RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16399
(165 letters)
>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex
aeolicus [TaxId: 63363]}
Length = 216
Score = 44.2 bits (103), Expect = 1e-06
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 112 EIHHTIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKY 153
++ K+F R+ IA SGG DS VL VL L +
Sbjct: 10 KVLALQNDEKIFSGERRVLIAFSGGVDSVVLTDVLLKLKNYF 51
Score = 32.6 bits (73), Expect = 0.012
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 20 CKPLKYAYEKEIVMYAYYKKLVYFSTECIFAPNAYRGHAR-TFLKHLEKI 68
+PL Y EI YA +K L + E + + R R + L++I
Sbjct: 166 RRPLYYVKRSEIEEYAKFKGLRWVEDETNYEVSIPRNRIRHRVIPELKRI 215
>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 227
Score = 44.3 bits (103), Expect = 1e-06
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 116 TIVTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165
T+ N+ +I +A SGG DSTVL H L G+ L + +
Sbjct: 3 TLTLNRQLLTSRQILVAFSGGLDSTVLLHQLVQW-RTENPGVALRAIHVH 51
>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal
domain {Thermus thermophilus [TaxId: 274]}
Length = 165
Score = 34.7 bits (78), Expect = 0.002
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 128 RIAIAASGGKDSTVLAHVLK 147
+I +A SGG D++++ LK
Sbjct: 2 KIVLAYSGGLDTSIILKWLK 21
>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI,
C-terminal domain {Bacillus anthracis [TaxId: 1392]}
Length = 218
Score = 34.5 bits (78), Expect = 0.003
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 6/38 (15%)
Query: 128 RIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165
++ + SGG DS V A++ + G+ + +
Sbjct: 6 KVMVLLSGGIDSPVAAYLTM------KRGVSVEAVHFH 37
>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 168
Score = 34.3 bits (77), Expect = 0.003
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 127 HRIAIAASGGKDSTVLAHVLKVLN 150
++ +A SGG D++V+ L
Sbjct: 2 EKVVLAYSGGLDTSVILKWLCEKG 25
>d1zuna1 c.26.2.2 (A:1-211) Sulfate adenylyltransferase subunit 2,
CysD {Pseudomonas syringae pv. tomato [TaxId: 323]}
Length = 211
Score = 32.3 bits (72), Expect = 0.018
Identities = 7/45 (15%), Positives = 18/45 (40%)
Query: 121 KLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165
++ + + S GKDS V+ H+ + + ++ +
Sbjct: 21 EVAAEFDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTR 65
>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 188
Score = 30.0 bits (66), Expect = 0.11
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 128 RIAIAASGGKDSTVLAHVLK 147
RI IA SGG D++ ++
Sbjct: 12 RIGIAFSGGLDTSAALLWMR 31
>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Spinach (Spinacia oleracea)
[TaxId: 3562]}
Length = 172
Score = 28.8 bits (64), Expect = 0.24
Identities = 8/57 (14%), Positives = 19/57 (33%), Gaps = 3/57 (5%)
Query: 101 CKECFFHAFELEIHHTI--VTNKLFEKHHRIAIAASGGKDSTV-LAHVLKVLNEKYQ 154
K + +I + V + + I AS + + + ++ K+Q
Sbjct: 116 KKVLITAPGKGDIPTYVVGVNEEGYTHADTIISNASNEWGYSQRVVDLADIVANKWQ 172
>d1q15a2 d.153.1.1 (A:2-205) beta-Lactam synthetase {Pectobacterium
carotovorum [TaxId: 554]}
Length = 204
Score = 28.0 bits (62), Expect = 0.46
Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 8/71 (11%)
Query: 21 KPLKYAYEKEIVMYAYYK--------KLVYFSTECIFAPNAYRGHARTFLKHLEKIRPAS 72
P+ K+ M K ++F E + + R T +K+ ++++P +
Sbjct: 124 SPVHVVQGKKAWMTNSLKLVTAAEGEGALWFEEEALVCQSLMRADTYTPVKNAQRLKPGA 183
Query: 73 IMDIIHSESKY 83
+ + H Y
Sbjct: 184 VHVLTHDSEGY 194
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli
[TaxId: 562]}
Length = 308
Score = 28.1 bits (62), Expect = 0.48
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 129 IAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165
I+IA S + A VL+ L ++ + L++ D
Sbjct: 83 ISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTD 119
>d2d13a1 c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 226
Score = 28.0 bits (62), Expect = 0.50
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 6/35 (17%)
Query: 128 RIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLL 162
+A+ SGGKDS + + GL + L
Sbjct: 5 DVAVLYSGGKDSNYALYWAL------KSGLRVRYL 33
>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC
{Erwinia carotovora [TaxId: 554]}
Length = 230
Score = 28.0 bits (61), Expect = 0.54
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 6/38 (15%)
Query: 128 RIAIAASGGKDSTVLAHVLKVLNEKYQYGLDLVLLSID 165
R + SGG+DST Q D+ ++ D
Sbjct: 3 RAVVVFSGGQDSTTCLIQAL------QDYDDVHCITFD 34
>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain
{Escherichia coli [TaxId: 562]}
Length = 197
Score = 27.0 bits (58), Expect = 1.1
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 125 KHHRIAIAASGGKDSTVLAHVL 146
++ + SGG DS+V A +L
Sbjct: 19 GDDKVILGLSGGVDSSVTAMLL 40
>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {South China Sea lobster
(Palinurus versicolor) [TaxId: 150436]}
Length = 169
Score = 26.4 bits (58), Expect = 1.5
Identities = 7/55 (12%), Positives = 18/55 (32%), Gaps = 4/55 (7%)
Query: 101 CKECFFHAFELEIHHTI--VTNKLFEKHHRIAIAASGGKDSTVLAHVLKVLNEKY 153
K+ A + + V + + K ++ AS + V+ ++
Sbjct: 112 AKKVIISAPSADAPMFVCGVNLEKYSKDMKVVSNASN--EFGYSQRVIDLIKHMQ 164
>d1sura_ c.26.2.2 (A:) Phosphoadenylyl sulphate (PAPS) reductase
{Escherichia coli [TaxId: 562]}
Length = 215
Score = 26.2 bits (57), Expect = 1.8
Identities = 4/20 (20%), Positives = 10/20 (50%)
Query: 128 RIAIAASGGKDSTVLAHVLK 147
+++S G + V H++
Sbjct: 46 EYVLSSSFGIQAAVSLHLVN 65
>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}
Length = 168
Score = 25.9 bits (56), Expect = 2.3
Identities = 8/56 (14%), Positives = 16/56 (28%), Gaps = 4/56 (7%)
Query: 101 CKECFFHAFELEIHHT---IVTNKLFEKHHRIAIAASGGKDST-VLAHVLKVLNEK 152
K + E + H I AS +A +++++ K
Sbjct: 112 KKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASNEWGYANRVADLVELVLRK 167
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 26.0 bits (55), Expect = 3.0
Identities = 4/35 (11%), Positives = 11/35 (31%)
Query: 107 HAFELEIHHTIVTNKLFEKHHRIAIAASGGKDSTV 141
+ +HH V + + + A+ +
Sbjct: 57 FVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDL 91
>d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase
MurC {Haemophilus influenzae [TaxId: 727]}
Length = 215
Score = 25.2 bits (54), Expect = 3.6
Identities = 7/29 (24%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 121 KLFEKHHRIAIAASGGKDSTV--LAHVLK 147
++ H IA+A + GK +T ++ +
Sbjct: 7 EIMRFRHGIAVAGTHGKTTTTAMISMIYT 35
>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase
MurC {Thermotoga maritima [TaxId: 2336]}
Length = 207
Score = 25.4 bits (54), Expect = 3.7
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 124 EKHHRIAIAASGGKDSTV--LAHVLK 147
EK A+ + GK +T +AHVLK
Sbjct: 12 EKKEEFAVTGTDGKTTTTAMVAHVLK 37
>d1w2ya_ a.204.1.1 (A:) Type II deoxyuridine triphosphatase
{Campylobacter jejuni [TaxId: 197]}
Length = 229
Score = 25.1 bits (54), Expect = 4.3
Identities = 9/53 (16%), Positives = 16/53 (30%)
Query: 45 TECIFAPNAYRGHARTFLKHLEKIRPASIMDIIHSESKYIEKNPANFNRPKTG 97
I + + + L + +++ YI KN N R G
Sbjct: 134 ELIIHKCSGFGFNLGELLSTYFTLAIKCGLNLEILYKTYIGKNVLNIFRQNNG 186
>d1q15a1 c.26.2.1 (A:206-501) beta-Lactam synthetase {Pectobacterium
carotovorum [TaxId: 554]}
Length = 296
Score = 25.3 bits (54), Expect = 4.6
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 128 RIAIAASGGKDSTVLAHVLKVLNEK 152
+ I SGG DS+++ + +K
Sbjct: 35 TVGIPLSGGLDSSLVTALASRHFKK 59
>d1lj8a3 a.100.1.9 (A:287-492) Mannitol 2-dehydrogenase {Pseudomonas
fluorescens [TaxId: 294]}
Length = 206
Score = 23.9 bits (51), Expect = 9.4
Identities = 14/109 (12%), Positives = 33/109 (30%), Gaps = 9/109 (8%)
Query: 31 IVMYAYYKKLVYFSTECIFAPNAYRGHARTFLKHLEKIRPASIMDIIHSESKYIEKNPAN 90
+ + K + E + P + + R ++ + P + Y +
Sbjct: 20 LTYLGFLKGYRFVH-ETMNDP-LFVAYMRAYMDL--DVTPNLAPVPGIDLTDYKQTLVDR 75
Query: 91 FNRPKTGDTLCKECFFHAFELEIHHTIVTNKLFE-----KHHRIAIAAS 134
F+ D L + C + + N+L + + +AA
Sbjct: 76 FSNQAIADQLERVCSDGSSKFPKFTVPTINRLIADGRETERAALVVAAW 124
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.421
Gapped
Lambda K H
0.267 0.0557 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 634,145
Number of extensions: 28103
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 35
Length of query: 165
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 86
Effective length of database: 1,322,926
Effective search space: 113771636
Effective search space used: 113771636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.0 bits)