sum_probs=27.1
Q ss_pred CCCEEEEEecCCccHHHHHHHHHHHhhhccCCc-cEEEEEeC
Q psy16399 125 KHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGL-DLVLLSID 165 (165)
Q Consensus 125 ~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~-~l~~~~vd 165 (165)
.++...||+|||.-=..+...|.+..... +| ++.++.+|
T Consensus 18 ~~~~~~i~lsgGsTp~~~y~~L~~~~~~~--~w~~v~~f~~D 57 (169)
T cd00458 18 EKDDMVIGLGTGSTPAYFYKLLGEKLKRG--EISDIVGFPTD 57 (169)
T ss_pred hCCCEEEEECCCccHHHHHHHHHhhhhhC--CccceEEEECc
Confidence 45678999999998888888887653321 23 46666655
No 121
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=58.02 E-value=17 Score=32.76 Aligned_cols=36 Identities=17% Similarity=0.339 Sum_probs=29.7
Q ss_pred CCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEE
Q psy16399 125 KHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLS 163 (165)
Q Consensus 125 ~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~ 163 (165)
.+.+|+++++||.-..=...++..|++. |.++.++.
T Consensus 69 ~~k~IllgVtGsIAayka~~lvr~L~k~---G~~V~Vvm 104 (475)
T PRK13982 69 ASKRVTLIIGGGIAAYKALDLIRRLKER---GAHVRCVL 104 (475)
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHHHhC---cCEEEEEE
Confidence 5789999999999999999999999754 67776653
No 122
>COG0236 AcpP Acyl carrier protein [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=57.91 E-value=9.6 Score=25.27 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=19.2
Q ss_pred cCCccHHHHHHHHHHHhhhccCCcc
Q psy16399 134 SGGKDSTVLAHVLKVLNEKYQYGLD 158 (165)
Q Consensus 134 SGG~DS~~Ll~ll~~l~~~~~~~~~ 158 (165)
-+|.||+-++-++..+.+. ++++
T Consensus 34 dlg~DSld~veLi~~lE~~--f~i~ 56 (80)
T COG0236 34 DLGLDSLDLVELVMALEEE--FGIE 56 (80)
T ss_pred ccCccHHHHHHHHHHHHHH--HCCc
Confidence 4899999999999999887 4544
No 123
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=57.12 E-value=32 Score=27.58 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=27.4
Q ss_pred CCCEEEEEecCCccHHHHHHHHHHHhhhccCCc-cEEEEEeC
Q psy16399 125 KHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGL-DLVLLSID 165 (165)
Q Consensus 125 ~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~-~l~~~~vd 165 (165)
....+.+|+|||.-=..+...|.+. + .+| ++++..+|
T Consensus 26 ~~~~~~lalsGGstp~~~y~~L~~~--~--i~w~~v~~f~~D 63 (233)
T TIGR01198 26 ERGQFSLALSGGRSPIALLEALAAQ--P--LDWSRIHLFLGD 63 (233)
T ss_pred hcCcEEEEECCCccHHHHHHHHhhC--C--CCcceEEEEEec
Confidence 3457999999999999998888864 2 344 46666665
No 124
>PF00550 PP-binding: Phosphopantetheine attachment site; InterPro: IPR006163 Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups []. The amino-terminal region of the ACP proteins is well defined and consists of alpha four helices arranged in a right-handed bundle held together by interhelical hydrophobic interactions. The Asp-Ser-Leu (DSL)motif is conserved in all of the ACP sequences, and the 4'-PP prosthetic group is covalently linked via a phosphodiester bond to the serine residue. The DSL sequence is present at the amino terminus of helix II, a domain of the protein referred to as the recognition helix and which is responsible for the interaction of ACPs with the enzymes of type II fatty acid synthesis [].; GO: 0048037 cofactor binding; PDB: 3EJB_E 3EJE_G 1L0I_A 2FHS_C 3EJD_E 2FAE_B 2FAD_B 2FAC_B 2K94_A 1ACP_A ....
Probab=56.93 E-value=7.6 Score=24.19 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=22.2
Q ss_pred cCCCCEEEEEecCCccHHHHHHHHHHHhhhcc
Q psy16399 123 FEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQ 154 (165)
Q Consensus 123 ~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~ 154 (165)
+.+.+.+ ++-|.||+.++.+...++++++
T Consensus 18 i~~~~~~---~~lG~DSl~~~~l~~~l~~~~g 46 (67)
T PF00550_consen 18 IDPDTDF---FDLGLDSLDAIELVSELEEEFG 46 (67)
T ss_dssp TSTTSBT---TTTTSSHHHHHHHHHHHHHHHT
T ss_pred CCCCCCH---HHhCCchHHHHHHHHHHHHHHc
Confidence 4555555 3678899999999999988743
No 125
>PRK05087 D-alanine--poly(phosphoribitol) ligase subunit 2; Validated
Probab=56.56 E-value=11 Score=25.19 Aligned_cols=49 Identities=12% Similarity=0.123 Sum_probs=30.9
Q ss_pred hhHHHHHHHHhccccCCC---CEEEEEecCCccHHHHHHHHHHHhhhccCCccE
Q psy16399 109 FELEIHHTIVTNKLFEKH---HRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDL 159 (165)
Q Consensus 109 ~~~~v~~~i~~~~~~~~~---~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l 159 (165)
++.++.+.|.+.--.... ..--+-=.|+.||+-.+.++..+.++ +|+++
T Consensus 3 i~~~I~~iL~~~~~~~~~~~~~d~~l~~~g~lDSl~~veli~~lE~~--fgi~i 54 (78)
T PRK05087 3 FKEQVLDILEELTGEDIVSENMDEDLFEEGILDSMGTVELLVELENR--FDIEV 54 (78)
T ss_pred HHHHHHHHHHHHhCCChhccCCccchhhccCcchHHHHHHHHHHHHH--hCCcc
Confidence 567777777664111111 11223347789999999999999887 45443
No 126
>cd01399 GlcN6P_deaminase GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or deamination. It is the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate (GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that is allosterically activated by GlcNAc6P.
Probab=56.41 E-value=30 Score=27.11 Aligned_cols=42 Identities=10% Similarity=0.163 Sum_probs=25.3
Q ss_pred CCCCEEEEEecCCccHHHHHHHHHHHhhhccCCc-cEEEEEeC
Q psy16399 124 EKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGL-DLVLLSID 165 (165)
Q Consensus 124 ~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~-~l~~~~vd 165 (165)
+.+....||+|||..=..++..|.....+.+.++ ++.++.+|
T Consensus 16 ~~~~~~~i~lsgG~T~~~~~~~l~~~~~~~~~~~~~v~v~~~d 58 (232)
T cd01399 16 REKPPAVLGLATGSTPLGVYEELIELHKEGGLSFSNVTTFNLD 58 (232)
T ss_pred HhCCCcEEEEcCCCCHHHHHHHHHHHHHhcCCcHHHeEEEeCc
Confidence 3345679999999887777766664422111232 46666554
No 127
>PRK12358 putative 6-phosphogluconolactonase; Provisional
Probab=55.28 E-value=29 Score=27.92 Aligned_cols=39 Identities=15% Similarity=0.191 Sum_probs=27.2
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHhhhccCCc-cEEEEEeC
Q psy16399 126 HHRIAIAASGGKDSTVLAHVLKVLNEKYQYGL-DLVLLSID 165 (165)
Q Consensus 126 ~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~-~l~~~~vd 165 (165)
..+..+|+|||..-..+...|.+..... ..| ++.++++|
T Consensus 27 ~~~~~l~lsgG~tp~~~y~~L~~~~~~~-~~w~~v~~f~~D 66 (239)
T PRK12358 27 TKRVNLAITAGSTPKGMYEYLITLVKGK-AWYDNVHYYNFD 66 (239)
T ss_pred CCCeEEEECCCCCHHHHHHHHHHHHhcC-CCHHHcEEEecc
Confidence 4579999999999999998888652221 223 46666655
No 128
>PRK08557 hypothetical protein; Provisional
Probab=54.66 E-value=33 Score=30.36 Aligned_cols=59 Identities=19% Similarity=0.262 Sum_probs=42.3
Q ss_pred ceeeccCCCCHHHHHHHHHHcCCccee----------C-CCCCCCCcchHHHHHHHHHHHHhCCchhhHHHHHhhhc
Q psy16399 18 PRCKPLKYAYEKEIVMYAYYKKLVYFS----------T-ECIFAPNAYRGHARTFLKHLEKIRPASIMDIIHSESKY 83 (165)
Q Consensus 18 ~~IRPL~~v~E~ei~~ya~~~~lp~~~----------~-~CP~~~~~~R~~~k~~l~~le~~~P~~k~~i~~a~~~~ 83 (165)
.++.|+..-++.||-.|...+|+|+-+ | .||++..+ -+..+.+.+|..-..+...+++.
T Consensus 314 ~~i~PI~~Wt~~dVW~YI~~~~lp~npLY~~Gy~riGC~~Cp~~~~~-------e~~~l~~~~Pe~~~k~~~~l~~~ 383 (417)
T PRK08557 314 TNVFPILDWNSLDIWSYIYLNDILYNPLYDKGFERIGCYLCPSALNS-------EFLRVKELYPELFNRWVKYLKKY 383 (417)
T ss_pred eeEEecccCCHHHHHHHHHHcCCCCCchhhCCCCCCCccCCCCccHH-------HHHHHHHHCHHHHHHHHHHHHHh
Confidence 478999999999999999999999732 2 38876432 23455777887766655555444
No 129
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=51.82 E-value=66 Score=25.29 Aligned_cols=48 Identities=10% Similarity=0.110 Sum_probs=31.0
Q ss_pred hHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEE
Q psy16399 110 ELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLS 163 (165)
Q Consensus 110 ~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~ 163 (165)
..-|.+.++.. ..++| +++++|++=-|--++..+...+++ |..+++++
T Consensus 96 ~~~f~~ql~~~--~~~gD-vli~iS~SG~s~~v~~a~~~Ak~~---G~~vI~IT 143 (196)
T PRK10886 96 DEVYAKQVRAL--GHAGD-VLLAISTRGNSRDIVKAVEAAVTR---DMTIVALT 143 (196)
T ss_pred HHHHHHHHHHc--CCCCC-EEEEEeCCCCCHHHHHHHHHHHHC---CCEEEEEe
Confidence 34455556653 45565 777777777777777778776654 67777665
No 130
>PRK07639 acyl carrier protein; Provisional
Probab=51.67 E-value=15 Score=25.02 Aligned_cols=47 Identities=11% Similarity=0.115 Sum_probs=29.6
Q ss_pred hhHHHHHHHHhccc------cCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccE
Q psy16399 109 FELEIHHTIVTNKL------FEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDL 159 (165)
Q Consensus 109 ~~~~v~~~i~~~~~------~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l 159 (165)
+..++.+.|.+.-- +.+..++. =.+|.||+.++.++..+..+ +|+++
T Consensus 6 i~~~i~~il~e~l~~~~~~~i~~d~~l~--edL~lDSld~velv~~lE~~--fgi~i 58 (86)
T PRK07639 6 LKNAVLKIMEEKLELKNVTHLEETMRLN--EDLYIDSVMMLQLIVYIEMD--VKLCV 58 (86)
T ss_pred HHHHHHHHHHHHhCCCccccCCCCCCcc--cccCCChHHHHHHHHHHHHH--HCCcc
Confidence 45666776666411 22222332 23699999999999999887 45443
No 131
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=51.37 E-value=25 Score=24.56 Aligned_cols=52 Identities=19% Similarity=0.260 Sum_probs=37.3
Q ss_pred HHHHHHHcCCccee-CCCCCCCCcchHHHHHHHHHHHHhCCchhhHHHHHhhh
Q psy16399 31 IVMYAYYKKLVYFS-TECIFAPNAYRGHARTFLKHLEKIRPASIMDIIHSESK 82 (165)
Q Consensus 31 i~~ya~~~~lp~~~-~~CP~~~~~~R~~~k~~l~~le~~~P~~k~~i~~a~~~ 82 (165)
|..|-..+|+-... ...-.+..|.+.+++.+|+-|..+-|.+...|..|+.+
T Consensus 26 v~~~L~~~gIlT~~~~e~I~a~~T~~~k~~~LLdiLp~RG~~AF~~F~~aL~e 78 (94)
T cd08327 26 VIQYLYQEGILTESHVEEIESQTTSRRKTMKLLDILPSRGPKAFHAFLDSLEE 78 (94)
T ss_pred HHHHHHhCCCCCHHHHHHHHccCChHHHHHHHHHHHHhhChhHHHHHHHHHHH
Confidence 44555555543221 11223466889999999999999999999999999976
No 132
>PRK00982 acpP acyl carrier protein; Provisional
Probab=50.81 E-value=14 Score=23.98 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=17.9
Q ss_pred cCCccHHHHHHHHHHHhhhc
Q psy16399 134 SGGKDSTVLAHVLKVLNEKY 153 (165)
Q Consensus 134 SGG~DS~~Ll~ll~~l~~~~ 153 (165)
..|.||+..+.++..+.+++
T Consensus 32 dlglDSl~~~~li~~le~~f 51 (78)
T PRK00982 32 DLGADSLDTVELVMALEEEF 51 (78)
T ss_pred hcCCCHHHHHHHHHHHHHHH
Confidence 67999999999999998874
No 133
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=50.50 E-value=55 Score=23.83 Aligned_cols=37 Identities=16% Similarity=0.306 Sum_probs=23.7
Q ss_pred cCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEE
Q psy16399 123 FEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLS 163 (165)
Q Consensus 123 ~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~ 163 (165)
+.+|| ++|++|.+=-|-..+..+..-+++ |..+++++
T Consensus 101 ~~~gD-vli~iS~SG~s~~vi~a~~~Ak~~---G~~vIalT 137 (138)
T PF13580_consen 101 IRPGD-VLIVISNSGNSPNVIEAAEEAKER---GMKVIALT 137 (138)
T ss_dssp --TT--EEEEEESSS-SHHHHHHHHHHHHT---T-EEEEEE
T ss_pred CCCCC-EEEEECCCCCCHHHHHHHHHHHHC---CCEEEEEe
Confidence 46777 888888877777777777766654 77777764
No 134
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=49.93 E-value=1.1e+02 Score=26.76 Aligned_cols=32 Identities=6% Similarity=0.022 Sum_probs=22.7
Q ss_pred HHHHHHHHcCCcceeCCCCCCCCcchHHHHHH
Q psy16399 30 EIVMYAYYKKLVYFSTECIFAPNAYRGHARTF 61 (165)
Q Consensus 30 ei~~ya~~~~lp~~~~~CP~~~~~~R~~~k~~ 61 (165)
.+..+-+..|+|++...-|++-......++++
T Consensus 224 ~~A~~L~~~GiP~~~~~~P~G~~~T~~~L~~l 255 (427)
T PRK02842 224 DTARALRERGAKVLTAPFPLGPEGTRAWLEAA 255 (427)
T ss_pred HHHHHHHHcCCccccCCCCcChHHHHHHHHHH
Confidence 35666688899999888898866555544444
No 135
>PRK00443 nagB glucosamine-6-phosphate deaminase; Provisional
Probab=49.82 E-value=61 Score=26.01 Aligned_cols=41 Identities=12% Similarity=0.190 Sum_probs=25.3
Q ss_pred CCCEEEEEecCCccHHHHHHHHHHHhhhccCCc-cEEEEEeC
Q psy16399 125 KHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGL-DLVLLSID 165 (165)
Q Consensus 125 ~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~-~l~~~~vd 165 (165)
.++..++|+|||..=..++..|.+...+.+.++ ++.++.+|
T Consensus 31 ~~~~~~iglsgG~T~~~~~~~L~~~~~~~~~~~~~v~v~~~D 72 (261)
T PRK00443 31 KERPFVLGLATGSSPLETYKALIELHKAGKVDFSRVTTFNLD 72 (261)
T ss_pred cCCceEEEecCCCCHHHHHHHHHHHhhhcCCchHHeEEEeCc
Confidence 345678999999997777777774311111233 46666554
No 136
>CHL00124 acpP acyl carrier protein; Validated
Probab=48.71 E-value=16 Score=24.07 Aligned_cols=19 Identities=26% Similarity=0.434 Sum_probs=17.3
Q ss_pred CCccHHHHHHHHHHHhhhc
Q psy16399 135 GGKDSTVLAHVLKVLNEKY 153 (165)
Q Consensus 135 GG~DS~~Ll~ll~~l~~~~ 153 (165)
.|.||+.++.++..+.+++
T Consensus 35 lg~DSl~~~eli~~le~~f 53 (82)
T CHL00124 35 LGADSLDVVELVMAIEEKF 53 (82)
T ss_pred cCCcHHHHHHHHHHHHHHH
Confidence 7999999999999998874
No 137
>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase. This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.
Probab=48.43 E-value=18 Score=28.08 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=24.6
Q ss_pred cceeeccCCCCHHHHHHHHHHcCCcce
Q psy16399 17 IPRCKPLKYAYEKEIVMYAYYKKLVYF 43 (165)
Q Consensus 17 v~~IRPL~~v~E~ei~~ya~~~~lp~~ 43 (165)
..++.|+..-++.||-.|...+|||+-
T Consensus 123 ~~~~~Pi~~Wt~~dVw~Yi~~~~lp~n 149 (191)
T TIGR02055 123 LVKINPLADWTSEDVWEYIADNELPYN 149 (191)
T ss_pred eEEEEecccCCHHHHHHHHHHcCCCCC
Confidence 567899999999999999999999874
No 138
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=48.29 E-value=27 Score=24.25 Aligned_cols=33 Identities=12% Similarity=0.141 Sum_probs=29.0
Q ss_pred CCcchHHHHHHHHHHHHhCCchhhHHHHHhhhcc
Q psy16399 51 PNAYRGHARTFLKHLEKIRPASIMDIIHSESKYI 84 (165)
Q Consensus 51 ~~~~R~~~k~~l~~le~~~P~~k~~i~~a~~~~~ 84 (165)
.++-+...+++|..|+ +-|+.--.|+.++++..
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~ 80 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETE 80 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcC
Confidence 3467899999999999 99999999999998765
No 139
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=48.20 E-value=56 Score=23.34 Aligned_cols=36 Identities=14% Similarity=0.248 Sum_probs=27.6
Q ss_pred CEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEE
Q psy16399 127 HRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLL 162 (165)
Q Consensus 127 ~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~ 162 (165)
.+|++..|+|..++.|..=..+.....+.+..+.|+
T Consensus 2 k~IlLvC~aGmSTSlLV~Km~~aA~~kg~~~~I~A~ 37 (102)
T COG1440 2 KKILLVCAAGMSTSLLVTKMKKAAESKGKDVTIEAY 37 (102)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHhCCCceEEEEe
Confidence 479999999999999999888776554445555554
No 140
>KOG0098|consensus
Probab=47.89 E-value=23 Score=28.41 Aligned_cols=27 Identities=19% Similarity=0.146 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHHcCCcceeCCCCCCC
Q psy16399 25 YAYEKEIVMYAYYKKLVYFSTECIFAP 51 (165)
Q Consensus 25 ~v~E~ei~~ya~~~~lp~~~~~CP~~~ 51 (165)
-|.++|-.+||+.+||++....|--+.
T Consensus 128 ~Vs~EEGeaFA~ehgLifmETSakt~~ 154 (216)
T KOG0098|consen 128 EVSKEEGEAFAREHGLIFMETSAKTAE 154 (216)
T ss_pred cccHHHHHHHHHHcCceeehhhhhhhh
Confidence 789999999999999999988877654
No 141
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=46.74 E-value=24 Score=21.77 Aligned_cols=28 Identities=14% Similarity=0.329 Sum_probs=20.6
Q ss_pred ceeCCCCCCCCcchHHHHHHHHHHHHhCCchhh
Q psy16399 42 YFSTECIFAPNAYRGHARTFLKHLEKIRPASIM 74 (165)
Q Consensus 42 ~~~~~CP~~~~~~R~~~k~~l~~le~~~P~~k~ 74 (165)
|....||+. ..++++++++...+|++..
T Consensus 6 f~~~~C~~C-----~~~~~~l~~l~~~~~~i~~ 33 (67)
T cd02973 6 FVSPTCPYC-----PDAVQAANRIAALNPNISA 33 (67)
T ss_pred EECCCCCCc-----HHHHHHHHHHHHhCCceEE
Confidence 345789998 4578888888887776544
No 142
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=45.22 E-value=58 Score=21.80 Aligned_cols=27 Identities=11% Similarity=0.215 Sum_probs=21.5
Q ss_pred cCCCCEEEEEecCCccHHHHHHHHHHH
Q psy16399 123 FEKHHRIAIAASGGKDSTVLAHVLKVL 149 (165)
Q Consensus 123 ~~~~~~vlvavSGG~DS~~Ll~ll~~l 149 (165)
+.+++.|++...+|..|..++..|.+.
T Consensus 58 ~~~~~~ivv~C~~G~rs~~aa~~L~~~ 84 (100)
T cd01523 58 LPDDQEVTVICAKEGSSQFVAELLAER 84 (100)
T ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHc
Confidence 456778999999999998888877654
No 143
>PRK07081 acyl carrier protein; Provisional
Probab=45.09 E-value=21 Score=24.01 Aligned_cols=18 Identities=11% Similarity=0.366 Sum_probs=16.2
Q ss_pred CccHHHHHHHHHHHhhhc
Q psy16399 136 GKDSTVLAHVLKVLNEKY 153 (165)
Q Consensus 136 G~DS~~Ll~ll~~l~~~~ 153 (165)
|.||+.++.++..+.+++
T Consensus 32 GlDSl~~v~li~~lE~~f 49 (83)
T PRK07081 32 GLSSLATVQLMLAIEDAF 49 (83)
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 699999999999998874
No 144
>PRK11175 universal stress protein UspE; Provisional
Probab=44.97 E-value=60 Score=26.31 Aligned_cols=39 Identities=15% Similarity=0.167 Sum_probs=26.4
Q ss_pred CCCCEEEEEecCCccH-------HHHHHHHHHHhhhccC-CccEEEEEe
Q psy16399 124 EKHHRIAIAASGGKDS-------TVLAHVLKVLNEKYQY-GLDLVLLSI 164 (165)
Q Consensus 124 ~~~~~vlvavSGG~DS-------~~Ll~ll~~l~~~~~~-~~~l~~~~v 164 (165)
.+..+|++|+.|+.++ ..++....++.+. . +.+++++||
T Consensus 150 ~~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~--~~~a~l~ll~v 196 (305)
T PRK11175 150 PEGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQ--LNHAEVHLVNA 196 (305)
T ss_pred CCCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhh--CcCCceEEEEE
Confidence 3457899999998753 3455555555544 3 668888886
No 145
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=44.90 E-value=69 Score=21.96 Aligned_cols=34 Identities=21% Similarity=0.387 Sum_probs=22.9
Q ss_pred EEEEEecCCccHHHH-HHHHHHHhhhccCCccEEEEE
Q psy16399 128 RIAIAASGGKDSTVL-AHVLKVLNEKYQYGLDLVLLS 163 (165)
Q Consensus 128 ~vlvavSGG~DS~~L-l~ll~~l~~~~~~~~~l~~~~ 163 (165)
+|+++...|.-|+.+ +.-++++-++ .++++.+.+
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~--~gi~~~v~~ 38 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQS--HNIPVELIQ 38 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHH--CCCeEEEEE
Confidence 699999999966666 5777766444 245444444
No 146
>PRK12449 acyl carrier protein; Provisional
Probab=44.64 E-value=21 Score=23.35 Aligned_cols=20 Identities=15% Similarity=0.237 Sum_probs=17.5
Q ss_pred cCCccHHHHHHHHHHHhhhc
Q psy16399 134 SGGKDSTVLAHVLKVLNEKY 153 (165)
Q Consensus 134 SGG~DS~~Ll~ll~~l~~~~ 153 (165)
.-|.||+.++.++..+.+++
T Consensus 34 dlg~DSl~~~~li~~lE~~f 53 (80)
T PRK12449 34 DLAVDSIELVEFIINVEDEF 53 (80)
T ss_pred HcCCcHHHHHHHHHHHHHHh
Confidence 56999999999999998773
No 147
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=44.29 E-value=82 Score=26.39 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=26.7
Q ss_pred CCCEEEEEecCCccH--HHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 125 KHHRIAIAASGGKDS--TVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 125 ~~~~vlvavSGG~DS--~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
.+...+||++||.-| ++++..|..+-.+++.+-++.++..|
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D 101 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTD 101 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecc
Confidence 456789999998877 77778777664443223345555544
No 148
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=43.90 E-value=20 Score=26.37 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=19.3
Q ss_pred cceeeccCCCCHHHHHHHHHHcCCcc
Q psy16399 17 IPRCKPLKYAYEKEIVMYAYYKKLVY 42 (165)
Q Consensus 17 v~~IRPL~~v~E~ei~~ya~~~~lp~ 42 (165)
..++.||..-+++||-.|...+|+|+
T Consensus 130 ~~~~~Pi~~wt~~dV~~yi~~~~l~~ 155 (174)
T PF01507_consen 130 IIRVYPIADWTEEDVWDYIKANGLPY 155 (174)
T ss_dssp EEEE-TTTT--HHHHHHHHHHHT--B
T ss_pred EEEEEehhhCCHHHHHHHHHHhcCCC
Confidence 56788999999999999999999985
No 149
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=43.40 E-value=1.4e+02 Score=23.83 Aligned_cols=43 Identities=14% Similarity=0.067 Sum_probs=24.6
Q ss_pred HHHHHhCCchhhHHHHHhhhccccCCCcccCCC--CCCccccccch
Q psy16399 63 KHLEKIRPASIMDIIHSESKYIEKNPANFNRPK--TGDTLCKECFF 106 (165)
Q Consensus 63 ~~le~~~P~~k~~i~~a~~~~~~~~~~~~~~c~--s~~~iCk~C~~ 106 (165)
-.|-+..+.--.+|.+++.+...... ....|. +....|..|.-
T Consensus 30 fhLL~~~~~~~~~la~al~~a~~~i~-~C~~C~~~te~d~C~ICsd 74 (198)
T COG0353 30 FHLLQRDREDVERLAKALLEAKENIK-HCSVCGNLTESDPCDICSD 74 (198)
T ss_pred HHHHccCHHHHHHHHHHHHHHHhcCc-cccccCCcCCCCcCcCcCC
Confidence 34445556666677777766663221 123344 66778877774
No 150
>COG0363 NagB 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]
Probab=42.58 E-value=96 Score=25.20 Aligned_cols=39 Identities=26% Similarity=0.371 Sum_probs=27.9
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHhhhccCCc-cEEEEEeC
Q psy16399 126 HHRIAIAASGGKDSTVLAHVLKVLNEKYQYGL-DLVLLSID 165 (165)
Q Consensus 126 ~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~-~l~~~~vd 165 (165)
..+..||+|||.==..+...|.+..+ .+.+| +++...+|
T Consensus 31 ~~~~~l~LsgGsTP~~~ye~L~~~~~-~~~~w~~v~~f~~D 70 (238)
T COG0363 31 RGRAVLALSGGSTPLALYEALVKLPQ-GQLDWSKVTIFNLD 70 (238)
T ss_pred cCcEEEEECCCCCHHHHHHHHHhhhc-cCCCchheEEEecc
Confidence 44899999999999999988887642 22454 36666554
No 151
>PRK05883 acyl carrier protein; Validated
Probab=42.42 E-value=23 Score=24.33 Aligned_cols=45 Identities=13% Similarity=0.197 Sum_probs=27.6
Q ss_pred hhhhHHHHHHHHhc-c----ccCCCCEEEEEecCCccHHHHHHHHHHHhhhc
Q psy16399 107 HAFELEIHHTIVTN-K----LFEKHHRIAIAASGGKDSTVLAHVLKVLNEKY 153 (165)
Q Consensus 107 ~~~~~~v~~~i~~~-~----~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~ 153 (165)
..+..++...|.+. + -+.+..+ +.=--|.||+.++.++..+.+++
T Consensus 13 ~~I~~~l~~iia~~l~v~~~~I~~d~~--l~~dlg~DSL~~v~lv~~lE~~f 62 (91)
T PRK05883 13 STVSATLLSILRDDLNVDLTRVTPDAR--LVDDVGLDSVAFAVGMVAIEERL 62 (91)
T ss_pred HHHHHHHHHHHHHHhCCChhhCCCCCc--hhhccCCChHHHHHHHHHHHHHH
Confidence 34666666666653 1 1222221 12246899999999999888773
No 152
>TIGR00517 acyl_carrier acyl carrier protein. S (Ser) at position 37 in the seed alignment, in the motif DSLD, is the phosphopantetheine attachment site.
Probab=42.39 E-value=24 Score=22.88 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=17.7
Q ss_pred cCCccHHHHHHHHHHHhhhc
Q psy16399 134 SGGKDSTVLAHVLKVLNEKY 153 (165)
Q Consensus 134 SGG~DS~~Ll~ll~~l~~~~ 153 (165)
..|.||+.++.++..+.+++
T Consensus 32 dlglDSl~~veli~~lE~~f 51 (77)
T TIGR00517 32 DLGADSLDTVELVMALEEEF 51 (77)
T ss_pred hcCCcHHHHHHHHHHHHHHH
Confidence 48999999999999998874
No 153
>cd08576 GDPD_like_SMaseD_PLD Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline
Probab=42.01 E-value=71 Score=26.59 Aligned_cols=89 Identities=17% Similarity=0.031 Sum_probs=61.4
Q ss_pred CCcchHHHHHHHHHHHHhC-CchhhHHHHHhhhccccCCCcccCCCCCCccccccchhhhhHHHHHHHHhccccCCCCEE
Q psy16399 51 PNAYRGHARTFLKHLEKIR-PASIMDIIHSESKYIEKNPANFNRPKTGDTLCKECFFHAFELEIHHTIVTNKLFEKHHRI 129 (165)
Q Consensus 51 ~~~~R~~~k~~l~~le~~~-P~~k~~i~~a~~~~~~~~~~~~~~c~s~~~iCk~C~~~~~~~~v~~~i~~~~~~~~~~~v 129 (165)
.-+.+..+.++|..+.+.. ||.+.+++--...++ ...+|..|-......-.++.++.+.--..+.++
T Consensus 50 ~c~~~~~f~~~l~~~r~~ttpg~~~~l~lv~lDlK------------~~~~~~~~~~~ag~~la~~ll~~~w~~~~~~ra 117 (265)
T cd08576 50 GCTAREMFDEILDYRRNGTTPGFRENLIFVWLDLK------------NPDLCGECSINAGRDLARKLLEPYWNGGSGARA 117 (265)
T ss_pred CCcHHHHHHHHHHHHHhcCCCCccceeEEEEEEcC------------CCCcCHHHHHHHHHHHHHHHHHHhhcCCCCeEE
Confidence 4488899999999999876 984444332222222 244678888888777777888877332255899
Q ss_pred EEEecCCc--cHHHHHHHHHHHhh
Q psy16399 130 AIAASGGK--DSTVLAHVLKVLNE 151 (165)
Q Consensus 130 lvavSGG~--DS~~Ll~ll~~l~~ 151 (165)
++.+|-.. ++-.+=-+-..|..
T Consensus 118 ~~~~s~~~~~~~~~~~~~~~~l~~ 141 (265)
T cd08576 118 LYGFSIPSITDSRFFKGIRDRLNS 141 (265)
T ss_pred EEEEEeccccchHHHHHHHHHHHh
Confidence 99999887 77776666666644
No 154
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=41.51 E-value=75 Score=27.53 Aligned_cols=47 Identities=13% Similarity=0.076 Sum_probs=35.6
Q ss_pred ccchhhhhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHh
Q psy16399 103 ECFFHAFELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLN 150 (165)
Q Consensus 103 ~C~~~~~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~ 150 (165)
..-...+.+.+.+.+++.. -.++..|+|=++||.=+|+...++....
T Consensus 48 ~dD~~~~y~~l~~~l~~~~-~~~~~~v~vDiTGGTK~Msaglalaa~~ 94 (379)
T PF09670_consen 48 PDDPLECYRKLREVLEKLR-DFPGHEVAVDITGGTKSMSAGLALAAIE 94 (379)
T ss_pred CCCHHHHHHHHHHHHHHHh-cCCCCeEEEECCCCHHHHHHHHHHHHHH
Confidence 3344556777888888862 2356789999999999999999888663
No 155
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=41.39 E-value=46 Score=22.83 Aligned_cols=54 Identities=19% Similarity=0.182 Sum_probs=38.6
Q ss_pred HHHHHHHHcCCccee-CCCCCCCCcchHHHHHHHHHHHHhCCchhhHHHHHhhhc
Q psy16399 30 EIVMYAYYKKLVYFS-TECIFAPNAYRGHARTFLKHLEKIRPASIMDIIHSESKY 83 (165)
Q Consensus 30 ei~~ya~~~~lp~~~-~~CP~~~~~~R~~~k~~l~~le~~~P~~k~~i~~a~~~~ 83 (165)
+|..|....|+-... ..--.+..+.+.+++.++.-|..+-|.+...|..|+++.
T Consensus 24 ~v~~~L~~~gvlt~~~~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~ 78 (90)
T cd08332 24 ELLIHLLQKDILTDSMAESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRET 78 (90)
T ss_pred HHHHHHHHcCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhc
Confidence 455666666653222 112223457889999999999999999999999999763
No 156
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=41.01 E-value=25 Score=28.22 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=25.4
Q ss_pred CcceeeccCCCCHHHHHHHHHHcCCcc
Q psy16399 16 SIPRCKPLKYAYEKEIVMYAYYKKLVY 42 (165)
Q Consensus 16 ~v~~IRPL~~v~E~ei~~ya~~~~lp~ 42 (165)
...+|-|+.+-++.||-.|...+|||+
T Consensus 158 ~~~kv~Pi~~Wt~~dVw~Yi~~~~lP~ 184 (226)
T TIGR02057 158 GILKVNPLIDWTFEQVYQYLDAHNVPY 184 (226)
T ss_pred CeEEEeehhhCCHHHHHHHHHHcCCCC
Confidence 477899999999999999999999997
No 157
>PRK05828 acyl carrier protein; Validated
Probab=40.26 E-value=27 Score=23.72 Aligned_cols=43 Identities=12% Similarity=0.117 Sum_probs=27.8
Q ss_pred hhhHHHHHHHHhccc------cCCCCEEEEEecCCccHHHHHHHHHHHhhhc
Q psy16399 108 AFELEIHHTIVTNKL------FEKHHRIAIAASGGKDSTVLAHVLKVLNEKY 153 (165)
Q Consensus 108 ~~~~~v~~~i~~~~~------~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~ 153 (165)
.+..++...+.+.++ +.....+ -.=|.||+-++.++..+.+++
T Consensus 5 eI~~~i~~ii~e~~~~~~~d~i~~~~~~---~dLg~DSLd~velv~~lE~~f 53 (84)
T PRK05828 5 EILLKIKEIAKKKNFAVTLDESNINKPY---RELKIDSLDMFSIIVSLESEF 53 (84)
T ss_pred HHHHHHHHHHHHhccCCCcccccCCCCH---HhcCCCHHHHHHHHHHHHHHH
Confidence 355677777775321 1111112 257999999999999998873
No 158
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=38.05 E-value=1.5e+02 Score=22.70 Aligned_cols=37 Identities=8% Similarity=0.070 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHHcCCcceeCCCCCCCCcchHHHHHHH
Q psy16399 25 YAYEKEIVMYAYYKKLVYFSTECIFAPNAYRGHARTFL 62 (165)
Q Consensus 25 ~v~E~ei~~ya~~~~lp~~~~~CP~~~~~~R~~~k~~l 62 (165)
.++++|+..||..+|++++.+.+-... ....-+.++.
T Consensus 127 ~v~~~~~~~~a~~~~~~~~e~SAk~g~-~V~~~F~~l~ 163 (189)
T cd04121 127 QVATEQAQAYAERNGMTFFEVSPLCNF-NITESFTELA 163 (189)
T ss_pred CCCHHHHHHHHHHcCCEEEEecCCCCC-CHHHHHHHHH
Confidence 367889999999999999987776553 3333344443
No 159
>PRK05350 acyl carrier protein; Provisional
Probab=37.20 E-value=33 Score=22.74 Aligned_cols=43 Identities=9% Similarity=-0.017 Sum_probs=27.2
Q ss_pred hhHHHHHHHHhc-c----ccCCCCEEEEEecCCccHHHHHHHHHHHhhhc
Q psy16399 109 FELEIHHTIVTN-K----LFEKHHRIAIAASGGKDSTVLAHVLKVLNEKY 153 (165)
Q Consensus 109 ~~~~v~~~i~~~-~----~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~ 153 (165)
+.+++...+.+. + -+.+...+. -.-|.||+-.+.++..+.+++
T Consensus 7 i~~~v~~ii~~~~~~~~~~i~~d~~l~--~dlg~DSld~veli~~lE~~f 54 (82)
T PRK05350 7 ILERLRAILVELFEIDPEDITPEANLY--EDLDLDSIDAVDLVVHLQKLT 54 (82)
T ss_pred HHHHHHHHHHHHhCCCHHHCCCCccch--hhcCCCHHHHHHHHHHHHHHH
Confidence 455566665543 1 122333332 246999999999999998873
No 160
>cd08810 CARD_BCL10 Caspase activation and recruitment domain of B-cell lymphoma 10. Caspase activation and recruitment domain (CARD) similar to that found in BCL10 (B-cell lymphoma 10). BCL10 and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1) are the integral components of CBM signalosomes. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. Both CARMA1 and CARD9 associate with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by asso
Probab=36.43 E-value=74 Score=21.80 Aligned_cols=55 Identities=20% Similarity=0.172 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCCccee-CCCCCCCCcchHHHHHHHHHHHHhCCchhhHHHHHhhhcc
Q psy16399 29 KEIVMYAYYKKLVYFS-TECIFAPNAYRGHARTFLKHLEKIRPASIMDIIHSESKYI 84 (165)
Q Consensus 29 ~ei~~ya~~~~lp~~~-~~CP~~~~~~R~~~k~~l~~le~~~P~~k~~i~~a~~~~~ 84 (165)
+++..|-...|+-... .+.-.+..+.+.+...+|+-|+ +.|.+-..|+.|++...
T Consensus 19 ~~l~d~L~s~~ILt~~d~EeI~~~~t~~~qa~~LLdiL~-rGp~Af~~F~esL~~~~ 74 (84)
T cd08810 19 DRHFDYLRSKRILTRDDCEEISCRTTSRKQAGKLLDILA-ENPKGLDALIESIRRER 74 (84)
T ss_pred HHHHHHHHHcCCCCHHHHHHHhccCCcHHHHHHHHHHHh-hCchHHHHHHHHHHHcc
Confidence 3466666666643222 2333446688999999999999 99999999999997755
No 161
>COG1158 Rho Transcription termination factor [Transcription]
Probab=36.29 E-value=30 Score=30.29 Aligned_cols=21 Identities=5% Similarity=0.034 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHhCCchhhH
Q psy16399 55 RGHARTFLKHLEKIRPASIMD 75 (165)
Q Consensus 55 R~~~k~~l~~le~~~P~~k~~ 75 (165)
-.-++++-+.+...+|...+-
T Consensus 187 T~lLq~IA~aIt~N~Pe~~Li 207 (422)
T COG1158 187 TTLLQNIANAITTNHPECELI 207 (422)
T ss_pred hHHHHHHHHHHhcCCCceEEE
Confidence 355677777777777776543
No 162
>COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=35.90 E-value=34 Score=22.98 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=16.3
Q ss_pred CCccHHHHHHHHHHHhhh
Q psy16399 135 GGKDSTVLAHVLKVLNEK 152 (165)
Q Consensus 135 GG~DS~~Ll~ll~~l~~~ 152 (165)
-|.||+=+..++.+++++
T Consensus 27 ~GLDSiR~M~L~~~wR~~ 44 (74)
T COG3433 27 YGLDSIRMMALLERWRKR 44 (74)
T ss_pred hchhHHHHHHHHHHHHHc
Confidence 489999999999999876
No 163
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=35.59 E-value=2e+02 Score=24.27 Aligned_cols=26 Identities=12% Similarity=0.084 Sum_probs=17.5
Q ss_pred HcCCcceeCCCCCCCCcchHHHHHHHH
Q psy16399 37 YKKLVYFSTECIFAPNAYRGHARTFLK 63 (165)
Q Consensus 37 ~~~lp~~~~~CP~~~~~~R~~~k~~l~ 63 (165)
..|+|++... ||+-.+.+..++++-+
T Consensus 222 ~~g~p~~~~~-p~G~~~t~~~l~~i~~ 247 (399)
T cd00316 222 KYGIPYILIN-PIGLEATDAFLRKLAE 247 (399)
T ss_pred HhCCCeEEeC-CcCHHHHHHHHHHHHH
Confidence 4599998877 9987665555544433
No 164
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=35.41 E-value=55 Score=22.22 Aligned_cols=56 Identities=18% Similarity=0.070 Sum_probs=39.3
Q ss_pred HHHHHHHHHcCCccee-CCCCCCCCcchHHHHHHHHHHHHhCCchhhHHHHHhhhcc
Q psy16399 29 KEIVMYAYYKKLVYFS-TECIFAPNAYRGHARTFLKHLEKIRPASIMDIIHSESKYI 84 (165)
Q Consensus 29 ~ei~~ya~~~~lp~~~-~~CP~~~~~~R~~~k~~l~~le~~~P~~k~~i~~a~~~~~ 84 (165)
++|..|-..+|+-... .+--.+..|.+.+.+.+|..|..+-|.+-..|..|+++..
T Consensus 19 ~~v~~~L~~~~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~ 75 (84)
T cd08326 19 KYLWDHLLSRGVFTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETG 75 (84)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 3456666666643221 1122234577899999999999999999999999987643
No 165
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=35.41 E-value=1.3e+02 Score=20.88 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=19.1
Q ss_pred EEEEEecCCccHHHHHHH-HHHHhhhccCCccEEEEEe
Q psy16399 128 RIAIAASGGKDSTVLAHV-LKVLNEKYQYGLDLVLLSI 164 (165)
Q Consensus 128 ~vlvavSGG~DS~~Ll~l-l~~l~~~~~~~~~l~~~~v 164 (165)
+|++|.=.|.-|+.++.. +.++-++++++.++...++
T Consensus 3 KIL~aCG~GvgSS~~ik~kve~~l~~~gi~~~~~~~~v 40 (93)
T COG3414 3 KILAACGNGVGSSTMIKMKVEEVLKELGIDVDVEQCAV 40 (93)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHcCCCceeeeEEe
Confidence 566666666666655553 3344333333334544444
No 166
>PRK00076 recR recombination protein RecR; Reviewed
Probab=35.31 E-value=2.3e+02 Score=22.52 Aligned_cols=91 Identities=15% Similarity=0.141 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhCCchhhHHHHHhhhccccCCCcccCCC--CCCccccccchhh-----------------hhH-------
Q psy16399 58 ARTFLKHLEKIRPASIMDIIHSESKYIEKNPANFNRPK--TGDTLCKECFFHA-----------------FEL------- 111 (165)
Q Consensus 58 ~k~~l~~le~~~P~~k~~i~~a~~~~~~~~~~~~~~c~--s~~~iCk~C~~~~-----------------~~~------- 111 (165)
..++...|-+..+....++.+++.+...... ....|. +...+|..|.-.. +|+
T Consensus 24 A~Rla~~ll~~~~~~~~~la~~i~~~~~~i~-~C~~C~~lse~~~C~IC~d~~Rd~~~icVVE~~~Dv~aiE~s~~y~G~ 102 (196)
T PRK00076 24 AQRLAFHLLQRDREDVLRLAQALEEAKEKIK-HCSVCGNLTEQDPCEICSDPRRDQSLICVVESPADVLAIERTGEYRGL 102 (196)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHcCC-cCCCCCCcCCCCcCCCCCCCCCCCCEEEEECCHHHHHHHHhhCcCceE
Confidence 3345555555667777888888877763321 124444 5566776665421 111
Q ss_pred -------------------HHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhh
Q psy16399 112 -------------------EIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNE 151 (165)
Q Consensus 112 -------------------~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~ 151 (165)
.+.+.+++- -..-+-|++|+|-..++=+.++.+.++-+
T Consensus 103 YhVL~G~ispl~gi~p~~l~i~~L~~ri--~~~v~EVIlA~~pt~EGe~Ta~yi~~~lk 159 (196)
T PRK00076 103 YHVLGGLLSPLDGIGPEDLNIDELLERL--DGEVKEVILATNPTVEGEATAHYIARLLK 159 (196)
T ss_pred EEEecCCcCCCCCCCccccCHHHHHHHH--hCCCCEEEEeCCCCchHHHHHHHHHHHHH
Confidence 111222221 01235799999999999998888887643
No 167
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=34.97 E-value=56 Score=22.36 Aligned_cols=54 Identities=6% Similarity=-0.008 Sum_probs=38.6
Q ss_pred HHHHHHHHcCCccee-CCCCCCCCcchHHHHHHHHHHHHhCCchhhHHHHHhhhc
Q psy16399 30 EIVMYAYYKKLVYFS-TECIFAPNAYRGHARTFLKHLEKIRPASIMDIIHSESKY 83 (165)
Q Consensus 30 ei~~ya~~~~lp~~~-~~CP~~~~~~R~~~k~~l~~le~~~P~~k~~i~~a~~~~ 83 (165)
+|..|-...|+-... .+.--+..+.+.+.+.+|+.|..+-|.+-..|.+|+++.
T Consensus 18 ~ild~L~~~gvlt~~~~e~I~~~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~ 72 (86)
T cd08323 18 YIMDHMISDGVLTLDEEEKVKSKATQKEKAVMLINMILTKDNHAYVSFYNALLHE 72 (86)
T ss_pred HHHHHHHhcCCCCHHHHHHHHcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 355555555543221 222334668899999999999999999999999998753
No 168
>TIGR01688 dltC D-alanine--poly(phosphoribitol) ligase, subunit 2. This protein is part of the teichoic acid operon in gram-positive organisms. Gram positive organisms incorporate teichoic acid in their cell walls, and in the fatty acid residues of the glycolipid component of the outer layer of the cytoplasmic membrane. This gene, dltC, encodes the alanyl carrier protein.
Probab=34.59 E-value=42 Score=22.36 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=18.6
Q ss_pred cCCccHHHHHHHHHHHhhhccCCccE
Q psy16399 134 SGGKDSTVLAHVLKVLNEKYQYGLDL 159 (165)
Q Consensus 134 SGG~DS~~Ll~ll~~l~~~~~~~~~l 159 (165)
+|-.||+..+.++..+.++ +++++
T Consensus 28 ~GllDS~~~v~Li~~lE~e--f~I~i 51 (73)
T TIGR01688 28 EGLLDSFGTVQLLLEIQNQ--FDIDV 51 (73)
T ss_pred ccchhHHHHHHHHHHHHHH--hCCcc
Confidence 4556999999999999887 45443
No 169
>PF09866 DUF2093: Uncharacterized protein conserved in bacteria (DUF2093); InterPro: IPR018661 This family of various hypothetical prokaryotic proteins has no known function.
Probab=34.15 E-value=38 Score=20.25 Aligned_cols=17 Identities=12% Similarity=0.077 Sum_probs=14.0
Q ss_pred cCCCCEEEEEecCCccH
Q psy16399 123 FEKHHRIAIAASGGKDS 139 (165)
Q Consensus 123 ~~~~~~vlvavSGG~DS 139 (165)
+.+|+-|+.|+||-+=.
T Consensus 2 l~pG~~V~CAVTg~~Ip 18 (42)
T PF09866_consen 2 LSPGSFVRCAVTGQPIP 18 (42)
T ss_pred ccCCCEEEEEeeCCccc
Confidence 57899999999997643
No 170
>PRK13820 argininosuccinate synthase; Provisional
Probab=33.94 E-value=49 Score=29.09 Aligned_cols=36 Identities=14% Similarity=0.067 Sum_probs=28.2
Q ss_pred cceeeccCC--CCHHHHHHHHHHcCCccee-CCCCCCCC
Q psy16399 17 IPRCKPLKY--AYEKEIVMYAYYKKLVYFS-TECIFAPN 52 (165)
Q Consensus 17 v~~IRPL~~--v~E~ei~~ya~~~~lp~~~-~~CP~~~~ 52 (165)
+..|-|+.. ++.+||+.||+.+|||+.. ..=||+.+
T Consensus 136 l~viaP~re~~ltK~ei~~ya~~~gip~~~~~~~~yS~d 174 (394)
T PRK13820 136 LEVIAPIRELNLTREWEIEYAKEKGIPVPVGKEKPWSID 174 (394)
T ss_pred CeeeCchhccCCCHHHHHHHHHHcCCCCCcCCCCCcccc
Confidence 467778877 6999999999999999864 34577633
No 171
>PLN02309 5'-adenylylsulfate reductase
Probab=33.52 E-value=47 Score=29.80 Aligned_cols=28 Identities=14% Similarity=0.129 Sum_probs=25.7
Q ss_pred cceeeccCCCCHHHHHHHHHHcCCccee
Q psy16399 17 IPRCKPLKYAYEKEIVMYAYYKKLVYFS 44 (165)
Q Consensus 17 v~~IRPL~~v~E~ei~~ya~~~~lp~~~ 44 (165)
+-+|-||..-+++||-.|...+++|+-+
T Consensus 249 ~lKvnPl~~Wt~~dVw~Yi~~~~lP~np 276 (457)
T PLN02309 249 LVKWNPLANVTGNEVWNFLRTMDVPVNS 276 (457)
T ss_pred eeEEcccccCCHHHHHHHHHHcCCCCCc
Confidence 6689999999999999999999999754
No 172
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=33.13 E-value=44 Score=23.58 Aligned_cols=26 Identities=8% Similarity=0.091 Sum_probs=19.1
Q ss_pred hhhhhHHHHHHHHhccccCCCCEEEE
Q psy16399 106 FHAFELEIHHTIVTNKLFEKHHRIAI 131 (165)
Q Consensus 106 ~~~~~~~v~~~i~~~~~~~~~~~vlv 131 (165)
...+.+...+.+.+.+++++||+|++
T Consensus 73 ~~~~~~~a~~~~~~~g~~~~gd~vVv 98 (117)
T PF02887_consen 73 TEELIAEALEYAKERGLLKPGDKVVV 98 (117)
T ss_dssp HHHHHHHHHHHHHHTTSS-TTSEEEE
T ss_pred HHHHHHHHHHHHHHcCCCCCCCEEEE
Confidence 34566677777888999999997765
No 173
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=32.99 E-value=96 Score=26.46 Aligned_cols=35 Identities=9% Similarity=0.043 Sum_probs=20.5
Q ss_pred HHHHHHH-cCCcceeCCCCCCCCcchHHHHHHHHHH
Q psy16399 31 IVMYAYY-KKLVYFSTECIFAPNAYRGHARTFLKHL 65 (165)
Q Consensus 31 i~~ya~~-~~lp~~~~~CP~~~~~~R~~~k~~l~~l 65 (165)
...+-+. .|+|++....||+-.+.+..++++-+.+
T Consensus 207 ~a~~L~e~~giP~~~~~~p~G~~~t~~~l~~i~~~l 242 (398)
T PF00148_consen 207 AAEWLEERFGIPYLYFPSPYGIEGTDAWLRAIAEAL 242 (398)
T ss_dssp HHHHHHHHHT-EEEEEC-SBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCeeeccccccHHHHHHHHHHHHHHh
Confidence 5555444 5999999889998655555444443333
No 174
>PRK09184 acyl carrier protein; Provisional
Probab=32.92 E-value=40 Score=23.15 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=19.1
Q ss_pred CCccHHHHHHHHHHHhhhccCCccE
Q psy16399 135 GGKDSTVLAHVLKVLNEKYQYGLDL 159 (165)
Q Consensus 135 GG~DS~~Ll~ll~~l~~~~~~~~~l 159 (165)
=|.||+-++.++..+.+. +|+++
T Consensus 40 LglDSld~velv~~lE~~--fgi~i 62 (89)
T PRK09184 40 LGLDSIDILEIALVISKR--YGFQL 62 (89)
T ss_pred CCCcHHHHHHHHHHHHHH--HCCcC
Confidence 589999999999999887 45544
No 175
>PF08497 Radical_SAM_N: Radical SAM N-terminal; InterPro: IPR013704 This domain tends to occur to the N terminus of PF04055 from PFAM radical SAM domain in hypothetical bacterial proteins. Proteins in this entry are radical SAM proteins, they catalyse diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].
Probab=32.39 E-value=26 Score=29.65 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=17.6
Q ss_pred CCEEEEEecCC-ccHHHHHHHHHH
Q psy16399 126 HHRIAIAASGG-KDSTVLAHVLKV 148 (165)
Q Consensus 126 ~~~vlvavSGG-~DS~~Ll~ll~~ 148 (165)
.-++-.+|||| .||||.=+--.+
T Consensus 68 ~PrLff~VsaGn~DSMV~hYTa~k 91 (302)
T PF08497_consen 68 RPRLFFGVSAGNMDSMVNHYTASK 91 (302)
T ss_pred CCcEEEEEccccHHHHHHhhcccc
Confidence 35788999988 999987665543
No 176
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=32.24 E-value=1.8e+02 Score=25.36 Aligned_cols=53 Identities=13% Similarity=0.274 Sum_probs=33.8
Q ss_pred hhhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEE
Q psy16399 108 AFELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLS 163 (165)
Q Consensus 108 ~~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~ 163 (165)
.+.+.++..|..- .+.|-+|++. +||.|-..++..+.++.++.+.++++.+|+
T Consensus 55 ~~~~~L~~~L~~~--~~~gIkvI~N-aGg~np~~~a~~v~eia~e~Gl~lkvA~V~ 107 (362)
T PF07287_consen 55 DFVRDLRPLLPAA--AEKGIKVITN-AGGLNPAGCADIVREIARELGLSLKVAVVY 107 (362)
T ss_pred HHHHHHHHHHHHH--HhCCCCEEEe-CCCCCHHHHHHHHHHHHHhcCCCeeEEEEE
Confidence 3444555444442 2345567665 899999999999998877754455555544
No 177
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=31.84 E-value=1.3e+02 Score=27.77 Aligned_cols=48 Identities=23% Similarity=0.211 Sum_probs=32.5
Q ss_pred hhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEe
Q psy16399 109 FELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSI 164 (165)
Q Consensus 109 ~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~v 164 (165)
-.+++.++++++++ + .+-+-||-||+..++.|.++..+ .+.++.++.|
T Consensus 154 ~~~~i~~~l~~~~I----d--~LviIGGddS~~~A~~Lae~~~~--~g~~i~VIGV 201 (550)
T cd00765 154 QFKQAEETAKKLDL----D--ALVVIGGDDSNTNAALLAENFRS--KGLKTRVIGV 201 (550)
T ss_pred HHHHHHHHHHHcCC----C--EEEEeCCchHHHHHHHHHHHHHh--cCCCceEEEE
Confidence 34567777888765 2 23467999999999999987554 2444555443
No 178
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=31.80 E-value=1.2e+02 Score=21.47 Aligned_cols=27 Identities=33% Similarity=0.523 Sum_probs=21.2
Q ss_pred cCCCCEEEEEe-cCCccHHHHHHHHHHH
Q psy16399 123 FEKHHRIAIAA-SGGKDSTVLAHVLKVL 149 (165)
Q Consensus 123 ~~~~~~vlvav-SGG~DS~~Ll~ll~~l 149 (165)
+.++++|+|.. +||.-|..+..+|..+
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a~~~L~~~ 110 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSLAWLLESL 110 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHHHHHHHHc
Confidence 46677888888 5899999888887654
No 179
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=31.74 E-value=49 Score=22.39 Aligned_cols=32 Identities=22% Similarity=0.394 Sum_probs=23.2
Q ss_pred ceeCCCCCCCCcchHHHHHHHHHHHHhCCchhhHHHH
Q psy16399 42 YFSTECIFAPNAYRGHARTFLKHLEKIRPASIMDIIH 78 (165)
Q Consensus 42 ~~~~~CP~~~~~~R~~~k~~l~~le~~~P~~k~~i~~ 78 (165)
|....||+.. .++++++++.+.+|+++...+.
T Consensus 19 F~~~~C~~C~-----~~~~~~~~l~~~~~~i~~~~vd 50 (89)
T cd03026 19 YVSLSCHNCP-----DVVQALNLMAVLNPNIEHEMID 50 (89)
T ss_pred EECCCCCCcH-----HHHHHHHHHHHHCCCceEEEEE
Confidence 3457899986 4677889999999976655543
No 180
>PF13660 DUF4147: Domain of unknown function (DUF4147); PDB: 1X3L_A 2B8N_A.
Probab=31.66 E-value=45 Score=27.27 Aligned_cols=28 Identities=14% Similarity=0.211 Sum_probs=18.4
Q ss_pred HHHHHHHHhccccCCCCEEEEEecCCccHHH
Q psy16399 111 LEIHHTIVTNKLFEKHHRIAIAASGGKDSTV 141 (165)
Q Consensus 111 ~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~ 141 (165)
+++.+.+++ ..++|-+++-+|||-.|+.
T Consensus 104 ~~il~~~~~---~~~~dlvl~LiSGGgSALl 131 (238)
T PF13660_consen 104 RRILELARE---LTEDDLVLVLISGGGSALL 131 (238)
T ss_dssp HHHHHHHCC-----TTSEEEEEE-TTHHHHS
T ss_pred HHHHHHHhc---CCCCCeEEEEecCChHHhh
Confidence 344555554 5789999999999987754
No 181
>PRK08172 putative acyl carrier protein IacP; Validated
Probab=31.54 E-value=45 Score=22.38 Aligned_cols=44 Identities=16% Similarity=0.177 Sum_probs=27.1
Q ss_pred hhhHHHHHHHHhccc-----cCCCCEEEEEecCCccHHHHHHHHHHHhhhc
Q psy16399 108 AFELEIHHTIVTNKL-----FEKHHRIAIAASGGKDSTVLAHVLKVLNEKY 153 (165)
Q Consensus 108 ~~~~~v~~~i~~~~~-----~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~ 153 (165)
.+..++.+.+.+.-- +.+.. -+.=.-|.||+-++.++..+.+.+
T Consensus 4 ~i~~~v~~iiae~l~v~~~~i~~d~--~l~~dL~~DSld~v~lv~~lEe~F 52 (82)
T PRK08172 4 DIEARVKKVITSCIAVDVDSINGQT--HLVEDLYADSLDLIDIVFGLSEEF 52 (82)
T ss_pred cHHHHHHHHHHHHHCCCHHHCCCCc--chhhhcCCCHHHHHHHHHHHHHHH
Confidence 355666666655311 12222 222346799999999999998773
No 182
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=31.42 E-value=1.3e+02 Score=27.67 Aligned_cols=47 Identities=26% Similarity=0.217 Sum_probs=32.2
Q ss_pred hhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEE
Q psy16399 109 FELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLS 163 (165)
Q Consensus 109 ~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~ 163 (165)
-.+++.++++++++ + .+-+-||-||+.-++.|.++-.+. +.++.++.
T Consensus 149 ~~~~~~~~l~~~~I----d--~LviIGGdgS~~~A~~Lae~~~~~--g~~i~VIG 195 (539)
T TIGR02477 149 QFAKALTTAKKLKL----D--GLVIIGGDDSNTNAALLAEYFAKH--GLKTQVIG 195 (539)
T ss_pred HHHHHHHHHHHcCC----C--EEEEeCCchHHHHHHHHHHHHHhc--CCCceEEE
Confidence 44567777888765 2 345679999999999999875542 44454444
No 183
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=31.32 E-value=68 Score=22.20 Aligned_cols=34 Identities=12% Similarity=-0.076 Sum_probs=29.1
Q ss_pred CCcchHHHHHHHHHHHHhCCchhhHHHHHhhhcc
Q psy16399 51 PNAYRGHARTFLKHLEKIRPASIMDIIHSESKYI 84 (165)
Q Consensus 51 ~~~~R~~~k~~l~~le~~~P~~k~~i~~a~~~~~ 84 (165)
..+.+.+++++|..+..+-|.+...|+.++.+..
T Consensus 49 ~~t~~~qAr~Lld~l~~KG~~A~~~F~~~L~e~~ 82 (94)
T cd08329 49 KTQTPLQARELIDTVLVKGNAAAEVFRNCLKKND 82 (94)
T ss_pred CCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 4455799999999999999999999999986554
No 184
>smart00114 CARD Caspase recruitment domain. Motif contained in proteins involved in apoptotic signalling. Mediates homodimerisation. Structure consists of six antiparallel helices arranged in a topology homologue to the DEATH and the DED domain.
Probab=30.77 E-value=70 Score=21.35 Aligned_cols=54 Identities=17% Similarity=0.158 Sum_probs=37.5
Q ss_pred HHHHHHHHcCCcceeC-CCCCCCCcchHHHHHHHHHHHHhCCchhhHHHHHhhhc
Q psy16399 30 EIVMYAYYKKLVYFST-ECIFAPNAYRGHARTFLKHLEKIRPASIMDIIHSESKY 83 (165)
Q Consensus 30 ei~~ya~~~~lp~~~~-~CP~~~~~~R~~~k~~l~~le~~~P~~k~~i~~a~~~~ 83 (165)
++..|-..+|+-.... +---+..+.+...+.++..+..+-|.+...|+.++.+.
T Consensus 24 ~vld~L~~~~Vlt~~e~e~i~~~~t~~~~~~~Lld~l~~kG~~Af~~F~~~L~~~ 78 (88)
T smart00114 24 GLLDYLVEKNVLTEKEIEAIKAATTKLRDKRELVDSLQKRGSQAFDTFLDSLQET 78 (88)
T ss_pred HHHHHHHHcCCCCHHHHHHHHccCChHHHHHHHHHHHHhHhHHHHHHHHHHHHHc
Confidence 4556666666433221 11223456677779999999999999999999999754
No 185
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=30.77 E-value=1.3e+02 Score=19.51 Aligned_cols=27 Identities=19% Similarity=0.363 Sum_probs=23.0
Q ss_pred cCCCCEEEEEecCCccHHHHHHHHHHH
Q psy16399 123 FEKHHRIAIAASGGKDSTVLAHVLKVL 149 (165)
Q Consensus 123 ~~~~~~vlvavSGG~DS~~Ll~ll~~l 149 (165)
+++++.|++..++|..|...+..|.++
T Consensus 53 ~~~~~~ivv~c~~g~~s~~a~~~l~~~ 79 (96)
T cd01444 53 LDRDRPVVVYCYHGNSSAQLAQALREA 79 (96)
T ss_pred cCCCCCEEEEeCCCChHHHHHHHHHHc
Confidence 567788999999999999888888765
No 186
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=30.55 E-value=56 Score=26.45 Aligned_cols=26 Identities=27% Similarity=0.188 Sum_probs=24.8
Q ss_pred cceeeccCCCCHHHHHHHHHHcC-Ccc
Q psy16399 17 IPRCKPLKYAYEKEIVMYAYYKK-LVY 42 (165)
Q Consensus 17 v~~IRPL~~v~E~ei~~ya~~~~-lp~ 42 (165)
+.+.-||...+-.||+..+...| +|+
T Consensus 154 i~I~aPl~~lsK~eI~~l~~~lg~v~~ 180 (231)
T PRK11106 154 IRFETPLMWLNKAETWALADYYGQLDL 180 (231)
T ss_pred cEEEecCCCCCHHHHHHHHHHcCCccc
Confidence 88999999999999999999999 887
No 187
>COG3908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.39 E-value=36 Score=22.64 Aligned_cols=19 Identities=11% Similarity=0.086 Sum_probs=16.2
Q ss_pred hccccCCCCEEEEEecCCc
Q psy16399 119 TNKLFEKHHRIAIAASGGK 137 (165)
Q Consensus 119 ~~~~~~~~~~vlvavSGG~ 137 (165)
++.++.+|+.|+.||+|-.
T Consensus 21 df~vv~~GsfV~CAVtgk~ 39 (77)
T COG3908 21 DFQVVSPGSFVLCAVTGKP 39 (77)
T ss_pred ceEEEcCCcEEEEEecCCc
Confidence 4677889999999999965
No 188
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=30.38 E-value=2.2e+02 Score=21.95 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=25.6
Q ss_pred cCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEE
Q psy16399 123 FEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLS 163 (165)
Q Consensus 123 ~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~ 163 (165)
..++| +++++|.+=.|--+...+...+++ |.++++++
T Consensus 109 ~~~~D-v~I~iS~SG~t~~~i~~~~~ak~~---g~~iI~iT 145 (192)
T PRK00414 109 GREGD-VLLGISTSGNSGNIIKAIEAARAK---GMKVITLT 145 (192)
T ss_pred CCCCC-EEEEEeCCCCCHHHHHHHHHHHHC---CCeEEEEe
Confidence 34444 777787777777777777777654 67777765
No 189
>PRK13938 phosphoheptose isomerase; Provisional
Probab=29.99 E-value=2.4e+02 Score=22.12 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=29.6
Q ss_pred HHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEE
Q psy16399 113 IHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLS 163 (165)
Q Consensus 113 v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~ 163 (165)
+.+.+.. ...++| +++++|.+--|--++..+...+++ |..+++++
T Consensus 103 ~~~~~~~--~~~~~D-llI~iS~SG~t~~vi~a~~~Ak~~---G~~vI~iT 147 (196)
T PRK13938 103 FARALEG--SARPGD-TLFAISTSGNSMSVLRAAKTAREL---GVTVVAMT 147 (196)
T ss_pred HHHHHHh--cCCCCC-EEEEEcCCCCCHHHHHHHHHHHHC---CCEEEEEe
Confidence 3344443 245555 788888777777788888777654 67777665
No 190
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=29.36 E-value=1.5e+02 Score=27.62 Aligned_cols=46 Identities=17% Similarity=0.028 Sum_probs=30.9
Q ss_pred hhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEE
Q psy16399 109 FELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLV 160 (165)
Q Consensus 109 ~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~ 160 (165)
-.+++.++++++++ + .+-+=||-||+.-++.|.++.++.+.++.++
T Consensus 161 ~~~~i~e~l~~l~I----d--~LvvIGGddS~~~A~~Lae~~~~~~~~i~VI 206 (610)
T PLN03028 161 QVNAALAACEALKL----D--GLVIIGGVTSNTDAAQLAETFAEAKCKTKVV 206 (610)
T ss_pred HHHHHHHHHHHcCC----C--EEEEeCCchHHHHHHHHHHHHHHcCCCceEE
Confidence 34667778888765 2 3445699999999999998754432344443
No 191
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=29.32 E-value=54 Score=28.77 Aligned_cols=33 Identities=24% Similarity=0.247 Sum_probs=28.0
Q ss_pred CcceeeccCCCCHHHHHHHHHHcCCccee-----CCCC
Q psy16399 16 SIPRCKPLKYAYEKEIVMYAYYKKLVYFS-----TECI 48 (165)
Q Consensus 16 ~v~~IRPL~~v~E~ei~~ya~~~~lp~~~-----~~CP 48 (165)
..+++|||+-...+||+..|+.-|-.-++ ..|+
T Consensus 308 ~~pIlRPLI~~DK~eIi~~Ar~IgT~eiSi~p~e~cc~ 345 (383)
T COG0301 308 NTPVLRPLIGLDKEEIIEIARRIGTYEISIEPPEDCCV 345 (383)
T ss_pred CCceeccccCCCHHHHHHHHHHhCChhhhccCCCCCcC
Confidence 47999999999999999999999876544 4577
No 192
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=29.30 E-value=2.6e+02 Score=21.91 Aligned_cols=49 Identities=14% Similarity=0.281 Sum_probs=34.3
Q ss_pred hhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEE
Q psy16399 109 FELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLS 163 (165)
Q Consensus 109 ~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~ 163 (165)
.+.-|.+.++..+ ++|| |++|+|..--|.-.+..+..-+++ +...++++
T Consensus 95 yd~vFsRqveA~g--~~GD-vLigISTSGNS~nVl~Ai~~Ak~~---gm~vI~lt 143 (176)
T COG0279 95 YDEVFSRQVEALG--QPGD-VLIGISTSGNSKNVLKAIEAAKEK---GMTVIALT 143 (176)
T ss_pred HHHHHHHHHHhcC--CCCC-EEEEEeCCCCCHHHHHHHHHHHHc---CCEEEEEe
Confidence 4455666777753 3666 999999888998888888877654 56555543
No 193
>PRK13936 phosphoheptose isomerase; Provisional
Probab=29.25 E-value=1.4e+02 Score=23.20 Aligned_cols=36 Identities=17% Similarity=0.321 Sum_probs=24.0
Q ss_pred CCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEE
Q psy16399 124 EKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLS 163 (165)
Q Consensus 124 ~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~ 163 (165)
.++| +++++|.+--|-.++.++...+++ |..+++++
T Consensus 110 ~~~D-v~i~iS~sG~t~~~~~~~~~ak~~---g~~iI~IT 145 (197)
T PRK13936 110 QPGD-VLLAISTSGNSANVIQAIQAAHER---EMHVVALT 145 (197)
T ss_pred CCCC-EEEEEeCCCCcHHHHHHHHHHHHC---CCeEEEEE
Confidence 4555 777777766677777777766554 66777664
No 194
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=29.02 E-value=1.6e+02 Score=27.25 Aligned_cols=48 Identities=19% Similarity=0.151 Sum_probs=32.6
Q ss_pred hhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEe
Q psy16399 109 FELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSI 164 (165)
Q Consensus 109 ~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~v 164 (165)
-.+++.++++++++ + .+-+-||-||+.-++.|.++-.+ .+.++.++.|
T Consensus 178 ~~~~~~~~l~~l~I----d--~LViIGGddS~~~A~~Lae~~~~--~g~~i~VIGV 225 (568)
T PLN02251 178 QFKQAEETATKLDL----D--GLVVIGGDDSNTNACLLAEYFRA--KNLKTRVIGC 225 (568)
T ss_pred HHHHHHHHHHHcCC----C--EEEEeCCchHHHHHHHHHHHHHh--cCCCeeEEEe
Confidence 34667777888765 2 34456999999999999987544 2444555543
No 195
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=29.00 E-value=92 Score=21.21 Aligned_cols=32 Identities=16% Similarity=0.195 Sum_probs=28.2
Q ss_pred cchHHHHHHHHHHHH-hCCchhhHHHHHhhhcc
Q psy16399 53 AYRGHARTFLKHLEK-IRPASIMDIIHSESKYI 84 (165)
Q Consensus 53 ~~R~~~k~~l~~le~-~~P~~k~~i~~a~~~~~ 84 (165)
+.+..+..+|..|++ +.||.-..|+.|+++..
T Consensus 48 g~~~aa~~Ll~~L~~~r~~~wf~~Fl~AL~~~g 80 (88)
T cd08812 48 GNIAAAEELLDRLERCDKPGWFQAFLDALRRTG 80 (88)
T ss_pred ChHHHHHHHHHHHHHhccCCcHHHHHHHHHHcC
Confidence 567889999999999 89999999999998755
No 196
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=28.90 E-value=54 Score=25.59 Aligned_cols=27 Identities=26% Similarity=0.247 Sum_probs=25.0
Q ss_pred CcceeeccCCCCHHHHHHHHHHcCCcc
Q psy16399 16 SIPRCKPLKYAYEKEIVMYAYYKKLVY 42 (165)
Q Consensus 16 ~v~~IRPL~~v~E~ei~~ya~~~~lp~ 42 (165)
...++-|+..-+++||-.|...+|+|+
T Consensus 143 ~~~~v~PI~dWt~~dVw~Yi~~~~lp~ 169 (212)
T TIGR00434 143 GILKVLPLIDWTWKDVYQYIDAHNLPY 169 (212)
T ss_pred CcEEEeehhhCCHHHHHHHHHHcCCCC
Confidence 467899999999999999999999996
No 197
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=28.82 E-value=2.4e+02 Score=23.83 Aligned_cols=43 Identities=16% Similarity=0.298 Sum_probs=27.6
Q ss_pred cCCCCEEEEEecCCccH--HHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 123 FEKHHRIAIAASGGKDS--TVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 123 ~~~~~~vlvavSGG~DS--~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
.....+.+||++|++-+ ++++.+|+.+-.+++....+..++.|
T Consensus 77 ~~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmD 121 (283)
T COG1072 77 NNQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMD 121 (283)
T ss_pred CCCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEecc
Confidence 34566899999997654 77777777765555433335555443
No 198
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=28.74 E-value=1.8e+02 Score=24.48 Aligned_cols=33 Identities=39% Similarity=0.576 Sum_probs=24.0
Q ss_pred EEEEEecCCc-cHHHHHHHHHH-HhhhccCCccEEEEE
Q psy16399 128 RIAIAASGGK-DSTVLAHVLKV-LNEKYQYGLDLVLLS 163 (165)
Q Consensus 128 ~vlvavSGG~-DS~~Ll~ll~~-l~~~~~~~~~l~~~~ 163 (165)
.|.||+.||+ =|++++..|.+ ++++ ++.+.+-|
T Consensus 244 tIaiGCTGG~HRSV~iae~La~~L~~~---~~~v~v~H 278 (284)
T PF03668_consen 244 TIAIGCTGGQHRSVAIAERLAERLREK---GYTVVVRH 278 (284)
T ss_pred EEEEEcCCCcCcHHHHHHHHHHHHHhc---CCcceEEc
Confidence 6899999998 58888888885 4443 55565555
No 199
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=28.19 E-value=2.9e+02 Score=24.30 Aligned_cols=45 Identities=18% Similarity=0.340 Sum_probs=24.0
Q ss_pred HHHHHHHHhccccCCCCEEEEEecCCccH-HHHHHHHHHHhhhccCCccEEEEE
Q psy16399 111 LEIHHTIVTNKLFEKHHRIAIAASGGKDS-TVLAHVLKVLNEKYQYGLDLVLLS 163 (165)
Q Consensus 111 ~~v~~~i~~~~~~~~~~~vlvavSGG~DS-~~Ll~ll~~l~~~~~~~~~l~~~~ 163 (165)
.++...+.++...-.|.+++|+ ||.|- ..++.+|.++ |+++.++.
T Consensus 296 ~~~~~~l~~~~~~l~Gkrvai~--~~~~~~~~l~~~l~el------Gm~v~~~~ 341 (432)
T TIGR01285 296 RQLQDAMLDTHFFLGGKKVAIA--AEPDLLAAWATFFTSM------GAQIVAAV 341 (432)
T ss_pred HHHHHHHHHHHHhhCCCEEEEE--cCHHHHHHHHHHHHHC------CCEEEEEE
Confidence 3445555554444567887555 45543 4444444433 66666554
No 200
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=27.92 E-value=2.2e+02 Score=25.67 Aligned_cols=37 Identities=30% Similarity=0.273 Sum_probs=25.7
Q ss_pred CEEEEEecCCccH--HHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 127 HRIAIAASGGKDS--TVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 127 ~~vlvavSGG~DS--~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
..++||++||.-| ++|+..|..+-+. .+.+...+.+|
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~--~g~~vgvISiD 249 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFRV--TGRKSATLSID 249 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcc--cCCceEEEEEC
Confidence 5699999998877 7888888765332 24456666655
No 201
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=27.10 E-value=1.5e+02 Score=27.41 Aligned_cols=38 Identities=26% Similarity=0.240 Sum_probs=28.3
Q ss_pred hhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhh
Q psy16399 109 FELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEK 152 (165)
Q Consensus 109 ~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~ 152 (165)
-.+++.++++++++ + .+-+-||-||+.-++.|.++..+
T Consensus 152 ~~~~i~~~l~~~~I----d--~LviIGGd~S~~~A~~Lae~~~~ 189 (555)
T PRK07085 152 QKEACLETVKKLKL----D--GLVIIGGDDSNTNAAILAEYFAK 189 (555)
T ss_pred HHHHHHHHHHHcCC----C--EEEEeCCchHHHHHHHHHHHHHH
Confidence 34677777888765 2 34467999999999999987554
No 202
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=26.80 E-value=1e+02 Score=19.74 Aligned_cols=32 Identities=16% Similarity=0.245 Sum_probs=27.9
Q ss_pred cchHHHHHHHHHHHHhCCchhhHHHHHhhhcc
Q psy16399 53 AYRGHARTFLKHLEKIRPASIMDIIHSESKYI 84 (165)
Q Consensus 53 ~~R~~~k~~l~~le~~~P~~k~~i~~a~~~~~ 84 (165)
+.+.+++++|..+..+.|.+-..|..++++..
T Consensus 41 ~~~~k~~~Lld~l~~kg~~af~~F~~~L~~~~ 72 (80)
T cd01671 41 TRQDKARKLLDILPRKGPKAFQSFLQALQETD 72 (80)
T ss_pred ChHHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 46888999999999999999999999987643
No 203
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=26.44 E-value=62 Score=29.11 Aligned_cols=28 Identities=7% Similarity=0.103 Sum_probs=25.8
Q ss_pred cceeeccCCCCHHHHHHHHHHcCCccee
Q psy16399 17 IPRCKPLKYAYEKEIVMYAYYKKLVYFS 44 (165)
Q Consensus 17 v~~IRPL~~v~E~ei~~ya~~~~lp~~~ 44 (165)
+-+|-||..-+++||-.|...+++|+-+
T Consensus 254 ~iKvnPLa~Wt~~dVw~Yi~~~~LP~np 281 (463)
T TIGR00424 254 LVKWNPVANVEGKDVWNFLRTMDVPVNT 281 (463)
T ss_pred eEEEeecccCCHHHHHHHHHHcCCCCCc
Confidence 6789999999999999999999999754
No 204
>PLN02564 6-phosphofructokinase
Probab=26.27 E-value=2.9e+02 Score=25.07 Aligned_cols=60 Identities=17% Similarity=0.136 Sum_probs=39.5
Q ss_pred CCCccccccchhhhhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEE
Q psy16399 96 TGDTLCKECFFHAFELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLS 163 (165)
Q Consensus 96 s~~~iCk~C~~~~~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~ 163 (165)
.+..+-+.++...-..++.+.|+++++ + .+-+-||=||+.-++.|.+..++ .++++.++.
T Consensus 151 ~GGTiLGTsR~~~~~~~iv~~L~~~~I----d--~LivIGGDGS~~gA~~L~e~~~~--~g~~i~VIG 210 (484)
T PLN02564 151 RGGTILGTSRGGHDTSKIVDSIQDRGI----N--QVYIIGGDGTQKGASVIYEEIRR--RGLKVAVAG 210 (484)
T ss_pred CCCceeccCCCcchHHHHHHHHHHhCC----C--EEEEECCchHHHHHHHHHHHHHH--cCCCceEEE
Confidence 334455555544456778888888765 2 34456999999999999876555 255655554
No 205
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=25.55 E-value=1.8e+02 Score=20.61 Aligned_cols=42 Identities=10% Similarity=0.111 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHHHcCCcceeCCCCCCCCcchHHHHHHHHHHH
Q psy16399 24 KYAYEKEIVMYAYYKKLVYFSTECIFAPNAYRGHARTFLKHLE 66 (165)
Q Consensus 24 ~~v~E~ei~~ya~~~~lp~~~~~CP~~~~~~R~~~k~~l~~le 66 (165)
..++.+|...+|..++.+++.+.+-.. .....-+..++++++
T Consensus 120 ~~v~~~~~~~~~~~~~~~~~e~Sa~~~-~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 120 REVSVEEAQEFAKELGVPYFEVSAKNG-ENVKEIFQELIRKIL 161 (162)
T ss_dssp SSSCHHHHHHHHHHTTSEEEEEBTTTT-TTHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHhCCEEEEEECCCC-CCHHHHHHHHHHHHh
Confidence 456788999999999999998776543 455666666666654
No 206
>PF09539 DUF2385: Protein of unknown function (DUF2385); InterPro: IPR012645 Members of this uncharacterised protein family are found in a number of alphaproteobacteria, including root nodule bacteria, Brucella suis, Caulobacter crescentus (Caulobacter vibrioides), and Rhodopseudomonas palustris. Conserved residues include two well-separated cysteines, suggesting a disulphide bond. The function is unknown.
Probab=25.42 E-value=36 Score=24.01 Aligned_cols=67 Identities=13% Similarity=0.158 Sum_probs=45.6
Q ss_pred HHHHHHHHHHcC-CcceeCCCC-CCCCcchHHHHHHHHHHHHhCCchhhHHHHHhhhccccCCCcccCCC
Q psy16399 28 EKEIVMYAYYKK-LVYFSTECI-FAPNAYRGHARTFLKHLEKIRPASIMDIIHSESKYIEKNPANFNRPK 95 (165)
Q Consensus 28 E~ei~~ya~~~~-lp~~~~~CP-~~~~~~R~~~k~~l~~le~~~P~~k~~i~~a~~~~~~~~~~~~~~c~ 95 (165)
|.++...|...| +.++-+-|. ..+..-|.+|.++|.. |.-.|..+.+|+.+|..-...-...++.|.
T Consensus 3 ~~~L~rLAeiLGalHyLR~LCg~~~~~~WR~~M~~Ll~~-E~p~~~rR~rl~~aFN~GYr~~~~~Y~~Ct 71 (96)
T PF09539_consen 3 DQQLLRLAEILGALHYLRNLCGGNEDQYWRDRMQALLDA-EAPDEARRARLIAAFNRGYRAFSSVYRTCT 71 (96)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHhHhhccCC
Confidence 445555555555 445667798 5566889999988754 666778899999988665544344556665
No 207
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=24.98 E-value=1.8e+02 Score=19.14 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=18.3
Q ss_pred CCCEEEEEecCCccHHHHHHHHHH
Q psy16399 125 KHHRIAIAASGGKDSTVLAHVLKV 148 (165)
Q Consensus 125 ~~~~vlvavSGG~DS~~Ll~ll~~ 148 (165)
.+++|++...+|..|...+..|..
T Consensus 55 ~~~~iv~~c~~G~rs~~aa~~L~~ 78 (95)
T cd01534 55 RGARIVLADDDGVRADMTASWLAQ 78 (95)
T ss_pred CCCeEEEECCCCChHHHHHHHHHH
Confidence 356788888888888877777754
No 208
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=24.94 E-value=1e+02 Score=24.79 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=22.1
Q ss_pred CCCCEEEEEecCCccHHHHHHHHHHHh
Q psy16399 124 EKHHRIAIAASGGKDSTVLAHVLKVLN 150 (165)
Q Consensus 124 ~~~~~vlvavSGG~DS~~Ll~ll~~l~ 150 (165)
..+.+|+|+++||.--.=..+++..++
T Consensus 17 ~~~k~IllgVtGSIAAyk~~~lvr~L~ 43 (209)
T PLN02496 17 PRKPRILLAASGSVAAIKFGNLCHCFS 43 (209)
T ss_pred CCCCEEEEEEeCHHHHHHHHHHHHHhc
Confidence 346789999999888887888888775
No 209
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=24.86 E-value=3.3e+02 Score=21.26 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=28.6
Q ss_pred hhhHHHHHHHHhccccCCCC--EEEEEecCCccHHHHHHHHHHHhhhc
Q psy16399 108 AFELEIHHTIVTNKLFEKHH--RIAIAASGGKDSTVLAHVLKVLNEKY 153 (165)
Q Consensus 108 ~~~~~v~~~i~~~~~~~~~~--~vlvavSGG~DS~~Ll~ll~~l~~~~ 153 (165)
.+..++++.+++- ..-+ -|+.++.||.=|-....++..+++.+
T Consensus 109 ~~~~~ir~~~e~~---d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y 153 (216)
T PF00091_consen 109 EILEQIRKEIEKC---DSLDGFFIVHSLGGGTGSGLGPVLAEMLREEY 153 (216)
T ss_dssp HHHHHHHHHHHTS---TTESEEEEEEESSSSHHHHHHHHHHHHHHHTS
T ss_pred ccccccchhhccc---cccccceecccccceeccccccccchhhhccc
Confidence 3455555555442 2223 35558999999999899998888875
No 210
>PRK06508 acyl carrier protein; Provisional
Probab=24.79 E-value=70 Score=22.14 Aligned_cols=21 Identities=14% Similarity=0.268 Sum_probs=18.0
Q ss_pred ecCCccHHHHHHHHHHHhhhc
Q psy16399 133 ASGGKDSTVLAHVLKVLNEKY 153 (165)
Q Consensus 133 vSGG~DS~~Ll~ll~~l~~~~ 153 (165)
=.-|.||+-++.++..+.+++
T Consensus 31 edL~~DSLd~veli~~lE~eF 51 (93)
T PRK06508 31 DDLGIDSLDFLDIVFAIDKAF 51 (93)
T ss_pred hccCCCHHHHHHHHHHHHHHH
Confidence 456999999999999998873
No 211
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=24.75 E-value=4.1e+02 Score=23.59 Aligned_cols=28 Identities=11% Similarity=0.049 Sum_probs=16.2
Q ss_pred HHHHcCCcceeCCCCCCCCcchHHHHHH
Q psy16399 34 YAYYKKLVYFSTECIFAPNAYRGHARTF 61 (165)
Q Consensus 34 ya~~~~lp~~~~~CP~~~~~~R~~~k~~ 61 (165)
..+..|+|++...=||+-.+....++++
T Consensus 252 Lee~~GiP~~~~~~p~G~~~t~~~l~~l 279 (455)
T PRK14476 252 LEARTGVPYLVFPSLTGLEAVDRFIATL 279 (455)
T ss_pred HHHHhCCCeEecCCCcChHHHHHHHHHH
Confidence 3345688888765567654444444433
No 212
>COG4825 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=24.43 E-value=1.6e+02 Score=25.41 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=18.4
Q ss_pred HHHHHHHHhccccCCCCEEEEEecCCccHHH
Q psy16399 111 LEIHHTIVTNKLFEKHHRIAIAASGGKDSTV 141 (165)
Q Consensus 111 ~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~ 141 (165)
+.++..|++| +.|+|||+|+.|-+.
T Consensus 197 k~lk~fi~ey------~pvlIgVdGaAD~l~ 221 (395)
T COG4825 197 KSLKPFIKEY------QPVLIGVDGAADVLR 221 (395)
T ss_pred HHHHHHHHhh------CCEEEEccchHHHHH
Confidence 3455566665 569999999999765
No 213
>PLN02884 6-phosphofructokinase
Probab=24.34 E-value=2.4e+02 Score=24.99 Aligned_cols=60 Identities=15% Similarity=0.151 Sum_probs=39.2
Q ss_pred CCCccccccchhhhhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEE
Q psy16399 96 TGDTLCKECFFHAFELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLS 163 (165)
Q Consensus 96 s~~~iCk~C~~~~~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~ 163 (165)
.+..+-+.|+.....+++.+.|++++. + .+-+-||=||+.-++.|.+..++. +.++.++.
T Consensus 118 ~GGt~LGtsR~~~~~~~i~~~L~~~~I----d--~LivIGGdgS~~~a~~L~~~~~~~--g~~i~vIG 177 (411)
T PLN02884 118 SGGSLLGVSRGGAKTSDIVDSIEARGI----N--MLFVLGGNGTHAGANAIHNECRKR--KMKVSVVG 177 (411)
T ss_pred CCCceeccCCCCccHHHHHHHHHHcCC----C--EEEEECCchHHHHHHHHHHHHHHc--CCCceEEe
Confidence 344455555554457788888888765 2 344569999999999999864442 43444443
No 214
>PRK00509 argininosuccinate synthase; Provisional
Probab=24.15 E-value=88 Score=27.57 Aligned_cols=34 Identities=12% Similarity=0.152 Sum_probs=27.4
Q ss_pred cceeeccCCC---CHHHHHHHHHHcCCccee-CCCCCC
Q psy16399 17 IPRCKPLKYA---YEKEIVMYAYYKKLVYFS-TECIFA 50 (165)
Q Consensus 17 v~~IRPL~~v---~E~ei~~ya~~~~lp~~~-~~CP~~ 50 (165)
+.+|-|+... +.+|++.||+.+|||+-. ..=||+
T Consensus 138 l~VisPlre~~~~tK~eir~~A~~~Gipv~~~~~~~yS 175 (399)
T PRK00509 138 LKVIAPWREWDLKSREELIAYAEEHGIPIPVTKKSPYS 175 (399)
T ss_pred CeeecchhhcCCCCHHHHHHHHHHcCCCCCCCCCCCCc
Confidence 3688898887 899999999999999753 233776
No 215
>KOG1907|consensus
Probab=23.94 E-value=35 Score=33.53 Aligned_cols=16 Identities=50% Similarity=0.715 Sum_probs=13.9
Q ss_pred EEEEecCCccHHHHHH
Q psy16399 129 IAIAASGGKDSTVLAH 144 (165)
Q Consensus 129 vlvavSGG~DS~~Ll~ 144 (165)
+-+|+.|||||+.|+.
T Consensus 785 LgiAIdgGKDSlSMa~ 800 (1320)
T KOG1907|consen 785 LGIAIDGGKDSLSMAM 800 (1320)
T ss_pred hceeecCCccchhhhe
Confidence 6789999999998864
No 216
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=23.87 E-value=1.3e+02 Score=20.30 Aligned_cols=32 Identities=16% Similarity=0.043 Sum_probs=27.6
Q ss_pred CcchHHHHHHHHHHHHhCCchhhHHHHHhhhcc
Q psy16399 52 NAYRGHARTFLKHLEKIRPASIMDIIHSESKYI 84 (165)
Q Consensus 52 ~~~R~~~k~~l~~le~~~P~~k~~i~~a~~~~~ 84 (165)
.+.+..+..+|..|+ +.||.-..|+.|+++..
T Consensus 45 ~G~~~aa~~Ll~~L~-r~~~Wf~~Fl~AL~~~~ 76 (84)
T cd08789 45 SGNIKAAWTLLDTLV-RRDNWLEPFLDALRECG 76 (84)
T ss_pred CChHHHHHHHHHHHh-ccCChHHHHHHHHHHcC
Confidence 456888999999999 89999999999997654
No 217
>KOG3147|consensus
Probab=23.47 E-value=89 Score=25.88 Aligned_cols=25 Identities=36% Similarity=0.557 Sum_probs=17.4
Q ss_pred cCCCCEEEEEecCCccHHHHHHHHH
Q psy16399 123 FEKHHRIAIAASGGKDSTVLAHVLK 147 (165)
Q Consensus 123 ~~~~~~vlvavSGG~DS~~Ll~ll~ 147 (165)
++.+.++-||+|||.==.+|...|.
T Consensus 36 ~~~~g~F~i~lSGGSLi~~L~~~l~ 60 (252)
T KOG3147|consen 36 LKKRGRFTLALSGGSLIQVLSKLLE 60 (252)
T ss_pred HhcCCeEEEEEcCCcHHHHHHHHhc
Confidence 4566789999999964445544444
No 218
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=23.37 E-value=87 Score=20.68 Aligned_cols=47 Identities=15% Similarity=0.108 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHcCCcceeCCCCCC-----CCcchHHHHHHHHHHHHhCCchh
Q psy16399 27 YEKEIVMYAYYKKLVYFSTECIFA-----PNAYRGHARTFLKHLEKIRPASI 73 (165)
Q Consensus 27 ~E~ei~~ya~~~~lp~~~~~CP~~-----~~~~R~~~k~~l~~le~~~P~~k 73 (165)
...+|.......++.++....-.. -...+..+++++++||+.+|+..
T Consensus 17 ~d~~i~~~l~~~~v~ii~K~~nANtit~yl~~~~k~~~r~~~~Le~~~p~a~ 68 (71)
T cd04910 17 YDLEILELLQRFKVSIIAKDTNANTITHYLAGSLKTIKRLTEDLENRFPNAE 68 (71)
T ss_pred HHHHHHHHHHHcCCeEEEEecCCCeEEEEEEcCHHHHHHHHHHHHHhCccCc
Confidence 345677777788888887643332 12556789999999999999864
No 219
>PRK13795 hypothetical protein; Provisional
Probab=23.18 E-value=1.1e+02 Score=28.52 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=24.5
Q ss_pred cceeeccCCCCHHHHHHHHHHcCCcce
Q psy16399 17 IPRCKPLKYAYEKEIVMYAYYKKLVYF 43 (165)
Q Consensus 17 v~~IRPL~~v~E~ei~~ya~~~~lp~~ 43 (165)
..++-|+..-++.||-.|...+|+|+-
T Consensus 375 ~~~~~PI~~Wt~~dVw~YI~~~~lp~n 401 (636)
T PRK13795 375 QIGASPIQDWTALEVWLYIFWRKLPYN 401 (636)
T ss_pred cEEEechHhCCHHHHHHHHHHhCCCCC
Confidence 467999999999999999999999964
No 220
>PLN02796 D-glycerate 3-kinase
Probab=23.15 E-value=3.1e+02 Score=23.78 Aligned_cols=37 Identities=30% Similarity=0.276 Sum_probs=23.4
Q ss_pred CEEEEEecCCccH--HHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 127 HRIAIAASGGKDS--TVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 127 ~~vlvavSGG~DS--~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
..++||++|+.=| ++|+..|..+-.. .+.....+.+|
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~--~g~~~g~IsiD 137 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFNA--TGRRAASLSID 137 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhcc--cCCceeEEEEC
Confidence 4689999997666 7777777765322 13345555544
No 221
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=23.14 E-value=1.4e+02 Score=21.27 Aligned_cols=41 Identities=15% Similarity=-0.015 Sum_probs=26.2
Q ss_pred HHHHHHHHHHcCCcceeCCC--CCC-CCcchHHHHHHHHHHHHh
Q psy16399 28 EKEIVMYAYYKKLVYFSTEC--IFA-PNAYRGHARTFLKHLEKI 68 (165)
Q Consensus 28 E~ei~~ya~~~~lp~~~~~C--P~~-~~~~R~~~k~~l~~le~~ 68 (165)
++.+..||..+|+++...-+ ..+ ....|..++++|+.++..
T Consensus 21 ~~~~~~~a~~~g~~i~~~~~d~~~Sg~~~~Rp~l~~ll~~~~~g 64 (148)
T smart00857 21 LEALRAYAKANGWEVVRIYEDEGVSGKKADRPGLQRLLADLRAG 64 (148)
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHcC
Confidence 45688999999998654222 222 223477777777776653
No 222
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=23.08 E-value=1.9e+02 Score=19.83 Aligned_cols=34 Identities=15% Similarity=0.276 Sum_probs=23.6
Q ss_pred CEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEE
Q psy16399 127 HRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLS 163 (165)
Q Consensus 127 ~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~ 163 (165)
+.++|.+|-+-++..+..++...+++ +.++.+++
T Consensus 61 ~~~~i~iS~~g~~~~~~~~~~~a~~~---g~~iv~iT 94 (139)
T cd05013 61 GDVVIAISFSGETKETVEAAEIAKER---GAKVIAIT 94 (139)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHc---CCeEEEEc
Confidence 45888888777777777777776554 56666654
No 223
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=22.79 E-value=2.4e+02 Score=18.65 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=16.2
Q ss_pred CEEEEEecCCccHHHHH-HHHHHH
Q psy16399 127 HRIAIAASGGKDSTVLA-HVLKVL 149 (165)
Q Consensus 127 ~~vlvavSGG~DS~~Ll-~ll~~l 149 (165)
++|+++.++|.-|..|+ .-+.+.
T Consensus 1 ~kilvvCg~G~gtS~ml~~ki~~~ 24 (87)
T cd05567 1 KKIVFACDAGMGSSAMGASVLRKK 24 (87)
T ss_pred CEEEEECCCCccHHHHHHHHHHHH
Confidence 36889999999887764 345444
No 224
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=22.77 E-value=1.9e+02 Score=22.39 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=27.9
Q ss_pred hhHHHHHHHHhccccCCC-CEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEE
Q psy16399 109 FELEIHHTIVTNKLFEKH-HRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLL 162 (165)
Q Consensus 109 ~~~~v~~~i~~~~~~~~~-~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~ 162 (165)
+...+.+.|.+. +..| ..++.+---|+|-.++--+| +++++++ +++++++
T Consensus 27 ik~~L~~~i~~l--ie~G~~~fi~GgalG~D~waae~vl-~LK~~yp-~ikL~~v 77 (177)
T PF06908_consen 27 IKKALKKQIIEL--IEEGVRWFITGGALGVDLWAAEVVL-ELKKEYP-EIKLALV 77 (177)
T ss_dssp HHHHHHHHHHHH--HTTT--EEEE---TTHHHHHHHHHH-TTTTT-T-T-EEEEE
T ss_pred HHHHHHHHHHHH--HHCCCCEEEECCcccHHHHHHHHHH-HHHhhhh-heEEEEE
Confidence 444455544442 3334 57888888999988776666 6666653 6777765
No 225
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=22.67 E-value=2.3e+02 Score=18.36 Aligned_cols=47 Identities=17% Similarity=0.098 Sum_probs=27.2
Q ss_pred ccccccchhhhhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHH
Q psy16399 99 TLCKECFFHAFELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVL 149 (165)
Q Consensus 99 ~iCk~C~~~~~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l 149 (165)
..|..|.. ....+.+..++++ .+++--+|++|-..|.-.....+.+.
T Consensus 11 ~~c~~c~~--~~~~l~~l~~~~~--~~~~v~~v~Vs~d~~~~~~~~~~~~~ 57 (95)
T PF13905_consen 11 SWCPPCKK--ELPKLKELYKKYK--KKDDVEFVFVSLDEDEEEWKKFLKKN 57 (95)
T ss_dssp TTSHHHHH--HHHHHHHHHHHHT--TTTTEEEEEEE-SSSHHHHHHHHHTC
T ss_pred CCCHHHHH--HHHHHHHHHHHhC--CCCCEEEEEEEeCCCHHHHHHHHHhc
Confidence 35666654 4445555555553 14556788888887766665555544
No 226
>PF09875 DUF2102: Uncharacterized protein conserved in archaea (DUF2102); InterPro: IPR012025 The exact functionof this protein unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=22.12 E-value=3e+02 Score=19.70 Aligned_cols=51 Identities=12% Similarity=0.175 Sum_probs=39.7
Q ss_pred eccCCCCHHHHHHHHHHcCCccee-CCCC-CCCCcchHHHHHHHHHHHHhCCc
Q psy16399 21 KPLKYAYEKEIVMYAYYKKLVYFS-TECI-FAPNAYRGHARTFLKHLEKIRPA 71 (165)
Q Consensus 21 RPL~~v~E~ei~~ya~~~~lp~~~-~~CP-~~~~~~R~~~k~~l~~le~~~P~ 71 (165)
-|=..++..|++.++...+.|+.- ..|= ..-+.-+..++++++++.+..|.
T Consensus 5 ~~~~~v~Ps~l~~~~~~~~~~v~iKETCFG~~i~Ge~e~V~~~i~~iR~ld~~ 57 (104)
T PF09875_consen 5 SSEANVSPSDLAMKLYELSLPVTIKETCFGAMIEGEEEEVDKVIEEIRKLDPN 57 (104)
T ss_pred CCCCCcCHHHHHHHHHhcCCCceeeecceeeEEECCHHHHHHHHHHHHhhCCC
Confidence 344557889999999999999664 5564 22557889999999999988874
No 227
>PRK03601 transcriptional regulator HdfR; Provisional
Probab=21.89 E-value=2.7e+02 Score=22.12 Aligned_cols=37 Identities=22% Similarity=0.236 Sum_probs=29.3
Q ss_pred CCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEE
Q psy16399 125 KHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLL 162 (165)
Q Consensus 125 ~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~ 162 (165)
.+..+-||+|.+.....+..++..+++.+| +.++.+.
T Consensus 87 ~~~~l~Ig~~~~~~~~~l~~~l~~f~~~~P-~v~v~~~ 123 (275)
T PRK03601 87 QHNELSIGASASLWECMLTPWLGRLYQNQE-ALQFEAR 123 (275)
T ss_pred cCceEEEeccHHHHHHHHHHHHHHHHHhCC-CcEEEEE
Confidence 346799999999999999999999987753 6666543
No 228
>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.
Probab=21.84 E-value=63 Score=22.94 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=21.2
Q ss_pred eccCCCCHHHHHHHHHHcCCcceeCCC
Q psy16399 21 KPLKYAYEKEIVMYAYYKKLVYFSTEC 47 (165)
Q Consensus 21 RPL~~v~E~ei~~ya~~~~lp~~~~~C 47 (165)
-.|.|-+.++-++||+.+|++|.-.+-
T Consensus 51 v~l~F~skE~Ai~yaer~G~~Y~V~~p 77 (101)
T PF04800_consen 51 VRLKFDSKEDAIAYAERNGWDYEVEEP 77 (101)
T ss_dssp CEEEESSHHHHHHHHHHCT-EEEEE-S
T ss_pred eEeeeCCHHHHHHHHHHcCCeEEEeCC
Confidence 347889999999999999999876543
No 229
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=21.80 E-value=1.9e+02 Score=24.97 Aligned_cols=53 Identities=11% Similarity=0.169 Sum_probs=38.9
Q ss_pred HHHHHHHHcCCcce-----eCCCCCCCCcchHHHHHHHHHHHHh--------------CCchhhHHHHHhhh
Q psy16399 30 EIVMYAYYKKLVYF-----STECIFAPNAYRGHARTFLKHLEKI--------------RPASIMDIIHSESK 82 (165)
Q Consensus 30 ei~~ya~~~~lp~~-----~~~CP~~~~~~R~~~k~~l~~le~~--------------~P~~k~~i~~a~~~ 82 (165)
+++.||+..|+.+. .-.||++..+--..+.++..++.+. .|.....+++++.+
T Consensus 166 ~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~ 237 (347)
T PLN02746 166 EVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMA 237 (347)
T ss_pred HHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHH
Confidence 67889999999884 3569999887788888888887754 34555566666544
No 230
>PRK06437 hypothetical protein; Provisional
Probab=21.74 E-value=69 Score=20.58 Aligned_cols=15 Identities=33% Similarity=0.470 Sum_probs=10.6
Q ss_pred ccCCCCEEEE--EecCC
Q psy16399 122 LFEKHHRIAI--AASGG 136 (165)
Q Consensus 122 ~~~~~~~vlv--avSGG 136 (165)
.+++||+|-+ ++|||
T Consensus 51 ~L~dgD~Veiv~~V~GG 67 (67)
T PRK06437 51 NVKKEDDVLILEVFSGG 67 (67)
T ss_pred EcCCCCEEEEEecccCC
Confidence 3667887544 88887
No 231
>COG5451 Predicted secreted protein [Function unknown]
Probab=21.35 E-value=1e+02 Score=22.71 Aligned_cols=84 Identities=12% Similarity=0.159 Sum_probs=54.3
Q ss_pred CCCCCCCCCcceeeccCCCCHHHHHHHHHHcC-CcceeCCCCCCCC-cchHHHHHHHHHHHHhCCchhhHHHHHhhhccc
Q psy16399 8 PSFTTGADSIPRCKPLKYAYEKEIVMYAYYKK-LVYFSTECIFAPN-AYRGHARTFLKHLEKIRPASIMDIIHSESKYIE 85 (165)
Q Consensus 8 ~~~~~~~~~v~~IRPL~~v~E~ei~~ya~~~~-lp~~~~~CP~~~~-~~R~~~k~~l~~le~~~P~~k~~i~~a~~~~~~ 85 (165)
.++.+.+-+..--|| -+|.-....|...| +.+.-+.|+-.+. .-|..|-++++.- +-.|..+.+|..+|..-..
T Consensus 16 e~~a~~P~~Aqe~kp---py~~~LlrlAe~LGs~hyLRnlC~~~g~q~WR~~m~~L~~~E-~adp~rr~rm~a~FNrGyr 91 (128)
T COG5451 16 ELIAAEPVLAQERKP---PYDQRLLRLAEALGSVHYLRNLCGEKGDQYWRSRMVALIAAE-QADPARRARMTAAFNRGYR 91 (128)
T ss_pred cccccCccccccCCC---CchHHHHHHHHHHhHHHHHHHHccccccHHHHHHHHHHHhcc-cCCHHHHHHHHHHHhhhhh
Confidence 334433333333455 45566667776666 4567788997755 4899898887664 4478888899988866554
Q ss_pred cCCCcccCCC
Q psy16399 86 KNPANFNRPK 95 (165)
Q Consensus 86 ~~~~~~~~c~ 95 (165)
.....+++|-
T Consensus 92 sf~s~yt~Ct 101 (128)
T COG5451 92 SFASEYTRCT 101 (128)
T ss_pred hhcccccccC
Confidence 4445566665
No 232
>PRK14072 6-phosphofructokinase; Provisional
Probab=21.24 E-value=2.4e+02 Score=24.92 Aligned_cols=38 Identities=18% Similarity=0.124 Sum_probs=28.2
Q ss_pred hhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhh
Q psy16399 109 FELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEK 152 (165)
Q Consensus 109 ~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~ 152 (165)
..+++.+.++++++ + .+-+-||=||+..++.|.++.++
T Consensus 91 ~~~~~~~~l~~~~I----d--~LivIGGdgS~~~a~~L~e~~~~ 128 (416)
T PRK14072 91 EYERLLEVFKAHDI----G--YFFYNGGNDSMDTALKVSQLAKK 128 (416)
T ss_pred HHHHHHHHHHHcCC----C--EEEEECChHHHHHHHHHHHHHHH
Confidence 45677777888755 2 34456999999999999987555
No 233
>PLN00200 argininosuccinate synthase; Provisional
Probab=21.20 E-value=1e+02 Score=27.17 Aligned_cols=35 Identities=11% Similarity=0.208 Sum_probs=27.0
Q ss_pred cceeeccCCCC---HHHHHHHHHHcCCccee-CCCCCCC
Q psy16399 17 IPRCKPLKYAY---EKEIVMYAYYKKLVYFS-TECIFAP 51 (165)
Q Consensus 17 v~~IRPL~~v~---E~ei~~ya~~~~lp~~~-~~CP~~~ 51 (165)
+.+|-|+.... .+|++.||+.+|||+.. ..=||+.
T Consensus 142 l~ViaPlre~~~~~r~e~~~~A~~~Gipv~~~~~~~yS~ 180 (404)
T PLN00200 142 LKVVAPWREWDIKGREDLIEYAKKHNIPVPVTKKSIYSR 180 (404)
T ss_pred CeeeCchhhcCCCCHHHHHHHHHHcCCCCCCCCCCCCcc
Confidence 36788887764 89999999999999754 3456763
No 234
>COG3588 Fructose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=21.08 E-value=1.2e+02 Score=25.88 Aligned_cols=35 Identities=20% Similarity=0.115 Sum_probs=22.6
Q ss_pred CEEEEEecCCccHHHHHHHHHHHhhhccCCccEEE
Q psy16399 127 HRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVL 161 (165)
Q Consensus 127 ~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~ 161 (165)
-+=+|++|||-.|-=.-..|+......+..|.+++
T Consensus 253 vpgIvfLSGG~s~eeA~~~Lsa~n~~~~~pw~L~f 287 (332)
T COG3588 253 VPGIVFLSGGYSSEEANAHLSANNGERPLPWSLIF 287 (332)
T ss_pred cceeEEecCCcchHHHHHHHHhhcCCCCCCceeee
Confidence 34489999999887666666665433344565543
No 235
>cd08785 CARD_CARD9-like Caspase activation and recruitment domain of CARD9 and related proteins. Caspase activation and recruitment domain (CARD) found in CARD9, CARD14 (CARMA2), CARD10 (CARMA3), CARD11 (CARMA1) and BCL10. BCL10 (B-cell lymphoma 10), together with Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), are integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells), and with CARD11 to form L-CBM (CBM complex in lymphoid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. BCL10/Malt1 also associates with CARD10, which is more widely expressed and is not restricted to hematopoietic cells, to play a role in GPCR-induced NF-kB activation. CARD14 has also been shown to associate with BCL10. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inf
Probab=20.99 E-value=1.5e+02 Score=20.29 Aligned_cols=55 Identities=13% Similarity=0.108 Sum_probs=36.5
Q ss_pred HHHHHHHHcCCccee-CCCCCCCCc---chHHHHHHHHHHHHhCCchhhHHHHHhhhcc
Q psy16399 30 EIVMYAYYKKLVYFS-TECIFAPNA---YRGHARTFLKHLEKIRPASIMDIIHSESKYI 84 (165)
Q Consensus 30 ei~~ya~~~~lp~~~-~~CP~~~~~---~R~~~k~~l~~le~~~P~~k~~i~~a~~~~~ 84 (165)
++..|-...|+-... .+.-.+..+ .+.+...+|+-|+.+-|++-..|+.|++...
T Consensus 20 ~l~d~L~q~~VLt~~d~EeI~~~~t~~~r~~ka~~LLdiL~~rG~~Af~~F~~aL~~~y 78 (86)
T cd08785 20 RLTPYLRQCKVLDEQDEEEVLSSPRLPIRANRTGRLLDILATRGKRGYVAFLESLEFYY 78 (86)
T ss_pred HHHHHHHhcCCCCHHHHHHHhCCCccccHHHHHHHHHHHHHhcCcchHHHHHHHHHHhC
Confidence 355566666643222 111122333 4588999999999999999999999986443
No 236
>PF06840 DUF1241: Protein of unknown function (DUF1241); InterPro: IPR009652 This family consists of several programmed cell death 10 protein (PDCD10 or TFAR15) sequences. The function of this family is unknown.; PDB: 3L8I_A 3RQG_B 3RQE_B 3L8J_A 3RQF_B 3AJM_B.
Probab=20.97 E-value=1.5e+02 Score=22.63 Aligned_cols=29 Identities=17% Similarity=0.129 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhCCchhhHHHHHhhhcc
Q psy16399 56 GHARTFLKHLEKIRPASIMDIIHSESKYI 84 (165)
Q Consensus 56 ~~~k~~l~~le~~~P~~k~~i~~a~~~~~ 84 (165)
...|.-+..-|+.+||+-..|+..+.+-.
T Consensus 33 q~Lr~Af~kAE~~~PGft~d~v~~ll~~~ 61 (154)
T PF06840_consen 33 QTLRAAFTKAEKSSPGFTDDFVKGLLERS 61 (154)
T ss_dssp HHHHHHHHHHHHHSTTHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHhc
Confidence 45777888899999999999999885544
No 237
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=20.87 E-value=45 Score=22.09 Aligned_cols=21 Identities=19% Similarity=0.331 Sum_probs=16.4
Q ss_pred HHHHHHHHHcCCcceeCCCCCC
Q psy16399 29 KEIVMYAYYKKLVYFSTECIFA 50 (165)
Q Consensus 29 ~ei~~ya~~~~lp~~~~~CP~~ 50 (165)
++...||..+|+.+. ..|||.
T Consensus 45 ~~~l~~a~~~~~kv~-p~C~y~ 65 (78)
T PF14542_consen 45 EAALDYARENGLKVV-PTCSYV 65 (78)
T ss_dssp HHHHHHHHHTT-EEE-ETSHHH
T ss_pred HHHHHHHHHCCCEEE-EECHHH
Confidence 467899999999866 679984
No 238
>COG1619 LdcA Uncharacterized proteins, homologs of microcin C7 resistance protein MccF [Defense mechanisms]
Probab=20.74 E-value=1.3e+02 Score=25.54 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=22.9
Q ss_pred hHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHH
Q psy16399 110 ELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLK 147 (165)
Q Consensus 110 ~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~ 147 (165)
++++....+.+ ..++.++++++.||-+|.=+|-.|.
T Consensus 60 ~~R~~dL~~af--~d~~vk~Il~~rGGygs~rlLp~ld 95 (313)
T COG1619 60 EERAEDLMSAF--SDPDVKAILCVRGGYGSNRLLPYLD 95 (313)
T ss_pred HHHHHHHHHHh--cCCCCeEEEEcccCCChhhhhhhcc
Confidence 45555555553 3456677777777777776666554
No 239
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=20.66 E-value=2.2e+02 Score=18.88 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=24.2
Q ss_pred HHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHH
Q psy16399 112 EIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVL 149 (165)
Q Consensus 112 ~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l 149 (165)
.+.+.+...+ ..+++.|++...+|..|...+.+|..+
T Consensus 53 ~~~~~~~~~~-~~~~~~ivv~c~~g~~s~~~~~~l~~~ 89 (106)
T cd01519 53 EFEKKYGFPK-PSKDKELIFYCKAGVRSKAAAELARSL 89 (106)
T ss_pred HHHHHhcccC-CCCCCeEEEECCCcHHHHHHHHHHHHc
Confidence 3444444432 245678888888888887777777654
No 240
>PF13809 Tubulin_2: Tubulin like
Probab=20.54 E-value=3.9e+02 Score=22.62 Aligned_cols=50 Identities=8% Similarity=0.049 Sum_probs=32.8
Q ss_pred cccchhhhhHHHHHHHHh-----ccccC--CCCE--EEEEecCCccHHHHHHHHHHHhh
Q psy16399 102 KECFFHAFELEIHHTIVT-----NKLFE--KHHR--IAIAASGGKDSTVLAHVLKVLNE 151 (165)
Q Consensus 102 k~C~~~~~~~~v~~~i~~-----~~~~~--~~~~--vlvavSGG~DS~~Ll~ll~~l~~ 151 (165)
-.|....+.+.+.+.+++ ..... .+-. |+-+++||.=|-.++++...++.
T Consensus 116 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~V~Vv~SlaGGTGSG~~lDia~~lr~ 174 (345)
T PF13809_consen 116 FFSNYQEIREALEAALDNFMQERLGGKGGGGGLNVFVVGSLAGGTGSGMFLDIAYLLRD 174 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccCCCCCcEEEEEEecCCccchhHHHHHHHHHHH
Confidence 355556677777777772 21111 1123 45589999999999998887765
No 241
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=20.35 E-value=4.4e+02 Score=20.79 Aligned_cols=87 Identities=11% Similarity=0.164 Sum_probs=44.9
Q ss_pred HHHHHHHHHhCCchhhHHHHHhhhccccC--CC-cccCCCCCCcccccc-chhhhhHHHHHHHHhccccCCCCEEEEEec
Q psy16399 59 RTFLKHLEKIRPASIMDIIHSESKYIEKN--PA-NFNRPKTGDTLCKEC-FFHAFELEIHHTIVTNKLFEKHHRIAIAAS 134 (165)
Q Consensus 59 k~~l~~le~~~P~~k~~i~~a~~~~~~~~--~~-~~~~c~s~~~iCk~C-~~~~~~~~v~~~i~~~~~~~~~~~vlvavS 134 (165)
++|+.++.+..-=...+++.||+.+-+.. +. .....+....+--.| ....-...+.+.++.-. +++|++||--=|
T Consensus 3 ~~lv~~l~~~g~v~~~~v~~A~~~VpR~~Fvp~~~~~~aY~d~~l~i~~~~~is~P~~~a~~l~~L~-l~pg~~VLeIGt 81 (209)
T PF01135_consen 3 KALVDNLIRPGDVTDPRVLDAFRAVPREDFVPPAFRDLAYEDRPLPIGCGQTISAPSMVARMLEALD-LKPGDRVLEIGT 81 (209)
T ss_dssp HHHHHHHHHTTSS-SHHHHHHHHHS-GGGCSSCGGGGGTTSSS-EEEETTEEE--HHHHHHHHHHTT-C-TT-EEEEES-
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHhCCHHHhCchhhhcCCCCCCCeeecceeechHHHHHHHHHHHHh-cCCCCEEEEecC
Confidence 46788888766557888999998877532 22 112333333332222 11122233334444433 689999997667
Q ss_pred C-CccHHHHHHHH
Q psy16399 135 G-GKDSTVLAHVL 146 (165)
Q Consensus 135 G-G~DS~~Ll~ll 146 (165)
| |--+.+|++++
T Consensus 82 GsGY~aAlla~lv 94 (209)
T PF01135_consen 82 GSGYQAALLAHLV 94 (209)
T ss_dssp TTSHHHHHHHHHH
T ss_pred CCcHHHHHHHHhc
Confidence 6 66666666665
No 242
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=20.31 E-value=2.6e+02 Score=19.53 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=22.9
Q ss_pred CEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEE
Q psy16399 127 HRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLS 163 (165)
Q Consensus 127 ~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~ 163 (165)
+-+++++|..-.+.-++..+...+++ +..+++++
T Consensus 48 ~dl~I~iS~SG~t~~~~~~~~~a~~~---g~~vi~iT 81 (120)
T cd05710 48 KSVVILASHSGNTKETVAAAKFAKEK---GATVIGLT 81 (120)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHc---CCeEEEEE
Confidence 34777777777777777777777654 56666654
No 243
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=20.19 E-value=4.5e+02 Score=22.55 Aligned_cols=47 Identities=17% Similarity=0.290 Sum_probs=34.2
Q ss_pred hhhhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhcc
Q psy16399 107 HAFELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQ 154 (165)
Q Consensus 107 ~~~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~ 154 (165)
..+..++++.+++-..+ .|=.|+-.++||.-|-+...++..+++.++
T Consensus 73 e~~~d~ir~~~E~cD~l-~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~ 119 (382)
T cd06059 73 DEILDRIRKQVEKCDSL-QGFQITHSLGGGTGSGLGSLLLELLSDEYP 119 (382)
T ss_pred HHHHHHHHHHHHhCCCc-CceEEEEecCCCcchhHHHHHHHHHHHhcC
Confidence 44566666667665443 244678899999999999999988888753
No 244
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=20.16 E-value=1.8e+02 Score=18.13 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=21.8
Q ss_pred cCCCCEEEEEecCCccHHHHHHHHHHH
Q psy16399 123 FEKHHRIAIAASGGKDSTVLAHVLKVL 149 (165)
Q Consensus 123 ~~~~~~vlvavSGG~DS~~Ll~ll~~l 149 (165)
..+++.|++...+|.+|...+..|.+.
T Consensus 47 ~~~~~~vv~~c~~~~~a~~~~~~l~~~ 73 (89)
T cd00158 47 LDKDKPIVVYCRSGNRSARAAKLLRKA 73 (89)
T ss_pred cCCCCeEEEEeCCCchHHHHHHHHHHh
Confidence 456778888888899998888888765
No 245
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=20.16 E-value=3.4e+02 Score=21.25 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=18.7
Q ss_pred CCCCEEEEEecCCccH--HHHHHHHHHH
Q psy16399 124 EKHHRIAIAASGGKDS--TVLAHVLKVL 149 (165)
Q Consensus 124 ~~~~~vlvavSGG~DS--~~Ll~ll~~l 149 (165)
..+...++|++|..=| ++|+..|..+
T Consensus 29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 29 EPQRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3466789999885554 8888877755
No 246
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=20.05 E-value=2.6e+02 Score=25.96 Aligned_cols=35 Identities=14% Similarity=0.298 Sum_probs=24.0
Q ss_pred CEEEEEecCCccHH--HHHHHHHHHhhhccCCccEEEEEe
Q psy16399 127 HRIAIAASGGKDST--VLAHVLKVLNEKYQYGLDLVLLSI 164 (165)
Q Consensus 127 ~~vlvavSGG~DS~--~Ll~ll~~l~~~~~~~~~l~~~~v 164 (165)
.+++|-+|-|.++. -.+..+.+|+.. ++++.+++|
T Consensus 150 pKVVILLTDG~sns~~dvleaAq~LR~~---GVeI~vIGV 186 (576)
T PTZ00441 150 IQLVILMTDGIPNSKYRALEESRKLKDR---NVKLAVIGI 186 (576)
T ss_pred ceEEEEEecCCCCCcccHHHHHHHHHHC---CCEEEEEEe
Confidence 47999999999743 233445566543 788888876
Done!