Query psy16399
Match_columns 165
No_of_seqs 235 out of 2033
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 20:19:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16399.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16399hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wy5_A TILS, hypothetical UPF0 99.4 6.6E-13 2.3E-17 110.2 6.2 61 103-165 1-62 (317)
2 3a2k_A TRNA(Ile)-lysidine synt 99.3 3.7E-12 1.3E-16 110.9 5.6 54 110-165 2-55 (464)
3 1sur_A PAPS reductase; assimil 98.9 9.5E-10 3.2E-14 86.0 6.1 46 109-165 32-77 (215)
4 3tqi_A GMP synthase [glutamine 98.8 2.3E-09 7.9E-14 94.7 4.3 62 99-165 203-264 (527)
5 2o8v_A Phosphoadenosine phosph 98.6 2.9E-08 9.9E-13 79.7 5.7 45 110-165 34-78 (252)
6 2ywb_A GMP synthase [glutamine 98.6 1.8E-08 6.3E-13 88.4 4.5 60 100-165 183-242 (503)
7 1zun_A Sulfate adenylyltransfe 98.6 1.9E-08 6.5E-13 84.0 4.0 55 107-165 29-83 (325)
8 2e18_A NH(3)-dependent NAD(+) 98.6 6.1E-08 2.1E-12 77.8 5.4 50 107-165 7-57 (257)
9 3uow_A GMP synthetase; structu 98.5 7.5E-08 2.6E-12 85.6 5.4 62 99-165 228-289 (556)
10 2oq2_A Phosphoadenosine phosph 98.5 1.2E-07 4.1E-12 76.5 5.5 47 110-165 31-77 (261)
11 1wy5_A TILS, hypothetical UPF0 98.5 1.8E-07 6.2E-12 77.3 6.4 68 18-85 164-232 (317)
12 1ni5_A Putative cell cycle pro 98.5 1.9E-07 6.4E-12 80.6 6.5 70 16-85 149-219 (433)
13 2wsi_A FAD synthetase; transfe 98.4 2.7E-07 9.2E-12 76.3 6.1 40 126-165 53-108 (306)
14 2vxo_A GMP synthase [glutamine 98.4 1.7E-07 5.8E-12 85.4 5.2 59 99-165 213-275 (697)
15 1gpm_A GMP synthetase, XMP ami 98.4 1.3E-07 4.4E-12 83.4 4.2 59 99-165 200-261 (525)
16 3p52_A NH(3)-dependent NAD(+) 98.4 2.8E-07 9.7E-12 74.1 5.5 52 109-165 9-60 (249)
17 1xng_A NH(3)-dependent NAD(+) 98.4 2.1E-07 7.1E-12 75.2 4.4 52 109-165 8-59 (268)
18 2c5s_A THII, probable thiamine 98.4 1.8E-07 6.3E-12 80.2 4.0 36 124-165 185-220 (413)
19 3a2k_A TRNA(Ile)-lysidine synt 98.4 7.1E-07 2.4E-11 77.5 7.3 69 17-85 161-230 (464)
20 2goy_A Adenosine phosphosulfat 98.2 9.7E-07 3.3E-11 71.7 4.6 44 110-165 43-86 (275)
21 3fiu_A NH(3)-dependent NAD(+) 98.2 2.2E-06 7.6E-11 68.8 5.8 51 109-165 12-62 (249)
22 2dpl_A GMP synthetase, GMP syn 98.1 2E-06 6.8E-11 71.1 3.7 24 126-149 20-43 (308)
23 2der_A TRNA-specific 2-thiouri 97.8 6.7E-06 2.3E-10 69.9 2.7 28 122-149 13-40 (380)
24 3q4g_A NH(3)-dependent NAD(+) 97.8 2.2E-05 7.6E-10 64.2 5.2 53 109-165 27-84 (279)
25 1kqp_A NAD+ synthase, NH(3)-de 97.7 3.6E-05 1.2E-09 62.3 5.4 40 126-165 38-80 (271)
26 1wxi_A NH(3)-dependent NAD(+) 97.7 4.7E-05 1.6E-09 61.9 5.6 40 126-165 40-84 (275)
27 3n05_A NH(3)-dependent NAD(+) 97.6 4.5E-05 1.5E-09 68.0 5.1 54 107-165 307-361 (590)
28 3fwk_A FMN adenylyltransferase 97.6 3.7E-05 1.3E-09 63.7 4.2 24 126-149 58-81 (308)
29 2dpl_A GMP synthetase, GMP syn 97.5 5.6E-05 1.9E-09 62.3 3.5 69 16-85 154-239 (308)
30 3dpi_A NAD+ synthetase; ssgcid 97.5 0.00017 5.7E-09 59.2 6.1 39 126-164 46-87 (285)
31 3sdb_A Glutamine-dependent NAD 97.4 0.00022 7.4E-09 64.8 6.0 58 108-165 343-401 (680)
32 1vbk_A Hypothetical protein PH 97.3 0.00024 8.2E-09 58.6 4.7 33 126-165 179-211 (307)
33 1q15_A CARA; CMPR, (2S,5S)-5-c 96.6 0.0018 6.2E-08 56.6 4.6 39 109-149 223-261 (503)
34 2ywb_A GMP synthase [glutamine 96.6 0.0017 5.8E-08 56.8 4.3 68 16-85 347-431 (503)
35 1jgt_A Beta-lactam synthetase; 96.5 0.0019 6.6E-08 56.6 4.2 39 109-149 226-264 (513)
36 1ct9_A Asparagine synthetase B 96.3 0.0036 1.2E-07 55.4 4.6 40 108-149 210-249 (553)
37 2c5s_A THII, probable thiamine 96.1 0.0044 1.5E-07 52.8 4.1 67 16-84 319-393 (413)
38 3ilv_A Glutamine-dependent NAD 95.8 0.0052 1.8E-07 55.2 3.3 23 125-147 302-324 (634)
39 2der_A TRNA-specific 2-thiouri 95.6 0.0033 1.1E-07 53.2 1.4 60 16-75 175-235 (380)
40 2hma_A Probable tRNA (5-methyl 95.5 0.0067 2.3E-07 51.2 2.7 58 16-75 167-227 (376)
41 1xng_A NH(3)-dependent NAD(+) 93.9 0.033 1.1E-06 44.4 3.0 61 15-83 148-209 (268)
42 4f4h_A Glutamine dependent NAD 93.7 0.046 1.6E-06 48.4 3.8 24 126-149 300-323 (565)
43 1kor_A Argininosuccinate synth 93.7 0.036 1.2E-06 47.1 3.0 61 17-77 136-203 (400)
44 3tqi_A GMP synthase [glutamine 93.6 0.04 1.4E-06 48.4 3.3 37 16-52 371-410 (527)
45 3uow_A GMP synthetase; structu 93.2 0.068 2.3E-06 47.3 4.1 40 16-55 400-442 (556)
46 1sur_A PAPS reductase; assimil 91.9 0.088 3E-06 40.2 2.7 27 16-42 174-200 (215)
47 3bl5_A Queuosine biosynthesis 91.8 0.11 3.8E-06 39.3 3.2 26 16-41 151-176 (219)
48 2e18_A NH(3)-dependent NAD(+) 90.6 0.1 3.6E-06 41.1 2.0 37 15-51 145-182 (257)
49 3k32_A Uncharacterized protein 90.5 0.23 7.7E-06 37.9 3.8 49 16-65 131-180 (203)
50 2pg3_A Queuosine biosynthesis 90.5 0.2 6.7E-06 38.7 3.5 34 16-49 154-191 (232)
51 2goy_A Adenosine phosphosulfat 90.1 0.23 7.7E-06 39.7 3.6 28 15-42 188-215 (275)
52 2o8v_A Phosphoadenosine phosph 90.0 0.2 6.8E-06 39.5 3.1 27 16-42 175-201 (252)
53 2nz2_A Argininosuccinate synth 87.5 0.35 1.2E-05 41.3 3.2 56 17-72 140-206 (413)
54 1k92_A Argininosuccinate synth 87.0 0.41 1.4E-05 41.5 3.3 36 17-52 150-193 (455)
55 1zun_A Sulfate adenylyltransfe 86.9 0.4 1.4E-05 39.4 3.1 27 16-42 198-224 (325)
56 2oq2_A Phosphoadenosine phosph 86.6 0.37 1.3E-05 38.1 2.7 29 16-44 180-208 (261)
57 2vxo_A GMP synthase [glutamine 86.1 0.47 1.6E-05 43.1 3.4 35 17-51 409-444 (697)
58 1gpm_A GMP synthetase, XMP ami 85.5 0.6 2E-05 40.8 3.7 36 16-51 369-405 (525)
59 3fg9_A Protein of universal st 84.8 1.1 3.8E-05 31.5 4.3 37 126-164 15-53 (156)
60 3dlo_A Universal stress protei 83.1 1.3 4.4E-05 31.6 4.0 36 127-164 25-61 (155)
61 2wsi_A FAD synthetase; transfe 82.4 0.39 1.3E-05 39.1 1.1 26 17-42 188-213 (306)
62 1qzu_A Hypothetical protein MD 78.9 1.7 5.9E-05 33.5 3.6 36 125-162 18-53 (206)
63 3cis_A Uncharacterized protein 77.1 3.7 0.00013 32.2 5.2 37 126-164 171-207 (309)
64 3p52_A NH(3)-dependent NAD(+) 76.8 2.3 7.8E-05 33.5 3.9 28 14-41 148-175 (249)
65 1e2b_A Enzyme IIB-cellobiose; 76.2 5.5 0.00019 27.1 5.3 35 127-163 4-38 (106)
66 3mt0_A Uncharacterized protein 76.2 5.7 0.00019 30.8 6.1 38 125-164 133-177 (290)
67 3loq_A Universal stress protei 73.7 4.5 0.00015 31.4 4.8 39 125-165 169-207 (294)
68 3nbm_A PTS system, lactose-spe 73.6 5.3 0.00018 27.5 4.7 37 125-161 5-41 (108)
69 3fiu_A NH(3)-dependent NAD(+) 72.2 6.8 0.00023 30.6 5.6 27 15-41 158-184 (249)
70 3ab8_A Putative uncharacterize 72.0 5.3 0.00018 30.4 4.8 39 125-165 153-191 (268)
71 3cis_A Uncharacterized protein 71.1 4.6 0.00016 31.7 4.4 38 125-164 18-55 (309)
72 1dv5_A APO-DCP, APO-D-alanyl c 70.2 2.2 7.5E-05 27.2 1.9 20 134-153 33-52 (80)
73 1or5_A Acyl carrier protein; A 63.2 4.6 0.00016 25.5 2.4 21 133-153 34-54 (83)
74 2l4b_A Acyl carrier protein; i 62.2 5.8 0.0002 25.4 2.8 21 133-153 39-59 (88)
75 1f80_D Acyl carrier protein; t 62.0 5.5 0.00019 24.8 2.6 21 133-153 35-55 (81)
76 3loq_A Universal stress protei 60.7 3.9 0.00013 31.8 2.0 37 126-164 22-58 (294)
77 1vl2_A Argininosuccinate synth 60.0 3.8 0.00013 35.0 2.0 36 17-52 149-192 (421)
78 2cnr_A FAS, ACP, acyl carrier 57.6 6.7 0.00023 24.4 2.4 20 134-153 36-55 (82)
79 1mvl_A PPC decarboxylase athal 57.3 8.8 0.0003 29.5 3.4 28 125-152 18-45 (209)
80 3olq_A Universal stress protei 56.3 15 0.00051 28.5 4.8 40 125-164 155-201 (319)
81 3gzm_A Acyl carrier protein; h 55.9 5.8 0.0002 24.9 1.9 20 134-153 34-53 (81)
82 1x3o_A Acyl carrier protein; s 55.7 6.6 0.00023 24.2 2.1 21 133-153 33-53 (80)
83 2lol_A ACP, acyl carrier prote 55.7 5.9 0.0002 24.7 1.9 20 134-153 35-54 (81)
84 1l0i_A Acyl carrier protein; a 55.4 6.1 0.00021 24.5 1.9 20 134-153 32-51 (78)
85 2ehs_A ACP, acyl carrier prote 54.9 6.9 0.00024 23.9 2.1 21 133-153 29-49 (77)
86 2qnw_A Acyl carrier protein; m 54.7 6.2 0.00021 24.8 1.9 20 134-153 36-55 (82)
87 2kw2_A Specialized acyl carrie 53.9 9.7 0.00033 25.3 2.9 23 134-158 32-54 (101)
88 2dnw_A Acyl carrier protein; A 53.6 8.9 0.0003 25.2 2.6 44 108-153 15-63 (99)
89 3lwd_A 6-phosphogluconolactona 53.4 19 0.00064 27.7 4.8 39 123-165 29-68 (226)
90 2amw_A Hypothetical protein NE 52.4 9.7 0.00033 24.0 2.6 19 135-153 34-53 (83)
91 3hn6_A Glucosamine-6-phosphate 52.0 34 0.0012 27.3 6.3 55 109-165 37-93 (289)
92 2kwl_A ACP, acyl carrier prote 51.7 6.3 0.00022 24.9 1.5 21 133-153 37-57 (84)
93 4dxe_H ACP, acyl carrier prote 51.6 9.9 0.00034 25.5 2.6 43 109-153 27-74 (101)
94 2nx2_A Hypothetical protein YP 50.8 23 0.00077 26.4 4.8 51 109-163 28-79 (181)
95 1af8_A Actinorhodin polyketide 50.8 5 0.00017 25.5 1.0 21 133-153 36-56 (86)
96 3eb9_A 6-phosphogluconolactona 50.3 19 0.00064 28.4 4.4 50 112-165 23-75 (266)
97 2kr5_A PKS, aflatoxin biosynth 49.8 11 0.00039 23.7 2.6 21 133-153 38-58 (89)
98 3css_A 6-phosphogluconolactona 49.4 18 0.0006 28.5 4.1 51 112-165 24-75 (267)
99 3ico_A 6PGL, 6-phosphogluconol 49.2 18 0.0006 28.7 4.1 39 125-165 53-92 (268)
100 3oc6_A 6-phosphogluconolactona 48.8 17 0.00057 28.4 3.9 38 126-165 38-76 (248)
101 2ava_A ACP I, acyl carrier pro 48.7 4.8 0.00016 25.3 0.6 42 109-153 5-52 (82)
102 1nq4_A Oxytetracycline polyket 48.6 9.1 0.00031 25.1 2.0 20 134-153 36-55 (95)
103 1klp_A ACP, ACPM, meromycolate 47.6 10 0.00036 25.7 2.2 20 134-153 36-55 (115)
104 3tx2_A Probable 6-phosphogluco 47.5 18 0.00062 28.2 3.9 38 126-165 38-76 (251)
105 3ejb_A Acyl carrier protein; p 47.4 8.7 0.0003 25.4 1.8 44 108-153 22-70 (97)
106 1vku_A Acyl carrier protein; T 46.2 9.8 0.00034 25.5 1.9 42 109-153 18-64 (100)
107 3e15_A Glucose-6-phosphate 1-d 45.9 9.3 0.00032 31.2 2.0 54 111-165 44-98 (312)
108 3czc_A RMPB; alpha/beta sandwi 45.9 43 0.0015 22.5 5.2 26 127-152 19-45 (110)
109 2jq4_A AGR_C_4658P, hypothetic 45.6 9.9 0.00034 25.6 1.9 43 108-153 22-71 (105)
110 3nwp_A 6-phosphogluconolactona 45.0 17 0.00058 28.1 3.3 38 124-165 34-72 (233)
111 2l2q_A PTS system, cellobiose- 42.9 27 0.00092 23.4 3.8 26 127-152 5-30 (109)
112 2kjs_A Putative acyl carrier p 42.1 13 0.00044 24.3 1.9 19 135-153 32-50 (87)
113 1tq8_A Hypothetical protein RV 41.7 29 0.00099 24.4 4.0 28 124-151 15-42 (163)
114 3g5j_A Putative ATP/GTP bindin 41.0 33 0.0011 22.9 4.0 27 123-149 85-113 (134)
115 2ju1_A Erythronolide synthase; 40.1 16 0.00055 23.3 2.2 21 133-153 48-68 (95)
116 2cg5_B Fatty acid synthase; tr 39.9 14 0.00049 24.5 1.9 42 109-153 11-54 (91)
117 3lhi_A Putative 6-phosphogluco 39.8 21 0.00072 27.5 3.1 37 125-165 32-69 (232)
118 2afd_A Protein ASL1650; twiste 39.5 13 0.00045 23.1 1.6 20 134-153 42-61 (88)
119 2liu_A CURA; holo state, trans 38.9 15 0.00051 23.5 1.9 20 134-153 49-68 (99)
120 1tvm_A PTS system, galactitol- 37.6 81 0.0028 21.2 5.6 26 127-152 22-48 (113)
121 2cgq_A Acyl carrier protein AC 36.5 19 0.00064 24.8 2.1 44 108-153 30-73 (113)
122 2kci_A Putative acyl carrier p 36.4 12 0.00042 24.5 1.1 19 135-153 32-50 (87)
123 3ce7_A Specific mitochodrial a 35.4 16 0.00056 24.6 1.6 46 108-153 19-71 (107)
124 1dny_A Non-ribosomal peptide s 35.2 22 0.00074 22.9 2.2 21 133-153 39-59 (91)
125 3ygs_P Procaspase 9; apoptosis 35.0 29 0.00099 23.0 2.8 31 53-83 51-81 (97)
126 2lki_A Putative uncharacterize 33.0 21 0.00071 24.1 1.9 19 135-153 56-75 (105)
127 4i4d_A Peptide synthetase NRPS 32.5 22 0.00076 22.9 1.9 20 134-153 42-61 (93)
128 1y89_A DEVB protein; structura 32.0 42 0.0014 25.6 3.7 40 126-165 28-68 (238)
129 3cvj_A Putative phosphoheptose 31.9 1.1E+02 0.0039 22.8 6.2 37 123-163 106-142 (243)
130 2lte_A Specialized acyl carrie 36.4 11 0.00037 25.4 0.0 21 133-153 53-73 (103)
131 2kng_A Protein LSR2; DNA-bindi 28.4 34 0.0012 20.8 2.0 17 28-44 15-31 (55)
132 1vkr_A Mannitol-specific PTS s 28.2 68 0.0023 22.2 4.0 26 127-152 14-40 (125)
133 2l22_A Mupirocin didomain acyl 28.1 35 0.0012 25.3 2.6 20 134-153 54-73 (212)
134 3kkq_A RAS-related protein M-R 27.8 94 0.0032 21.3 4.8 41 25-65 140-180 (183)
135 1fs5_A Glucosamine-6-phosphate 27.8 1.4E+02 0.0048 22.8 6.2 41 125-165 31-72 (266)
136 3foj_A Uncharacterized protein 27.5 87 0.003 19.9 4.2 27 123-149 53-79 (100)
137 3eme_A Rhodanese-like domain p 27.0 95 0.0032 19.8 4.4 27 123-149 53-79 (103)
138 3gk5_A Uncharacterized rhodane 26.8 1E+02 0.0034 20.1 4.5 27 123-149 52-78 (108)
139 2xvc_A ESCRT-III, SSO0910; cel 26.8 21 0.00072 22.0 0.9 44 25-68 9-52 (59)
140 3crd_A Raidd; caspase recruitm 25.9 41 0.0014 22.2 2.4 32 51-82 47-78 (100)
141 2jtq_A Phage shock protein E; 25.9 1.1E+02 0.0038 18.6 4.5 26 124-149 39-64 (85)
142 3tla_A MCCF; serine protease, 25.7 67 0.0023 26.6 4.1 47 111-160 28-78 (371)
143 1fh1_A NODF, nodulation protei 25.4 9.3 0.00032 24.8 -1.0 25 133-159 39-63 (92)
144 1p3q_Q VPS9P, vacuolar protein 25.3 78 0.0027 19.0 3.3 31 54-84 8-38 (54)
145 3flh_A Uncharacterized protein 25.2 1.5E+02 0.0052 19.6 6.5 27 123-149 68-96 (124)
146 2p1h_A APAF-1, apoptotic prote 24.9 42 0.0014 21.7 2.2 56 29-84 25-81 (94)
147 3trj_A Phosphoheptose isomeras 24.7 1.1E+02 0.0038 22.4 4.9 37 123-163 112-148 (201)
148 1uj2_A Uridine-cytidine kinase 24.6 74 0.0025 23.9 4.0 25 124-148 18-44 (252)
149 3etn_A Putative phosphosugar i 24.6 1.3E+02 0.0043 22.4 5.2 37 123-163 104-142 (220)
150 2bkx_A Glucosamine-6-phosphate 24.2 70 0.0024 24.1 3.7 40 126-165 27-67 (242)
151 1wv9_A Rhodanese homolog TT165 24.2 1.2E+02 0.004 19.0 4.3 26 123-149 51-76 (94)
152 3fwk_A FMN adenylyltransferase 23.8 49 0.0017 26.9 2.8 27 16-42 190-216 (308)
153 2atv_A RERG, RAS-like estrogen 23.8 1.3E+02 0.0044 21.1 5.0 43 25-67 149-191 (196)
154 1vdd_A Recombination protein R 23.6 53 0.0018 25.6 2.9 27 125-151 133-159 (228)
155 2lju_A Putative oxidoreductase 23.6 37 0.0013 23.4 1.8 31 14-45 56-86 (108)
156 2jya_A AGR_C_3324P, uncharacte 22.9 35 0.0012 23.5 1.5 32 14-46 48-79 (106)
157 2qv6_A MJ0145, GTP cyclohydrol 22.6 2.2E+02 0.0074 22.6 6.4 53 109-161 34-88 (268)
158 3tqc_A Pantothenate kinase; bi 22.4 1.1E+02 0.0037 24.7 4.7 41 125-165 89-131 (321)
159 3sho_A Transcriptional regulat 22.0 1.6E+02 0.0056 20.6 5.2 37 123-163 85-121 (187)
160 2x43_S Sherp; membrane protein 21.3 19 0.00066 22.4 -0.1 9 133-141 53-61 (67)
161 1vl1_A 6PGL, 6-phosphogluconol 21.3 77 0.0026 24.2 3.4 36 126-165 44-80 (232)
162 1s3a_A NADH-ubiquinone oxidore 21.2 55 0.0019 21.8 2.3 31 45-75 25-57 (102)
163 1ycy_A Conserved hypothetical 21.1 74 0.0025 19.9 2.6 21 112-136 6-26 (71)
164 3rpf_C Molybdopterin convertin 21.0 48 0.0016 20.4 1.8 15 122-136 58-74 (74)
165 1m3s_A Hypothetical protein YC 20.7 1.5E+02 0.0051 20.9 4.8 37 123-163 77-113 (186)
166 2xhz_A KDSD, YRBH, arabinose 5 20.4 1.5E+02 0.0051 20.8 4.7 37 123-163 94-130 (183)
167 2cu3_A Unknown function protei 20.3 45 0.0015 20.0 1.5 14 123-136 49-64 (64)
168 1vim_A Hypothetical protein AF 20.1 1.5E+02 0.0052 21.4 4.8 37 123-163 87-123 (200)
No 1
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=99.36 E-value=6.6e-13 Score=110.17 Aligned_cols=61 Identities=28% Similarity=0.317 Sum_probs=55.4
Q ss_pred ccchhhhhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCcc-EEEEEeC
Q psy16399 103 ECFFHAFELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLD-LVLLSID 165 (165)
Q Consensus 103 ~C~~~~~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~-l~~~~vd 165 (165)
.|.+..+.++|.+++++++++.++++|+||+|||+||++||+++.++++. .+++ +.++|||
T Consensus 1 ~~~~~~~~~~~~~~i~~~~l~~~~~~vlva~SGG~DS~~Ll~ll~~~~~~--~g~~~v~av~vd 62 (317)
T 1wy5_A 1 MNPESRVIRKVLALQNDEKIFSGERRVLIAFSGGVDSVVLTDVLLKLKNY--FSLKEVALAHFN 62 (317)
T ss_dssp CCHHHHHHHHHHHHHHHHCSCSSCCEEEEECCSSHHHHHHHHHHHHSTTT--TTCSEEEEEEEE
T ss_pred CccHHHHHHHHHHHHHHcCCCCCCCEEEEEecchHHHHHHHHHHHHHHHH--cCCCEEEEEEEE
Confidence 37778899999999999999999999999999999999999999988655 5788 9999997
No 2
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=99.26 E-value=3.7e-12 Score=110.88 Aligned_cols=54 Identities=24% Similarity=0.421 Sum_probs=49.9
Q ss_pred hHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 110 ELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 110 ~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
.++|.++|++++|+.++++|+||+|||+||++||++|.+++++ .++++.++|||
T Consensus 2 ~~kv~~~i~~~~l~~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~--~~~~v~avhvd 55 (464)
T 3a2k_A 2 IDKVRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSLRDE--WKLQVIAAHVD 55 (464)
T ss_dssp CSHHHHHHHHTCSSSCSSBEEEECCSSHHHHHHHHHHHHHHHT--TTCBCEEEEEE
T ss_pred hHHHHHHHHHcCCCCCCCEEEEEEcCcHHHHHHHHHHHHHHHH--cCCeEEEEEEE
Confidence 4689999999999999999999999999999999999998766 57899999997
No 3
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=98.95 E-value=9.5e-10 Score=85.98 Aligned_cols=46 Identities=15% Similarity=0.176 Sum_probs=37.9
Q ss_pred hhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 109 FELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 109 ~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
....+.+.++++ +++|+||+|||+||+||||++.++ +.++.++|+|
T Consensus 32 ~~~~l~~~~~~~-----~~~v~Va~SGGkDS~vLL~ll~~~------~~~v~~v~vd 77 (215)
T 1sur_A 32 AEGRVAWALDNL-----PGEYVLSSSFGIQAAVSLHLVNQI------RPDIPVILTD 77 (215)
T ss_dssp HHHHHHHHHHHC-----CSEEEEECCCCTTHHHHHHHHHHH------STTCEEEEEE
T ss_pred HHHHHHHHHHHc-----CCCEEEEecCCHHHHHHHHHHHHh------CCCCeEEEee
Confidence 445677777775 579999999999999999999987 2468899986
No 4
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=98.81 E-value=2.3e-09 Score=94.68 Aligned_cols=62 Identities=23% Similarity=0.253 Sum_probs=48.9
Q ss_pred ccccccchhhhhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 99 TLCKECFFHAFELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 99 ~iCk~C~~~~~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
.+|+....|.+++.+.+.+++.+..-++++|+||+|||+||++||+++++. .+.++.++|||
T Consensus 203 ~i~~~~~~w~~~~~~~~~i~~i~~~v~~~kvlvalSGGvDSsvla~ll~~~-----~G~~v~av~vd 264 (527)
T 3tqi_A 203 HICQCIPNWTTKHIIEDSIRDIQEKVGKEQVIVGLSGGVDSAVTATLVHKA-----IGDQLVCVLVD 264 (527)
T ss_dssp TTSCCCCCCCSHHHHHHHHHHHHHHHTTSCEEEECTTTHHHHHHHHHHHHH-----HGGGEEEEEEC
T ss_pred hcccccchhhHHHHHHHHHHHHHHhcCCCeEEEEEecCcCHHHHHHHHHHH-----hCCeEEEEEec
Confidence 578777777776766666665443345689999999999999999999876 36789999997
No 5
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=98.64 E-value=2.9e-08 Score=79.74 Aligned_cols=45 Identities=16% Similarity=0.206 Sum_probs=36.1
Q ss_pred hHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 110 ELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 110 ~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
...+...++++ +++|+||+|||+||+|||+++.++. .++.++|+|
T Consensus 34 ~~~l~~a~~~~-----~~~v~va~SGG~DS~vLL~ll~~~~------~~v~vv~id 78 (252)
T 2o8v_A 34 EGRVAWALDNL-----PGEYVLSSSFGIQAAVSLHLVNQIR------PDIPVILTD 78 (252)
T ss_dssp HHHHHHHHTTS-----CSCEEEECCCSTTHHHHHHHHHHHS------TTCEEEECC
T ss_pred HHHHHHHHHHc-----CCCEEEEeCCCHHHHHHHHHHHHhC------CCCeEEEec
Confidence 44566666664 5789999999999999999999873 457888887
No 6
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=98.63 E-value=1.8e-08 Score=88.37 Aligned_cols=60 Identities=25% Similarity=0.245 Sum_probs=41.6
Q ss_pred cccccchhhhhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 100 LCKECFFHAFELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 100 iCk~C~~~~~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
+|+....|...+.+.+.++..+-.-.+++++||+|||+||+++|+++++. +.++.++|+|
T Consensus 183 ~~~~~~~~~~~~~~~~~i~~ir~~~~~~kvvvalSGGvDSsvla~ll~~~------g~~v~av~vd 242 (503)
T 2ywb_A 183 LAGVKRDWTPEHVLEELLREVRERAGKDRVLLAVSGGVDSSTLALLLAKA------GVDHLAVFVD 242 (503)
T ss_dssp HTTCCCCCCHHHHHHHHHHHHHHHHTTSEEEEEECSSHHHHHHHHHHHHH------TCEEEEEEEE
T ss_pred HhhhhccccchhhhHHHHHhhhhhccCccEEEEecCCcchHHHHHHHHHc------CCeEEEEEEe
Confidence 56555555544444433333211124589999999999999999999876 5789999986
No 7
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=98.62 E-value=1.9e-08 Score=83.97 Aligned_cols=55 Identities=24% Similarity=0.214 Sum_probs=40.0
Q ss_pred hhhhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 107 HAFELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 107 ~~~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
..++....+.|+.. +...++++||+|||+||+||||++.++... .+.++.++|||
T Consensus 29 ~~le~~a~~ilr~~--~~~~~~ivVa~SGGkDS~vLL~Ll~~~~~~--~~~~i~vv~vD 83 (325)
T 1zun_A 29 KQLEAESIHIIREV--AAEFDNPVMLYSIGKDSAVMLHLARKAFFP--GKLPFPVMHVD 83 (325)
T ss_dssp HHHHHHHHHHHHHH--HHHCSSEEEECCSSHHHHHHHHHHHHHHTT--SCCSSCEEEEC
T ss_pred HHHHHHHHHHHHHH--HHhCCCEEEEEcChHHHHHHHHHHHHhccc--cCCCEEEEEEE
Confidence 34555555555542 333468999999999999999999987543 35678899987
No 8
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=98.56 E-value=6.1e-08 Score=77.79 Aligned_cols=50 Identities=22% Similarity=0.207 Sum_probs=41.2
Q ss_pred hhhhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCC-ccEEEEEeC
Q psy16399 107 HAFELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYG-LDLVLLSID 165 (165)
Q Consensus 107 ~~~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~-~~l~~~~vd 165 (165)
..+.+++.+.|+++ +.++++||+|||+||+++++++.+.- + .++.++|+|
T Consensus 7 ~~~~~~l~~~i~~~----~~~~vvv~lSGGiDSs~~~~l~~~~~-----g~~~v~av~~~ 57 (257)
T 2e18_A 7 DKVIERILEFIREK----GNNGVVIGISGGVDSATVAYLATKAL-----GKEKVLGLIMP 57 (257)
T ss_dssp HHHHHHHHHHHHHH----CTTCEEEECCSSHHHHHHHHHHHHHH-----CGGGEEEEECC
T ss_pred HHHHHHHHHHHHHh----CCCcEEEEecCCHHHHHHHHHHHHhc-----CCCcEEEEEeC
Confidence 34677888888887 56789999999999999999998652 3 578999886
No 9
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=98.52 E-value=7.5e-08 Score=85.60 Aligned_cols=62 Identities=23% Similarity=0.198 Sum_probs=45.3
Q ss_pred ccccccchhhhhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 99 TLCKECFFHAFELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 99 ~iCk~C~~~~~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
.+|++-..|.+++.+.+.++..+...++++|+||+|||+||+++++++++. .+.++.++|+|
T Consensus 228 ~i~g~~~~~~~~~~~~~~i~~ir~~g~~~~vvvalSGGvDSsv~a~ll~~~-----~G~~v~~v~vd 289 (556)
T 3uow_A 228 NICKCKKQFDPIRYHELELKNIEKYKHDHYVIAAMSGGIDSTVAAAYTHKI-----FKERFFGIFID 289 (556)
T ss_dssp TTTCCCC-CCHHHHHHHHHHHHGGGTTTCEEEEECCSSHHHHHHHHHHHHH-----HGGGEEEEEEE
T ss_pred HhhccccccccccccccceeeeeecCCCceEEEEcccCCCHHHHHHHHHHH-----hCCeEEEEEEe
Confidence 577755556666655555554433333789999999999999999999864 35789999986
No 10
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=98.50 E-value=1.2e-07 Score=76.55 Aligned_cols=47 Identities=30% Similarity=0.185 Sum_probs=36.6
Q ss_pred hHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 110 ELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 110 ~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
...++..++++ ++++||+|||+||+||||++.++... +.++.++|+|
T Consensus 31 ~~~l~~a~~~~------~~v~va~SGGkDS~vLL~ll~~~~~~---~~~i~vv~iD 77 (261)
T 2oq2_A 31 QEIIAWSIVTF------PHLFQTTAFGLTGLVTIDMLSKLSEK---YYMPELLFID 77 (261)
T ss_dssp HHHHHHHHHHC------SSEEEECCCCHHHHHHHHHHHHHTTT---SCCCEEEEEC
T ss_pred HHHHHHHHHHC------CCEEEEecCCHHHHHHHHHHHHhCcc---CCCeeEEEec
Confidence 34566666664 27999999999999999999988432 3568899987
No 11
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=98.48 E-value=1.8e-07 Score=77.28 Aligned_cols=68 Identities=21% Similarity=0.251 Sum_probs=63.8
Q ss_pred ceeeccCCCCHHHHHHHHHHcCCcceeCCCCCCCCcchHHHHH-HHHHHHHhCCchhhHHHHHhhhccc
Q psy16399 18 PRCKPLKYAYEKEIVMYAYYKKLVYFSTECIFAPNAYRGHART-FLKHLEKIRPASIMDIIHSESKYIE 85 (165)
Q Consensus 18 ~~IRPL~~v~E~ei~~ya~~~~lp~~~~~CP~~~~~~R~~~k~-~l~~le~~~P~~k~~i~~a~~~~~~ 85 (165)
.+||||..++++||..||..+|+|+..++|+.+....|..+|. ++..|++.+|++..+++++..+...
T Consensus 164 ~iirPLl~~~k~eI~~~~~~~gl~~~~d~sn~~~~~~Rn~iR~~~lp~L~~~~p~~~~~l~~~~~~~~~ 232 (317)
T 1wy5_A 164 VIRRPLYYVKRSEIEEYAKFKGLRWVEDETNYEVSIPRNRIRHRVIPELKRINENLEDTFLKMVKVLRA 232 (317)
T ss_dssp TEECTTTTCCHHHHHHHHHHTTCCCCCCGGGGTCCHHHHHHHHTHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred eEECCCccCCHHHHHHHHHHcCCCeeECCCCCCCccHHHHHHHHHHHHHHHHCccHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999996 8899999999999999999877764
No 12
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=98.48 E-value=1.9e-07 Score=80.57 Aligned_cols=70 Identities=19% Similarity=0.134 Sum_probs=65.3
Q ss_pred CcceeeccCCCCHHHHHHHHHHcCCcceeCCCCCCCCcchHHHH-HHHHHHHHhCCchhhHHHHHhhhccc
Q psy16399 16 SIPRCKPLKYAYEKEIVMYAYYKKLVYFSTECIFAPNAYRGHAR-TFLKHLEKIRPASIMDIIHSESKYIE 85 (165)
Q Consensus 16 ~v~~IRPL~~v~E~ei~~ya~~~~lp~~~~~CP~~~~~~R~~~k-~~l~~le~~~P~~k~~i~~a~~~~~~ 85 (165)
.+++||||..++++||..||..+|+|+..++|+++....|..+| +++..|++.+|++..++.++......
T Consensus 149 ~~~iiRPLl~~~k~eI~~y~~~~gl~~~~D~sn~~~~~~Rn~iR~~~lp~L~~~~p~~~~~l~r~~~~~~~ 219 (433)
T 1ni5_A 149 GTRLIRPLLARTRGELVQWARQYDLRWIEDESNQDDSYDRNFLRLRVVPLLQQRWPHFAEATARSAALCAE 219 (433)
T ss_dssp TEEEECGGGSCCHHHHHHHHHHTTCCCBCCCCGGGTTSHHHHHHHTHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred CceEEccCccCCHHHHHHHHHHcCCCeEECCCCCCcccchHHHHHHHHHHHHHHCchHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999 89999999999999999999877663
No 13
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=98.43 E-value=2.7e-07 Score=76.30 Aligned_cols=40 Identities=28% Similarity=0.246 Sum_probs=30.7
Q ss_pred CCEEEEEecCCccHHHHHHHHHHH-hhhc---------------cCCccEEEEEeC
Q psy16399 126 HHRIAIAASGGKDSTVLAHVLKVL-NEKY---------------QYGLDLVLLSID 165 (165)
Q Consensus 126 ~~~vlvavSGG~DS~~Ll~ll~~l-~~~~---------------~~~~~l~~~~vd 165 (165)
+++|+||+||||||+||||++.+. .+.. ..+.++.++|+|
T Consensus 53 ~~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iD 108 (306)
T 2wsi_A 53 NGEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFID 108 (306)
T ss_dssp SSSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECC
T ss_pred cCCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEe
Confidence 478999999999999999999875 2110 014568899987
No 14
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=98.42 E-value=1.7e-07 Score=85.38 Aligned_cols=59 Identities=19% Similarity=0.195 Sum_probs=44.6
Q ss_pred ccccccchhhhhHHH---HHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCC-ccEEEEEeC
Q psy16399 99 TLCKECFFHAFELEI---HHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYG-LDLVLLSID 165 (165)
Q Consensus 99 ~iCk~C~~~~~~~~v---~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~-~~l~~~~vd 165 (165)
++|+....|...+.+ .+.|+++ + .++++++|+|||+||+++++++++. .+ .++.++|+|
T Consensus 213 ~i~~~~~~~~~~~~~~~~i~~Ir~~--v-~~~~vvv~lSGGvDSsVla~Ll~~a-----lG~~~V~aV~vd 275 (697)
T 2vxo_A 213 DIAGCSGTFTVQNRELECIREIKER--V-GTSKVLVLLSGGVDSTVCTALLNRA-----LNQEQVIAVHID 275 (697)
T ss_dssp TTTCCCSCCCHHHHHHHHHHHHHHH--H-TTCEEEEECCSSHHHHHHHHHHHHH-----SCGGGEEEEEEE
T ss_pred ccccccccchhhHHHHHHHHHHHHH--h-cccceEEEccCchHHHHHHHHHHHh-----cCCceEEEEEec
Confidence 577766666655444 4455554 3 4579999999999999999999865 45 789999986
No 15
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=98.42 E-value=1.3e-07 Score=83.42 Aligned_cols=59 Identities=24% Similarity=0.312 Sum_probs=41.9
Q ss_pred ccccccchhhhhHHH---HHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 99 TLCKECFFHAFELEI---HHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 99 ~iCk~C~~~~~~~~v---~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
.+|++-..|...+.+ .+.|+++ + .+++++||+|||+||+++++++++. .+.++.++|+|
T Consensus 200 ~i~~~~~~~~~~~~~~~~~~~ir~~--v-~~~~vvvalSGGvDSsv~a~ll~~a-----~G~~v~av~v~ 261 (525)
T 1gpm_A 200 DICQCEALWTPAKIIDDAVARIREQ--V-GDDKVILGLSGGVDSSVTAMLLHRA-----IGKNLTCVFVD 261 (525)
T ss_dssp TTSCCCCCCCHHHHHHHHHHHHHHH--H-TTCEEEEECCSSHHHHHHHHHHHHH-----HGGGEEEEEEE
T ss_pred hhhhccccchHHHHHHhhhhhhhhh--h-cccceEEEecCCCCHHHHHHHHHHH-----hCCCEEEEEEe
Confidence 466655555444433 3444543 3 3479999999999999999999864 25779999986
No 16
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=98.40 E-value=2.8e-07 Score=74.12 Aligned_cols=52 Identities=17% Similarity=0.204 Sum_probs=38.0
Q ss_pred hhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 109 FELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 109 ~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
+.+.+...|+++---...++++||+|||+||+++++++.+. .+.++.++|+|
T Consensus 9 ~~~~l~~~l~d~v~~~g~~~vvv~lSGGiDSsv~a~l~~~~-----~g~~v~av~~~ 60 (249)
T 3p52_A 9 ITEKMCDFIQEKVKNSQSQGVVLGLSGGIDSALVATLCKRA-----LKENVFALLMP 60 (249)
T ss_dssp HHHHHHHHHHHHHHTSSCSEEEEECCSSHHHHHHHHHHHHH-----HTTSEEEEECC
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHHHHH-----cCCcEEEEEec
Confidence 44555555555411123579999999999999999999875 25779999875
No 17
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=98.39 E-value=2.1e-07 Score=75.23 Aligned_cols=52 Identities=13% Similarity=0.121 Sum_probs=38.5
Q ss_pred hhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 109 FELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 109 ~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
+.+++...|+++-.....++++||+|||+||+++++++.+.. +.++.++|+|
T Consensus 8 ~~~~l~~~l~~~v~~~~~~~vvv~lSGGiDSsv~~~l~~~~~-----~~~v~av~~~ 59 (268)
T 1xng_A 8 LIVYLCDFLEKEVQKRGFKKVVYGLSGGLDSAVVGVLCQKVF-----KENAHALLMP 59 (268)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEECCSSHHHHHHHHHHHHHH-----GGGEEEEECC
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEccCcHHHHHHHHHHHHhC-----CCCEEEEEeC
Confidence 445556666665222346789999999999999999998762 3568888875
No 18
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=98.38 E-value=1.8e-07 Score=80.19 Aligned_cols=36 Identities=22% Similarity=0.270 Sum_probs=31.6
Q ss_pred CCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 124 EKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 124 ~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
..+++++||+|||+||+++++++.+. |+++.++|+|
T Consensus 185 ~~~~kvlvalSGGvDS~vll~ll~~~------G~~v~av~v~ 220 (413)
T 2c5s_A 185 GVGGKVMVLLSGGIDSPVAAYLTMKR------GVSVEAVHFH 220 (413)
T ss_dssp TTTEEEEEECCSSSHHHHHHHHHHHB------TEEEEEEEEE
T ss_pred CCCCeEEEEeCCCChHHHHHHHHHHc------CCcEEEEEEe
Confidence 34789999999999999999999763 7889999986
No 19
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=98.36 E-value=7.1e-07 Score=77.51 Aligned_cols=69 Identities=14% Similarity=0.009 Sum_probs=64.6
Q ss_pred cceeeccCCCCHHHHHHHHHHcCCcceeCCCCCCCCcchHHHH-HHHHHHHHhCCchhhHHHHHhhhccc
Q psy16399 17 IPRCKPLKYAYEKEIVMYAYYKKLVYFSTECIFAPNAYRGHAR-TFLKHLEKIRPASIMDIIHSESKYIE 85 (165)
Q Consensus 17 v~~IRPL~~v~E~ei~~ya~~~~lp~~~~~CP~~~~~~R~~~k-~~l~~le~~~P~~k~~i~~a~~~~~~ 85 (165)
..+||||..++++||..||..+|+|+..++|+++....|..+| +++..|++.+|++..++.++..+...
T Consensus 161 ~~iiRPLl~~~k~eI~~ya~~~gl~~~~d~sn~~~~~~Rn~iR~~~lp~L~~~~p~~~~~l~r~a~~~~~ 230 (464)
T 3a2k_A 161 GYLIRPFLAVSRAEIEAYCRQMGLSPRCDPSNEKDDYTRNRFRHHIVPLLRQENPRLHERFQQYSEMMAE 230 (464)
T ss_dssp SEEECGGGGSCHHHHHHHHHHTCCSSCSCTTCCCTTSHHHHHHHTHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred CEEECCCccCcHHHHHHHHHHcCCCeEECCCCCCccchHHHHHHHHHHHHHHHCchHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999998 69999999999999999999877664
No 20
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=98.21 E-value=9.7e-07 Score=71.68 Aligned_cols=44 Identities=18% Similarity=0.214 Sum_probs=35.1
Q ss_pred hHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 110 ELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 110 ~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
...++..++++ |++|+||+| |+||+||||++.++ +.++.++|+|
T Consensus 43 ~~~l~~a~~~~-----g~~i~Va~S-GkDS~vLL~Ll~~~------~~~i~vv~iD 86 (275)
T 2goy_A 43 QDILKAAFEHF-----GDELWISFS-GAEDVVLVDMAWKL------NRNVKVFSLD 86 (275)
T ss_dssp HHHHHHHHHHH-----STTEEEECC-SSTTHHHHHHHHHH------CTTCCEEEEC
T ss_pred HHHHHHHHHHc-----CCCEEEEee-cHHHHHHHHHHHHh------CCCceEEEEe
Confidence 44566666664 578999999 99999999999887 3457888887
No 21
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}
Probab=98.17 E-value=2.2e-06 Score=68.84 Aligned_cols=51 Identities=20% Similarity=0.193 Sum_probs=34.7
Q ss_pred hhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 109 FELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 109 ~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
..+++...|+++-.-...++|+||+|||+||+++++++.+.- .+..++|++
T Consensus 12 ~~~~l~~~l~~~v~~~~~~~vvv~lSGGiDSsv~a~l~~~~~------~~~~av~~~ 62 (249)
T 3fiu_A 12 YSQKLVNWLSDSCMNYPAEGFVIGLSGGIDSAVAASLAVKTG------LPTTALILP 62 (249)
T ss_dssp HHHHHHHHHHHHHHTTTCSEEEEECCSSHHHHHHHHHHHHTT------SCEEEEECC
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHHHHhC------CCCEEEEec
Confidence 344555555555212345799999999999999999998651 233477765
No 22
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=98.07 E-value=2e-06 Score=71.06 Aligned_cols=24 Identities=33% Similarity=0.364 Sum_probs=22.4
Q ss_pred CCEEEEEecCCccHHHHHHHHHHH
Q psy16399 126 HHRIAIAASGGKDSTVLAHVLKVL 149 (165)
Q Consensus 126 ~~~vlvavSGG~DS~~Ll~ll~~l 149 (165)
+++|+||+|||+||++||+++++.
T Consensus 20 ~~kvlvalSGGvDSsvla~ll~~~ 43 (308)
T 2dpl_A 20 DSKAIIALSGGVDSSTAAVLAHKA 43 (308)
T ss_dssp TSCEEEECCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeChHHHHHHHHHHHHh
Confidence 579999999999999999999876
No 23
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=97.83 E-value=6.7e-06 Score=69.88 Aligned_cols=28 Identities=32% Similarity=0.484 Sum_probs=22.4
Q ss_pred ccCCCCEEEEEecCCccHHHHHHHHHHH
Q psy16399 122 LFEKHHRIAIAASGGKDSTVLAHVLKVL 149 (165)
Q Consensus 122 ~~~~~~~vlvavSGG~DS~~Ll~ll~~l 149 (165)
|-.++++|+||+|||+||+++|++|.+.
T Consensus 13 ~~~~~~kVvVa~SGGvDSsv~a~lL~~~ 40 (380)
T 2der_A 13 MSETAKKVIVGMSGGVDSSVSAWLLQQQ 40 (380)
T ss_dssp ----CCEEEEECCSCSTTHHHHHHHHTT
T ss_pred CCCCCCEEEEEEEChHHHHHHHHHHHHc
Confidence 4456789999999999999999999864
No 24
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0
Probab=97.79 E-value=2.2e-05 Score=64.16 Aligned_cols=53 Identities=15% Similarity=0.238 Sum_probs=34.8
Q ss_pred hhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhc-----cCCccEEEEEeC
Q psy16399 109 FELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKY-----QYGLDLVLLSID 165 (165)
Q Consensus 109 ~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~-----~~~~~l~~~~vd 165 (165)
+...+++.+++.+ -++++||+|||+||++++.++++..+.. +.+.++.+++++
T Consensus 27 ~v~~L~d~l~~~g----~~~vvvglSGGvDSal~a~l~~~A~~~Lg~~~~~~~~~v~av~~p 84 (279)
T 3q4g_A 27 RVAFIKRKLTEAR----YKSLVLGISGGVDSTTCGRLAQLAVEELNQQHNTTEYQFIAVRLP 84 (279)
T ss_dssp HHHHHHHHHHHHT----CCEEEEECCSSHHHHHHHHHHHHHHHHHHHHTTCSCCEEEEEECC
T ss_pred HHHHHHHHHHHcC----CCCEEEEccCCHHHHHHHHHHHHHHHHhCcccccCCceEEEEEec
Confidence 3334444455542 3689999999999999999877542221 124578888753
No 25
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A
Probab=97.73 E-value=3.6e-05 Score=62.35 Aligned_cols=40 Identities=18% Similarity=0.328 Sum_probs=28.0
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHhhhccCC---ccEEEEEeC
Q psy16399 126 HHRIAIAASGGKDSTVLAHVLKVLNEKYQYG---LDLVLLSID 165 (165)
Q Consensus 126 ~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~---~~l~~~~vd 165 (165)
.++++||+|||+||+++++++++.-...+.+ .++.+++++
T Consensus 38 ~~~vvvgLSGGvDSsv~a~La~~a~~~lg~~~~~~~v~av~~~ 80 (271)
T 1kqp_A 38 AKGFVLGISGGQDSTLAGRLAQLAVESIREEGGDAQFIAVRLP 80 (271)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECC
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEeC
Confidence 3589999999999999999887653211001 467777653
No 26
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Probab=97.69 E-value=4.7e-05 Score=61.94 Aligned_cols=40 Identities=18% Similarity=0.375 Sum_probs=28.3
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHhhhcc-----CCccEEEEEeC
Q psy16399 126 HHRIAIAASGGKDSTVLAHVLKVLNEKYQ-----YGLDLVLLSID 165 (165)
Q Consensus 126 ~~~vlvavSGG~DS~~Ll~ll~~l~~~~~-----~~~~l~~~~vd 165 (165)
.++++||+|||+||++++.++++.-...+ .++++++++++
T Consensus 40 ~~~vvvglSGGvDSsv~a~L~~~a~~~lg~~~~~~~~~v~av~~~ 84 (275)
T 1wxi_A 40 IKSLVLGISGGQDSTLAGKLCQMAINELRLETGNESLQFIAVRLP 84 (275)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred CCCEEEECcCcHHHHHHHHHHHHHHHHhccccccccceEEEEEeC
Confidence 36899999999999999998876422100 03467777753
No 27
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=97.63 E-value=4.5e-05 Score=67.96 Aligned_cols=54 Identities=17% Similarity=0.143 Sum_probs=37.6
Q ss_pred hhhhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCC-ccEEEEEeC
Q psy16399 107 HAFELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYG-LDLVLLSID 165 (165)
Q Consensus 107 ~~~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~-~~l~~~~vd 165 (165)
..+.+.+...|+++---...++++||+|||+||++++.++.+. .| .++.+++++
T Consensus 307 ~~~~~~~~~~l~~~~~~~g~~~vvvglSGGvDSsv~a~la~~a-----lG~~~v~~v~m~ 361 (590)
T 3n05_A 307 EEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDA-----LGAQNVYGVSMP 361 (590)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCEEEECCSSHHHHHHHHHHHHH-----HCGGGEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHhCCCcEEEEcCCCHHHHHHHHHHHHH-----hCcccEEEEEEC
Confidence 3455566666666511123468999999999999999998754 23 568888764
No 28
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=97.63 E-value=3.7e-05 Score=63.75 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.7
Q ss_pred CCEEEEEecCCccHHHHHHHHHHH
Q psy16399 126 HHRIAIAASGGKDSTVLAHVLKVL 149 (165)
Q Consensus 126 ~~~vlvavSGG~DS~~Ll~ll~~l 149 (165)
++++.+++||||||+|||||+.+.
T Consensus 58 ~~~ialSfSGGKDStVLLhL~~ka 81 (308)
T 3fwk_A 58 NGEISFSYNGGKDCQVLLLLYLSC 81 (308)
T ss_dssp SSSEEEECCSSHHHHHHHHHHHHH
T ss_pred cCCEEEEecCChhHHHHHHHHHHH
Confidence 478999999999999999999864
No 29
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=97.49 E-value=5.6e-05 Score=62.30 Aligned_cols=69 Identities=13% Similarity=0.063 Sum_probs=54.3
Q ss_pred CcceeeccCCCCHHHHHHHHHHcCCcce-eCCCCCCC----------------CcchHHHHHHHHHHHHhCCchhhHHHH
Q psy16399 16 SIPRCKPLKYAYEKEIVMYAYYKKLVYF-STECIFAP----------------NAYRGHARTFLKHLEKIRPASIMDIIH 78 (165)
Q Consensus 16 ~v~~IRPL~~v~E~ei~~ya~~~~lp~~-~~~CP~~~----------------~~~R~~~k~~l~~le~~~P~~k~~i~~ 78 (165)
.+.+||||..++++||..||..+|+|+. ...||+.. ...|...+.+++++++.+|++... +.
T Consensus 154 ~~~virPL~~l~K~EI~~~a~~~glp~~i~~~~P~~~~~La~R~~g~~t~~~l~~~r~~~~~l~~~~~~~~~~~~~~-~~ 232 (308)
T 2dpl_A 154 NLKLIEPLRDLYKDEVRELAKFLGLPEKIYNRMPFPGPGLAVRVIGEVTPEKIRIVREANAIVEEEVERAGLRPWQA-FA 232 (308)
T ss_dssp CCEEECTTTTCCHHHHHHHHHHTTCCHHHHTCCCCCTTGGGGGBSSSCCHHHHHHHHHHHHHHHHHHHHTTCCCSEE-EE
T ss_pred CCeEEEEcccCCHHHHHHHHHHhCCCceeeecCCCCcccccccccCcccHHHHHHHHHHHHHHHHHHHHHhhcccee-eE
Confidence 4789999999999999999999999963 34455432 146677888999999999999554 77
Q ss_pred Hhhhccc
Q psy16399 79 SESKYIE 85 (165)
Q Consensus 79 a~~~~~~ 85 (165)
++.++..
T Consensus 233 ~l~~v~~ 239 (308)
T 2dpl_A 233 VLLGVKT 239 (308)
T ss_dssp EECCCCE
T ss_pred EecCcee
Confidence 7777663
No 30
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0
Probab=97.48 E-value=0.00017 Score=59.15 Aligned_cols=39 Identities=21% Similarity=0.373 Sum_probs=26.9
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHhhhcc-CCc--cEEEEEe
Q psy16399 126 HHRIAIAASGGKDSTVLAHVLKVLNEKYQ-YGL--DLVLLSI 164 (165)
Q Consensus 126 ~~~vlvavSGG~DS~~Ll~ll~~l~~~~~-~~~--~l~~~~v 164 (165)
-++++||+|||.||+++++++...-+..+ .+. ++++++.
T Consensus 46 ~~~vvvglSGGiDSal~a~La~~A~daLG~~~~~~~viav~~ 87 (285)
T 3dpi_A 46 LRACVLGISGGIDSSTAGRLAQLAVERLRASGYDARFVAMRL 87 (285)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEC
T ss_pred CCcEEEEccCChhHHHHHHHHHHHHHHhcccCcccEEEEEEc
Confidence 36899999999999999988875322211 122 5666654
No 31
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*
Probab=97.37 E-value=0.00022 Score=64.77 Aligned_cols=58 Identities=16% Similarity=0.041 Sum_probs=36.4
Q ss_pred hhhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccC-CccEEEEEeC
Q psy16399 108 AFELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQY-GLDLVLLSID 165 (165)
Q Consensus 108 ~~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~-~~~l~~~~vd 165 (165)
.+.+.+...|+++---...++++||+|||+||++++.++++.-+..+. +.++.+++++
T Consensus 343 ~~~~~~~~~l~~~l~~~g~~~vvvglSGGvDSsvaa~l~~~a~~~lg~~~~~v~~v~m~ 401 (680)
T 3sdb_A 343 EAYNIQVSGLEQRLRALDYPKVVIGVSGGLDSTHALIVATHAMDREGRPRSDILAFALP 401 (680)
T ss_dssp HHHHHHHHHHHHHHHHTTSCEEEEECCSSHHHHHHHHHHHHHHHHTTCCGGGEEEEECC
T ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEecCCccHHHHHHHHHHHHHHhCCCCceEEEEEEC
Confidence 344444444554411123468999999999999988888765444221 2568888764
No 32
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=97.27 E-value=0.00024 Score=58.55 Aligned_cols=33 Identities=12% Similarity=0.158 Sum_probs=29.2
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 126 HHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 126 ~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
+.+++|++|| .||+++++++.+. |.++.++|+|
T Consensus 179 ~~kvlvllSG-vDS~vaa~ll~~~------G~~v~~v~~~ 211 (307)
T 1vbk_A 179 EGRMIGILHD-ELSALAIFLMMKR------GVEVIPVYIG 211 (307)
T ss_dssp TCEEEEECSS-HHHHHHHHHHHHB------TCEEEEEEES
T ss_pred CCcEEEEEeC-CcHHHHHHHHHhC------CCeEEEEEEE
Confidence 4699999999 9999999998763 7899999986
No 33
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=96.58 E-value=0.0018 Score=56.59 Aligned_cols=39 Identities=15% Similarity=0.246 Sum_probs=29.1
Q ss_pred hhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHH
Q psy16399 109 FELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVL 149 (165)
Q Consensus 109 ~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l 149 (165)
+...+.+.+++. ...+.+|.+++|||.||++++.++++.
T Consensus 223 l~~~L~~aV~~r--l~sd~~v~v~LSGGlDSs~vaala~~~ 261 (503)
T 1q15_A 223 IDRYLNAPLEDL--APRFDTVGIPLSGGLDSSLVTALASRH 261 (503)
T ss_dssp HHHHHHHHHHHH--GGGCSEEEEECCSSHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHH--HhCCCcEEEECCCCHHHHHHHHHHHHh
Confidence 444555555553 345678999999999999999988754
No 34
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=96.57 E-value=0.0017 Score=56.78 Aligned_cols=68 Identities=10% Similarity=0.074 Sum_probs=50.4
Q ss_pred CcceeeccCCCCHHHHHHHHHHcCCcce-eCCCCCCC---------CcchHHHH-------HHHHHHHHhCCchhhHHHH
Q psy16399 16 SIPRCKPLKYAYEKEIVMYAYYKKLVYF-STECIFAP---------NAYRGHAR-------TFLKHLEKIRPASIMDIIH 78 (165)
Q Consensus 16 ~v~~IRPL~~v~E~ei~~ya~~~~lp~~-~~~CP~~~---------~~~R~~~k-------~~l~~le~~~P~~k~~i~~ 78 (165)
.+.+|+||..++++||..||+.+|+|.. ...||+.. ...+.+++ .+.++|++ |+...++++
T Consensus 347 ~~~ii~PL~~l~K~EVr~~a~~~glp~~i~~~~P~~~~~La~R~~g~~t~~~l~~~~~~d~~l~~~l~~--~~~~~~~~~ 424 (503)
T 2ywb_A 347 EFELLEPFRLLFKDEVRELALLLGLPDTLRLRHPFPGPGLAVRVLGEVTEERLEILRRADDIFTSLLRE--WGLYEKVAQ 424 (503)
T ss_dssp CCEEECTTTTCCHHHHHHHHHHTTCCHHHHSCCCCCTTGGGGGBSSCCCHHHHHHHHHHHHHHHHHHHH--HTCGGGSSE
T ss_pred cCceEehhhcCCHHHHHHHHHHcCCChhheecCCCCCcchhhhccccccHHHHHHHHHHHHHHHHHHHh--cccccccch
Confidence 4689999999999999999999999974 24455432 23445555 56666765 888888888
Q ss_pred Hhhhccc
Q psy16399 79 SESKYIE 85 (165)
Q Consensus 79 a~~~~~~ 85 (165)
++..+.+
T Consensus 425 ~~~~~~~ 431 (503)
T 2ywb_A 425 ALAVLTP 431 (503)
T ss_dssp EEEEEEE
T ss_pred heeeecC
Confidence 8766554
No 35
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=96.49 E-value=0.0019 Score=56.60 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=29.5
Q ss_pred hhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHH
Q psy16399 109 FELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVL 149 (165)
Q Consensus 109 ~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l 149 (165)
+...+.+.+++. +..+.+|.+++|||.||++++.++++.
T Consensus 226 l~~~L~~aV~~r--l~sd~~vgv~LSGGlDSS~vaala~~~ 264 (513)
T 1jgt_A 226 VRAALEKAVAQR--VTPGDTPLVVLSGGIDSSGVAACAHRA 264 (513)
T ss_dssp HHHHHHHHHHHH--SCTTCCCEEECCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HhCCCcEEEECCCcHHHHHHHHHHHHh
Confidence 444555555553 345668999999999999999999876
No 36
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=96.26 E-value=0.0036 Score=55.38 Aligned_cols=40 Identities=15% Similarity=0.329 Sum_probs=31.1
Q ss_pred hhhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHH
Q psy16399 108 AFELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVL 149 (165)
Q Consensus 108 ~~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l 149 (165)
.+...+.+.+++. +....+|.|++|||.||++++.++++.
T Consensus 210 ~lr~~L~~aV~~r--l~sdvpvgv~LSGGlDSS~iaala~~~ 249 (553)
T 1ct9_A 210 ELRQALEDSVKSH--LMSDVPYGVLLSGGLDSSIISAITKKY 249 (553)
T ss_dssp HHHHHHHHHHHHH--TCCSSCEEEECCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hcCCCceEEeCCCCccHHHHHHHHHHh
Confidence 4555666666664 345678999999999999999999876
No 37
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=96.07 E-value=0.0044 Score=52.85 Aligned_cols=67 Identities=16% Similarity=0.059 Sum_probs=43.6
Q ss_pred CcceeeccCCCCHHHHHHHHHHcCC-----cceeCCCCC--C-CCcchHHHHHHHHHHHHhCCchhhHHHHHhhhcc
Q psy16399 16 SIPRCKPLKYAYEKEIVMYAYYKKL-----VYFSTECIF--A-PNAYRGHARTFLKHLEKIRPASIMDIIHSESKYI 84 (165)
Q Consensus 16 ~v~~IRPL~~v~E~ei~~ya~~~~l-----p~~~~~CP~--~-~~~~R~~~k~~l~~le~~~P~~k~~i~~a~~~~~ 84 (165)
.++++|||..++++||+.||...|+ +...+.||+ . ....|.. .+.+.++|+.. ++...+-+|+.+..
T Consensus 319 ~~~virPL~~l~K~eI~~~a~~~Gl~~~~~~p~~~~c~~~~~~~~~t~~~-l~~l~~~E~~l-~~~~~~~~a~~~~~ 393 (413)
T 2c5s_A 319 NYPVIRPLITMDKLEIIKIAEEIGTYDISIRPYEDCCTVFTPASPATKPK-REKANRFEAKY-DFTPLIDEAVANKE 393 (413)
T ss_dssp CSCEECTTTTCCHHHHHHHHHHTTCHHHHTSCC--------------CCC-HHHHHHHHTTS-CCHHHHHHHHHHCE
T ss_pred CCEEEeccCCCCHHHHHHHHHHcCCCccccCCCCCCCeeeCCCCCchHHH-HHHHHHHHHhc-CHHHHHHHHHhcCE
Confidence 4789999999999999999999996 444556874 2 2234443 55666788776 67767778877755
No 38
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}
Probab=95.76 E-value=0.0052 Score=55.22 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=19.5
Q ss_pred CCCEEEEEecCCccHHHHHHHHH
Q psy16399 125 KHHRIAIAASGGKDSTVLAHVLK 147 (165)
Q Consensus 125 ~~~~vlvavSGG~DS~~Ll~ll~ 147 (165)
..++++||+|||.||++++.+++
T Consensus 302 g~~~vvlglSGGvDSsv~A~Lv~ 324 (634)
T 3ilv_A 302 RSKGFVLSLSGGADSSACAIMVA 324 (634)
T ss_dssp TCCSEEEECCSSHHHHHHHHHHH
T ss_pred CCCeEEEEccCCHHHHHHHHHHH
Confidence 34689999999999998888854
No 39
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=95.62 E-value=0.0033 Score=53.21 Aligned_cols=60 Identities=15% Similarity=0.016 Sum_probs=40.1
Q ss_pred CcceeeccCCCCHHHHHHHHHHcCCcceeCCCCCCCC-cchHHHHHHHHHHHHhCCchhhH
Q psy16399 16 SIPRCKPLKYAYEKEIVMYAYYKKLVYFSTECIFAPN-AYRGHARTFLKHLEKIRPASIMD 75 (165)
Q Consensus 16 ~v~~IRPL~~v~E~ei~~ya~~~~lp~~~~~CP~~~~-~~R~~~k~~l~~le~~~P~~k~~ 75 (165)
..++|+||..++++||+.||..+|||+..++.+.+.- ..+..++++|++++...||.+.+
T Consensus 175 l~~~i~PL~~~~K~eVr~~A~~~Gl~~~~kp~s~~~cf~~~~~~~~fL~~~~~~~pG~~vd 235 (380)
T 2der_A 175 IAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIIT 235 (380)
T ss_dssp HHHEECCGGGSCHHHHHHHHHHTTCC----------------CHHHHHHTTSCCCCCEEEE
T ss_pred cceeEccCCCCCHHHHHHHHHHcCCCCccCCCCCCccccCchHHHHHHHHhhhhCCCCEEe
Confidence 3689999999999999999999999976433222211 12337899999988888986544
No 40
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=95.47 E-value=0.0067 Score=51.19 Aligned_cols=58 Identities=16% Similarity=0.040 Sum_probs=44.4
Q ss_pred CcceeeccCCCCHHHHHHHHHHcCCcceeCCCCCCCC---cchHHHHHHHHHHHHhCCchhhH
Q psy16399 16 SIPRCKPLKYAYEKEIVMYAYYKKLVYFSTECIFAPN---AYRGHARTFLKHLEKIRPASIMD 75 (165)
Q Consensus 16 ~v~~IRPL~~v~E~ei~~ya~~~~lp~~~~~CP~~~~---~~R~~~k~~l~~le~~~P~~k~~ 75 (165)
..++|+||..++++||+.||+.+|||+.. ||.+.+ ..+..++++|++++...||...+
T Consensus 167 l~~~i~PL~~~~K~eVr~~A~~~gl~~~~--k~~s~~~cf~~~~~~~~fL~~~~~~~pG~~vd 227 (376)
T 2hma_A 167 LQKTMFPLGHLEKPEVRRLAEEAGLSTAK--KKDSTGICFIGEKNFKNFLSNYLPAQPGRMMT 227 (376)
T ss_dssp HTTEECTTTTCCHHHHHHHHHHTTCTTTT--CCCCCSCTTTTTSCHHHHHHTTSCCCCEEEEE
T ss_pred cCcEEecCcCCCHHHHHHHHHHcCCCccc--CCCCCCccccCchhHHHHHHHHhhcCCCCEEc
Confidence 36899999999999999999999999753 443322 12345799999888888986543
No 41
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=93.89 E-value=0.033 Score=44.39 Aligned_cols=61 Identities=11% Similarity=-0.031 Sum_probs=43.0
Q ss_pred CCcceeeccCCCCHHHHHHHHHHcCCcc-eeCCCCCCCCcchHHHHHHHHHHHHhCCchhhHHHHHhhhc
Q psy16399 15 DSIPRCKPLKYAYEKEIVMYAYYKKLVY-FSTECIFAPNAYRGHARTFLKHLEKIRPASIMDIIHSESKY 83 (165)
Q Consensus 15 ~~v~~IRPL~~v~E~ei~~ya~~~~lp~-~~~~CP~~~~~~R~~~k~~l~~le~~~P~~k~~i~~a~~~~ 83 (165)
+....|+||..++..||..||...|+|. +...||.+.-.. .+..++.+|+.+..+..+...
T Consensus 148 d~~~~i~PL~~l~K~ev~~la~~~gip~~i~~k~psa~l~~--------~q~de~~lg~~y~~ld~~l~~ 209 (268)
T 1xng_A 148 DLACAINPIGELFKTEVYELARRLNIPKKILNKPPSADLFV--------GQSDEKDLGYPYSVIDPLLKD 209 (268)
T ss_dssp TTCCSEETTTTSCHHHHHHHHHHTTCCHHHHTSCCCCCSST--------TCCHHHHHSSCHHHHHHHHHH
T ss_pred CCCeeEEecCCCCHHHHHHHHHHcCCcHHHhcCCCCcCcCC--------CCcchhhcCCCHHHHHHHHHH
Confidence 4568999999999999999999999996 567788765322 122333456666666555443
No 42
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Probab=93.71 E-value=0.046 Score=48.43 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=20.1
Q ss_pred CCEEEEEecCCccHHHHHHHHHHH
Q psy16399 126 HHRIAIAASGGKDSTVLAHVLKVL 149 (165)
Q Consensus 126 ~~~vlvavSGG~DS~~Ll~ll~~l 149 (165)
-.+++|++|||.||.+.+.+..+.
T Consensus 300 ~~~~vlglSGGiDSal~~~la~~a 323 (565)
T 4f4h_A 300 FPGAIIGLSGGVDSALVLAVAVDA 323 (565)
T ss_dssp CCCEEEECCSSHHHHHHHHHHHHH
T ss_pred CCcEEEecCCCccHHHHHHHHHHH
Confidence 467999999999999888876643
No 43
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=93.67 E-value=0.036 Score=47.14 Aligned_cols=61 Identities=16% Similarity=0.117 Sum_probs=42.2
Q ss_pred cceeeccCCC---CHHHHHHHHHHcCCcce-eCCCCCCCCcc---hHHHHHHHHHHHHhCCchhhHHH
Q psy16399 17 IPRCKPLKYA---YEKEIVMYAYYKKLVYF-STECIFAPNAY---RGHARTFLKHLEKIRPASIMDII 77 (165)
Q Consensus 17 v~~IRPL~~v---~E~ei~~ya~~~~lp~~-~~~CP~~~~~~---R~~~k~~l~~le~~~P~~k~~i~ 77 (165)
+++|+||... +++||..||..+|||+. ...|||+.+.. +..-..+|++++...|...+.+.
T Consensus 136 l~ii~PL~~~~~~tK~eI~~ya~~~gip~~~~~~~pys~d~nllg~s~e~~~Led~~~~~p~~~~~~~ 203 (400)
T 1kor_A 136 IKVIAPWREWSFQGRKEMIAYAEAHGIPVPVTQEKPYSMDANLLHISYEGGVLEDPWAEPPKGMFRMT 203 (400)
T ss_dssp CEEECGGGTCCCCSHHHHHHHHHHTTCCCC-----CCEEEECSSCEEEESGGGGCTTSCCCTTCCSSS
T ss_pred CEEEEeecccccCCHHHHHHHHHHcCCCcccCCCCCCcCcchhcccchhhhHHHhHHhcCCcccceee
Confidence 5889999999 99999999999999998 47899874421 22234566777766676654433
No 44
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=93.63 E-value=0.04 Score=48.37 Aligned_cols=37 Identities=11% Similarity=0.062 Sum_probs=31.2
Q ss_pred CcceeeccCCCCHHHHHHHHHHcCCcc---eeCCCCCCCC
Q psy16399 16 SIPRCKPLKYAYEKEIVMYAYYKKLVY---FSTECIFAPN 52 (165)
Q Consensus 16 ~v~~IRPL~~v~E~ei~~ya~~~~lp~---~~~~CP~~~~ 52 (165)
.+++||||..++.+||+.||+..|+|. ...+||+..-
T Consensus 371 ~~~iirPL~~l~K~EIr~~a~~lGlp~~~v~~~P~p~~~l 410 (527)
T 3tqi_A 371 ELKLIEPLRELFKDEVRKLGLELGLPADLIYRHPFPGPGL 410 (527)
T ss_dssp --CEECTTTTCCHHHHHHHHHHHTCCHHHHTCCCCCTTGG
T ss_pred cCccccchhcCCHHHHHHHHHHcCCChhhhccCCCCCCCc
Confidence 467999999999999999999999998 5678887643
No 45
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=93.20 E-value=0.068 Score=47.26 Aligned_cols=40 Identities=15% Similarity=0.114 Sum_probs=35.1
Q ss_pred CcceeeccCCCCHHHHHHHHHHcCCc---ceeCCCCCCCCcch
Q psy16399 16 SIPRCKPLKYAYEKEIVMYAYYKKLV---YFSTECIFAPNAYR 55 (165)
Q Consensus 16 ~v~~IRPL~~v~E~ei~~ya~~~~lp---~~~~~CP~~~~~~R 55 (165)
.+.+|+||..++.+||+.+|+..|+| +...+||+..-+.|
T Consensus 400 ~~~li~PL~~l~K~EVr~la~~lGlp~~~~~r~P~p~p~la~R 442 (556)
T 3uow_A 400 KFKLFEPFKYLFKDDVKTLSRELNLPEEITNRHPFPGPGLAIR 442 (556)
T ss_dssp CCEEECTTTTCCHHHHHHHHHTTTCCHHHHHCCCCCTTTTTTT
T ss_pred ccceEeecccCcHHHHHHHHHHcCCCHHHhCCCCCCCCCcccc
Confidence 46899999999999999999999999 66788998766655
No 46
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=91.91 E-value=0.088 Score=40.24 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=25.1
Q ss_pred CcceeeccCCCCHHHHHHHHHHcCCcc
Q psy16399 16 SIPRCKPLKYAYEKEIVMYAYYKKLVY 42 (165)
Q Consensus 16 ~v~~IRPL~~v~E~ei~~ya~~~~lp~ 42 (165)
...+||||...+++||..|+..+|+|+
T Consensus 174 ~~~~i~PLl~~t~~dI~~y~~~~~lp~ 200 (215)
T 1sur_A 174 GVFKVLPIIDWDNRTIYQYLQKHGLKY 200 (215)
T ss_dssp TEEEECTTTTCCHHHHHHHHHHHTCCC
T ss_pred CEEEEechHhCCHHHHHHHHHHhCCCC
Confidence 367899999999999999999999986
No 47
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=91.82 E-value=0.11 Score=39.27 Aligned_cols=26 Identities=15% Similarity=0.025 Sum_probs=24.1
Q ss_pred CcceeeccCCCCHHHHHHHHHHcCCc
Q psy16399 16 SIPRCKPLKYAYEKEIVMYAYYKKLV 41 (165)
Q Consensus 16 ~v~~IRPL~~v~E~ei~~ya~~~~lp 41 (165)
.+++||||..++++||..||..+|+|
T Consensus 151 ~~~ii~PL~~~~K~ei~~~a~~~glp 176 (219)
T 3bl5_A 151 PFVIHTPLMWLNKAETWKLADELGAL 176 (219)
T ss_dssp CCEEECTTTTCCHHHHHHHHHHTTCH
T ss_pred CeEEEeccccCCHHHHHHHHHHcCCC
Confidence 46889999999999999999999994
No 48
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=90.58 E-value=0.1 Score=41.09 Aligned_cols=37 Identities=16% Similarity=0.058 Sum_probs=30.4
Q ss_pred CCcceeeccCCCCHHHHHHHHHHcCCcc-eeCCCCCCC
Q psy16399 15 DSIPRCKPLKYAYEKEIVMYAYYKKLVY-FSTECIFAP 51 (165)
Q Consensus 15 ~~v~~IRPL~~v~E~ei~~ya~~~~lp~-~~~~CP~~~ 51 (165)
+....|+||..++..||..||+..|+|. +...+|.+.
T Consensus 145 ~~~~~i~Pl~~l~K~ev~~la~~~gip~~i~~~~ps~~ 182 (257)
T 2e18_A 145 DGASDYAPIINLYKTEVWEIAKRIGVPERIVKKKPSAG 182 (257)
T ss_dssp TTCSSBCTTTTSCHHHHHHHHHHHTCCHHHHHSCCCCC
T ss_pred CCccCEeecCCCcHHHHHHHHHHcCCCHHHhCCCCCCC
Confidence 3568999999999999999999999996 445566543
No 49
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=90.53 E-value=0.23 Score=37.85 Aligned_cols=49 Identities=18% Similarity=0.079 Sum_probs=34.1
Q ss_pred CcceeeccCCCCHHHHHHHHHHcCCcceeCCCCCC-CCcchHHHHHHHHHH
Q psy16399 16 SIPRCKPLKYAYEKEIVMYAYYKKLVYFSTECIFA-PNAYRGHARTFLKHL 65 (165)
Q Consensus 16 ~v~~IRPL~~v~E~ei~~ya~~~~lp~~~~~CP~~-~~~~R~~~k~~l~~l 65 (165)
.+++||||..++.+||..||... +++...+=--. ...++..+|++|..-
T Consensus 131 ~~~iirPLl~~~k~eI~~~a~~~-l~~~~~~sn~~~~~dy~~~~r~~l~~~ 180 (203)
T 3k32_A 131 NIQYITPLMGFGYKTLRHLASEF-FILEEIKSGTKLSSDYEAEIRHILKER 180 (203)
T ss_dssp TCEEECGGGGCCHHHHHHHHHHH-EEEEEECC------CTHHHHHHHHHHH
T ss_pred CCeEEeccCCCCHHHHHHHHHHh-CCcccCCCCCCCCCcHHHHHHHHHhhc
Confidence 36899999999999999999998 77765432221 224557777776653
No 50
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=90.49 E-value=0.2 Score=38.66 Aligned_cols=34 Identities=21% Similarity=0.176 Sum_probs=28.6
Q ss_pred CcceeeccCCCCHHHHHHHHHHcCC-cc---eeCCCCC
Q psy16399 16 SIPRCKPLKYAYEKEIVMYAYYKKL-VY---FSTECIF 49 (165)
Q Consensus 16 ~v~~IRPL~~v~E~ei~~ya~~~~l-p~---~~~~CP~ 49 (165)
.+++|+||..+++.||..||...|+ |+ .+..|..
T Consensus 154 ~~~i~~PL~~~~K~ei~~~a~~~gl~~~~~~~t~sC~~ 191 (232)
T 2pg3_A 154 DIRFETPLMWLNKAETWALADYYQQLDTVRYHTLTCYN 191 (232)
T ss_dssp CCEEECTTTTCCHHHHHHHHHHTTCHHHHHHHCCCCTT
T ss_pred CeEEEEecCCCCHHHHHHHHHHcCCCcccccccCCCcC
Confidence 4789999999999999999999999 74 3456654
No 51
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=90.13 E-value=0.23 Score=39.74 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=25.8
Q ss_pred CCcceeeccCCCCHHHHHHHHHHcCCcc
Q psy16399 15 DSIPRCKPLKYAYEKEIVMYAYYKKLVY 42 (165)
Q Consensus 15 ~~v~~IRPL~~v~E~ei~~ya~~~~lp~ 42 (165)
+.+.+|+||+..+++||..|+..+|||+
T Consensus 188 ~g~~~i~PL~~wt~~dV~~Yi~~~~lp~ 215 (275)
T 2goy_A 188 KPLYKFNPLSSMTSEEVWGYIRMLELPY 215 (275)
T ss_dssp SCCEEECTTTTCCHHHHHHHHHHTTCCC
T ss_pred CCeEEEechHhCCHHHHHHHHHHhCCCC
Confidence 3467999999999999999999999997
No 52
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=89.97 E-value=0.2 Score=39.52 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=25.4
Q ss_pred CcceeeccCCCCHHHHHHHHHHcCCcc
Q psy16399 16 SIPRCKPLKYAYEKEIVMYAYYKKLVY 42 (165)
Q Consensus 16 ~v~~IRPL~~v~E~ei~~ya~~~~lp~ 42 (165)
.+.+|+||...+++||..|+..+|+|+
T Consensus 175 ~~~~i~PL~~wt~~dV~~y~~~~~lp~ 201 (252)
T 2o8v_A 175 GVFKVLPIIDWDNRTIYQYLQKHGLKY 201 (252)
T ss_dssp SSEEECGGGSCCHHHHHHHHHHTTCCC
T ss_pred CeEEEechhhCCHHHHHHHHHHcCCCC
Confidence 467899999999999999999999997
No 53
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=87.48 E-value=0.35 Score=41.25 Aligned_cols=56 Identities=11% Similarity=0.105 Sum_probs=41.4
Q ss_pred cceeeccC------CC-CHHHHHHHHHHcCCccee-CCCCCCCCc--c-hHHHHHHHHHHHHhCCch
Q psy16399 17 IPRCKPLK------YA-YEKEIVMYAYYKKLVYFS-TECIFAPNA--Y-RGHARTFLKHLEKIRPAS 72 (165)
Q Consensus 17 v~~IRPL~------~v-~E~ei~~ya~~~~lp~~~-~~CP~~~~~--~-R~~~k~~l~~le~~~P~~ 72 (165)
+++|+||. .. +.+||+.||+.+|+|+.. ..|||+.+. . |..-..+|++++...|..
T Consensus 140 l~ii~Pl~d~~~ll~~~sK~EI~~yA~~~Gip~~~~~~~~~S~d~n~~g~s~e~~~Led~~~~~p~~ 206 (413)
T 2nz2_A 140 IKVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPKNPWSMDENLMHISYEAGILENPKNQAPPG 206 (413)
T ss_dssp CEEECGGGCHHHHTTCC-CHHHHHHHHHTTCCCCSSCCCSSCEEECSSCEEECSGGGGSTTSCCCGG
T ss_pred CceeccccchhhhccCCCHHHHHHHHHHcCCCeecCCCCCCCCChhhhhcchhhhhhhchhhcCchh
Confidence 68999999 77 999999999999999974 578886331 1 333455777777776654
No 54
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=87.02 E-value=0.41 Score=41.46 Aligned_cols=36 Identities=14% Similarity=0.130 Sum_probs=31.7
Q ss_pred cceeeccCC-------CCHHHHHHHHHHcCCccee-CCCCCCCC
Q psy16399 17 IPRCKPLKY-------AYEKEIVMYAYYKKLVYFS-TECIFAPN 52 (165)
Q Consensus 17 v~~IRPL~~-------v~E~ei~~ya~~~~lp~~~-~~CP~~~~ 52 (165)
+++|.|+.. .+.+||+.||+.+|||+.. ..|||+.+
T Consensus 150 l~viaPlr~~~ll~~~lsK~EI~~yA~~~GIp~~~t~~~pyS~d 193 (455)
T 1k92_A 150 LQIYKPWLDTDFIDELGGRHEMSEFMIACGFDYKMSVEKAYSTD 193 (455)
T ss_dssp CEEECGGGCHHHHHHSSSHHHHHHHHHHTTCCCCCCCCCSSEEE
T ss_pred CEEECeeccccccccCCCHHHHHHHHHHcCCCcccCCCCCCccC
Confidence 789999986 8999999999999999885 68999744
No 55
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=86.90 E-value=0.4 Score=39.44 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=24.9
Q ss_pred CcceeeccCCCCHHHHHHHHHHcCCcc
Q psy16399 16 SIPRCKPLKYAYEKEIVMYAYYKKLVY 42 (165)
Q Consensus 16 ~v~~IRPL~~v~E~ei~~ya~~~~lp~ 42 (165)
...+|+||...+++||..|+..+|||+
T Consensus 198 ~~~~i~PLl~wt~~dIw~Yi~~~~lp~ 224 (325)
T 1zun_A 198 ESIRVFPLSNWTELDIWQYIYLEGIPI 224 (325)
T ss_dssp CEEEECTTTTCCHHHHHHHHHHHTCCC
T ss_pred CeEEEEchhhCCHHHHHHHHHHhCCCc
Confidence 356799999999999999999999997
No 56
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=86.63 E-value=0.37 Score=38.13 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=26.2
Q ss_pred CcceeeccCCCCHHHHHHHHHHcCCccee
Q psy16399 16 SIPRCKPLKYAYEKEIVMYAYYKKLVYFS 44 (165)
Q Consensus 16 ~v~~IRPL~~v~E~ei~~ya~~~~lp~~~ 44 (165)
.+.+|+||...+++||..|+..+|+|+.+
T Consensus 180 ~~~ki~PL~~wt~~dV~~Yi~~~~lp~~p 208 (261)
T 2oq2_A 180 GILKINPLINWTFEQVKQYIDANNVPYNE 208 (261)
T ss_dssp TEEEECTTTTCCHHHHHHHHHHHTCCCCG
T ss_pred CeEEEechHhCCHHHHHHHHHHcCCCCCc
Confidence 46789999999999999999999999753
No 57
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=86.15 E-value=0.47 Score=43.08 Aligned_cols=35 Identities=17% Similarity=0.007 Sum_probs=31.8
Q ss_pred cceeeccCCCCHHHHHHHHHHcCCcce-eCCCCCCC
Q psy16399 17 IPRCKPLKYAYEKEIVMYAYYKKLVYF-STECIFAP 51 (165)
Q Consensus 17 v~~IRPL~~v~E~ei~~ya~~~~lp~~-~~~CP~~~ 51 (165)
...|+||..++.+||..||+..|+|.. ...||+++
T Consensus 409 ~~~i~PL~~L~K~EVr~la~~lGlP~~i~~r~Ps~g 444 (697)
T 2vxo_A 409 GKVIEPLKDFHKDEVRILGRELGLPEELVSRHPFPG 444 (697)
T ss_dssp TCEECGGGGSCHHHHHHHHHHTTCCHHHHTCCCCCT
T ss_pred CEEEEecccCCHHHHHHHHHHcCCCcceeeCCCCCC
Confidence 579999999999999999999999984 58899875
No 58
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=85.50 E-value=0.6 Score=40.78 Aligned_cols=36 Identities=19% Similarity=0.174 Sum_probs=30.2
Q ss_pred CcceeeccCCCCHHHHHHHHHHcCCcce-eCCCCCCC
Q psy16399 16 SIPRCKPLKYAYEKEIVMYAYYKKLVYF-STECIFAP 51 (165)
Q Consensus 16 ~v~~IRPL~~v~E~ei~~ya~~~~lp~~-~~~CP~~~ 51 (165)
..++|+||..++.+||+.+|+..|+|.. ...||+..
T Consensus 369 ~~~~i~PL~~l~K~EVr~la~~lglp~~i~~~~P~~~ 405 (525)
T 1gpm_A 369 KMGLVEPLKELFKDEVRKIGLELGLPYDMLYRHPFPG 405 (525)
T ss_dssp CCEEECTTTTCCHHHHHHHHHHTTCCHHHHTSCCCCT
T ss_pred CCcEEehhhcCCHHHHHHHHHHcCCCHHhcccCCCCc
Confidence 3589999999999999999999999964 45677643
No 59
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=84.78 E-value=1.1 Score=31.46 Aligned_cols=37 Identities=19% Similarity=0.244 Sum_probs=30.9
Q ss_pred CCEEEEEec--CCccHHHHHHHHHHHhhhccCCccEEEEEe
Q psy16399 126 HHRIAIAAS--GGKDSTVLAHVLKVLNEKYQYGLDLVLLSI 164 (165)
Q Consensus 126 ~~~vlvavS--GG~DS~~Ll~ll~~l~~~~~~~~~l~~~~v 164 (165)
-++|+|++. |+.+|..++....++.+. .+.+++++||
T Consensus 15 ~~~ILv~vD~~~s~~s~~al~~a~~la~~--~~a~l~ll~v 53 (156)
T 3fg9_A 15 YRRILLTVDEDDNTSSERAFRYATTLAHD--YDVPLGICSV 53 (156)
T ss_dssp CC-EEEECCSCCCHHHHHHHHHHHHHHHH--HTCCEEEEEE
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHHHh--cCCEEEEEEE
Confidence 468999999 999999999988888766 4678999987
No 60
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=83.06 E-value=1.3 Score=31.55 Aligned_cols=36 Identities=8% Similarity=0.074 Sum_probs=31.0
Q ss_pred CEEEEEecC-CccHHHHHHHHHHHhhhccCCccEEEEEe
Q psy16399 127 HRIAIAASG-GKDSTVLAHVLKVLNEKYQYGLDLVLLSI 164 (165)
Q Consensus 127 ~~vlvavSG-G~DS~~Ll~ll~~l~~~~~~~~~l~~~~v 164 (165)
.+|+||+.| +..|..++.....+.+. .+.++.++||
T Consensus 25 ~~ILv~vD~~s~~s~~al~~A~~la~~--~~a~l~llhV 61 (155)
T 3dlo_A 25 MPIVVAVDKKSDRAERVLRFAAEEARL--RGVPVYVVHS 61 (155)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHH--HTCCEEEEEE
T ss_pred CeEEEEECCCCHHHHHHHHHHHHHHHh--cCCEEEEEEE
Confidence 589999999 99999999988888766 4678999987
No 61
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=82.45 E-value=0.39 Score=39.10 Aligned_cols=26 Identities=19% Similarity=0.126 Sum_probs=24.8
Q ss_pred cceeeccCCCCHHHHHHHHHHcCCcc
Q psy16399 17 IPRCKPLKYAYEKEIVMYAYYKKLVY 42 (165)
Q Consensus 17 v~~IRPL~~v~E~ei~~ya~~~~lp~ 42 (165)
+.+|+||...+++||..|+..+|+|+
T Consensus 188 ~~ri~PL~dWt~~DVw~Yi~~~~lpy 213 (306)
T 2wsi_A 188 FMRLQPLLHWDLTNIWSFLLYSNEPI 213 (306)
T ss_dssp CEEECTTTTCCHHHHHHHHHHHCCCB
T ss_pred cEEEeChHHCCHHHHHHHHHHcCCCC
Confidence 57899999999999999999999998
No 62
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=78.91 E-value=1.7 Score=33.46 Aligned_cols=36 Identities=14% Similarity=0.332 Sum_probs=27.9
Q ss_pred CCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEE
Q psy16399 125 KHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLL 162 (165)
Q Consensus 125 ~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~ 162 (165)
.+.+|+||+|||....-...++..|++. .+.++.++
T Consensus 18 ~~k~IllgvTGsiaa~k~~~lv~~L~~~--~g~~V~vv 53 (206)
T 1qzu_A 18 RKFHVLVGVTGSVAALKLPLLVSKLLDI--PGLEVAVV 53 (206)
T ss_dssp SSEEEEEEECSSGGGGTHHHHHHHHC-----CEEEEEE
T ss_pred CCCEEEEEEeChHHHHHHHHHHHHHhcc--cCCEEEEE
Confidence 5679999999999998888899988652 26677665
No 63
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=77.10 E-value=3.7 Score=32.23 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=31.5
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEe
Q psy16399 126 HHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSI 164 (165)
Q Consensus 126 ~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~v 164 (165)
.++|+||+.|+..|..++.....+.+. .+.++.++||
T Consensus 171 ~~~Ilv~~D~s~~s~~al~~a~~la~~--~~a~l~ll~v 207 (309)
T 3cis_A 171 QAPVLVGVDGSSASELATAIAFDEASR--RNVDLVALHA 207 (309)
T ss_dssp CCCEEEECCSSHHHHHHHHHHHHHHHH--TTCCEEEEEE
T ss_pred CCeEEEEeCCChHHHHHHHHHHHHHHh--cCCEEEEEEE
Confidence 468999999999999888888888765 4778999997
No 64
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=76.80 E-value=2.3 Score=33.48 Aligned_cols=28 Identities=29% Similarity=0.341 Sum_probs=25.6
Q ss_pred CCCcceeeccCCCCHHHHHHHHHHcCCc
Q psy16399 14 ADSIPRCKPLKYAYEKEIVMYAYYKKLV 41 (165)
Q Consensus 14 ~~~v~~IRPL~~v~E~ei~~ya~~~~lp 41 (165)
.+....|+||..++..||..+|+..|+|
T Consensus 148 gd~~~~i~PL~~l~K~eV~~la~~~gip 175 (249)
T 3p52_A 148 GDLACAFNPIGSLYKSEIYALAKYLNLH 175 (249)
T ss_dssp TTTCCSEETTTTSCHHHHHHHHHHTTCC
T ss_pred ccccCccccccCCcHHHHHHHHHHcCCc
Confidence 3456789999999999999999999999
No 65
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=76.22 E-value=5.5 Score=27.11 Aligned_cols=35 Identities=20% Similarity=0.426 Sum_probs=26.0
Q ss_pred CEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEE
Q psy16399 127 HRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLS 163 (165)
Q Consensus 127 ~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~ 163 (165)
.+|+++.++|.-|+.++.-+.+..++. ++++.+-+
T Consensus 4 kkIll~Cg~G~sTS~l~~k~~~~~~~~--gi~~~i~a 38 (106)
T 1e2b_A 4 KHIYLFSSAGMSTSLLVSKMRAQAEKY--EVPVIIEA 38 (106)
T ss_dssp EEEEEECSSSTTTHHHHHHHHHHHHHS--CCSEEEEE
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHC--CCCeEEEE
Confidence 379999999999998888888776663 44444433
No 66
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=76.21 E-value=5.7 Score=30.81 Aligned_cols=38 Identities=13% Similarity=0.047 Sum_probs=31.7
Q ss_pred CCCEEEEEecCCcc-------HHHHHHHHHHHhhhccCCccEEEEEe
Q psy16399 125 KHHRIAIAASGGKD-------STVLAHVLKVLNEKYQYGLDLVLLSI 164 (165)
Q Consensus 125 ~~~~vlvavSGG~D-------S~~Ll~ll~~l~~~~~~~~~l~~~~v 164 (165)
+.++|+||+.|+.+ |..++.....+.+. .+.+++++||
T Consensus 133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~--~~a~l~ll~v 177 (290)
T 3mt0_A 133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGL--AKATLHVISA 177 (290)
T ss_dssp TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHH--TTCEEEEEEE
T ss_pred CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHH--cCCeEEEEEE
Confidence 45799999999998 88888888787666 4788999987
No 67
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=73.67 E-value=4.5 Score=31.43 Aligned_cols=39 Identities=18% Similarity=0.155 Sum_probs=32.5
Q ss_pred CCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 125 KHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 125 ~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
..++|+||+.|+.+|.-.+.....+.+. .+.++.++||.
T Consensus 169 ~~~~Ilv~~d~s~~s~~al~~a~~la~~--~~~~l~ll~v~ 207 (294)
T 3loq_A 169 LFDRVLVAYDFSKWADRALEYAKFVVKK--TGGELHIIHVS 207 (294)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHHHHH--HTCEEEEEEEC
T ss_pred cCCEEEEEECCCHHHHHHHHHHHHHhhh--cCCEEEEEEEc
Confidence 4579999999999999888888888665 46789999873
No 68
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=73.60 E-value=5.3 Score=27.48 Aligned_cols=37 Identities=14% Similarity=0.099 Sum_probs=26.8
Q ss_pred CCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEE
Q psy16399 125 KHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVL 161 (165)
Q Consensus 125 ~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~ 161 (165)
+.-+|++..+||.-|+.|..-+.+..++.+.+.++.+
T Consensus 5 ~~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a 41 (108)
T 3nbm_A 5 KELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANS 41 (108)
T ss_dssp CCEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEE
Confidence 3458999999999888888888877666434444443
No 69
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}
Probab=72.19 E-value=6.8 Score=30.64 Aligned_cols=27 Identities=15% Similarity=0.188 Sum_probs=25.0
Q ss_pred CCcceeeccCCCCHHHHHHHHHHcCCc
Q psy16399 15 DSIPRCKPLKYAYEKEIVMYAYYKKLV 41 (165)
Q Consensus 15 ~~v~~IRPL~~v~E~ei~~ya~~~~lp 41 (165)
+....|+||..++..||..+|+..|+|
T Consensus 158 d~~~~i~PL~~l~K~eVr~lA~~lglp 184 (249)
T 3fiu_A 158 DGAADILPLVNLKKSQVFELGKYLDVP 184 (249)
T ss_dssp TTCCSBCTTTTCCHHHHHHHHHHTTCC
T ss_pred CCCcceeecccCcHHHHHHHHHHcCCc
Confidence 456799999999999999999999999
No 70
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=72.02 E-value=5.3 Score=30.43 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=31.0
Q ss_pred CCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 125 KHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 125 ~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
+.++|+||+.|+.+|..++.....+... .+.++.++||.
T Consensus 153 ~~~~ilv~~d~s~~~~~al~~a~~la~~--~~a~l~ll~v~ 191 (268)
T 3ab8_A 153 ELEGALLGYDASESAVRALHALAPLARA--LGLGVRVVSVH 191 (268)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHH--HTCCEEEEEEC
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHhhhc--CCCEEEEEEEc
Confidence 3468999999999998888877777654 36779999973
No 71
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=71.12 E-value=4.6 Score=31.68 Aligned_cols=38 Identities=13% Similarity=0.056 Sum_probs=31.4
Q ss_pred CCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEe
Q psy16399 125 KHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSI 164 (165)
Q Consensus 125 ~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~v 164 (165)
.-.+|+|++.|+..|..++.....+.++ .+.++.++||
T Consensus 18 ~~~~ILv~~D~s~~s~~al~~A~~lA~~--~~a~l~ll~v 55 (309)
T 3cis_A 18 SSLGIIVGIDDSPAAQVAVRWAARDAEL--RKIPLTLVHA 55 (309)
T ss_dssp CTTEEEEECCSSHHHHHHHHHHHHHHHH--HTCCEEEEEE
T ss_pred CCCeEEEEECCCHHHHHHHHHHHHHHHh--cCCcEEEEEE
Confidence 3478999999999999888887777665 3678999987
No 72
>1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A
Probab=70.16 E-value=2.2 Score=27.23 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=17.5
Q ss_pred cCCccHHHHHHHHHHHhhhc
Q psy16399 134 SGGKDSTVLAHVLKVLNEKY 153 (165)
Q Consensus 134 SGG~DS~~Ll~ll~~l~~~~ 153 (165)
.||.||+.++.++..+.+++
T Consensus 33 ~g~lDSl~~velv~~lE~~f 52 (80)
T 1dv5_A 33 TGLLDSMGTVQLLLELQSQF 52 (80)
T ss_dssp TSSCCSHHHHHHHHHHTTTS
T ss_pred ccCcChHHHHHHHHHHHHHh
Confidence 47799999999999998773
No 73
>1or5_A Acyl carrier protein; ACP, biosynthesis, frenolicin, holo, polyketide synthase, PKS, biosynthetic protein; NMR {Streptomyces roseofulvus} SCOP: a.28.1.1
Probab=63.25 E-value=4.6 Score=25.47 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=17.6
Q ss_pred ecCCccHHHHHHHHHHHhhhc
Q psy16399 133 ASGGKDSTVLAHVLKVLNEKY 153 (165)
Q Consensus 133 vSGG~DS~~Ll~ll~~l~~~~ 153 (165)
..-|.||+.++.+...+.+++
T Consensus 34 ~dlG~DSL~~vel~~~le~~f 54 (83)
T 1or5_A 34 VDLGYDSLALLETAAVLQQRY 54 (83)
T ss_dssp HHHSCCHHHHHHHHHHHHTTS
T ss_pred HHhCCCHHHHHHHHHHHHHHH
Confidence 345789999999999998873
No 74
>2l4b_A Acyl carrier protein; infectious disease, human granulocytic anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma phagocytophilum}
Probab=62.18 E-value=5.8 Score=25.38 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=18.5
Q ss_pred ecCCccHHHHHHHHHHHhhhc
Q psy16399 133 ASGGKDSTVLAHVLKVLNEKY 153 (165)
Q Consensus 133 vSGG~DS~~Ll~ll~~l~~~~ 153 (165)
-..|.||+.++.++..+.+++
T Consensus 39 ~dlglDSl~~vel~~~lE~~f 59 (88)
T 2l4b_A 39 KDFNLDSLDFVDLIMSLEERF 59 (88)
T ss_dssp TTTTCCHHHHHHHHHHHHHHT
T ss_pred hccCCcHHHHHHHHHHHHHHH
Confidence 368999999999999998873
No 75
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A
Probab=61.95 E-value=5.5 Score=24.85 Aligned_cols=21 Identities=14% Similarity=0.317 Sum_probs=18.5
Q ss_pred ecCCccHHHHHHHHHHHhhhc
Q psy16399 133 ASGGKDSTVLAHVLKVLNEKY 153 (165)
Q Consensus 133 vSGG~DS~~Ll~ll~~l~~~~ 153 (165)
..-|.||+.++.+...+.+++
T Consensus 35 ~dlG~DSl~~vel~~~le~~f 55 (81)
T 1f80_D 35 EDLGADXLDVVELVMELEDEF 55 (81)
T ss_dssp HHSCCCHHHHHHHHHHHHHHT
T ss_pred HHcCCcHHHHHHHHHHHHHHh
Confidence 468899999999999998873
No 76
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=60.70 E-value=3.9 Score=31.78 Aligned_cols=37 Identities=8% Similarity=0.038 Sum_probs=31.5
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEEe
Q psy16399 126 HHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSI 164 (165)
Q Consensus 126 ~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~v 164 (165)
-++|+|++.|+..|..++.....+.+. .+.++.++||
T Consensus 22 ~~~ILv~vD~s~~s~~al~~A~~lA~~--~~a~l~ll~v 58 (294)
T 3loq_A 22 SNAMLLPTDLSENSFKVLEYLGDFKKV--GVEEIGVLFV 58 (294)
T ss_dssp TCEEEEECCSCTGGGGGGGGHHHHHHT--TCCEEEEECC
T ss_pred hccEEEecCCCHHHHHHHHHHHHHHhh--cCCEEEEEEE
Confidence 469999999999999888888888766 5788998886
No 77
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=60.01 E-value=3.8 Score=34.98 Aligned_cols=36 Identities=14% Similarity=0.176 Sum_probs=29.2
Q ss_pred cceeeccCC-------CCHHHHHHHHHHcCCccee-CCCCCCCC
Q psy16399 17 IPRCKPLKY-------AYEKEIVMYAYYKKLVYFS-TECIFAPN 52 (165)
Q Consensus 17 v~~IRPL~~-------v~E~ei~~ya~~~~lp~~~-~~CP~~~~ 52 (165)
++++-|+.. .+.+||+.||+.+|+|+.. ..|||+.+
T Consensus 149 ~~IiaPl~d~~~l~~~lsK~Eir~~A~e~Glp~~~t~~kp~S~d 192 (421)
T 1vl2_A 149 LKVISPWKDPEFLAKFKGRTDLINYAMEKGIPIKVSKKRPYSED 192 (421)
T ss_dssp SEEECGGGCHHHHHHTC--CHHHHHHHHHTCCCCSSCCCSSEEE
T ss_pred CeEEcccCchhhccccCCHHHHHHHHHHcCCCcccCCCCCCcCC
Confidence 588999998 6888999999999999874 68999743
No 78
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Probab=57.61 E-value=6.7 Score=24.40 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=17.7
Q ss_pred cCCccHHHHHHHHHHHhhhc
Q psy16399 134 SGGKDSTVLAHVLKVLNEKY 153 (165)
Q Consensus 134 SGG~DS~~Ll~ll~~l~~~~ 153 (165)
..|.||+.++.+...+.+++
T Consensus 36 dlG~DSl~~~~l~~~le~~f 55 (82)
T 2cnr_A 36 DLDVDSLSMVEVVVAAEERF 55 (82)
T ss_dssp TSCCCHHHHHHHHHHHHGGG
T ss_pred ccCCChHHHHHHHHHHHHHh
Confidence 67889999999999998874
No 79
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=57.26 E-value=8.8 Score=29.53 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=23.6
Q ss_pred CCCEEEEEecCCccHHHHHHHHHHHhhh
Q psy16399 125 KHHRIAIAASGGKDSTVLAHVLKVLNEK 152 (165)
Q Consensus 125 ~~~~vlvavSGG~DS~~Ll~ll~~l~~~ 152 (165)
.+.+|+||+|||....-...++..|++.
T Consensus 18 ~~k~IllgvTGsiaa~k~~~ll~~L~~~ 45 (209)
T 1mvl_A 18 RKPRVLLAASGSVAAIKFGNLCHCFTEW 45 (209)
T ss_dssp -CCEEEEEECSSGGGGGHHHHHHHHHTT
T ss_pred CCCEEEEEEeCcHHHHHHHHHHHHHhcC
Confidence 4679999999999988888899888664
No 80
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=56.32 E-value=15 Score=28.52 Aligned_cols=40 Identities=25% Similarity=0.246 Sum_probs=29.6
Q ss_pred CCCEEEEEecCCcc-------HHHHHHHHHHHhhhccCCccEEEEEe
Q psy16399 125 KHHRIAIAASGGKD-------STVLAHVLKVLNEKYQYGLDLVLLSI 164 (165)
Q Consensus 125 ~~~~vlvavSGG~D-------S~~Ll~ll~~l~~~~~~~~~l~~~~v 164 (165)
...+|+||+.|+.+ |..++.....+.+....+.+++++||
T Consensus 155 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v 201 (319)
T 3olq_A 155 EYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSA 201 (319)
T ss_dssp TTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEE
T ss_pred cCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence 46799999999995 57677776677655211678999987
No 81
>3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty acid biosynthesis, L synthesis, transit peptide, biosynthetic protein; HET: PNS; 1.80A {Plasmodium falciparum} SCOP: a.28.1.0 PDB: 3gzl_A* 2fq0_A* 2fq2_A*
Probab=55.94 E-value=5.8 Score=24.95 Aligned_cols=20 Identities=35% Similarity=0.494 Sum_probs=17.8
Q ss_pred cCCccHHHHHHHHHHHhhhc
Q psy16399 134 SGGKDSTVLAHVLKVLNEKY 153 (165)
Q Consensus 134 SGG~DS~~Ll~ll~~l~~~~ 153 (165)
.-|.||+.++.++..+.+++
T Consensus 34 dlg~DSl~~vel~~~le~~f 53 (81)
T 3gzm_A 34 DLGADSLDLVELIMALEEKF 53 (81)
T ss_dssp HSCCCHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHH
Confidence 67899999999999998874
No 82
>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus}
Probab=55.75 E-value=6.6 Score=24.25 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=18.7
Q ss_pred ecCCccHHHHHHHHHHHhhhc
Q psy16399 133 ASGGKDSTVLAHVLKVLNEKY 153 (165)
Q Consensus 133 vSGG~DS~~Ll~ll~~l~~~~ 153 (165)
...|.||+.++.+...+.+++
T Consensus 33 ~~lG~DSl~~~~l~~~le~~f 53 (80)
T 1x3o_A 33 EDLGADSLDTVELIMGLEDEF 53 (80)
T ss_dssp TTTCCCHHHHHHHHHHHHHHH
T ss_pred hhcCccHHHHHHHHHHHHHHH
Confidence 578999999999999998874
No 83
>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str}
Probab=55.69 E-value=5.9 Score=24.71 Aligned_cols=20 Identities=15% Similarity=0.179 Sum_probs=18.2
Q ss_pred cCCccHHHHHHHHHHHhhhc
Q psy16399 134 SGGKDSTVLAHVLKVLNEKY 153 (165)
Q Consensus 134 SGG~DS~~Ll~ll~~l~~~~ 153 (165)
..|.||+.++.+...+.+++
T Consensus 35 dlG~DSl~~~el~~~le~~f 54 (81)
T 2lol_A 35 DLKADSLDTVELMMAIEVEY 54 (81)
T ss_dssp HTTCCHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHH
Confidence 78999999999999998874
No 84
>1l0i_A Acyl carrier protein; acyl chain binding, fatty acid biosynt lipid transport; HET: PSR; 1.20A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ny7_B* 2fhs_C 1l0h_A* 1acp_A 1t8k_A 2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A 2k94_A 2l0q_A
Probab=55.38 E-value=6.1 Score=24.46 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=18.0
Q ss_pred cCCccHHHHHHHHHHHhhhc
Q psy16399 134 SGGKDSTVLAHVLKVLNEKY 153 (165)
Q Consensus 134 SGG~DS~~Ll~ll~~l~~~~ 153 (165)
..|.||+.++.+...+.+++
T Consensus 32 dlG~DSl~~~el~~~le~~f 51 (78)
T 1l0i_A 32 DLGADSLDTVELVMALEEEF 51 (78)
T ss_dssp TSCCCHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHh
Confidence 68999999999999998874
No 85
>2ehs_A ACP, acyl carrier protein; lipid transport, structural genomics, NPPSFA, national proje protein structural and functional analyses; 1.30A {Aquifex aeolicus} PDB: 2eht_A
Probab=54.89 E-value=6.9 Score=23.89 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=18.6
Q ss_pred ecCCccHHHHHHHHHHHhhhc
Q psy16399 133 ASGGKDSTVLAHVLKVLNEKY 153 (165)
Q Consensus 133 vSGG~DS~~Ll~ll~~l~~~~ 153 (165)
...|.||+.++.+...+.+++
T Consensus 29 ~~lG~DSl~~~~l~~~le~~~ 49 (77)
T 2ehs_A 29 EDLGADSLDVVELIMAFEEEF 49 (77)
T ss_dssp TTTCCCHHHHHHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHHHHHHh
Confidence 578999999999999998774
No 86
>2qnw_A Acyl carrier protein; malaria, SGC, structural genomics CONS fatty acid biosynthesis, lipid synthesis, phosphopantethein transit peptide; 1.90A {Toxoplasma gondii}
Probab=54.73 E-value=6.2 Score=24.81 Aligned_cols=20 Identities=20% Similarity=0.235 Sum_probs=17.9
Q ss_pred cCCccHHHHHHHHHHHhhhc
Q psy16399 134 SGGKDSTVLAHVLKVLNEKY 153 (165)
Q Consensus 134 SGG~DS~~Ll~ll~~l~~~~ 153 (165)
.-|.||+.++.+...+.+++
T Consensus 36 dlG~DSl~~vel~~~le~~f 55 (82)
T 2qnw_A 36 DLDADSLDSVELVMAFEEKF 55 (82)
T ss_dssp HSCCCHHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH
Confidence 68899999999999998874
No 87
>2kw2_A Specialized acyl carrier protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} PDB: 2ll8_A* 2lpk_A 3lmo_A
Probab=53.92 E-value=9.7 Score=25.31 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=19.4
Q ss_pred cCCccHHHHHHHHHHHhhhccCCcc
Q psy16399 134 SGGKDSTVLAHVLKVLNEKYQYGLD 158 (165)
Q Consensus 134 SGG~DS~~Ll~ll~~l~~~~~~~~~ 158 (165)
..|.||+.++.++..+.++ +|++
T Consensus 32 dLGlDSL~~veLi~~lE~~--fgi~ 54 (101)
T 2kw2_A 32 DLGIDSLDFLDIAFAIDKA--FGIK 54 (101)
T ss_dssp CCCCCHHHHHHHHHHHHHH--TTCC
T ss_pred hcCCCHHHHHHHHHHHHHH--HCCc
Confidence 5799999999999999887 4444
No 88
>2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.63 E-value=8.9 Score=25.23 Aligned_cols=44 Identities=7% Similarity=0.130 Sum_probs=29.6
Q ss_pred hhhHHHHHHHHhcc-----ccCCCCEEEEEecCCccHHHHHHHHHHHhhhc
Q psy16399 108 AFELEIHHTIVTNK-----LFEKHHRIAIAASGGKDSTVLAHVLKVLNEKY 153 (165)
Q Consensus 108 ~~~~~v~~~i~~~~-----~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~ 153 (165)
.+...+.+.+.+.- -+.+...+. -.-|.||+.++.++..+.+++
T Consensus 15 ~i~~~l~~~l~~~l~~~~~~i~~d~~l~--~dlG~DSL~~vel~~~le~~f 63 (99)
T 2dnw_A 15 GIQDRVLYVLKLYDKIDPEKLSVNSHFM--KDLGLDSLDQVEIIMAMEDEF 63 (99)
T ss_dssp HHHHHHHHHHHHCTTSCTTTCCTTCCCC--CCCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCHhhCCCCCchh--hhcCCCHHHHHHHHHHHHHHH
Confidence 46777777777641 122233221 257899999999999998874
No 89
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Chromohalobacter salexigens}
Probab=53.40 E-value=19 Score=27.75 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=27.6
Q ss_pred cCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCc-cEEEEEeC
Q psy16399 123 FEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGL-DLVLLSID 165 (165)
Q Consensus 123 ~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~-~l~~~~vd 165 (165)
+..+.+..+|+|||.-=..+...|.+ .. .+| ++.+.++|
T Consensus 29 i~~~~~~~l~LsgGstp~~~y~~L~~--~~--idw~~v~~f~~D 68 (226)
T 3lwd_A 29 LAKRERALLVVSGGSTPKPFFTSLAA--KA--LPWARVDVTLAD 68 (226)
T ss_dssp HTTSSCEEEEECCSSTTHHHHHHHHT--SC--SCGGGEEEEESE
T ss_pred HHhCCCEEEEEcCCCCHHHHHHHHHh--cC--CCchhEEEEEee
Confidence 44567899999999877777777764 22 455 47777665
No 90
>2amw_A Hypothetical protein NE2163; all helical protein, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=52.44 E-value=9.7 Score=24.03 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=16.4
Q ss_pred CCc-cHHHHHHHHHHHhhhc
Q psy16399 135 GGK-DSTVLAHVLKVLNEKY 153 (165)
Q Consensus 135 GG~-DS~~Ll~ll~~l~~~~ 153 (165)
-|. ||+.++.++..+.+++
T Consensus 34 lg~~DSl~~~elv~~lE~~f 53 (83)
T 2amw_A 34 IPELDSMAVVNVITALEEYF 53 (83)
T ss_dssp STTTTHHHHHHHHHHHHHHT
T ss_pred cCccCHHHHHHHHHHHHHHh
Confidence 466 9999999999998873
No 91
>3hn6_A Glucosamine-6-phosphate deaminase; niaid, ssgcid, decode, UW, SBRI, infectious disease, LYME DI non-hodgkin lymphomas, neuroborreliosis; 2.20A {Borrelia burgdorferi}
Probab=51.97 E-value=34 Score=27.30 Aligned_cols=55 Identities=13% Similarity=0.178 Sum_probs=34.1
Q ss_pred hhHHHHHHHHhccccC-CCCEEEEEecCCccHHHHHHHHHHHhhhccCCc-cEEEEEeC
Q psy16399 109 FELEIHHTIVTNKLFE-KHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGL-DLVLLSID 165 (165)
Q Consensus 109 ~~~~v~~~i~~~~~~~-~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~-~l~~~~vd 165 (165)
+-+.+.+.+++. +. .+.+..+|+|||.-=..+...|.+..++.+.+| ++.++++|
T Consensus 37 aA~~i~~~i~~a--~~~~~~~~~l~LsgGsTP~~~y~~L~~~~~~~~idw~~v~~f~~D 93 (289)
T 3hn6_A 37 AANHVAQKINEF--SPTKENPFILGLPTGSSPIGMYKNLIELNKNKKISFQNVITFNMD 93 (289)
T ss_dssp HHHHHHHHHHHH--CCBTTBCEEEEECCSSTTHHHHHHHHHHHHTTSCCCTTEEEEESE
T ss_pred HHHHHHHHHHHH--hhccCCcEEEEECCCccHHHHHHHHHHhHhhcCCCchheEEEeCc
Confidence 334445555542 22 244689999999998888888876533222454 47776654
No 92
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=51.72 E-value=6.3 Score=24.86 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=18.5
Q ss_pred ecCCccHHHHHHHHHHHhhhc
Q psy16399 133 ASGGKDSTVLAHVLKVLNEKY 153 (165)
Q Consensus 133 vSGG~DS~~Ll~ll~~l~~~~ 153 (165)
-.-|.||+.++.++..+.+++
T Consensus 37 ~dlG~DSl~~vel~~~le~~f 57 (84)
T 2kwl_A 37 EDLNADSLDIYELLYLLEEAF 57 (84)
T ss_dssp HTSSSCHHHHHHHHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHH
Confidence 478999999999999998774
No 93
>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus}
Probab=51.55 E-value=9.9 Score=25.51 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=28.7
Q ss_pred hhHHHHHHHHhccc-----cCCCCEEEEEecCCccHHHHHHHHHHHhhhc
Q psy16399 109 FELEIHHTIVTNKL-----FEKHHRIAIAASGGKDSTVLAHVLKVLNEKY 153 (165)
Q Consensus 109 ~~~~v~~~i~~~~~-----~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~ 153 (165)
+..++.+.+.+.-- +.+...+ .-.-|.||+.++.++..+.+++
T Consensus 27 i~~~l~~iiae~l~~~~~~I~~d~~l--~~dLGlDSL~~veLi~~lE~~f 74 (101)
T 4dxe_H 27 NFDKVKDIIVDRLGVDADKVTEDASF--KDDLGADSLDIAELVMELEDEF 74 (101)
T ss_dssp HHHHHHHHHHHTTCCCGGGCCTTCBT--TTTSCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCcChhhCCCCCcc--hhhcCCCcHHHHHHHHHHHHHH
Confidence 56677777666411 2223222 2467999999999999998873
No 94
>2nx2_A Hypothetical protein YPSA; structural genomics, unknown function, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: c.129.1.2
Probab=50.84 E-value=23 Score=26.39 Aligned_cols=51 Identities=16% Similarity=0.268 Sum_probs=33.2
Q ss_pred hhHHHHHHHHhccccCCC-CEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEE
Q psy16399 109 FELEIHHTIVTNKLFEKH-HRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLS 163 (165)
Q Consensus 109 ~~~~v~~~i~~~~~~~~~-~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~ 163 (165)
+.+.+.+.|.+. +..| ..++.+.-.|.|..++-.++ ++++.+ .++++.++.
T Consensus 28 ik~~L~~~l~~l--~~~G~~~~isgga~G~D~~aae~vl-~lk~~y-~~i~L~~v~ 79 (181)
T 2nx2_A 28 IKKAIKNRLIAF--LDEGLEWILISGQLGVELWAAEAAY-DLQEEY-PDLKVAVIT 79 (181)
T ss_dssp HHHHHHHHHHHH--HTTTCCEEEECCCTTHHHHHHHHHH-TTTTTC-TTCEEEEEE
T ss_pred HHHHHHHHHHHH--HhCCCcEEEECCCccHHHHHHHHHH-Hhcccc-CCceEEEEe
Confidence 445555555552 3344 68899999999999877766 445554 357777663
No 95
>1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier protein, solution STR antibiotic biosynthesis; NMR {Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A 2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A* 2kgd_A* 2kge_A*
Probab=50.84 E-value=5 Score=25.47 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=18.3
Q ss_pred ecCCccHHHHHHHHHHHhhhc
Q psy16399 133 ASGGKDSTVLAHVLKVLNEKY 153 (165)
Q Consensus 133 vSGG~DS~~Ll~ll~~l~~~~ 153 (165)
..-|.||+.++.++..+.+++
T Consensus 36 ~dlG~DSL~~vel~~~le~~f 56 (86)
T 1af8_A 36 EDIGYDSLALMETAARLESRY 56 (86)
T ss_dssp TTTTCCTTTHHHHHHHHTTTT
T ss_pred hhcCCCHHHHHHHHHHHHHHH
Confidence 467899999999999998873
No 96
>3eb9_A 6-phosphogluconolactonase; catalytic mechanism, pentose phosphate pathway, hydrolase, zinc binding site; HET: FLC; 2.00A {Trypanosoma brucei} PDB: 2j0e_A* 3e7f_A*
Probab=50.32 E-value=19 Score=28.40 Aligned_cols=50 Identities=18% Similarity=0.118 Sum_probs=31.6
Q ss_pred HHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHH-hhhccCCc--cEEEEEeC
Q psy16399 112 EIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVL-NEKYQYGL--DLVLLSID 165 (165)
Q Consensus 112 ~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l-~~~~~~~~--~l~~~~vd 165 (165)
.+.+.+++. +..+.+..+|+|||.-=..+...|.+. +.. .+| ++.+.++|
T Consensus 23 ~i~~~i~~~--i~~~~~~~l~LsgGstP~~ly~~L~~~~~~~--idw~~~v~~f~~D 75 (266)
T 3eb9_A 23 KIVEIIEAS--GSQQWPLSIALAGGSTPKMTYARLHDEHLNL--LREKRALRFFMGD 75 (266)
T ss_dssp HHHHHHHHH--CGGGCSEEEEECCSHHHHHHHHHHHHHHHHH--HTTSCCEEEEESE
T ss_pred HHHHHHHHH--HHhCCCEEEEEcCCCCHHHHHHHHHHHhhcC--CChHHcEEEEeee
Confidence 344444442 445668999999998777777777642 333 344 47777665
No 97
>2kr5_A PKS, aflatoxin biosynthesis polyketide synthase; acyl carrrier protein, holo, phosphopantetheine, transport protein; HET: PNS; NMR {Aspergillus parasiticus}
Probab=49.75 E-value=11 Score=23.73 Aligned_cols=21 Identities=24% Similarity=0.112 Sum_probs=17.8
Q ss_pred ecCCccHHHHHHHHHHHhhhc
Q psy16399 133 ASGGKDSTVLAHVLKVLNEKY 153 (165)
Q Consensus 133 vSGG~DS~~Ll~ll~~l~~~~ 153 (165)
+.=|.||+.++.+...+++++
T Consensus 38 ~~lG~DSL~~~~l~~~l~~~~ 58 (89)
T 2kr5_A 38 ADMGIDSLSSMVIGSRFREDL 58 (89)
T ss_dssp HHHTCCHHHHHHHHHHHHHTT
T ss_pred HHcCccHHHHHHHHHHHHHHH
Confidence 455889999999999998873
No 98
>3css_A 6-phosphogluconolactonase; structural genomics, medical structural genomics of pathogen protozoa consortium, SGPP, leish hydrolase; 1.70A {Leishmania braziliensis} PDB: 3ch7_A
Probab=49.41 E-value=18 Score=28.47 Aligned_cols=51 Identities=20% Similarity=0.160 Sum_probs=31.5
Q ss_pred HHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCc-cEEEEEeC
Q psy16399 112 EIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGL-DLVLLSID 165 (165)
Q Consensus 112 ~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~-~l~~~~vd 165 (165)
.+.+.+++. +..+....||+|||.-=..+...|.+. .+...+| +++++++|
T Consensus 24 ~i~~~i~~a--~~~~~~~~l~LsgGstp~~ly~~L~~~-~~~~i~w~~v~~f~~D 75 (267)
T 3css_A 24 VILAAIDAR--VDKSVPVVLALSGGSTPKRLYEELHEK-DLALLQQHAVQFILGD 75 (267)
T ss_dssp HHHHHHHTC--SSTTSCEEEEECCSSTTHHHHHHHHHH-SHHHHHTTCEEEEESE
T ss_pred HHHHHHHHH--HHhCCCEEEEEeCCCCHHHHHHHHHHh-cccCCChhHeEEEeee
Confidence 344444442 445667999999999888888888764 1101222 46666554
No 99
>3ico_A 6PGL, 6-phosphogluconolactonase; ssgcid, infectious disease, niaid, hydrolase, structural genomics; 2.15A {Mycobacterium tuberculosis}
Probab=49.18 E-value=18 Score=28.68 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=26.5
Q ss_pred CCCEEEEEecCCccHHHHHHHHHHHhhhccCCc-cEEEEEeC
Q psy16399 125 KHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGL-DLVLLSID 165 (165)
Q Consensus 125 ~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~-~l~~~~vd 165 (165)
.+.+..+|+|||.-=..+...|.+.... .+| ++.++++|
T Consensus 53 ~~~~~~l~LsgGstP~~~y~~L~~~~~~--idw~~v~~f~~D 92 (268)
T 3ico_A 53 ARGQALIVLTGGGNGIALLRYLSAQAQQ--IEWSKVHLFWGD 92 (268)
T ss_dssp HHSCEEEEECCSHHHHHHHHHHHHHGGG--SCGGGEEEEESE
T ss_pred hcCceEEEEecCCchhHHHHHHHHHhhh--hhheeeEEeecc
Confidence 3467999999997666777777753233 455 47776665
No 100
>3oc6_A 6-phosphogluconolactonase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, carboxylic ester hydrolase; 2.10A {Mycobacterium smegmatis}
Probab=48.80 E-value=17 Score=28.36 Aligned_cols=38 Identities=13% Similarity=0.136 Sum_probs=25.9
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHhhhccCCc-cEEEEEeC
Q psy16399 126 HHRIAIAASGGKDSTVLAHVLKVLNEKYQYGL-DLVLLSID 165 (165)
Q Consensus 126 ~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~-~l~~~~vd 165 (165)
+.+..+|+|||.-=..+...|.+.... .+| ++.++++|
T Consensus 38 ~~~~~l~LsgGstP~~~y~~L~~~~~~--idw~~v~~f~~D 76 (248)
T 3oc6_A 38 RGQATIVLTGGGTGIGLLKRVRERSGE--IDWSKVHIYWGD 76 (248)
T ss_dssp HSCEEEEECCSHHHHHHHHHHHHTGGG--SCGGGEEEEESE
T ss_pred CCCEEEEECCCccHHHHHHHHHhhccC--CCcceEEEEEee
Confidence 457999999997667777777653222 455 47777665
No 101
>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C*
Probab=48.67 E-value=4.8 Score=25.27 Aligned_cols=42 Identities=12% Similarity=0.166 Sum_probs=26.8
Q ss_pred hhHHHHHHHHhc-c-----ccCCCCEEEEEecCCccHHHHHHHHHHHhhhc
Q psy16399 109 FELEIHHTIVTN-K-----LFEKHHRIAIAASGGKDSTVLAHVLKVLNEKY 153 (165)
Q Consensus 109 ~~~~v~~~i~~~-~-----~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~ 153 (165)
+..++.+.+.+. + -+.+...+. .-|.||+.++.++..+.+++
T Consensus 5 i~~~l~~i~~~~l~~~~~~~i~~~~~l~---dlG~DSl~~vel~~~le~~f 52 (82)
T 2ava_A 5 TIDKVSDIVKEKLALGADVVVTADSEFS---KLGADSLDTVEIVMNLEEEF 52 (82)
T ss_dssp HHHHHHHHHHHHTTCSSSSCCCSSCCSC---CCTTCCSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCcccccCCCCchh---hcCCCHHHHHHHHHHHHHHH
Confidence 444555555543 1 233344442 56789999999999998874
No 102
>1nq4_A Oxytetracycline polyketide synthase acyl carrier protein; solution structure, dynamics, ACP, biosynthetic protein; NMR {Streptomyces rimosus} SCOP: a.28.1.1
Probab=48.62 E-value=9.1 Score=25.15 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=17.4
Q ss_pred cCCccHHHHHHHHHHHhhhc
Q psy16399 134 SGGKDSTVLAHVLKVLNEKY 153 (165)
Q Consensus 134 SGG~DS~~Ll~ll~~l~~~~ 153 (165)
.=|.||+.++.++.++.+++
T Consensus 36 dlG~DSL~~vel~~~le~~f 55 (95)
T 1nq4_A 36 ALGYDSLALLNTVGRIERDY 55 (95)
T ss_dssp HHTCCSHHHHHHHHHHHHHT
T ss_pred hhCCCHHHHHHHHHHHHHHH
Confidence 45799999999999998874
No 103
>1klp_A ACP, ACPM, meromycolate extension acyl carrier protein; four-helix bundle, ligand transport; NMR {Mycobacterium tuberculosis} SCOP: a.28.1.1
Probab=47.63 E-value=10 Score=25.69 Aligned_cols=20 Identities=20% Similarity=0.235 Sum_probs=18.1
Q ss_pred cCCccHHHHHHHHHHHhhhc
Q psy16399 134 SGGKDSTVLAHVLKVLNEKY 153 (165)
Q Consensus 134 SGG~DS~~Ll~ll~~l~~~~ 153 (165)
..|.||+.++.++..+.+++
T Consensus 36 dlG~DSL~~vel~~~lE~~f 55 (115)
T 1klp_A 36 DLDIDSLSMVEIAVQTEDKY 55 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHHHHHH
Confidence 68999999999999998873
No 104
>3tx2_A Probable 6-phosphogluconolactonase; ssgcid, hydrolase; 1.50A {Mycobacterium abscessus}
Probab=47.47 E-value=18 Score=28.21 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=25.8
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHhhhccCCc-cEEEEEeC
Q psy16399 126 HHRIAIAASGGKDSTVLAHVLKVLNEKYQYGL-DLVLLSID 165 (165)
Q Consensus 126 ~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~-~l~~~~vd 165 (165)
+.+..+|+|||.-=..+...|.+.... .+| ++.++++|
T Consensus 38 ~~~~~l~LsgGstP~~~y~~L~~~~~~--idw~~v~~f~~D 76 (251)
T 3tx2_A 38 RGKAMIVLTGGGTGIALLKHLRDVASG--LDWTNVHVFWGD 76 (251)
T ss_dssp HSCEEEEECCSHHHHHHHHHHHHHHTT--SCGGGEEEEESE
T ss_pred CCCEEEEECCCchHHHHHHHHHhhccC--CCCceeEEEeee
Confidence 457999999997666777777653222 455 47777665
No 105
>3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ejd_A* 3eje_A*
Probab=47.43 E-value=8.7 Score=25.41 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=28.8
Q ss_pred hhhHHHHHHHHhc-cc----cCCCCEEEEEecCCccHHHHHHHHHHHhhhc
Q psy16399 108 AFELEIHHTIVTN-KL----FEKHHRIAIAASGGKDSTVLAHVLKVLNEKY 153 (165)
Q Consensus 108 ~~~~~v~~~i~~~-~~----~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~ 153 (165)
.+..++.+.+.+. +. +.+...+ .-.-|.||+.++.++..+.+++
T Consensus 22 ~i~~~l~~iia~~l~~~~~~i~~d~~l--~~dLGlDSL~~vel~~~lE~~f 70 (97)
T 3ejb_A 22 TIEERVKKIIGEQLGVKQEEVTNNASF--VEDLGADSLDTVELVMALEEEF 70 (97)
T ss_dssp CHHHHHHHHHHHHSCCCTTTSCTTCBT--TTTTCCCTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCcCHHHCCCCCCc--hhhcCCCHHHHHHHHHHHHHHH
Confidence 3666777766653 21 2223221 1267999999999999998873
No 106
>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1
Probab=46.20 E-value=9.8 Score=25.49 Aligned_cols=42 Identities=7% Similarity=0.124 Sum_probs=28.8
Q ss_pred hhHHHHHHHHhccc-----cCCCCEEEEEecCCccHHHHHHHHHHHhhhc
Q psy16399 109 FELEIHHTIVTNKL-----FEKHHRIAIAASGGKDSTVLAHVLKVLNEKY 153 (165)
Q Consensus 109 ~~~~v~~~i~~~~~-----~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~ 153 (165)
+..++.+.+.+.-- +.+...+ -.-|.||+.++.++..+.+++
T Consensus 18 i~~~l~~ila~~l~v~~~~I~~d~~L---~dLGlDSL~~veL~~~LE~~f 64 (100)
T 1vku_A 18 LIAKFVEIASEKMGKDLETVDEENTF---KELGFDSIDVIDLVMFFEDEF 64 (100)
T ss_dssp HHHHHHHHHHHTTCCCCCSCCTTSBT---TTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHCCCCCCH---HHcCCchHHHHHHHHHHHHHH
Confidence 55666666666311 2233333 578999999999999998874
No 107
>3e15_A Glucose-6-phosphate 1-dehydrogenase; 6-phosphogluconolactonase, malaria, carbohydrate metabolism, glucose metabolism, NADP, oxidoreductase,; HET: MSE; 2.00A {Plasmodium vivax}
Probab=45.90 E-value=9.3 Score=31.23 Aligned_cols=54 Identities=22% Similarity=0.375 Sum_probs=33.2
Q ss_pred HHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCc-cEEEEEeC
Q psy16399 111 LEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGL-DLVLLSID 165 (165)
Q Consensus 111 ~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~-~l~~~~vd 165 (165)
+.+.+.|.+...+..+.+..+|+|||..=..+...|...++ .+.+| ++.++++|
T Consensus 44 ~~i~~~I~~~~~~~~~~~~~l~LsgGsTP~~ly~~L~~~~~-~~idw~~V~~f~~D 98 (312)
T 3e15_A 44 YYICHQIAEKQLSKEGGHVVIGLSGGKTPIDVYKNIALVKD-IKIDTSKLIFFIID 98 (312)
T ss_dssp HHHHHHHHHHHHHSTTCCCEEEECCSHHHHHHHHHHTTCCS-SCCCGGGCEEEESE
T ss_pred HHHHHHHHhhhhhhhCCCEEEEEeCCCCHHHHHHHHHHhhc-cCCCccceEEEEee
Confidence 34444555433455667899999999877777777764321 12454 36666654
No 108
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=45.87 E-value=43 Score=22.47 Aligned_cols=26 Identities=12% Similarity=0.190 Sum_probs=20.9
Q ss_pred CEEEEEecCCccHHHHHH-HHHHHhhh
Q psy16399 127 HRIAIAASGGKDSTVLAH-VLKVLNEK 152 (165)
Q Consensus 127 ~~vlvavSGG~DS~~Ll~-ll~~l~~~ 152 (165)
.+|+++.++|.-|+.|+. -+.+.-++
T Consensus 19 ~kIlvvC~sG~gTS~m~~~kl~~~~~~ 45 (110)
T 3czc_A 19 VKVLTACGNGMGSSMVIKMKVENALRQ 45 (110)
T ss_dssp EEEEEECCCCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCcHHHHHHHHHHHHHHHHH
Confidence 579999999999988888 77765444
No 109
>2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown function, ATC, S genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens} SCOP: a.28.1.1
Probab=45.61 E-value=9.9 Score=25.59 Aligned_cols=43 Identities=9% Similarity=0.163 Sum_probs=29.2
Q ss_pred hhhHHHHHHHHhcc-------ccCCCCEEEEEecCCccHHHHHHHHHHHhhhc
Q psy16399 108 AFELEIHHTIVTNK-------LFEKHHRIAIAASGGKDSTVLAHVLKVLNEKY 153 (165)
Q Consensus 108 ~~~~~v~~~i~~~~-------~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~ 153 (165)
.+..++.+.+.+.- -+.+...+. .-|.||+.++.++..+.+++
T Consensus 22 ~i~~~i~~il~~~l~~~v~~~~i~~d~~l~---dlGlDSL~~veLv~~lE~~f 71 (105)
T 2jq4_A 22 HMNATIREILAKFGQLPTPVDTIADEADLY---AAGLSSFASVQLMLGIEEAF 71 (105)
T ss_dssp -CHHHHHHHHHHTSCCSSCGGGCCTTSCGG---GGTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcccCCCCCCHh---hcCCCHHHHHHHHHHHHHHH
Confidence 46677777777741 122333333 56799999999999998874
No 110
>3nwp_A 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, hydrolase; HET: MSE P6G PG4; 1.40A {Shewanella baltica}
Probab=44.97 E-value=17 Score=28.09 Aligned_cols=38 Identities=18% Similarity=0.319 Sum_probs=26.8
Q ss_pred CCCCEEEEEecCCccHHHHHHHHHHHhhhccCCc-cEEEEEeC
Q psy16399 124 EKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGL-DLVLLSID 165 (165)
Q Consensus 124 ~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~-~l~~~~vd 165 (165)
..+.+..+|+|||..=..+...|.+- . .+| ++.+.++|
T Consensus 34 ~~~~~~~l~lsgGstp~~~y~~L~~~--~--idw~~v~~f~~D 72 (233)
T 3nwp_A 34 DARGKASLVVSGGSTPLKLFQLLSMK--S--IDWSDVYITLAD 72 (233)
T ss_dssp HHHSCEEEEECCSSTTHHHHHHHHHC--C--SCGGGEEEEESE
T ss_pred HhCCCEEEEEcCCCCHHHHHHHHHhc--C--CChhHeEEEeCe
Confidence 34567999999998878887777642 2 455 47777665
No 111
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=42.85 E-value=27 Score=23.44 Aligned_cols=26 Identities=12% Similarity=0.296 Sum_probs=19.6
Q ss_pred CEEEEEecCCccHHHHHHHHHHHhhh
Q psy16399 127 HRIAIAASGGKDSTVLAHVLKVLNEK 152 (165)
Q Consensus 127 ~~vlvavSGG~DS~~Ll~ll~~l~~~ 152 (165)
-+|+++.++|.-|+.|+.-+.+.-++
T Consensus 5 mkIlvvC~~G~~TSll~~kl~~~~~~ 30 (109)
T 2l2q_A 5 MNILLVCGAGMSTSMLVQRIEKYAKS 30 (109)
T ss_dssp EEEEEESSSSCSSCHHHHHHHHHHHH
T ss_pred eEEEEECCChHhHHHHHHHHHHHHHH
Confidence 46999999999988776666655444
No 112
>2kjs_A Putative acyl carrier protein; alpha, ACP, PNS, structural genomics, PSI-2, protein structure initiative; HET: PNS; NMR {Geobacter metallireducens gs-15} PDB: 2lml_A* 2kwm_A*
Probab=42.05 E-value=13 Score=24.26 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=17.2
Q ss_pred CCccHHHHHHHHHHHhhhc
Q psy16399 135 GGKDSTVLAHVLKVLNEKY 153 (165)
Q Consensus 135 GG~DS~~Ll~ll~~l~~~~ 153 (165)
.|.||+....++.++.+++
T Consensus 32 lg~DSL~~veli~~ie~~f 50 (87)
T 2kjs_A 32 DAWDSLSHMNLIVSLEVHY 50 (87)
T ss_dssp SCCCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHh
Confidence 5999999999999998874
No 113
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=41.72 E-value=29 Score=24.39 Aligned_cols=28 Identities=7% Similarity=0.114 Sum_probs=23.5
Q ss_pred CCCCEEEEEecCCccHHHHHHHHHHHhh
Q psy16399 124 EKHHRIAIAASGGKDSTVLAHVLKVLNE 151 (165)
Q Consensus 124 ~~~~~vlvavSGG~DS~~Ll~ll~~l~~ 151 (165)
..-.+|+|++.|+..|..++....++.+
T Consensus 15 ~~~~~ILv~vD~s~~s~~al~~A~~lA~ 42 (163)
T 1tq8_A 15 SAYKTVVVGTDGSDSSMRAVDRAAQIAG 42 (163)
T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHHHHT
T ss_pred ccCCEEEEEcCCCHHHHHHHHHHHHHhC
Confidence 3457999999999999988888877765
No 114
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=41.00 E-value=33 Score=22.92 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=21.1
Q ss_pred cCCC-CEEEEEe-cCCccHHHHHHHHHHH
Q psy16399 123 FEKH-HRIAIAA-SGGKDSTVLAHVLKVL 149 (165)
Q Consensus 123 ~~~~-~~vlvav-SGG~DS~~Ll~ll~~l 149 (165)
+.++ +.|+|-. .||..|..++.+|..+
T Consensus 85 ~~~~~~~ivvyC~~~G~rs~~a~~~L~~~ 113 (134)
T 3g5j_A 85 LALNYDNIVIYCARGGMRSGSIVNLLSSL 113 (134)
T ss_dssp HHTTCSEEEEECSSSSHHHHHHHHHHHHT
T ss_pred hccCCCeEEEEECCCChHHHHHHHHHHHc
Confidence 3455 7888888 5899999988888765
No 115
>2ju1_A Erythronolide synthase; carrier protein domain, modular polyketide synthase, alpha- helical bundle, acyltransferase; NMR {Saccharopolyspora erythraea} PDB: 2ju2_A
Probab=40.06 E-value=16 Score=23.28 Aligned_cols=21 Identities=24% Similarity=0.186 Sum_probs=17.7
Q ss_pred ecCCccHHHHHHHHHHHhhhc
Q psy16399 133 ASGGKDSTVLAHVLKVLNEKY 153 (165)
Q Consensus 133 vSGG~DS~~Ll~ll~~l~~~~ 153 (165)
+.=|.||+..+.+...+++..
T Consensus 48 ~~lG~DSL~a~~l~~~l~~~~ 68 (95)
T 2ju1_A 48 KELGFDSLAAVRLRNLLNAAT 68 (95)
T ss_dssp HHHTCSSHHHHHHHHHHGGGT
T ss_pred HHcCCcHHHHHHHHHHHHHHH
Confidence 455899999999999998773
No 116
>2cg5_B Fatty acid synthase; transferase-hydrolase complex, transferase/hydrolase (comple fatty acid biosynthesis, phosphopantetheine transferase; HET: COA; 2.7A {Homo sapiens} PDB: 2png_A
Probab=39.87 E-value=14 Score=24.48 Aligned_cols=42 Identities=14% Similarity=0.169 Sum_probs=26.8
Q ss_pred hhHHHHHHHHhc--cccCCCCEEEEEecCCccHHHHHHHHHHHhhhc
Q psy16399 109 FELEIHHTIVTN--KLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKY 153 (165)
Q Consensus 109 ~~~~v~~~i~~~--~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~ 153 (165)
+...|.+.+.-. .-+.+...+ ..=|.||+...-+.+.+.+.+
T Consensus 11 v~~~va~iLg~~~~~~I~~~~~l---~dLG~DSL~aVELr~~Le~~f 54 (91)
T 2cg5_B 11 LVEAVAHILGIRDLAAVNLDSSL---ADLGLDALMSVEVRQTLEREL 54 (91)
T ss_dssp HHHHHHHHTTCCSCTTSCTTSBT---TTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCchhhCCCCCCH---HHhCCcchHHHHHHHHHHHHH
Confidence 444555544321 223444433 478999999999999998773
No 117
>3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.33A {Neisseria gonorrhoeae}
Probab=39.78 E-value=21 Score=27.46 Aligned_cols=37 Identities=16% Similarity=0.283 Sum_probs=25.9
Q ss_pred CCCEEEEEecCCccHHHHHHHHHHHhhhccCCc-cEEEEEeC
Q psy16399 125 KHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGL-DLVLLSID 165 (165)
Q Consensus 125 ~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~-~l~~~~vd 165 (165)
.+.+..+|+|||.-=..+...|.+ .. .+| ++.+.++|
T Consensus 32 ~~~~~~l~lsgGstp~~~y~~L~~--~~--i~w~~v~~f~~D 69 (232)
T 3lhi_A 32 EKGGAVLAVSGGRSPIAFFNALSQ--KD--LDWKNVGITLAD 69 (232)
T ss_dssp HHSCEEEEECCSSTTHHHHHHHHT--SC--CCGGGEEEEESE
T ss_pred hCCCEEEEEeCCCCHHHHHHHHHh--cC--CCchheEEEEee
Confidence 346799999999877777777764 22 455 47777665
No 118
>2afd_A Protein ASL1650; twisted antiparallel helical bundle, acyl carrier protein FA structural genomics, PSI, protein structure initiative; NMR {Nostoc SP} PDB: 2afe_A
Probab=39.47 E-value=13 Score=23.15 Aligned_cols=20 Identities=15% Similarity=-0.001 Sum_probs=17.2
Q ss_pred cCCccHHHHHHHHHHHhhhc
Q psy16399 134 SGGKDSTVLAHVLKVLNEKY 153 (165)
Q Consensus 134 SGG~DS~~Ll~ll~~l~~~~ 153 (165)
.=|.||+.++.+...+++.+
T Consensus 42 ~lG~DSl~~~~l~~~l~~~~ 61 (88)
T 2afd_A 42 NYDLNSSKALILLGRLEKWL 61 (88)
T ss_dssp GTTCCSTHHHHHHHHHHHHT
T ss_pred HcCccHHHHHHHHHHHHHHH
Confidence 55889999999999998873
No 119
>2liu_A CURA; holo state, transferase; NMR {Lyngbya majuscula} PDB: 2liw_A*
Probab=38.91 E-value=15 Score=23.46 Aligned_cols=20 Identities=30% Similarity=0.315 Sum_probs=16.9
Q ss_pred cCCccHHHHHHHHHHHhhhc
Q psy16399 134 SGGKDSTVLAHVLKVLNEKY 153 (165)
Q Consensus 134 SGG~DS~~Ll~ll~~l~~~~ 153 (165)
.=|.||+.++.+...+++.+
T Consensus 49 ~lG~DSl~~~~l~~~l~~~~ 68 (99)
T 2liu_A 49 DLGLDSIVGVEWTTTINQTY 68 (99)
T ss_dssp HHTCCHHHHHHHHHHHHHHH
T ss_pred HhCccHHHHHHHHHHHHHHH
Confidence 45889999999999998764
No 120
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=37.63 E-value=81 Score=21.20 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=19.2
Q ss_pred CEEEEEecCCccHHHH-HHHHHHHhhh
Q psy16399 127 HRIAIAASGGKDSTVL-AHVLKVLNEK 152 (165)
Q Consensus 127 ~~vlvavSGG~DS~~L-l~ll~~l~~~ 152 (165)
.+|+++.+.|.-|+.| ..-+.+.-++
T Consensus 22 kkIlvvC~sG~gTS~ll~~kl~~~~~~ 48 (113)
T 1tvm_A 22 RKIIVACGGAVATSTMAAEEIKELCQS 48 (113)
T ss_dssp EEEEEESCSCSSHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCHHHHHHHHHHHHHHHHH
Confidence 4799999999998875 5566655444
No 121
>2cgq_A Acyl carrier protein ACPA; RV0033, protein transport, phosphopant; 1.83A {Mycobacterium tuberculosis}
Probab=36.48 E-value=19 Score=24.81 Aligned_cols=44 Identities=18% Similarity=0.292 Sum_probs=29.5
Q ss_pred hhhHHHHHHHHhccccCCCCEEEEEecCCccHHHHHHHHHHHhhhc
Q psy16399 108 AFELEIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKY 153 (165)
Q Consensus 108 ~~~~~v~~~i~~~~~~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~ 153 (165)
.+..++.+.|.+.--+.+...+ .-..|.||+.++.++..+.+++
T Consensus 30 ei~~~v~~il~e~l~I~~d~~l--~~dLGlDSLd~veLi~~LEe~F 73 (113)
T 2cgq_A 30 AINATIQRILRTDRGITANQVL--VDDLGFDSLKLFQLITELEDEF 73 (113)
T ss_dssp HHHHHHHHHHTCCSCCCTTCBT--TTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCch--hhhcCCCHHHHHHHHHHHHHHh
Confidence 4666777777664113333322 1268999999999999998874
No 122
>2kci_A Putative acyl carrier protein; alpha, ACP, PCP, structural genomics, unknown function, PSI- 2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 2kjs_A* 2lml_A* 2kwm_A*
Probab=36.38 E-value=12 Score=24.50 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=17.3
Q ss_pred CCccHHHHHHHHHHHhhhc
Q psy16399 135 GGKDSTVLAHVLKVLNEKY 153 (165)
Q Consensus 135 GG~DS~~Ll~ll~~l~~~~ 153 (165)
.|.||+.++.++..+.+++
T Consensus 32 lg~DSL~~veli~~lE~eF 50 (87)
T 2kci_A 32 DAWDSLSHMNLIVSLEVHY 50 (87)
T ss_dssp CCCCSTHHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHH
Confidence 7999999999999998774
No 123
>3ce7_A Specific mitochodrial acyl carrier protein; malaria, mitochondrial, ACP, fatty acid biosynthesis, lipid synthesis, phosphopantetheine; 1.64A {Toxoplasma}
Probab=35.43 E-value=16 Score=24.64 Aligned_cols=46 Identities=9% Similarity=-0.057 Sum_probs=28.4
Q ss_pred hhhHHHHHHHHhccc----cCCCCEEE-EE--ecCCccHHHHHHHHHHHhhhc
Q psy16399 108 AFELEIHHTIVTNKL----FEKHHRIA-IA--ASGGKDSTVLAHVLKVLNEKY 153 (165)
Q Consensus 108 ~~~~~v~~~i~~~~~----~~~~~~vl-va--vSGG~DS~~Ll~ll~~l~~~~ 153 (165)
.+..++.+.|.+.-- +.+...+. ++ -.-|.||+.++.++..+.+++
T Consensus 19 ~i~~~i~~il~e~l~~~~~i~~d~~l~~~~~~~dLglDSL~~veli~~lE~~f 71 (107)
T 3ce7_A 19 AVTNYIVGMCQKFLQKGEKVTPSSKLEELRTREDRLWDCLDTVEFVLDVEEIF 71 (107)
T ss_dssp HHHHHHHHHHHTTBCTTCCCCTTSCGGGSBBTTSSBCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccccCCCCcccccCcccccCCCHHHHHHHHHHHHHHH
Confidence 466777777776411 11112111 12 145999999999999998874
No 124
>1dny_A Non-ribosomal peptide synthetase peptidyl carrier protein; four-helix bundle, modular enzyme, domain, flexible region; NMR {Brevibacillus brevis} SCOP: a.28.1.2 PDB: 2gdw_A 2gdx_A 2gdy_A 2k2q_A
Probab=35.15 E-value=22 Score=22.92 Aligned_cols=21 Identities=19% Similarity=0.137 Sum_probs=17.8
Q ss_pred ecCCccHHHHHHHHHHHhhhc
Q psy16399 133 ASGGKDSTVLAHVLKVLNEKY 153 (165)
Q Consensus 133 vSGG~DS~~Ll~ll~~l~~~~ 153 (165)
+.=|-||+.++.+..+++++.
T Consensus 39 f~lGgdSL~a~~l~~~l~~~~ 59 (91)
T 1dny_A 39 FQIGGHSLKAMAVAAQVHREY 59 (91)
T ss_dssp TSSCCSSHHHHHHHHHHHHHC
T ss_pred HHcCCCHHHHHHHHHHHHHHH
Confidence 356789999999999998873
No 125
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=35.02 E-value=29 Score=22.97 Aligned_cols=31 Identities=19% Similarity=0.200 Sum_probs=28.4
Q ss_pred cchHHHHHHHHHHHHhCCchhhHHHHHhhhc
Q psy16399 53 AYRGHARTFLKHLEKIRPASIMDIIHSESKY 83 (165)
Q Consensus 53 ~~R~~~k~~l~~le~~~P~~k~~i~~a~~~~ 83 (165)
+.+.+++++|..|.++-|.+...|+.++.+.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et 81 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDT 81 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHc
Confidence 7889999999999999999999999999763
No 126
>2lki_A Putative uncharacterized protein; helical bundle, acyl carrier, phosphopantetheine, fatty acid biosynthesis, lipid synthesis, PSI-biology; HET: PNS; NMR {Nitrosomonas europaea}
Probab=32.98 E-value=21 Score=24.05 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=16.4
Q ss_pred CCc-cHHHHHHHHHHHhhhc
Q psy16399 135 GGK-DSTVLAHVLKVLNEKY 153 (165)
Q Consensus 135 GG~-DS~~Ll~ll~~l~~~~ 153 (165)
-|. ||+.++.++..+.+++
T Consensus 56 LGl~DSL~~veLi~~lE~~F 75 (105)
T 2lki_A 56 IPELDSMAVVNVITALEEYF 75 (105)
T ss_dssp BTTCCHHHHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHHh
Confidence 466 9999999999998874
No 127
>4i4d_A Peptide synthetase NRPS type II-PCP; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MLY; 2.10A {Streptomyces verticillus}
Probab=32.46 E-value=22 Score=22.86 Aligned_cols=20 Identities=15% Similarity=0.084 Sum_probs=17.3
Q ss_pred cCCccHHHHHHHHHHHhhhc
Q psy16399 134 SGGKDSTVLAHVLKVLNEKY 153 (165)
Q Consensus 134 SGG~DS~~Ll~ll~~l~~~~ 153 (165)
.=|-||+.++.+..++++++
T Consensus 42 ~lGgdSL~a~~l~~~l~~~~ 61 (93)
T 4i4d_A 42 ALGGNSIHAIXITNRVEELV 61 (93)
T ss_dssp TTTCCHHHHHHHHHHHHHHH
T ss_pred HcCCcHHHHHHHHHHHHHHh
Confidence 56889999999999998774
No 128
>1y89_A DEVB protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; HET: 2PE; 2.00A {Vibrio cholerae o1 biovar eltor str}
Probab=31.98 E-value=42 Score=25.63 Aligned_cols=40 Identities=20% Similarity=0.196 Sum_probs=24.3
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHhhhccCCc-cEEEEEeC
Q psy16399 126 HHRIAIAASGGKDSTVLAHVLKVLNEKYQYGL-DLVLLSID 165 (165)
Q Consensus 126 ~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~-~l~~~~vd 165 (165)
+....||+|||.-=..+...|.+...+...+| ++.++.+|
T Consensus 28 ~~~~~l~lsgGstp~~~~~~L~~~~~~~~~~w~~v~~f~~D 68 (238)
T 1y89_A 28 GQPVHISLSGGSTPKMLFKLLASQPYANDIQWKNLHFWWGD 68 (238)
T ss_dssp SSCEEEEECCSHHHHHHHHHHTSTTHHHHSCGGGEEEEESE
T ss_pred CCCEEEEECCCccHHHHHHHHHhhhhccCCChhHeEEEece
Confidence 55689999999766666666654321101344 47666654
No 129
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=31.89 E-value=1.1e+02 Score=22.80 Aligned_cols=37 Identities=11% Similarity=0.172 Sum_probs=27.0
Q ss_pred cCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEE
Q psy16399 123 FEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLS 163 (165)
Q Consensus 123 ~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~ 163 (165)
+.++| ++|++|.+-.+--++.++...+++ |..+++++
T Consensus 106 ~~~~D-v~I~iS~SG~t~~~i~~~~~Ak~~---G~~vI~IT 142 (243)
T 3cvj_A 106 VTNKD-VIMIISNSGRNTVPVEMAIESRNI---GAKVIAMT 142 (243)
T ss_dssp CCTTC-EEEEECSSCCSHHHHHHHHHHHHH---TCEEEEEE
T ss_pred CCCCC-EEEEEeCCCCCHHHHHHHHHHHHC---CCEEEEEe
Confidence 45555 788888777777778888777665 77777765
No 130
>2lte_A Specialized acyl carrier protein; APO protein, transferase; NMR {Pseudomonas aeruginosa}
Probab=36.43 E-value=11 Score=25.38 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=18.0
Q ss_pred ecCCccHHHHHHHHHHHhhhc
Q psy16399 133 ASGGKDSTVLAHVLKVLNEKY 153 (165)
Q Consensus 133 vSGG~DS~~Ll~ll~~l~~~~ 153 (165)
..-|.||+.++.++..+.+++
T Consensus 53 ~dLGlDSL~~veL~~~lE~~f 73 (103)
T 2lte_A 53 EDLAFDSLVVSELSLKLRKEF 73 (103)
Confidence 457899999999999998773
No 131
>2kng_A Protein LSR2; DNA-binding domain, immune response, DNA binding protein; NMR {Mycobacterium tuberculosis}
Probab=28.35 E-value=34 Score=20.82 Aligned_cols=17 Identities=12% Similarity=-0.078 Sum_probs=14.1
Q ss_pred HHHHHHHHHHcCCccee
Q psy16399 28 EKEIVMYAYYKKLVYFS 44 (165)
Q Consensus 28 E~ei~~ya~~~~lp~~~ 44 (165)
-.+|+.||..+|+++-.
T Consensus 15 ~~aIR~WAr~nG~~Vsd 31 (55)
T 2kng_A 15 SAAIREWARRNGHNVST 31 (55)
T ss_dssp HHHHHHHHHHTTCCCCS
T ss_pred hHHHHHHHHHcCCcCCC
Confidence 46999999999998543
No 132
>1vkr_A Mannitol-specific PTS system enzyme iiabc compone; phosphotransferase, transferase, kinase, sugar transport; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1vrv_A* 2few_B*
Probab=28.21 E-value=68 Score=22.19 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=20.0
Q ss_pred CEEEEEecCCccHHHHH-HHHHHHhhh
Q psy16399 127 HRIAIAASGGKDSTVLA-HVLKVLNEK 152 (165)
Q Consensus 127 ~~vlvavSGG~DS~~Ll-~ll~~l~~~ 152 (165)
.+|+++.++|.-|+.|+ .-+.+.-++
T Consensus 14 kkIlvVC~sGmgTS~ml~~klkk~~~e 40 (125)
T 1vkr_A 14 RKIIVACDAGMGSSAMGAGVLRKKIQD 40 (125)
T ss_dssp CEEEECCSSSSHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCcHHHHHHHHHHHHHHHHH
Confidence 58999999999999986 466654333
No 133
>2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR {Pseudomonas fluorescens}
Probab=28.09 E-value=35 Score=25.31 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=17.7
Q ss_pred cCCccHHHHHHHHHHHhhhc
Q psy16399 134 SGGKDSTVLAHVLKVLNEKY 153 (165)
Q Consensus 134 SGG~DS~~Ll~ll~~l~~~~ 153 (165)
.=|.||+.++.+..++++.+
T Consensus 54 ~lG~DSl~~~el~~~l~~~~ 73 (212)
T 2l22_A 54 ELGLDSVIAAQWIREINKHY 73 (212)
T ss_dssp HHTCCHHHHHHHHHHHHHHT
T ss_pred HhCCcHHHHHHHHHHHHHHH
Confidence 66999999999999998873
No 134
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=27.85 E-value=94 Score=21.31 Aligned_cols=41 Identities=10% Similarity=0.014 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHHcCCcceeCCCCCCCCcchHHHHHHHHHH
Q psy16399 25 YAYEKEIVMYAYYKKLVYFSTECIFAPNAYRGHARTFLKHL 65 (165)
Q Consensus 25 ~v~E~ei~~ya~~~~lp~~~~~CP~~~~~~R~~~k~~l~~l 65 (165)
.+.++++..++...+++++.+.+-..+.....-+..+++.+
T Consensus 140 ~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 140 KVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp CSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHHHHHH
Confidence 46788899999999999888776623334444444444443
No 135
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic effects, aldose-ketose isomerase multiple conformers, isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP: c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A 1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A
Probab=27.83 E-value=1.4e+02 Score=22.78 Aligned_cols=41 Identities=12% Similarity=0.199 Sum_probs=25.8
Q ss_pred CCCEEEEEecCCccHHHHHHHHHHHhhhccCCc-cEEEEEeC
Q psy16399 125 KHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGL-DLVLLSID 165 (165)
Q Consensus 125 ~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~-~l~~~~vd 165 (165)
.+....||+|||.-=..+...|.+...+.+.+| ++.++.+|
T Consensus 31 ~~~~~~i~lsgGsTp~~~~~~L~~~~~~~~~~~~~v~v~~ld 72 (266)
T 1fs5_A 31 ADRPFVLGLPTGGTPMTTYKALVEMHKAGQVSFKHVVTFNMD 72 (266)
T ss_dssp SSSCEEEEECCSSTTHHHHHHHHHHHHTTSCCCTTEEEEESE
T ss_pred ccCceEEEEcCCCCHHHHHHHHHHHhhcCCCChHHeEEEeCe
Confidence 345688999999987777777765422111233 46666554
No 136
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=27.47 E-value=87 Score=19.91 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=21.7
Q ss_pred cCCCCEEEEEecCCccHHHHHHHHHHH
Q psy16399 123 FEKHHRIAIAASGGKDSTVLAHVLKVL 149 (165)
Q Consensus 123 ~~~~~~vlvavSGG~DS~~Ll~ll~~l 149 (165)
+.+++.|++-..+|..|..++..|.+.
T Consensus 53 l~~~~~ivvyC~~g~rs~~a~~~L~~~ 79 (100)
T 3foj_A 53 FNDNETYYIICKAGGRSAQVVQYLEQN 79 (100)
T ss_dssp SCTTSEEEEECSSSHHHHHHHHHHHTT
T ss_pred CCCCCcEEEEcCCCchHHHHHHHHHHC
Confidence 456788999889999998888888654
No 137
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=26.99 E-value=95 Score=19.79 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=21.5
Q ss_pred cCCCCEEEEEecCCccHHHHHHHHHHH
Q psy16399 123 FEKHHRIAIAASGGKDSTVLAHVLKVL 149 (165)
Q Consensus 123 ~~~~~~vlvavSGG~DS~~Ll~ll~~l 149 (165)
+.+++.|++-..+|..|..++..|.+.
T Consensus 53 l~~~~~iv~yC~~g~rs~~a~~~L~~~ 79 (103)
T 3eme_A 53 FNKNEIYYIVCAGGVRSAKVVEYLEAN 79 (103)
T ss_dssp CCTTSEEEEECSSSSHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCChHHHHHHHHHHHC
Confidence 466778988888999998888888654
No 138
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=26.85 E-value=1e+02 Score=20.06 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=21.1
Q ss_pred cCCCCEEEEEecCCccHHHHHHHHHHH
Q psy16399 123 FEKHHRIAIAASGGKDSTVLAHVLKVL 149 (165)
Q Consensus 123 ~~~~~~vlvavSGG~DS~~Ll~ll~~l 149 (165)
+.+++.|++-..+|..|..++.+|.++
T Consensus 52 l~~~~~ivvyC~~G~rs~~aa~~L~~~ 78 (108)
T 3gk5_A 52 LERDKKYAVICAHGNRSAAAVEFLSQL 78 (108)
T ss_dssp SCTTSCEEEECSSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEEcCCCcHHHHHHHHHHHc
Confidence 466778888888899898888877654
No 139
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=26.83 E-value=21 Score=22.00 Aligned_cols=44 Identities=11% Similarity=0.018 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHHcCCcceeCCCCCCCCcchHHHHHHHHHHHHh
Q psy16399 25 YAYEKEIVMYAYYKKLVYFSTECIFAPNAYRGHARTFLKHLEKI 68 (165)
Q Consensus 25 ~v~E~ei~~ya~~~~lp~~~~~CP~~~~~~R~~~k~~l~~le~~ 68 (165)
-++|+++..|.+.+|=-..-..|--.-+--+.++-+.|+.|+++
T Consensus 9 ~~~e~~lL~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe~K 52 (59)
T 2xvc_A 9 MITERELLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKNK 52 (59)
T ss_dssp CCCHHHHHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 36899999999888854333333322234567777788877754
No 140
>3crd_A Raidd; caspase recruitment domain, apoptosis, homophilic interaction; NMR {Homo sapiens} SCOP: a.77.1.3
Probab=25.95 E-value=41 Score=22.21 Aligned_cols=32 Identities=13% Similarity=0.082 Sum_probs=28.8
Q ss_pred CCcchHHHHHHHHHHHHhCCchhhHHHHHhhh
Q psy16399 51 PNAYRGHARTFLKHLEKIRPASIMDIIHSESK 82 (165)
Q Consensus 51 ~~~~R~~~k~~l~~le~~~P~~k~~i~~a~~~ 82 (165)
..+.+.+++.+|..|..+-|.+...|+.++++
T Consensus 47 ~~t~~~k~~~Lld~L~~rG~~Af~~F~~aL~~ 78 (100)
T 3crd_A 47 QTTGLRKTMLLLDILPSRGPKAFDTFLDSLQE 78 (100)
T ss_dssp CSSSHHHHHHHHHHTTTSCSSCHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHh
Confidence 35788999999999999999999999999876
No 141
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=25.95 E-value=1.1e+02 Score=18.63 Aligned_cols=26 Identities=15% Similarity=0.379 Sum_probs=21.3
Q ss_pred CCCCEEEEEecCCccHHHHHHHHHHH
Q psy16399 124 EKHHRIAIAASGGKDSTVLAHVLKVL 149 (165)
Q Consensus 124 ~~~~~vlvavSGG~DS~~Ll~ll~~l 149 (165)
.+++.|++-..+|..|..++..|.++
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~ 64 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEM 64 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHT
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHc
Confidence 56778888888899998888888765
No 142
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=25.74 E-value=67 Score=26.60 Aligned_cols=47 Identities=15% Similarity=0.147 Sum_probs=25.6
Q ss_pred HHHHHHHHhccccCCCCEEE-EEecCCcc---HHHHHHHHHHHhhhccCCccEE
Q psy16399 111 LEIHHTIVTNKLFEKHHRIA-IAASGGKD---STVLAHVLKVLNEKYQYGLDLV 160 (165)
Q Consensus 111 ~~v~~~i~~~~~~~~~~~vl-vavSGG~D---S~~Ll~ll~~l~~~~~~~~~l~ 160 (165)
.+|...+..-..+++||+|. ||-|+|.+ .-.+-..+..|++ +|+++.
T Consensus 28 ~~~~~~~i~P~~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~---~G~~v~ 78 (371)
T 3tla_A 28 EMIQSHPLLAAPLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQR---KGFKLV 78 (371)
T ss_dssp ------CBCCCCCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHH---TTCEEE
T ss_pred HHHHhccCCCCCCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHh---CCCEEE
Confidence 34444444455578899884 58899874 3445455556653 366554
No 143
>1fh1_A NODF, nodulation protein F; ROOT nodulation factor, protein backbone fold, lipid binding protein; NMR {Rhizobium leguminosarum} SCOP: i.11.1.1
Probab=25.41 E-value=9.3 Score=24.79 Aligned_cols=25 Identities=44% Similarity=0.508 Sum_probs=12.2
Q ss_pred ecCCccHHHHHHHHHHHhhhccCCccE
Q psy16399 133 ASGGKDSTVLAHVLKVLNEKYQYGLDL 159 (165)
Q Consensus 133 vSGG~DS~~Ll~ll~~l~~~~~~~~~l 159 (165)
..-|.||+.++.++..+.++ +++++
T Consensus 39 ~dlg~DSl~~vel~~~lE~~--fgi~i 63 (92)
T 1fh1_A 39 TSLGIDSLGLADVLWDLEQL--YGIKI 63 (92)
T ss_dssp -------CTTTTHHHHHHHC-------
T ss_pred hhcCCChHHHHHHHHHHHHH--hCCcc
Confidence 45678999999999999887 44443
No 144
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=25.33 E-value=78 Score=19.01 Aligned_cols=31 Identities=13% Similarity=0.106 Sum_probs=27.0
Q ss_pred chHHHHHHHHHHHHhCCchhhHHHHHhhhcc
Q psy16399 54 YRGHARTFLKHLEKIRPASIMDIIHSESKYI 84 (165)
Q Consensus 54 ~R~~~k~~l~~le~~~P~~k~~i~~a~~~~~ 84 (165)
.|.+.++.+++|..-+|+....++.+.....
T Consensus 8 ~~~e~~~~~~~L~~MFP~lD~evI~~Vl~a~ 38 (54)
T 1p3q_Q 8 EENERKDTLNTLQNMFPDMDPSLIEDVCIAA 38 (54)
T ss_dssp HHHHHHHHHHHHHHHSTTSCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcccCCHHHHHHHHHHc
Confidence 5788999999999999999999998875544
No 145
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=25.19 E-value=1.5e+02 Score=19.60 Aligned_cols=27 Identities=11% Similarity=0.053 Sum_probs=20.9
Q ss_pred cCCCCEEEEEecCCcc--HHHHHHHHHHH
Q psy16399 123 FEKHHRIAIAASGGKD--STVLAHVLKVL 149 (165)
Q Consensus 123 ~~~~~~vlvavSGG~D--S~~Ll~ll~~l 149 (165)
+.+++.|+|-..+|.. |..++..|.+.
T Consensus 68 l~~~~~ivvyC~~g~r~~s~~a~~~L~~~ 96 (124)
T 3flh_A 68 LDPAKTYVVYDWTGGTTLGKTALLVLLSA 96 (124)
T ss_dssp SCTTSEEEEECSSSSCSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCchHHHHHHHHHHHc
Confidence 5677889998888888 67777777655
No 146
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=24.87 E-value=42 Score=21.67 Aligned_cols=56 Identities=13% Similarity=-0.029 Sum_probs=38.0
Q ss_pred HHHHHHHHHcCCcceeCCCC-CCCCcchHHHHHHHHHHHHhCCchhhHHHHHhhhcc
Q psy16399 29 KEIVMYAYYKKLVYFSTECI-FAPNAYRGHARTFLKHLEKIRPASIMDIIHSESKYI 84 (165)
Q Consensus 29 ~ei~~ya~~~~lp~~~~~CP-~~~~~~R~~~k~~l~~le~~~P~~k~~i~~a~~~~~ 84 (165)
+.|..+...+|+-......- .+..+.+.+++++|..+..+-|.+...|+.++.+..
T Consensus 25 ~~lld~L~~~~vlt~~~~e~I~~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~ 81 (94)
T 2p1h_A 25 SYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEG 81 (94)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHTSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCCCHHHHHHHHcCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcC
Confidence 44566666665532221100 113588899999999999988999999999987644
No 147
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=24.66 E-value=1.1e+02 Score=22.41 Aligned_cols=37 Identities=11% Similarity=0.198 Sum_probs=26.1
Q ss_pred cCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEE
Q psy16399 123 FEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLS 163 (165)
Q Consensus 123 ~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~ 163 (165)
+.++| ++|++|.+-.|--++..+...+++ |..+++++
T Consensus 112 ~~~~D-vvi~iS~SG~t~~~~~~~~~ak~~---g~~vi~iT 148 (201)
T 3trj_A 112 GNEDD-ILLVITTSGDSENILSAVEEAHDL---EMKVIALT 148 (201)
T ss_dssp CCTTC-EEEEECSSSCCHHHHHHHHHHHHT---TCEEEEEE
T ss_pred CCCCC-EEEEEeCCCCCHHHHHHHHHHHHC---CCcEEEEE
Confidence 45555 778887777777777778777654 77777775
No 148
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=24.63 E-value=74 Score=23.91 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=17.9
Q ss_pred CCCCEEEEEecCCccH--HHHHHHHHH
Q psy16399 124 EKHHRIAIAASGGKDS--TVLAHVLKV 148 (165)
Q Consensus 124 ~~~~~vlvavSGG~DS--~~Ll~ll~~ 148 (165)
..+...+|+++||.-| ++++..|.+
T Consensus 18 ~~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 18 NGGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3445688999998887 777777776
No 149
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=24.58 E-value=1.3e+02 Score=22.38 Aligned_cols=37 Identities=8% Similarity=0.365 Sum_probs=26.0
Q ss_pred cCCCCEEEEEecCCccHHHHHHHHHHHhh--hccCCccEEEEE
Q psy16399 123 FEKHHRIAIAASGGKDSTVLAHVLKVLNE--KYQYGLDLVLLS 163 (165)
Q Consensus 123 ~~~~~~vlvavSGG~DS~~Ll~ll~~l~~--~~~~~~~l~~~~ 163 (165)
+.++| ++|++|..-.+.-++.++...++ + |..+++++
T Consensus 104 ~~~~D-lvI~iS~SG~t~~~i~~~~~ak~~~~---Ga~vI~IT 142 (220)
T 3etn_A 104 LQEND-LLLLISNSGKTREIVELTQLAHNLNP---GLKFIVIT 142 (220)
T ss_dssp CCTTC-EEEEECSSSCCHHHHHHHHHHHHHCT---TCEEEEEE
T ss_pred CCCCC-EEEEEcCCCCCHHHHHHHHHHHhcCC---CCeEEEEE
Confidence 45555 77777776667777777877766 4 67777776
No 150
>2bkx_A Glucosamine-6-phosphate deaminase; hydrolase, substrate inhibition, fructose-6-phosphate; HET: F6R; 1.4A {Bacillus subtilis} PDB: 2bkv_A*
Probab=24.19 E-value=70 Score=24.07 Aligned_cols=40 Identities=10% Similarity=0.168 Sum_probs=24.1
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHhhhccCCc-cEEEEEeC
Q psy16399 126 HHRIAIAASGGKDSTVLAHVLKVLNEKYQYGL-DLVLLSID 165 (165)
Q Consensus 126 ~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~-~l~~~~vd 165 (165)
++...||+|||.-=..+...|.+.....+.++ ++.++.+|
T Consensus 27 ~~~~~i~lsgG~T~~~~~~~L~~~~~~~~~~~~~v~v~~ld 67 (242)
T 2bkx_A 27 KPDAVLGLATGGTPEGTYRQLIRLHQTENLSFQNITTVNLD 67 (242)
T ss_dssp CTTCEEEECCSSTTHHHHHHHHHHHHHSCCCCTTCEEEESE
T ss_pred CCCeEEEECCCCCHHHHHHHHHHHhhccCCChhheEEEeCc
Confidence 44578999999877777777765421111233 45655543
No 151
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=24.16 E-value=1.2e+02 Score=19.02 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=20.6
Q ss_pred cCCCCEEEEEecCCccHHHHHHHHHHH
Q psy16399 123 FEKHHRIAIAASGGKDSTVLAHVLKVL 149 (165)
Q Consensus 123 ~~~~~~vlvavSGG~DS~~Ll~ll~~l 149 (165)
+++ +.|++-..+|..|..++..|.+.
T Consensus 51 l~~-~~ivvyC~~g~rs~~a~~~L~~~ 76 (94)
T 1wv9_A 51 LPR-RPLLLVCEKGLLSQVAALYLEAE 76 (94)
T ss_dssp CCS-SCEEEECSSSHHHHHHHHHHHHH
T ss_pred CCC-CCEEEEcCCCChHHHHHHHHHHc
Confidence 456 78888888888888888888765
No 152
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=23.84 E-value=49 Score=26.94 Aligned_cols=27 Identities=19% Similarity=0.130 Sum_probs=24.5
Q ss_pred CcceeeccCCCCHHHHHHHHHHcCCcc
Q psy16399 16 SIPRCKPLKYAYEKEIVMYAYYKKLVY 42 (165)
Q Consensus 16 ~v~~IRPL~~v~E~ei~~ya~~~~lp~ 42 (165)
..-+|-||..-++.||-.|...+|+|+
T Consensus 190 ~~iKVnPL~dWT~~DVW~YI~~~~LPy 216 (308)
T 3fwk_A 190 DFYRLQPLLHWNLANIWSFLLYSNEPI 216 (308)
T ss_dssp SCEEECTTTTCCHHHHHHHHHHHTCCC
T ss_pred CeEEEechhhCCHHHHHHHHHHcCCCC
Confidence 356789999999999999999999986
No 153
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=23.78 E-value=1.3e+02 Score=21.07 Aligned_cols=43 Identities=5% Similarity=-0.035 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHHcCCcceeCCCCCCCCcchHHHHHHHHHHHH
Q psy16399 25 YAYEKEIVMYAYYKKLVYFSTECIFAPNAYRGHARTFLKHLEK 67 (165)
Q Consensus 25 ~v~E~ei~~ya~~~~lp~~~~~CP~~~~~~R~~~k~~l~~le~ 67 (165)
.+..++...++...+++++.+.+-...+....-+..+++.+.+
T Consensus 149 ~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 149 QVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRR 191 (196)
T ss_dssp CSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHHh
Confidence 3567888999999999888776655442455555555555543
No 154
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=23.65 E-value=53 Score=25.64 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=22.7
Q ss_pred CCCEEEEEecCCccHHHHHHHHHHHhh
Q psy16399 125 KHHRIAIAASGGKDSTVLAHVLKVLNE 151 (165)
Q Consensus 125 ~~~~vlvavSGG~DS~~Ll~ll~~l~~ 151 (165)
.-+-|++|.|=..++=+.++.+.++-+
T Consensus 133 ~V~EVIlAtnpTvEGEaTA~YI~~~Lk 159 (228)
T 1vdd_A 133 QGMEVILATGTTVEGDATALYLQRLLE 159 (228)
T ss_dssp TTCEEEECCCSSHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCchHHHHHHHHHHHHH
Confidence 347899999999999999998887643
No 155
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=23.63 E-value=37 Score=23.43 Aligned_cols=31 Identities=19% Similarity=0.260 Sum_probs=24.0
Q ss_pred CCCcceeeccCCCCHHHHHHHHHHcCCcceeC
Q psy16399 14 ADSIPRCKPLKYAYEKEIVMYAYYKKLVYFST 45 (165)
Q Consensus 14 ~~~v~~IRPL~~v~E~ei~~ya~~~~lp~~~~ 45 (165)
.|...-++ |.|-+.++-++||+.+|++|.-.
T Consensus 56 ~D~~~qv~-L~F~skE~AiayAek~G~~y~V~ 86 (108)
T 2lju_A 56 HDTKQQVC-LSFTTRELAIAYAVAHKIDYTVL 86 (108)
T ss_dssp CCCCCCSC-EEESSHHHHHHHHHHTTCEEEEE
T ss_pred CCccccce-EecCCHHHHHHHHHHcCCEEEEe
Confidence 34444443 88899999999999999998753
No 156
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=22.88 E-value=35 Score=23.50 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=25.2
Q ss_pred CCCcceeeccCCCCHHHHHHHHHHcCCcceeCC
Q psy16399 14 ADSIPRCKPLKYAYEKEIVMYAYYKKLVYFSTE 46 (165)
Q Consensus 14 ~~~v~~IRPL~~v~E~ei~~ya~~~~lp~~~~~ 46 (165)
.|...-++ |.|-+.++-++||+.+|++|.-.+
T Consensus 48 ~D~~~qv~-L~F~skE~AiayAek~G~~y~V~e 79 (106)
T 2jya_A 48 SDMKQQVK-LTFETQEQAEAYAQRKGIEYRVIL 79 (106)
T ss_dssp CCSEEEEE-EEESSHHHHHHHHHHHTCEEEECC
T ss_pred CCccccce-EecCCHHHHHHHHHHcCCEEEEeC
Confidence 44445554 888999999999999999987644
No 157
>2qv6_A MJ0145, GTP cyclohydrolase III, MJGC; enzyme, FAPY; HET: GTP; 2.00A {Methanocaldococcus jannaschii}
Probab=22.61 E-value=2.2e+02 Score=22.56 Aligned_cols=53 Identities=13% Similarity=0.252 Sum_probs=35.9
Q ss_pred hhHHHHHHHHhcccc--CCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEE
Q psy16399 109 FELEIHHTIVTNKLF--EKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVL 161 (165)
Q Consensus 109 ~~~~v~~~i~~~~~~--~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~ 161 (165)
+...+.+.+..++-+ .-.---++|++.|.|.-....++.+++++.|.++.+..
T Consensus 34 l~~~l~~~~~~~~g~~f~~R~D~~ia~tngi~~~~h~~i~~~i~~~~Pv~vs~~~ 88 (268)
T 2qv6_A 34 LYADLNLMFGAHKGLVFYTRFDNLIAITNGIDLITHKRIQESIRNRYPFTVSMVI 88 (268)
T ss_dssp HHHHHHHHHHTTTCEEECTTSSEEEEECTTCCHHHHHHHHHHHHHHSSSCEEEEE
T ss_pred HHHHHHHHHHhcCCEEeecccceEEEEeCCCCHHHHHHHHHHHhhcCCceEEEEE
Confidence 334444444444322 11223789999999999999999999999776665543
No 158
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=22.39 E-value=1.1e+02 Score=24.68 Aligned_cols=41 Identities=17% Similarity=0.250 Sum_probs=26.2
Q ss_pred CCCEEEEEecCCccH--HHHHHHHHHHhhhccCCccEEEEEeC
Q psy16399 125 KHHRIAIAASGGKDS--TVLAHVLKVLNEKYQYGLDLVLLSID 165 (165)
Q Consensus 125 ~~~~vlvavSGG~DS--~~Ll~ll~~l~~~~~~~~~l~~~~vd 165 (165)
.+...++|++|+.-| ++++..|..+-...+.+..+.++..|
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D 131 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTD 131 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeec
Confidence 456789999997766 88888888764322123345555543
No 159
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=21.96 E-value=1.6e+02 Score=20.64 Aligned_cols=37 Identities=16% Similarity=0.119 Sum_probs=26.4
Q ss_pred cCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEE
Q psy16399 123 FEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLS 163 (165)
Q Consensus 123 ~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~ 163 (165)
+.++ .++|++|.+-.+.-++.++...+++ |..+++++
T Consensus 85 ~~~~-d~~i~iS~sG~t~~~~~~~~~ak~~---g~~vi~IT 121 (187)
T 3sho_A 85 LRPT-DLMIGVSVWRYLRDTVAALAGAAER---GVPTMALT 121 (187)
T ss_dssp CCTT-EEEEEECCSSCCHHHHHHHHHHHHT---TCCEEEEE
T ss_pred CCCC-CEEEEEeCCCCCHHHHHHHHHHHHC---CCCEEEEe
Confidence 4444 4778888777777788888777654 77787776
No 160
>2x43_S Sherp; membrane protein; NMR {Leishmania major}
Probab=21.30 E-value=19 Score=22.45 Aligned_cols=9 Identities=44% Similarity=0.626 Sum_probs=7.0
Q ss_pred ecCCccHHH
Q psy16399 133 ASGGKDSTV 141 (165)
Q Consensus 133 vSGG~DS~~ 141 (165)
+|||.||-+
T Consensus 53 isgGsds~~ 61 (67)
T 2x43_S 53 LSGGSSSRA 61 (67)
T ss_dssp TTSCCCSST
T ss_pred hccCccccc
Confidence 589999854
No 161
>1vl1_A 6PGL, 6-phosphogluconolactonase; TM1154, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO hydrolase; HET: CIT; 1.55A {Thermotoga maritima} SCOP: c.124.1.1 PDB: 1pbt_A
Probab=21.28 E-value=77 Score=24.22 Aligned_cols=36 Identities=14% Similarity=0.277 Sum_probs=23.8
Q ss_pred CCEEEEEecCCccHHHHHHHHHHHhhhccCCc-cEEEEEeC
Q psy16399 126 HHRIAIAASGGKDSTVLAHVLKVLNEKYQYGL-DLVLLSID 165 (165)
Q Consensus 126 ~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~-~l~~~~vd 165 (165)
+....+|+|||.-=..+...|.+. +.+| ++.++++|
T Consensus 44 ~~~~~l~LsgGsTp~~ly~~L~~~----~i~w~~v~~f~~D 80 (232)
T 1vl1_A 44 KDKIFVVLAGGRTPLPVYEKLAEQ----KFPWNRIHFFLSD 80 (232)
T ss_dssp CSCEEEEECCSTTHHHHHHHHTTS----CCCGGGEEEEESE
T ss_pred CCCeEEEEcCCccHHHHHHHHHHc----CCChhHEEEEeCe
Confidence 456889999998777777766532 1344 46666554
No 162
>1s3a_A NADH-ubiquinone oxidoreductase B8 subunit; CI-B8, ndufa2, complex I; NMR {Homo sapiens} SCOP: c.47.1.22
Probab=21.21 E-value=55 Score=21.79 Aligned_cols=31 Identities=19% Similarity=0.224 Sum_probs=24.5
Q ss_pred CCCCCCCC--cchHHHHHHHHHHHHhCCchhhH
Q psy16399 45 TECIFAPN--AYRGHARTFLKHLEKIRPASIMD 75 (165)
Q Consensus 45 ~~CP~~~~--~~R~~~k~~l~~le~~~P~~k~~ 75 (165)
.-|+.++. +.|..++.-+.++.+.+|++...
T Consensus 25 ~yc~~~~sS~G~R~Fl~~~l~~~k~~NP~v~i~ 57 (102)
T 1s3a_A 25 HLCQRSPGSQGVRDFIEKRYVELKKANPDLPIL 57 (102)
T ss_dssp ECCSSSCCCHHHHHHHHHTHHHHHHHSTTCCEE
T ss_pred EEcCCCCCchhHHHHHHHhhHHHHHHCCCceEE
Confidence 46888754 67888888889999999988654
No 163
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=21.13 E-value=74 Score=19.94 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=14.6
Q ss_pred HHHHHHHhccccCCCCEEEEEecCC
Q psy16399 112 EIHHTIVTNKLFEKHHRIAIAASGG 136 (165)
Q Consensus 112 ~v~~~i~~~~~~~~~~~vlvavSGG 136 (165)
-+.+++++. +|.+|+||++|-
T Consensus 6 LLdktL~~W----Kg~rvAv~vg~e 26 (71)
T 1ycy_A 6 LLEKVLKEW----KGHKVAVSVGGD 26 (71)
T ss_dssp HHHHHHHHH----TTSEEEEEEC--
T ss_pred HHHHHHHHh----CCcEEEEEecCc
Confidence 355677774 688999999774
No 164
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=20.97 E-value=48 Score=20.43 Aligned_cols=15 Identities=20% Similarity=0.445 Sum_probs=12.0
Q ss_pred ccCCCCEEEE--EecCC
Q psy16399 122 LFEKHHRIAI--AASGG 136 (165)
Q Consensus 122 ~~~~~~~vlv--avSGG 136 (165)
.+++||.|.+ ++|||
T Consensus 58 ~l~~gDeV~i~PpvsGG 74 (74)
T 3rpf_C 58 PLKDGDVISLLPPVCGG 74 (74)
T ss_dssp CCCTTCEEEEECCBCCC
T ss_pred CCCCCCEEEEECCCCCC
Confidence 4678998777 89998
No 165
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=20.74 E-value=1.5e+02 Score=20.90 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=25.2
Q ss_pred cCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEE
Q psy16399 123 FEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLS 163 (165)
Q Consensus 123 ~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~ 163 (165)
+.++| ++|++|..-.+.-++.++...+++ |..+++++
T Consensus 77 ~~~~d-~vI~iS~sG~t~~~~~~~~~ak~~---g~~vi~IT 113 (186)
T 1m3s_A 77 LAEGD-LVIIGSGSGETKSLIHTAAKAKSL---HGIVAALT 113 (186)
T ss_dssp CCTTC-EEEEECSSSCCHHHHHHHHHHHHT---TCEEEEEE
T ss_pred CCCCC-EEEEEcCCCCcHHHHHHHHHHHHC---CCEEEEEE
Confidence 44444 777777766666677777776654 67777765
No 166
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=20.37 E-value=1.5e+02 Score=20.76 Aligned_cols=37 Identities=19% Similarity=0.352 Sum_probs=26.0
Q ss_pred cCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEE
Q psy16399 123 FEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLS 163 (165)
Q Consensus 123 ~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~ 163 (165)
+.++| ++|++|.+-.+--++.++...+++ |..+++++
T Consensus 94 ~~~~d-~vI~iS~sG~t~~~~~~~~~ak~~---g~~vi~IT 130 (183)
T 2xhz_A 94 VTPQD-VVIAISNSGESSEITALIPVLKRL---HVPLICIT 130 (183)
T ss_dssp CCTTC-EEEEECSSSCCHHHHHHHHHHHTT---TCCEEEEE
T ss_pred CCCCC-EEEEEeCCCCCHHHHHHHHHHHHC---CCCEEEEE
Confidence 44444 778887777777777888777654 67777775
No 167
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=20.33 E-value=45 Score=20.00 Aligned_cols=14 Identities=14% Similarity=0.420 Sum_probs=9.7
Q ss_pred cCCCCEEEE--EecCC
Q psy16399 123 FEKHHRIAI--AASGG 136 (165)
Q Consensus 123 ~~~~~~vlv--avSGG 136 (165)
+++||+|.+ ++|||
T Consensus 49 L~dgD~v~i~~~V~GG 64 (64)
T 2cu3_A 49 LRDGDVVEVVALMQGG 64 (64)
T ss_dssp CCTTCEEEEEECCCC-
T ss_pred CCCCCEEEEEeecccC
Confidence 677887655 78887
No 168
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=20.08 E-value=1.5e+02 Score=21.41 Aligned_cols=37 Identities=19% Similarity=0.378 Sum_probs=26.8
Q ss_pred cCCCCEEEEEecCCccHHHHHHHHHHHhhhccCCccEEEEE
Q psy16399 123 FEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLS 163 (165)
Q Consensus 123 ~~~~~~vlvavSGG~DS~~Ll~ll~~l~~~~~~~~~l~~~~ 163 (165)
+.++| ++|++|..-.+.-++.++...+++ +..+++++
T Consensus 87 ~~~~D-vvI~iS~SG~t~~~i~~~~~ak~~---g~~vI~IT 123 (200)
T 1vim_A 87 ITDQD-VLVGISGSGETTSVVNISKKAKDI---GSKLVAVT 123 (200)
T ss_dssp CCTTC-EEEEECSSSCCHHHHHHHHHHHHH---TCEEEEEE
T ss_pred CCCCC-EEEEEeCCCCcHHHHHHHHHHHHC---CCeEEEEE
Confidence 34444 888888877777788888777665 67777776
Done!