Query psy164
Match_columns 161
No_of_seqs 145 out of 1757
Neff 10.6
Searched_HMMs 46136
Date Fri Aug 16 20:20:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy164.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/164hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 100.0 3.4E-33 7.3E-38 179.4 17.8 150 5-159 10-159 (160)
2 KOG0027|consensus 100.0 8.7E-30 1.9E-34 166.2 18.4 150 8-157 1-150 (151)
3 KOG0028|consensus 100.0 1.8E-28 3.9E-33 154.5 16.4 151 3-157 21-171 (172)
4 PTZ00183 centrin; Provisional 100.0 4.2E-26 9.1E-31 149.9 18.8 152 4-159 6-157 (158)
5 KOG0030|consensus 99.9 1.6E-25 3.4E-30 138.1 14.2 146 8-156 4-151 (152)
6 KOG0031|consensus 99.9 5.9E-25 1.3E-29 137.8 16.7 143 8-158 25-167 (171)
7 PTZ00184 calmodulin; Provision 99.9 6.2E-25 1.3E-29 142.9 17.7 146 7-156 3-148 (149)
8 KOG0034|consensus 99.9 3.4E-21 7.4E-26 128.0 14.7 144 9-160 27-179 (187)
9 KOG0037|consensus 99.9 4.2E-20 9.1E-25 122.7 15.2 132 14-156 56-188 (221)
10 KOG0036|consensus 99.8 4.4E-19 9.6E-24 127.5 15.3 143 7-159 6-149 (463)
11 KOG0044|consensus 99.8 5.3E-19 1.1E-23 117.7 13.8 146 7-159 21-178 (193)
12 PLN02964 phosphatidylserine de 99.7 1.9E-15 4E-20 116.8 13.9 121 7-136 135-273 (644)
13 KOG4223|consensus 99.6 1.9E-14 4E-19 101.1 9.7 141 13-153 161-302 (325)
14 cd05022 S-100A13 S-100A13: S-1 99.6 9E-15 2E-19 86.3 6.9 67 91-157 7-76 (89)
15 PF13499 EF-hand_7: EF-hand do 99.5 5E-14 1.1E-18 79.2 7.4 62 93-154 1-66 (66)
16 KOG0377|consensus 99.5 1.4E-13 3.1E-18 100.3 11.5 140 15-156 464-615 (631)
17 KOG0038|consensus 99.5 5.7E-13 1.2E-17 83.5 12.1 145 9-161 22-182 (189)
18 cd05027 S-100B S-100B: S-100B 99.5 3E-13 6.4E-18 80.0 7.8 67 91-157 7-80 (88)
19 KOG0037|consensus 99.4 1.4E-12 3.1E-17 87.1 9.9 88 14-112 123-210 (221)
20 cd05022 S-100A13 S-100A13: S-1 99.4 1.3E-12 2.8E-17 77.2 8.0 71 11-81 4-77 (89)
21 KOG0027|consensus 99.4 3.9E-12 8.4E-17 83.0 11.0 102 51-157 8-114 (151)
22 KOG4223|consensus 99.4 1.8E-12 3.9E-17 91.2 9.2 146 13-158 75-230 (325)
23 KOG0044|consensus 99.4 9.1E-12 2E-16 83.2 12.1 123 30-158 7-130 (193)
24 COG5126 FRQ1 Ca2+-binding prot 99.4 1.5E-11 3.3E-16 79.6 11.9 103 51-159 20-123 (160)
25 PF13499 EF-hand_7: EF-hand do 99.4 2.7E-12 5.8E-17 72.1 7.3 62 16-77 1-66 (66)
26 cd05029 S-100A6 S-100A6: S-100 99.4 2.6E-12 5.7E-17 75.9 7.2 66 92-157 10-80 (88)
27 cd05027 S-100B S-100B: S-100B 99.4 7E-12 1.5E-16 74.1 9.0 70 12-81 5-81 (88)
28 PTZ00183 centrin; Provisional 99.4 2.5E-11 5.5E-16 79.5 12.0 101 51-156 17-118 (158)
29 smart00027 EH Eps15 homology d 99.4 1.4E-11 2.9E-16 74.3 9.4 72 8-81 3-74 (96)
30 cd05031 S-100A10_like S-100A10 99.4 5.3E-12 1.2E-16 75.8 7.5 67 91-157 7-80 (94)
31 PF13833 EF-hand_8: EF-hand do 99.4 4.1E-12 8.9E-17 68.4 6.2 52 105-156 1-53 (54)
32 cd05026 S-100Z S-100Z: S-100Z 99.3 6.5E-12 1.4E-16 75.2 7.5 65 92-156 10-81 (93)
33 cd05025 S-100A1 S-100A1: S-100 99.3 8.1E-12 1.8E-16 74.7 7.7 67 91-157 8-81 (92)
34 PTZ00184 calmodulin; Provision 99.3 5.5E-11 1.2E-15 77.0 11.9 101 51-156 11-112 (149)
35 KOG0040|consensus 99.3 1.4E-11 3E-16 100.6 10.0 141 4-155 2242-2397(2399)
36 cd00052 EH Eps15 homology doma 99.3 1.7E-11 3.7E-16 68.9 6.8 61 95-157 2-62 (67)
37 smart00027 EH Eps15 homology d 99.3 1.8E-11 3.9E-16 73.8 7.3 66 89-156 7-72 (96)
38 cd00051 EFh EF-hand, calcium b 99.3 5.8E-11 1.3E-15 65.2 7.8 62 94-155 2-63 (63)
39 cd00213 S-100 S-100: S-100 dom 99.3 3.3E-11 7.1E-16 71.5 7.0 67 91-157 7-80 (88)
40 cd05025 S-100A1 S-100A1: S-100 99.3 9E-11 2E-15 70.2 8.8 69 12-80 6-81 (92)
41 cd00213 S-100 S-100: S-100 dom 99.3 6.7E-11 1.5E-15 70.2 8.1 70 11-80 4-80 (88)
42 cd05023 S-100A11 S-100A11: S-1 99.2 7.1E-11 1.5E-15 69.9 7.8 67 91-157 8-81 (89)
43 cd05029 S-100A6 S-100A6: S-100 99.2 1.2E-10 2.6E-15 68.8 8.7 70 11-80 6-80 (88)
44 cd05031 S-100A10_like S-100A10 99.2 1.2E-10 2.5E-15 70.0 8.6 69 12-80 5-80 (94)
45 KOG0028|consensus 99.2 3.3E-10 7.1E-15 72.3 10.8 104 51-159 33-137 (172)
46 cd05026 S-100Z S-100Z: S-100Z 99.2 3E-10 6.5E-15 68.0 8.8 70 12-81 7-83 (93)
47 cd00252 SPARC_EC SPARC_EC; ext 99.2 1.9E-10 4.2E-15 71.2 7.6 64 90-158 46-109 (116)
48 PF14658 EF-hand_9: EF-hand do 99.2 1.9E-10 4E-15 63.2 6.5 61 96-156 2-64 (66)
49 KOG2643|consensus 99.2 5.4E-10 1.2E-14 81.8 10.6 130 17-156 320-453 (489)
50 cd00052 EH Eps15 homology doma 99.1 3.6E-10 7.7E-15 63.4 7.2 61 18-80 2-62 (67)
51 PLN02964 phosphatidylserine de 99.1 1E-09 2.3E-14 85.4 11.8 120 30-157 119-244 (644)
52 PF13833 EF-hand_8: EF-hand do 99.1 4.9E-10 1.1E-14 60.2 6.8 52 28-79 1-53 (54)
53 cd00051 EFh EF-hand, calcium b 99.1 1.2E-09 2.5E-14 59.9 7.2 61 17-77 2-62 (63)
54 cd05030 calgranulins Calgranul 99.1 9.4E-10 2E-14 65.1 6.7 66 92-157 8-80 (88)
55 KOG0034|consensus 99.0 4.4E-09 9.4E-14 70.4 10.2 104 18-121 69-176 (187)
56 cd05023 S-100A11 S-100A11: S-1 99.0 3.9E-09 8.3E-14 62.5 8.9 70 11-80 5-81 (89)
57 PF14658 EF-hand_9: EF-hand do 99.0 2.2E-09 4.8E-14 59.0 6.8 62 19-80 2-65 (66)
58 cd00252 SPARC_EC SPARC_EC; ext 98.9 7.9E-09 1.7E-13 64.0 7.8 65 9-77 42-106 (116)
59 KOG0031|consensus 98.9 8.7E-09 1.9E-13 65.5 7.1 62 89-154 29-90 (171)
60 cd05030 calgranulins Calgranul 98.9 2.4E-08 5.2E-13 59.1 7.7 70 12-81 5-81 (88)
61 KOG0041|consensus 98.9 1.3E-08 2.8E-13 67.5 7.0 66 91-156 98-163 (244)
62 KOG0041|consensus 98.8 7E-08 1.5E-12 64.1 9.5 108 8-118 92-201 (244)
63 PF00036 EF-hand_1: EF hand; 98.8 8.8E-09 1.9E-13 47.7 3.7 29 93-121 1-29 (29)
64 KOG0036|consensus 98.7 4.4E-07 9.6E-12 66.5 11.6 126 14-154 50-181 (463)
65 KOG2562|consensus 98.7 3E-07 6.6E-12 68.2 10.8 136 9-152 272-420 (493)
66 KOG0030|consensus 98.7 1.1E-07 2.4E-12 59.6 6.6 63 14-77 87-149 (152)
67 KOG2643|consensus 98.7 2.8E-07 6E-12 67.9 9.5 130 16-155 234-383 (489)
68 PF13405 EF-hand_6: EF-hand do 98.7 4.9E-08 1.1E-12 46.1 3.7 30 93-122 1-31 (31)
69 cd05024 S-100A10 S-100A10: A s 98.6 5.8E-07 1.3E-11 52.9 7.9 64 92-156 8-76 (91)
70 KOG4666|consensus 98.6 6.2E-08 1.3E-12 68.8 4.5 121 29-159 241-362 (412)
71 PF00036 EF-hand_1: EF hand; 98.6 1.1E-07 2.3E-12 44.1 3.7 29 16-44 1-29 (29)
72 KOG4251|consensus 98.5 4.4E-07 9.5E-12 62.3 7.3 141 13-153 196-342 (362)
73 KOG0169|consensus 98.5 2.3E-06 5E-11 67.1 12.0 144 5-157 126-275 (746)
74 PF12763 EF-hand_4: Cytoskelet 98.5 8.8E-07 1.9E-11 53.8 7.8 65 88-155 6-70 (104)
75 KOG0751|consensus 98.5 4.6E-06 9.9E-11 62.7 12.4 107 8-121 26-137 (694)
76 PF12763 EF-hand_4: Cytoskelet 98.5 8.7E-07 1.9E-11 53.8 7.1 70 8-80 3-72 (104)
77 PF13405 EF-hand_6: EF-hand do 98.5 2.9E-07 6.2E-12 43.4 3.7 30 16-45 1-31 (31)
78 cd05024 S-100A10 S-100A10: A s 98.4 5.6E-06 1.2E-10 48.8 9.0 69 12-81 5-78 (91)
79 PRK12309 transaldolase/EF-hand 98.4 2.2E-06 4.8E-11 63.8 8.1 55 89-156 331-385 (391)
80 KOG4251|consensus 98.4 7.5E-07 1.6E-11 61.2 5.0 144 13-156 99-264 (362)
81 KOG0751|consensus 98.4 2.6E-06 5.6E-11 64.0 8.0 124 18-153 111-241 (694)
82 KOG1707|consensus 98.3 1.4E-05 3E-10 61.4 11.6 145 5-155 185-376 (625)
83 PF14788 EF-hand_10: EF hand; 98.3 4.5E-06 9.7E-11 43.4 5.8 50 31-80 1-50 (51)
84 PF13202 EF-hand_5: EF hand; P 98.3 1.3E-06 2.8E-11 38.9 3.1 25 94-118 1-25 (25)
85 PF14788 EF-hand_10: EF hand; 98.3 5.4E-06 1.2E-10 43.1 5.5 48 109-156 2-49 (51)
86 KOG0046|consensus 98.1 1.8E-05 3.9E-10 59.9 8.2 75 6-81 10-87 (627)
87 KOG0038|consensus 98.1 1.8E-05 4E-10 50.2 6.9 100 19-122 75-179 (189)
88 KOG1029|consensus 98.1 0.00015 3.2E-09 57.6 13.0 144 7-155 8-256 (1118)
89 PF13202 EF-hand_5: EF hand; P 98.1 7E-06 1.5E-10 36.5 3.1 25 17-41 1-25 (25)
90 KOG0040|consensus 97.9 3.1E-05 6.7E-10 65.1 6.7 68 91-158 2252-2326(2399)
91 KOG2562|consensus 97.9 0.00025 5.4E-09 53.2 10.6 137 17-156 176-343 (493)
92 KOG0377|consensus 97.9 6.4E-05 1.4E-09 56.0 7.4 65 16-80 548-616 (631)
93 PF10591 SPARC_Ca_bdg: Secrete 97.9 5.5E-06 1.2E-10 51.2 1.5 62 89-152 51-112 (113)
94 PRK12309 transaldolase/EF-hand 97.9 5.9E-05 1.3E-09 56.4 6.9 54 14-80 333-386 (391)
95 PF09279 EF-hand_like: Phospho 97.8 7.2E-05 1.6E-09 43.6 5.5 64 93-157 1-70 (83)
96 KOG0046|consensus 97.7 0.00022 4.8E-09 54.2 7.1 65 91-156 18-85 (627)
97 PF10591 SPARC_Ca_bdg: Secrete 97.6 2.3E-05 5.1E-10 48.4 0.8 63 12-76 51-113 (113)
98 smart00054 EFh EF-hand, calciu 97.4 0.00026 5.6E-09 31.6 3.1 27 94-120 2-28 (29)
99 KOG0035|consensus 97.4 0.0038 8.2E-08 50.9 10.9 106 6-116 738-848 (890)
100 PF05042 Caleosin: Caleosin re 97.3 0.0065 1.4E-07 40.0 9.6 103 15-118 7-164 (174)
101 KOG4065|consensus 97.2 0.0014 3E-08 40.1 5.4 62 92-153 67-142 (144)
102 smart00054 EFh EF-hand, calciu 97.2 0.00059 1.3E-08 30.4 3.0 27 17-43 2-28 (29)
103 KOG1265|consensus 97.1 0.016 3.5E-07 47.3 11.6 122 25-157 158-300 (1189)
104 KOG4666|consensus 96.9 0.0049 1.1E-07 44.5 6.7 104 13-122 257-361 (412)
105 KOG0042|consensus 96.8 0.0047 1E-07 47.9 6.4 79 5-83 583-661 (680)
106 PF09279 EF-hand_like: Phospho 96.7 0.0055 1.2E-07 35.6 4.8 64 16-80 1-70 (83)
107 KOG1955|consensus 96.5 0.0096 2.1E-07 45.5 6.3 76 6-83 222-297 (737)
108 KOG4065|consensus 96.5 0.032 6.9E-07 34.3 7.1 69 6-76 60-142 (144)
109 PLN02952 phosphoinositide phos 96.5 0.046 1E-06 43.3 9.8 89 64-156 13-110 (599)
110 KOG1955|consensus 96.3 0.01 2.2E-07 45.4 5.3 63 91-155 230-292 (737)
111 KOG0042|consensus 96.1 0.011 2.4E-07 45.9 4.8 65 92-156 593-657 (680)
112 PF08726 EFhand_Ca_insen: Ca2+ 96.1 0.0052 1.1E-07 34.4 2.1 58 89-154 3-67 (69)
113 PF05517 p25-alpha: p25-alpha 95.9 0.1 2.2E-06 34.1 7.9 66 18-83 2-73 (154)
114 PF09069 EF-hand_3: EF-hand; 95.9 0.17 3.6E-06 30.0 7.8 66 92-160 3-79 (90)
115 KOG4578|consensus 95.6 0.017 3.7E-07 41.9 3.7 65 93-159 334-401 (421)
116 KOG0998|consensus 95.6 0.027 5.9E-07 46.6 5.1 143 8-155 122-344 (847)
117 KOG3555|consensus 95.4 0.069 1.5E-06 39.1 6.1 108 16-133 212-322 (434)
118 KOG0035|consensus 95.4 0.055 1.2E-06 44.5 6.2 70 91-160 746-820 (890)
119 PF05517 p25-alpha: p25-alpha 95.4 0.11 2.3E-06 34.1 6.6 63 95-157 2-70 (154)
120 KOG2243|consensus 95.4 0.036 7.7E-07 47.7 5.1 58 97-155 4062-4119(5019)
121 KOG0169|consensus 95.1 0.37 8E-06 39.0 9.7 97 50-155 135-231 (746)
122 KOG3555|consensus 94.3 0.1 2.2E-06 38.3 4.6 64 89-156 247-310 (434)
123 KOG0998|consensus 94.3 0.069 1.5E-06 44.3 4.3 145 9-158 5-192 (847)
124 KOG4347|consensus 94.1 0.12 2.7E-06 40.9 5.0 104 5-114 494-612 (671)
125 PF05042 Caleosin: Caleosin re 93.4 0.4 8.6E-06 31.8 5.8 67 91-157 6-125 (174)
126 KOG1264|consensus 93.4 0.78 1.7E-05 37.9 8.3 147 7-157 135-294 (1267)
127 KOG4347|consensus 93.3 0.16 3.5E-06 40.2 4.4 58 91-149 554-611 (671)
128 KOG1707|consensus 93.1 0.21 4.5E-06 39.4 4.6 72 6-80 306-378 (625)
129 KOG3866|consensus 92.6 0.24 5.1E-06 36.0 4.1 61 96-156 248-324 (442)
130 KOG1029|consensus 92.5 0.32 7E-06 39.6 5.2 65 13-79 193-257 (1118)
131 PF08976 DUF1880: Domain of un 91.5 0.32 6.8E-06 30.0 3.2 32 125-156 4-35 (118)
132 cd07313 terB_like_2 tellurium 91.1 1.4 3E-05 26.5 5.9 83 29-117 13-97 (104)
133 PRK09430 djlA Dna-J like membr 91.1 3.7 8.1E-05 29.5 8.9 107 16-136 54-174 (267)
134 PLN02222 phosphoinositide phos 91.0 1.4 3.1E-05 35.2 7.2 66 90-157 23-91 (581)
135 PF07308 DUF1456: Protein of u 90.9 1.4 3.1E-05 24.5 5.3 47 109-155 14-60 (68)
136 PLN02952 phosphoinositide phos 90.9 4.9 0.00011 32.4 10.0 89 28-120 13-110 (599)
137 KOG2243|consensus 90.4 0.65 1.4E-05 40.7 5.1 59 20-79 4062-4120(5019)
138 PF12174 RST: RCD1-SRO-TAF4 (R 90.2 0.21 4.5E-06 28.1 1.5 49 106-157 6-54 (70)
139 PF09069 EF-hand_3: EF-hand; 90.1 2.6 5.6E-05 24.9 7.7 64 14-80 2-76 (90)
140 KOG4578|consensus 90.1 0.35 7.6E-06 35.4 3.0 64 53-120 335-398 (421)
141 PLN02228 Phosphoinositide phos 89.8 2.6 5.6E-05 33.7 7.7 67 89-157 21-93 (567)
142 PLN02230 phosphoinositide phos 89.8 2.5 5.4E-05 34.0 7.6 67 89-156 26-102 (598)
143 COG4103 Uncharacterized protei 88.1 5.2 0.00011 25.8 9.3 109 11-130 27-140 (148)
144 PF14513 DAG_kinase_N: Diacylg 87.4 0.81 1.8E-05 29.4 3.0 50 105-156 4-60 (138)
145 KOG3449|consensus 85.9 6 0.00013 24.2 6.2 57 17-78 3-59 (112)
146 KOG2871|consensus 85.8 1.5 3.3E-05 32.8 4.0 41 89-129 306-346 (449)
147 KOG2871|consensus 85.4 0.97 2.1E-05 33.7 2.9 65 14-78 308-373 (449)
148 PF05099 TerB: Tellurite resis 84.9 0.74 1.6E-05 29.3 2.0 89 28-122 36-129 (140)
149 PF03672 UPF0154: Uncharacteri 83.6 3.6 7.8E-05 22.6 3.9 32 29-60 29-60 (64)
150 KOG4070|consensus 83.6 4.6 9.9E-05 26.3 5.0 89 15-103 12-109 (180)
151 PF08414 NADPH_Ox: Respiratory 83.1 7.9 0.00017 23.3 6.6 63 49-121 28-93 (100)
152 KOG3866|consensus 82.7 15 0.00032 27.2 7.7 113 8-120 194-324 (442)
153 PF11116 DUF2624: Protein of u 81.9 8.1 0.00017 22.6 5.7 33 107-139 13-45 (85)
154 PF01325 Fe_dep_repress: Iron 81.8 3.7 7.9E-05 22.2 3.6 55 9-72 2-56 (60)
155 PRK00523 hypothetical protein; 81.3 4.7 0.0001 22.7 3.9 32 29-60 37-68 (72)
156 PF14513 DAG_kinase_N: Diacylg 81.3 12 0.00026 24.1 6.4 66 66-138 6-79 (138)
157 PLN02223 phosphoinositide phos 80.8 10 0.00022 30.2 6.9 68 89-157 13-93 (537)
158 PF08726 EFhand_Ca_insen: Ca2+ 79.8 2.8 6.1E-05 23.4 2.8 53 15-75 6-65 (69)
159 KOG2301|consensus 79.5 1.4 3E-05 39.3 2.2 72 8-80 1410-1485(1592)
160 PF09068 EF-hand_2: EF hand; 79.3 13 0.00029 23.5 7.2 29 93-121 98-126 (127)
161 PF08976 DUF1880: Domain of un 79.0 1.9 4.1E-05 26.7 2.1 32 48-79 4-35 (118)
162 PF13623 SurA_N_2: SurA N-term 79.0 15 0.00032 23.8 7.0 81 66-154 47-145 (145)
163 TIGR01848 PHA_reg_PhaR polyhyd 78.2 8 0.00017 23.6 4.5 49 99-147 10-68 (107)
164 TIGR01565 homeo_ZF_HD homeobox 78.1 8.7 0.00019 20.7 4.6 38 5-47 4-45 (58)
165 PF00046 Homeobox: Homeobox do 77.4 8.3 0.00018 20.1 6.6 47 5-58 3-49 (57)
166 KOG4301|consensus 77.2 8.3 0.00018 28.7 5.2 97 56-158 115-217 (434)
167 PF07308 DUF1456: Protein of u 76.9 11 0.00023 21.1 5.3 48 32-79 14-61 (68)
168 PF08414 NADPH_Ox: Respiratory 76.4 7.6 0.00016 23.4 4.0 62 14-80 29-93 (100)
169 PF03672 UPF0154: Uncharacteri 76.4 7.9 0.00017 21.3 3.8 33 105-137 28-60 (64)
170 KOG4403|consensus 75.9 8.4 0.00018 29.6 5.0 57 63-120 40-96 (575)
171 PF07879 PHB_acc_N: PHB/PHA ac 75.8 5.8 0.00013 21.7 3.2 38 99-136 10-57 (64)
172 PRK01844 hypothetical protein; 75.7 8.5 0.00019 21.7 3.9 32 29-60 36-67 (72)
173 cd07313 terB_like_2 tellurium 75.2 4.4 9.6E-05 24.2 3.0 51 106-156 13-65 (104)
174 KOG3449|consensus 74.4 15 0.00031 22.6 4.9 44 95-138 4-47 (112)
175 cd00086 homeodomain Homeodomai 74.4 10 0.00022 19.7 6.5 47 5-58 3-49 (59)
176 KOG0039|consensus 73.9 9.5 0.00021 31.2 5.3 82 65-158 2-91 (646)
177 PLN02228 Phosphoinositide phos 73.0 29 0.00062 28.0 7.5 68 48-120 21-92 (567)
178 PRK00523 hypothetical protein; 72.5 11 0.00023 21.3 3.7 42 95-137 27-68 (72)
179 COG3763 Uncharacterized protei 71.6 14 0.00031 20.7 4.0 32 29-60 36-67 (71)
180 COG3763 Uncharacterized protei 70.7 13 0.00028 20.8 3.8 33 105-137 35-67 (71)
181 PTZ00373 60S Acidic ribosomal 70.2 20 0.00044 22.1 5.0 43 96-138 7-49 (112)
182 PLN02222 phosphoinositide phos 69.9 27 0.00059 28.3 6.8 62 16-79 26-90 (581)
183 TIGR01639 P_fal_TIGR01639 Plas 68.2 14 0.00029 20.1 3.6 31 107-137 8-38 (61)
184 KOG3077|consensus 67.2 37 0.0008 24.4 6.4 66 91-156 63-129 (260)
185 cd07176 terB tellurite resista 66.8 15 0.00033 22.0 4.1 79 29-114 16-99 (111)
186 PTZ00373 60S Acidic ribosomal 66.1 29 0.00063 21.5 6.2 53 18-75 6-58 (112)
187 PF12987 DUF3871: Domain of un 65.9 46 0.001 24.4 6.7 65 93-157 193-286 (323)
188 PRK01844 hypothetical protein; 65.9 17 0.00037 20.5 3.7 33 105-137 35-67 (72)
189 PF09336 Vps4_C: Vps4 C termin 63.9 12 0.00027 20.3 2.9 27 108-134 29-55 (62)
190 COG5069 SAC6 Ca2+-binding acti 63.8 14 0.0003 29.0 4.0 89 7-103 477-565 (612)
191 PF00404 Dockerin_1: Dockerin 63.8 9.9 0.00021 15.8 1.9 12 103-114 2-13 (21)
192 PF12174 RST: RCD1-SRO-TAF4 (R 63.7 22 0.00047 19.9 3.9 50 31-83 8-57 (70)
193 cd05833 Ribosomal_P2 Ribosomal 63.6 32 0.0007 21.2 5.0 43 96-138 5-47 (109)
194 TIGR03573 WbuX N-acetyl sugar 63.6 21 0.00046 26.7 5.0 43 106-154 300-342 (343)
195 PF01885 PTS_2-RNA: RNA 2'-pho 63.1 16 0.00036 24.7 4.0 37 102-138 26-62 (186)
196 COG4103 Uncharacterized protei 62.9 18 0.00038 23.4 3.8 60 95-157 33-95 (148)
197 KOG1265|consensus 62.8 1E+02 0.0022 26.6 9.8 81 37-120 210-299 (1189)
198 PF02761 Cbl_N2: CBL proto-onc 62.1 30 0.00065 20.3 6.4 51 66-121 21-71 (85)
199 TIGR00624 tag DNA-3-methyladen 61.5 16 0.00035 24.6 3.7 108 14-123 52-168 (179)
200 PF12486 DUF3702: ImpA domain 61.5 36 0.00077 22.2 5.1 34 10-43 64-97 (148)
201 PF13551 HTH_29: Winged helix- 61.3 32 0.0007 20.4 6.7 51 9-59 58-110 (112)
202 PLN02230 phosphoinositide phos 61.2 62 0.0013 26.4 7.3 64 15-79 29-102 (598)
203 PF06569 DUF1128: Protein of u 60.9 19 0.00042 20.2 3.3 37 7-45 31-67 (71)
204 cd07316 terB_like_DjlA N-termi 60.8 33 0.00071 20.4 7.1 81 29-115 13-96 (106)
205 PF08461 HTH_12: Ribonuclease 60.4 15 0.00033 20.2 2.9 37 105-141 10-46 (66)
206 PF03979 Sigma70_r1_1: Sigma-7 60.3 10 0.00022 21.8 2.3 43 92-138 7-49 (82)
207 PF11116 DUF2624: Protein of u 60.1 33 0.00071 20.1 7.3 51 30-80 13-63 (85)
208 PRK00819 RNA 2'-phosphotransfe 59.4 29 0.00063 23.4 4.6 37 102-138 27-63 (179)
209 KOG4004|consensus 58.7 5 0.00011 27.4 0.9 50 104-155 200-249 (259)
210 PRK14074 rpsF 30S ribosomal pr 57.3 28 0.00061 24.6 4.3 71 6-79 11-81 (257)
211 KOG4004|consensus 57.2 4.1 8.9E-05 27.9 0.3 59 21-81 193-252 (259)
212 KOG4286|consensus 57.0 1.1E+02 0.0024 25.9 8.0 97 53-158 472-582 (966)
213 KOG1954|consensus 55.3 20 0.00043 27.5 3.6 56 93-151 445-500 (532)
214 COG1460 Uncharacterized protei 55.1 21 0.00045 22.2 3.1 30 109-138 80-109 (114)
215 PF07499 RuvA_C: RuvA, C-termi 54.8 28 0.0006 17.6 3.8 39 111-153 3-41 (47)
216 PHA02105 hypothetical protein 54.4 33 0.00072 18.4 3.8 52 108-159 4-60 (68)
217 PLN00138 large subunit ribosom 54.1 51 0.0011 20.5 4.9 42 97-138 6-47 (113)
218 cd05833 Ribosomal_P2 Ribosomal 54.1 50 0.0011 20.3 5.2 57 19-80 5-61 (109)
219 smart00513 SAP Putative DNA-bi 53.3 24 0.00051 16.5 2.6 19 108-126 3-21 (35)
220 KOG0843|consensus 53.1 51 0.0011 22.3 4.8 45 6-57 106-150 (197)
221 PF09107 SelB-wing_3: Elongati 53.1 28 0.0006 18.0 3.0 32 105-141 7-38 (50)
222 PF12419 DUF3670: SNF2 Helicas 52.3 32 0.0007 22.1 3.9 49 105-153 80-138 (141)
223 PF02037 SAP: SAP domain; Int 52.0 20 0.00044 16.8 2.2 19 108-126 3-21 (35)
224 COG2036 HHT1 Histones H3 and H 51.9 49 0.0011 19.6 5.7 32 93-124 56-87 (91)
225 PF01023 S_100: S-100/ICaBP ty 51.8 31 0.00067 17.3 4.2 30 14-43 5-36 (44)
226 PRK14981 DNA-directed RNA poly 51.3 34 0.00074 21.1 3.7 27 110-136 80-106 (112)
227 PF07862 Nif11: Nitrogen fixat 49.7 31 0.00067 17.5 2.9 21 110-130 28-48 (49)
228 PF10437 Lip_prot_lig_C: Bacte 49.0 32 0.0007 19.8 3.2 43 33-77 43-86 (86)
229 PF04558 tRNA_synt_1c_R1: Glut 49.0 43 0.00093 22.3 4.1 48 89-137 82-129 (164)
230 KOG0506|consensus 48.7 43 0.00094 26.4 4.5 60 20-79 91-158 (622)
231 PF13331 DUF4093: Domain of un 48.5 39 0.00085 19.8 3.5 28 105-134 59-86 (87)
232 PRK08181 transposase; Validate 47.8 69 0.0015 23.2 5.3 49 29-80 4-52 (269)
233 PF04963 Sigma54_CBD: Sigma-54 47.5 55 0.0012 22.3 4.6 90 26-121 45-143 (194)
234 cd03035 ArsC_Yffb Arsenate Red 47.3 18 0.00039 21.9 2.0 51 107-160 34-87 (105)
235 COG4359 Uncharacterized conser 47.2 92 0.002 21.4 7.0 78 63-157 9-88 (220)
236 PLN00138 large subunit ribosom 47.2 68 0.0015 19.9 5.1 52 19-75 5-56 (113)
237 KOG1785|consensus 47.1 1.3E+02 0.0029 23.2 7.3 83 30-120 189-274 (563)
238 PF12631 GTPase_Cys_C: Catalyt 46.6 49 0.0011 18.5 3.6 47 92-138 23-73 (73)
239 TIGR02787 codY_Gpos GTP-sensin 46.4 72 0.0016 22.8 5.0 48 7-60 175-222 (251)
240 KOG2301|consensus 46.4 22 0.00047 32.4 3.0 70 86-156 1411-1484(1592)
241 PF06648 DUF1160: Protein of u 45.1 78 0.0017 20.0 5.5 45 89-136 34-79 (122)
242 KOG3077|consensus 45.0 1.2E+02 0.0025 22.0 10.7 108 15-122 64-187 (260)
243 PRK09430 djlA Dna-J like membr 44.8 69 0.0015 23.1 4.9 50 105-156 68-120 (267)
244 PF02337 Gag_p10: Retroviral G 44.2 45 0.00098 19.7 3.3 39 114-152 14-57 (90)
245 PF07128 DUF1380: Protein of u 44.1 41 0.00089 21.7 3.3 31 109-139 27-57 (139)
246 PF13592 HTH_33: Winged helix- 44.1 51 0.0011 17.5 3.7 32 107-138 3-35 (60)
247 TIGR00135 gatC glutamyl-tRNA(G 44.1 48 0.001 19.5 3.5 28 109-136 1-28 (93)
248 PF01885 PTS_2-RNA: RNA 2'-pho 44.0 57 0.0012 22.2 4.2 37 25-61 26-62 (186)
249 KOG2557|consensus 43.8 88 0.0019 23.9 5.3 51 65-120 72-122 (427)
250 KOG0493|consensus 42.9 81 0.0018 22.8 4.8 46 6-58 250-295 (342)
251 COG1321 TroR Mn-dependent tran 41.9 73 0.0016 20.9 4.3 116 8-138 3-121 (154)
252 cd02977 ArsC_family Arsenate R 41.9 76 0.0016 18.9 5.0 55 106-161 33-90 (105)
253 cd04411 Ribosomal_P1_P2_L12p R 41.8 81 0.0018 19.2 5.3 29 109-137 17-45 (105)
254 PRK10353 3-methyl-adenine DNA 41.5 41 0.00088 22.9 3.2 109 14-123 53-171 (187)
255 PRK00034 gatC aspartyl/glutamy 41.5 57 0.0012 19.2 3.5 29 108-136 2-30 (95)
256 TIGR03798 ocin_TIGR03798 bacte 41.5 59 0.0013 17.6 3.3 25 109-133 25-49 (64)
257 KOG0506|consensus 40.6 1E+02 0.0022 24.5 5.4 62 95-156 89-158 (622)
258 COG2818 Tag 3-methyladenine DN 40.3 23 0.0005 24.0 1.8 34 90-123 53-86 (188)
259 PF13720 Acetyltransf_11: Udp 39.7 76 0.0017 18.3 4.5 51 5-60 24-74 (83)
260 COG2818 Tag 3-methyladenine DN 39.6 38 0.00082 23.0 2.7 43 13-55 53-95 (188)
261 PF06384 ICAT: Beta-catenin-in 39.5 47 0.001 19.1 2.7 22 113-134 21-42 (78)
262 cd07894 Adenylation_RNA_ligase 39.4 78 0.0017 23.8 4.6 97 20-121 127-239 (342)
263 smart00389 HOX Homeodomain. DN 39.4 55 0.0012 16.6 6.2 46 6-58 4-49 (56)
264 PF09373 PMBR: Pseudomurein-bi 38.9 40 0.00088 15.6 2.1 15 106-120 2-16 (33)
265 cd08316 Death_FAS_TNFRSF6 Deat 38.8 88 0.0019 18.8 7.6 77 31-135 17-93 (97)
266 PRK10026 arsenate reductase; P 38.7 1.1E+02 0.0023 19.9 4.6 52 107-160 37-91 (141)
267 COG4807 Uncharacterized protei 38.6 1.1E+02 0.0023 19.7 7.2 96 35-139 19-129 (155)
268 PF07492 Trehalase_Ca-bi: Neut 38.2 10 0.00022 17.4 -0.1 18 131-148 2-19 (30)
269 PF08672 APC2: Anaphase promot 38.1 68 0.0015 17.3 4.2 31 89-120 12-44 (60)
270 cd07177 terB_like tellurium re 37.8 83 0.0018 18.2 4.6 78 29-115 13-95 (104)
271 KOG4301|consensus 37.7 1E+02 0.0023 23.3 4.9 75 7-82 100-176 (434)
272 PRK00819 RNA 2'-phosphotransfe 37.2 96 0.0021 21.0 4.4 43 26-71 28-70 (179)
273 KOG0869|consensus 36.2 1.3E+02 0.0028 19.9 7.3 83 28-136 29-114 (168)
274 PF02761 Cbl_N2: CBL proto-onc 36.0 93 0.002 18.2 5.8 51 105-155 19-69 (85)
275 cd08814 DED_Caspase_10_repeat2 35.5 90 0.002 18.0 4.8 63 36-101 3-66 (79)
276 PF09312 SurA_N: SurA N-termin 35.3 76 0.0016 19.5 3.5 15 28-42 9-23 (118)
277 PF12244 DUF3606: Protein of u 34.8 76 0.0016 16.9 3.6 27 111-139 20-46 (57)
278 PF09494 Slx4: Slx4 endonuclea 34.5 81 0.0018 17.1 3.8 28 109-136 25-56 (64)
279 PRK06402 rpl12p 50S ribosomal 34.5 1.1E+02 0.0024 18.7 5.2 30 108-137 16-45 (106)
280 PF02209 VHP: Villin headpiece 34.1 58 0.0012 15.6 2.2 19 109-132 2-20 (36)
281 KOG1954|consensus 33.7 92 0.002 24.1 4.2 56 18-76 447-502 (532)
282 PF01316 Arg_repressor: Argini 33.6 91 0.002 17.4 3.6 32 107-138 18-49 (70)
283 PF11848 DUF3368: Domain of un 33.4 72 0.0016 16.2 3.9 32 106-137 15-47 (48)
284 PLN02859 glutamine-tRNA ligase 33.3 3.1E+02 0.0067 23.5 8.0 48 89-137 84-131 (788)
285 cd08330 CARD_ASC_NALP1 Caspase 33.0 1E+02 0.0022 17.7 3.7 48 105-157 26-73 (82)
286 PF11363 DUF3164: Protein of u 32.7 1.7E+02 0.0036 20.2 6.3 57 37-101 105-161 (195)
287 TIGR01209 RNA ligase, Pab1020 32.3 1.5E+02 0.0032 22.8 5.1 102 22-129 164-280 (374)
288 smart00153 VHP Villin headpiec 32.3 66 0.0014 15.4 2.4 19 109-132 2-20 (36)
289 PF09682 Holin_LLH: Phage holi 32.1 1E+02 0.0022 18.7 3.7 33 105-137 64-100 (108)
290 PF08730 Rad33: Rad33; InterP 31.6 1.6E+02 0.0035 19.7 12.5 111 7-122 6-165 (170)
291 cd08819 CARD_MDA5_2 Caspase ac 31.6 1.2E+02 0.0025 18.0 5.6 49 29-80 31-79 (88)
292 PLN02223 phosphoinositide phos 31.4 2.9E+02 0.0062 22.5 7.3 24 17-41 18-41 (537)
293 TIGR02675 tape_meas_nterm tape 31.4 81 0.0018 17.8 2.9 16 105-120 27-42 (75)
294 KOG0148|consensus 31.4 6.3 0.00014 28.3 -1.9 31 93-123 58-88 (321)
295 TIGR03849 arch_ComA phosphosul 30.4 2E+02 0.0044 20.5 5.7 50 29-78 168-224 (237)
296 PF08349 DUF1722: Protein of u 29.9 1.4E+02 0.003 18.4 5.0 41 114-154 55-95 (117)
297 PF03250 Tropomodulin: Tropomo 29.8 1.6E+02 0.0036 19.2 4.5 22 7-28 22-43 (147)
298 PF05872 DUF853: Bacterial pro 29.8 96 0.0021 24.6 3.8 41 4-44 117-157 (502)
299 KOG2525|consensus 29.7 68 0.0015 25.4 3.0 67 69-145 20-86 (496)
300 PRK07571 bidirectional hydroge 29.7 1.8E+02 0.0038 19.5 5.7 43 5-47 12-67 (169)
301 TIGR02933 nifM_nitrog nitrogen 29.6 2.1E+02 0.0046 20.4 8.9 67 6-78 16-83 (256)
302 KOG4403|consensus 29.4 2.8E+02 0.0062 21.8 8.2 100 28-135 41-146 (575)
303 PF13624 SurA_N_3: SurA N-term 29.4 1.6E+02 0.0034 18.8 5.9 47 109-155 84-131 (154)
304 PRK00441 argR arginine repress 28.7 1.7E+02 0.0037 19.1 4.4 34 105-138 15-48 (149)
305 PHA02943 hypothetical protein; 28.6 1.8E+02 0.0039 19.3 8.9 94 6-120 2-106 (165)
306 PF10281 Ish1: Putative stress 28.6 77 0.0017 15.1 3.7 16 110-125 5-20 (38)
307 PRK12461 UDP-N-acetylglucosami 28.5 2.2E+02 0.0049 20.3 5.9 52 5-61 196-247 (255)
308 PRK09462 fur ferric uptake reg 28.4 1.7E+02 0.0036 18.8 4.8 50 8-61 14-63 (148)
309 PHA02773 hypothetical protein; 28.3 75 0.0016 18.8 2.4 30 4-33 16-45 (112)
310 TIGR02613 mob_myst_B mobile my 28.1 1E+02 0.0023 20.8 3.5 20 27-46 127-146 (186)
311 PF14069 SpoVIF: Stage VI spor 28.0 1.3E+02 0.0028 17.4 5.1 34 121-155 44-77 (79)
312 PF09851 SHOCT: Short C-termin 27.9 72 0.0016 14.5 3.9 14 29-42 14-27 (31)
313 PF13075 DUF3939: Protein of u 27.8 39 0.00084 21.7 1.3 19 140-158 37-55 (140)
314 TIGR02522 pilus_cpaD pilus (Ca 27.6 2E+02 0.0042 19.9 4.7 68 6-75 52-132 (198)
315 cd07311 terB_like_1 tellurium 27.0 1.9E+02 0.004 18.9 10.6 110 11-136 20-133 (150)
316 PF04876 Tenui_NCP: Tenuivirus 27.0 1.9E+02 0.0041 19.0 7.4 19 64-82 96-114 (175)
317 TIGR03573 WbuX N-acetyl sugar 26.9 2.1E+02 0.0045 21.5 5.2 11 50-60 305-315 (343)
318 TIGR02574 stabl_TIGR02574 puta 26.7 1.2E+02 0.0025 16.4 4.4 9 18-26 13-21 (63)
319 cd08813 DED_Caspase_8_repeat2 26.3 1.4E+02 0.0031 17.3 4.8 67 36-102 3-71 (83)
320 PF13608 Potyvirid-P3: Protein 26.2 1E+02 0.0022 24.2 3.5 33 12-45 286-318 (445)
321 PF03960 ArsC: ArsC family; I 26.0 46 0.001 20.1 1.4 54 107-160 31-86 (110)
322 COG0721 GatC Asp-tRNAAsn/Glu-t 25.9 1.4E+02 0.0029 17.9 3.3 29 108-136 2-30 (96)
323 PF06207 DUF1002: Protein of u 25.9 1.3E+02 0.0028 21.3 3.6 47 110-156 173-223 (225)
324 cd03034 ArsC_ArsC Arsenate Red 25.9 1.6E+02 0.0035 17.9 4.9 49 106-160 33-88 (112)
325 COG1859 KptA RNA:NAD 2'-phosph 25.8 1.7E+02 0.0036 20.5 4.1 38 102-139 53-90 (211)
326 PF07261 DnaB_2: Replication i 25.5 75 0.0016 17.5 2.1 42 98-139 2-44 (77)
327 TIGR02878 spore_ypjB sporulati 25.5 2.3E+02 0.0049 20.2 4.7 54 6-64 142-195 (233)
328 PF03874 RNA_pol_Rpb4: RNA pol 25.4 83 0.0018 19.2 2.5 11 50-60 56-66 (117)
329 PF08671 SinI: Anti-repressor 25.2 78 0.0017 14.5 1.7 12 109-120 17-28 (30)
330 PF12949 HeH: HeH/LEM domain; 25.1 54 0.0012 15.6 1.2 18 108-125 3-20 (35)
331 PRK13344 spxA transcriptional 25.0 1.9E+02 0.0041 18.3 4.8 52 107-160 35-89 (132)
332 PRK15121 right oriC-binding tr 24.9 2.7E+02 0.0059 20.1 8.5 56 15-80 5-60 (289)
333 PF04695 Pex14_N: Peroxisomal 24.9 1.9E+02 0.0042 18.4 6.0 48 92-141 4-51 (136)
334 cd03033 ArsC_15kD Arsenate Red 24.8 1E+02 0.0022 18.9 2.8 50 107-160 35-87 (113)
335 KOG4286|consensus 24.6 3E+02 0.0065 23.5 5.8 100 17-119 472-579 (966)
336 TIGR00014 arsC arsenate reduct 24.3 1.8E+02 0.0039 17.8 5.1 55 106-161 33-90 (114)
337 PF12238 MSA-2c: Merozoite sur 24.3 2.3E+02 0.0049 19.8 4.5 34 89-122 81-115 (205)
338 TIGR01529 argR_whole arginine 24.2 2E+02 0.0042 18.7 4.1 35 105-139 13-47 (146)
339 PRK10356 hypothetical protein; 24.2 2.7E+02 0.0059 20.4 5.1 45 6-50 108-152 (274)
340 cd05831 Ribosomal_P1 Ribosomal 24.1 1.8E+02 0.0038 17.7 4.1 39 97-137 8-46 (103)
341 PF09550 DUF2376: Conserved hy 23.8 1.1E+02 0.0024 15.3 3.4 16 143-158 27-42 (43)
342 COG2058 RPP1A Ribosomal protei 23.7 1.9E+02 0.0041 17.8 5.6 31 108-138 16-46 (109)
343 COG5562 Phage envelope protein 23.2 63 0.0014 20.7 1.6 18 62-79 83-100 (137)
344 PF06163 DUF977: Bacterial pro 23.2 2.1E+02 0.0046 18.2 4.8 48 6-59 2-49 (127)
345 KOG0871|consensus 23.1 2.3E+02 0.005 18.6 4.0 28 97-124 55-82 (156)
346 PF12812 PDZ_1: PDZ-like domai 23.1 97 0.0021 17.7 2.3 21 140-160 58-78 (78)
347 cd00076 H4 Histone H4, one of 22.9 1.7E+02 0.0037 17.1 7.8 32 93-124 50-81 (85)
348 PF08812 YtxC: YtxC-like famil 22.8 45 0.00098 23.3 1.0 68 69-137 117-190 (221)
349 PF11829 DUF3349: Protein of u 22.8 1.9E+02 0.004 17.4 4.4 65 68-137 20-85 (96)
350 cd03032 ArsC_Spx Arsenate Redu 22.7 1.9E+02 0.0042 17.6 4.8 52 107-160 35-89 (115)
351 smart00874 B5 tRNA synthetase 22.4 1.5E+02 0.0032 16.1 3.6 16 122-137 16-31 (71)
352 PF06207 DUF1002: Protein of u 22.4 1.8E+02 0.0038 20.6 3.8 46 33-78 173-222 (225)
353 cd08327 CARD_RAIDD Caspase act 22.3 1.9E+02 0.004 17.3 4.6 47 28-79 32-78 (94)
354 PRK10945 gene expression modul 22.3 1.6E+02 0.0035 16.6 3.3 12 108-119 34-45 (72)
355 cd08324 CARD_NOD1_CARD4 Caspas 22.0 1.8E+02 0.0039 17.0 3.9 48 105-157 26-73 (85)
356 COG1059 Thermostable 8-oxoguan 21.8 1.9E+02 0.0041 19.9 3.7 22 104-125 66-87 (210)
357 smart00540 LEM in nuclear memb 21.8 1.3E+02 0.0027 15.2 2.2 18 31-48 5-22 (44)
358 KOG1070|consensus 21.7 5.9E+02 0.013 23.8 7.2 48 91-138 1513-1561(1710)
359 TIGR01446 DnaD_dom DnaD and ph 21.7 1.1E+02 0.0025 16.7 2.4 29 108-138 12-43 (73)
360 PLN00035 histone H4; Provision 21.5 2.1E+02 0.0045 17.5 7.0 32 93-124 66-97 (103)
361 PF03352 Adenine_glyco: Methyl 21.2 51 0.0011 22.3 1.0 44 14-57 48-91 (179)
362 PRK12821 aspartyl/glutamyl-tRN 21.1 2.5E+02 0.0054 22.2 4.6 53 8-60 357-417 (477)
363 PTZ00015 histone H4; Provision 20.9 2.1E+02 0.0046 17.4 8.0 32 93-124 67-98 (102)
364 PRK09389 (R)-citramalate synth 20.9 2.6E+02 0.0057 22.3 4.9 47 35-81 321-369 (488)
365 KOG2419|consensus 20.8 1.8E+02 0.0038 24.3 3.9 80 35-119 421-532 (975)
366 cd07909 YciF YciF bacterial st 20.8 1E+02 0.0022 20.1 2.3 23 9-31 44-66 (147)
367 PF01988 VIT1: VIT family; In 20.4 2.1E+02 0.0046 19.7 3.9 32 109-142 80-111 (213)
368 COG1508 RpoN DNA-directed RNA 20.4 4.4E+02 0.0096 20.9 11.5 50 27-78 121-173 (444)
369 PF05872 DUF853: Bacterial pro 20.4 1.5E+02 0.0032 23.6 3.3 34 89-122 125-158 (502)
370 smart00657 RPOL4c DNA-directed 20.3 1.8E+02 0.0038 18.0 3.2 30 108-137 82-111 (118)
371 TIGR03685 L21P_arch 50S riboso 20.3 2.2E+02 0.0048 17.4 5.3 31 108-138 16-46 (105)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=100.00 E-value=3.4e-33 Score=179.40 Aligned_cols=150 Identities=27% Similarity=0.485 Sum_probs=142.4
Q ss_pred cccCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcC
Q psy164 5 EEVHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISEN 84 (161)
Q Consensus 5 ~~~~l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~ 84 (161)
...+++++++++++++|..+|++++|.|+..+|..+++.+|..++.+++.+++..++. +.+.|+|.+|+.++......
T Consensus 10 ~~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~- 87 (160)
T COG5126 10 TFTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKR- 87 (160)
T ss_pred hcccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhcc-
Confidence 4578999999999999999999999999999999999999999999999999999997 88999999999999998765
Q ss_pred CCCCCcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhccCCCCCceeHHHHHHHHhcccc
Q psy164 85 RFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIMKSEE 159 (161)
Q Consensus 85 ~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~ 159 (161)
....++++.+|+.||++++|+|+..+|+.+++.+|..++++++..+++.++.+++|.|+|++|++.+...+.
T Consensus 88 ---~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~~~~ 159 (160)
T COG5126 88 ---GDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKDSPT 159 (160)
T ss_pred ---CCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhccCC
Confidence 377899999999999999999999999999999999999999999999999999999999999999887653
No 2
>KOG0027|consensus
Probab=99.97 E-value=8.7e-30 Score=166.17 Aligned_cols=150 Identities=29% Similarity=0.528 Sum_probs=137.3
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCCCC
Q psy164 8 HITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQ 87 (161)
Q Consensus 8 ~l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~ 87 (161)
.++..+..+++.+|..+|.+++|+|+..+|..+++.+|..++..++..++..+|.+++|.|++.+|+.++..........
T Consensus 1 ~~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~ 80 (151)
T KOG0027|consen 1 ELSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDE 80 (151)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccc
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999876542110
Q ss_pred CCcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhccCCCCCceeHHHHHHHHhcc
Q psy164 88 PASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIMKS 157 (161)
Q Consensus 88 ~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 157 (161)
.....+++.+|+.||.+++|+||.+||+++|..+|.+.+.+++..+++.+|.|++|.|+|.+|++.|...
T Consensus 81 ~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~~ 150 (151)
T KOG0027|consen 81 EASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSGK 150 (151)
T ss_pred cccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhcC
Confidence 0235699999999999999999999999999999999999999999999999999999999999998753
No 3
>KOG0028|consensus
Probab=99.97 E-value=1.8e-28 Score=154.51 Aligned_cols=151 Identities=28% Similarity=0.460 Sum_probs=143.2
Q ss_pred cccccCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhh
Q psy164 3 LSEEVHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMIS 82 (161)
Q Consensus 3 ~~~~~~l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~ 82 (161)
.++...+++++.++++.+|..||.+++|+|+.++|+-+++.+|+.+..+++.+++..++.++.|.|+|++|...+.....
T Consensus 21 ~~~~~~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~ 100 (172)
T KOG0028|consen 21 ASPKSELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLG 100 (172)
T ss_pred CCCCccccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHh
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred cCCCCCCcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhccCCCCCceeHHHHHHHHhcc
Q psy164 83 ENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIMKS 157 (161)
Q Consensus 83 ~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 157 (161)
.+ .+.++++.+|+.+|.+++|.|++.+|+.+.+.+|++++++++.+|+..+|.+++|.|+-++|.+.|++.
T Consensus 101 e~----dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~t 171 (172)
T KOG0028|consen 101 ER----DTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKKT 171 (172)
T ss_pred cc----CcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhcC
Confidence 64 789999999999999999999999999999999999999999999999999999999999999998764
No 4
>PTZ00183 centrin; Provisional
Probab=99.95 E-value=4.2e-26 Score=149.92 Aligned_cols=152 Identities=34% Similarity=0.531 Sum_probs=140.0
Q ss_pred ccccCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhc
Q psy164 4 SEEVHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISE 83 (161)
Q Consensus 4 ~~~~~l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~ 83 (161)
+.+.++++.+.++++.+|..+|.+++|.|+..+|..+++.+|..++...+..++..++.+++|.|+|.+|+..+......
T Consensus 6 ~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~ 85 (158)
T PTZ00183 6 SERPGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGE 85 (158)
T ss_pred cccCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcC
Confidence 45678999999999999999999999999999999999999998889999999999999999999999999988765432
Q ss_pred CCCCCCcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhccCCCCCceeHHHHHHHHhcccc
Q psy164 84 NRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIMKSEE 159 (161)
Q Consensus 84 ~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~ 159 (161)
......++.+|+.+|.+++|.|+..||..++..+|..++..++..++..+|.+++|.|+|++|..++.+.|.
T Consensus 86 ----~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 157 (158)
T PTZ00183 86 ----RDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKKTNL 157 (158)
T ss_pred ----CCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhcccC
Confidence 245678999999999999999999999999999999999999999999999999999999999999998774
No 5
>KOG0030|consensus
Probab=99.94 E-value=1.6e-25 Score=138.07 Aligned_cols=146 Identities=28% Similarity=0.528 Sum_probs=133.3
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCC--CCccchhhHHHHHHHhhhcCC
Q psy164 8 HITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPE--FGNIALSRFLPIVSGMISENR 85 (161)
Q Consensus 8 ~l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~--~~~i~~~ef~~~~~~~~~~~~ 85 (161)
..++++..+++++|..||..++|+|+..+...+|+.+|.+|++.++.+.+..+..+. -.+++|++|+.++......+.
T Consensus 4 ~~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~ 83 (152)
T KOG0030|consen 4 AFTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKD 83 (152)
T ss_pred ccCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccc
Confidence 467888899999999999999999999999999999999999999999999887763 478999999999998876543
Q ss_pred CCCCcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhccCCCCCceeHHHHHHHHhc
Q psy164 86 FQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIMK 156 (161)
Q Consensus 86 ~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 156 (161)
. ...+.+....+.||++++|.|.-.||+++|.++|+.++++++..+++.. .|.+|.|+|+.|++.+..
T Consensus 84 q--~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~-eD~nG~i~YE~fVk~i~~ 151 (152)
T KOG0030|consen 84 Q--GTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQ-EDSNGCINYEAFVKHIMS 151 (152)
T ss_pred c--CcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccc-cccCCcCcHHHHHHHHhc
Confidence 2 6678899999999999999999999999999999999999999999988 589999999999998764
No 6
>KOG0031|consensus
Probab=99.94 E-value=5.9e-25 Score=137.77 Aligned_cols=143 Identities=24% Similarity=0.476 Sum_probs=135.4
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCCCC
Q psy164 8 HITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQ 87 (161)
Q Consensus 8 ~l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~ 87 (161)
.+++.|+++++++|...|.+++|.|+..+|+.++.++|..++++++..++... +|-|+|.-|+.++...+..
T Consensus 25 mf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmfGekL~g---- 96 (171)
T KOG0031|consen 25 MFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMFGEKLNG---- 96 (171)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHHHHHhcC----
Confidence 58899999999999999999999999999999999999999999999998766 6899999999999998887
Q ss_pred CCcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhccCCCCCceeHHHHHHHHhccc
Q psy164 88 PASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIMKSE 158 (161)
Q Consensus 88 ~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~ 158 (161)
.++++.+..||+.||.+++|+|..+.|+.+|.+.|..+++++++.+++.+-.+..|.|+|..|+..+....
T Consensus 97 tdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ithG~ 167 (171)
T KOG0031|consen 97 TDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIITHGE 167 (171)
T ss_pred CCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHHccc
Confidence 48899999999999999999999999999999999999999999999999999999999999999998543
No 7
>PTZ00184 calmodulin; Provisional
Probab=99.94 E-value=6.2e-25 Score=142.92 Aligned_cols=146 Identities=33% Similarity=0.608 Sum_probs=134.0
Q ss_pred cCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCCC
Q psy164 7 VHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRF 86 (161)
Q Consensus 7 ~~l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~ 86 (161)
.++++++.+.++..|..+|.+++|.|+..+|..++..+|..++.+.+..++..++.+++|.|+|++|+.++......
T Consensus 3 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~--- 79 (149)
T PTZ00184 3 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKD--- 79 (149)
T ss_pred CccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccC---
Confidence 46889999999999999999999999999999999999998889999999999999999999999999988865432
Q ss_pred CCCcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhccCCCCCceeHHHHHHHHhc
Q psy164 87 QPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIMK 156 (161)
Q Consensus 87 ~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 156 (161)
......++.+|+.+|.+++|.|+.++|..++..+|..++.+++..++..+|.+++|.|+|.+|+.++..
T Consensus 80 -~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 80 -TDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred -CcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHhc
Confidence 144568899999999999999999999999999999999999999999999999999999999998864
No 8
>KOG0034|consensus
Probab=99.88 E-value=3.4e-21 Score=128.00 Aligned_cols=144 Identities=20% Similarity=0.343 Sum_probs=122.2
Q ss_pred CCHHHHHHHHHHHHhhCCC-CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCc-cchhhHHHHHHHhhhcCCC
Q psy164 9 ITNDFEKKIADAFDIFDHA-GNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGN-IALSRFLPIVSGMISENRF 86 (161)
Q Consensus 9 l~~~~~~~l~~~f~~~D~~-~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~-i~~~ef~~~~~~~~~~~~~ 86 (161)
++..++..|...|.++|.+ +.|+|+.++|..+. .+..+| -..+++..++..++|. |+|++|+..+......
T Consensus 27 fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~-~~~~Np---~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~--- 99 (187)
T KOG0034|consen 27 FSANEIERLYERFKKLDRNNGDGYLTKEEFLSIP-ELALNP---LADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPK--- 99 (187)
T ss_pred cCHHHHHHHHHHHHHhccccccCccCHHHHHHHH-HHhcCc---HHHHHHHHHhccCCCCccCHHHHHHHHhhhcCC---
Confidence 8999999999999999999 99999999999988 444444 3457888888877777 9999999999988766
Q ss_pred CCCcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHc-CCCCC--HHH----HHHHHhhccCCCCCceeHHHHHHHHhcccc
Q psy164 87 QPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEE-GEPFT--PEE----IDEMMSTAVDQDTGRIPYEYYINHIMKSEE 159 (161)
Q Consensus 87 ~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~-g~~~~--~~~----~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~ 159 (161)
....+.++-||++||.+++|+|+++|+.+++..+ |...+ ++. ++..+..+|.++||+|+++||.+++.+.|.
T Consensus 100 -~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~P~ 178 (187)
T KOG0034|consen 100 -ASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQPD 178 (187)
T ss_pred -ccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCcc
Confidence 2445699999999999999999999999999985 54555 554 455677899999999999999999999876
Q ss_pred C
Q psy164 160 R 160 (161)
Q Consensus 160 ~ 160 (161)
.
T Consensus 179 ~ 179 (187)
T KOG0034|consen 179 L 179 (187)
T ss_pred H
Confidence 4
No 9
>KOG0037|consensus
Probab=99.86 E-value=4.2e-20 Score=122.70 Aligned_cols=132 Identities=17% Similarity=0.232 Sum_probs=122.2
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCCCCCCcHH
Q psy164 14 EKKIADAFDIFDHAGNKTIDCREVGTVLRALGG-CPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQPASAE 92 (161)
Q Consensus 14 ~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~-~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 92 (161)
-..+...|...|++..|.|+.+|+..+|...+. +.+.+.++.|+..+|.+..|+|++.||..++..+ +
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i-----------~ 124 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI-----------N 124 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH-----------H
Confidence 347788999999999999999999999986654 6678899999999999999999999999999987 6
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhccCCCCCceeHHHHHHHHhc
Q psy164 93 ELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIMK 156 (161)
Q Consensus 93 ~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 156 (161)
.++.+|+.||.|++|.|+..||+++|..+|..++++-.+.+++++|..++|.|.+++|+.+...
T Consensus 125 ~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~ 188 (221)
T KOG0037|consen 125 QWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVV 188 (221)
T ss_pred HHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999888999999999998754
No 10
>KOG0036|consensus
Probab=99.83 E-value=4.4e-19 Score=127.45 Aligned_cols=143 Identities=15% Similarity=0.252 Sum_probs=133.4
Q ss_pred cCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCC-CCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCC
Q psy164 7 VHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGC-PTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENR 85 (161)
Q Consensus 7 ~~l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~-~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~ 85 (161)
....++...+++..|..+|.+++|.++..++.+.+..+..+ +..+-++.++..+|.+.+|.|+|++|...+.
T Consensus 6 ~~~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~------- 78 (463)
T KOG0036|consen 6 RETDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLD------- 78 (463)
T ss_pred cCCcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHH-------
Confidence 45677888899999999999999999999999999999876 7778889999999999999999999999888
Q ss_pred CCCCcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhccCCCCCceeHHHHHHHHhcccc
Q psy164 86 FQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIMKSEE 159 (161)
Q Consensus 86 ~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~ 159 (161)
..+.++..+|+..|.+++|.|+++|+.+.|+.+|.+++++++..+++.+|.++++.|+++||..++...|+
T Consensus 79 ---~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p~ 149 (463)
T KOG0036|consen 79 ---NKELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYPE 149 (463)
T ss_pred ---HhHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCCh
Confidence 55678999999999999999999999999999999999999999999999999999999999999987764
No 11
>KOG0044|consensus
Probab=99.82 E-value=5.3e-19 Score=117.65 Aligned_cols=146 Identities=17% Similarity=0.195 Sum_probs=118.3
Q ss_pred cCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCC-HHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCC
Q psy164 7 VHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPT-EADIQEIIVTCENPEFGNIALSRFLPIVSGMISENR 85 (161)
Q Consensus 7 ~~l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~-~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~ 85 (161)
+.+++.++..+.+-|..-. .+|.++.++|+.+++.+..... ..-+..++..+|.+++|.|+|.||+..+....+.
T Consensus 21 t~f~~~ei~~~Yr~Fk~~c--P~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rG-- 96 (193)
T KOG0044|consen 21 TKFSKKEIQQWYRGFKNEC--PSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRG-- 96 (193)
T ss_pred cCCCHHHHHHHHHHhcccC--CCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCC--
Confidence 3455555555555444422 3899999999999999875333 4567889999999999999999999999998877
Q ss_pred CCCCcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHc----CC-------CCCHHHHHHHHhhccCCCCCceeHHHHHHHH
Q psy164 86 FQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEE----GE-------PFTPEEIDEMMSTAVDQDTGRIPYEYYINHI 154 (161)
Q Consensus 86 ~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~----g~-------~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 154 (161)
...+.++.+|++||.+++|+|++.|+-.++..+ |. ....+.+..+++.+|.|+||.|++++|+...
T Consensus 97 ---t~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~ 173 (193)
T KOG0044|consen 97 ---TLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGC 173 (193)
T ss_pred ---cHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHh
Confidence 778899999999999999999999998888763 32 1234557889999999999999999999998
Q ss_pred hcccc
Q psy164 155 MKSEE 159 (161)
Q Consensus 155 ~~~~~ 159 (161)
...+.
T Consensus 174 ~~d~~ 178 (193)
T KOG0044|consen 174 KADPS 178 (193)
T ss_pred hhCHH
Confidence 77654
No 12
>PLN02964 phosphatidylserine decarboxylase
Probab=99.67 E-value=1.9e-15 Score=116.78 Aligned_cols=121 Identities=17% Similarity=0.353 Sum_probs=104.8
Q ss_pred cCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhC-CCCCHHH---HHHHHHHhCCCCCCccchhhHHHHHHHhhh
Q psy164 7 VHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALG-GCPTEAD---IQEIIVTCENPEFGNIALSRFLPIVSGMIS 82 (161)
Q Consensus 7 ~~l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~-~~~~~~~---~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~ 82 (161)
..++..|+++++++|..+|++++|.+ +..+++.+| ..+++.+ ++.++..+|.+++|.|+|.||+.++..+..
T Consensus 135 t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~ 210 (644)
T PLN02964 135 FDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGN 210 (644)
T ss_pred hhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhcc
Confidence 46788999999999999999999997 889999999 5888876 799999999999999999999999986532
Q ss_pred cCCCCCCcHHHHHHHHHhhCCCCCCcccHHHHHHHHHH-------------cCCCCCH-HHHHHHHhh
Q psy164 83 ENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIE-------------EGEPFTP-EEIDEMMST 136 (161)
Q Consensus 83 ~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~-------------~g~~~~~-~~~~~~~~~ 136 (161)
....++++.+|+.||++++|+|+.+||++++.. .|..++. ++++.|++.
T Consensus 211 -----~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~~~~~~~~~~cp~cg~~l~~~~~~~~iiH~ 273 (644)
T PLN02964 211 -----LVAANKKEELFKAADLNGDGVVTIDELAALLALQQEQEPIINNCPVCGEALGVSDKLNAMIHM 273 (644)
T ss_pred -----CCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcccCcchhhhchhhcCcccchhhHHHHHHH
Confidence 266788999999999999999999999999988 5666665 566666654
No 13
>KOG4223|consensus
Probab=99.58 E-value=1.9e-14 Score=101.11 Aligned_cols=141 Identities=16% Similarity=0.216 Sum_probs=114.8
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCCCCCCcH
Q psy164 13 FEKKIADAFDIFDHAGNKTIDCREVGTVLRALGG-CPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQPASA 91 (161)
Q Consensus 13 ~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~-~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~ 91 (161)
.+.+-++.|...|.+++|.++.+||..+|+.--. .+..-.++.-+...|++++|.|++.||+.-+........-+.+..
T Consensus 161 m~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~ 240 (325)
T KOG4223|consen 161 MIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVL 240 (325)
T ss_pred HHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCccccc
Confidence 3556678899999999999999999999975432 233445666778899999999999999988776654322233444
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhccCCCCCceeHHHHHHH
Q psy164 92 EELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINH 153 (161)
Q Consensus 92 ~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 153 (161)
.+-.+.+...|+|++|+++.+|+++++..-+......++..++...|.|+||++|++|.+..
T Consensus 241 ~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~~ 302 (325)
T KOG4223|consen 241 TEREQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILEH 302 (325)
T ss_pred ccHHHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhhC
Confidence 56667777889999999999999999988888888899999999999999999999998763
No 14
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.58 E-value=9e-15 Score=86.35 Aligned_cols=67 Identities=16% Similarity=0.236 Sum_probs=62.4
Q ss_pred HHHHHHHHHhhCC-CCCCcccHHHHHHHHHH-cCCCCCH-HHHHHHHhhccCCCCCceeHHHHHHHHhcc
Q psy164 91 AEELLKAFRTLDK-DNKSYLDKEYLTKLMIE-EGEPFTP-EEIDEMMSTAVDQDTGRIPYEYYINHIMKS 157 (161)
Q Consensus 91 ~~~~~~~f~~~D~-~~~g~I~~~el~~~l~~-~g~~~~~-~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 157 (161)
...++.+|+.||+ +++|+|+.+||+.++.. +|..+++ +++..+++.+|.|+||.|+|+||+.+|.+.
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 3578999999999 99999999999999999 9988888 999999999999999999999999998753
No 15
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.54 E-value=5e-14 Score=79.17 Aligned_cols=62 Identities=29% Similarity=0.567 Sum_probs=54.8
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHH----HHHHhhccCCCCCceeHHHHHHHH
Q psy164 93 ELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEI----DEMMSTAVDQDTGRIPYEYYINHI 154 (161)
Q Consensus 93 ~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~----~~~~~~~d~~~~g~i~~~eF~~~l 154 (161)
.++.+|+.+|.+++|+|+.+||+.++..++...++.++ ..+++.+|.+++|.|+++||++++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 36889999999999999999999999999977666554 445999999999999999999875
No 16
>KOG0377|consensus
Probab=99.54 E-value=1.4e-13 Score=100.32 Aligned_cols=140 Identities=11% Similarity=0.142 Sum_probs=108.8
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHH-hCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCCCCC-----
Q psy164 15 KKIADAFDIFDHAGNKTIDCREVGTVLRA-LGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQP----- 88 (161)
Q Consensus 15 ~~l~~~f~~~D~~~~g~i~~~el~~~l~~-l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~----- 88 (161)
.+|...|..+|.+++|+|+...+..++.. +|+.++...+..-+.. .+.+|.|.|.+....+..-...+....
T Consensus 464 sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~--~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvet 541 (631)
T KOG0377|consen 464 SDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLAN--GSDDGKVEYKSTLDNLDTEVILEEAGSSLVET 541 (631)
T ss_pred hHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccC--CCcCcceehHhHHHHhhhhhHHHHHHhHHHHH
Confidence 46788999999999999999999999976 5777777544433222 245789999988877654321110000
Q ss_pred --CcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcC----CCCCHHHHHHHHhhccCCCCCceeHHHHHHHHhc
Q psy164 89 --ASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEG----EPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIMK 156 (161)
Q Consensus 89 --~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g----~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 156 (161)
.....+..+|+.+|.|++|.|+.+||+++++-++ ..+++.++.++.+.+|.|+||+|++.||++.++-
T Consensus 542 LYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 542 LYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred HHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 1124577899999999999999999999998764 5688999999999999999999999999998763
No 17
>KOG0038|consensus
Probab=99.53 E-value=5.7e-13 Score=83.52 Aligned_cols=145 Identities=15% Similarity=0.217 Sum_probs=105.9
Q ss_pred CCHHHHHHHHHHHHhhCCCC-----------CCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHH
Q psy164 9 ITNDFEKKIADAFDIFDHAG-----------NKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIV 77 (161)
Q Consensus 9 l~~~~~~~l~~~f~~~D~~~-----------~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~ 77 (161)
++.+++-++...|+.+.++- .-+++.+.+.++ ..+.-+|- -+++...+..++.|+++|.+|+.++
T Consensus 22 FtrKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~kM-PELkenpf---k~ri~e~FSeDG~GnlsfddFlDmf 97 (189)
T KOG0038|consen 22 FTRKDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEKM-PELKENPF---KRRICEVFSEDGRGNLSFDDFLDMF 97 (189)
T ss_pred ccHHHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhhC-hhhhcChH---HHHHHHHhccCCCCcccHHHHHHHH
Confidence 34455556666666654321 112444444432 33333332 2467778888999999999999998
Q ss_pred HHhhhcCCCCCCcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHc-CCCCCHHHHHH----HHhhccCCCCCceeHHHHHH
Q psy164 78 SGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEE-GEPFTPEEIDE----MMSTAVDQDTGRIPYEYYIN 152 (161)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~-g~~~~~~~~~~----~~~~~d~~~~g~i~~~eF~~ 152 (161)
...... ....-.+..||++||-+++++|...+|.+.+.++ .-.++++++.. ++..+|.|+||++++.+|..
T Consensus 98 SV~sE~----APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~ 173 (189)
T KOG0038|consen 98 SVFSEM----APRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEH 173 (189)
T ss_pred HHHHhh----ChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHH
Confidence 877554 2445678899999999999999999999999986 34588888654 56778999999999999999
Q ss_pred HHhccccCC
Q psy164 153 HIMKSEERL 161 (161)
Q Consensus 153 ~l~~~~~~l 161 (161)
.+.+.|+.|
T Consensus 174 ~i~raPDFl 182 (189)
T KOG0038|consen 174 VILRAPDFL 182 (189)
T ss_pred HHHhCcchH
Confidence 999998864
No 18
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.48 E-value=3e-13 Score=79.96 Aligned_cols=67 Identities=18% Similarity=0.297 Sum_probs=61.7
Q ss_pred HHHHHHHHHhhC-CCCCC-cccHHHHHHHHHH-----cCCCCCHHHHHHHHhhccCCCCCceeHHHHHHHHhcc
Q psy164 91 AEELLKAFRTLD-KDNKS-YLDKEYLTKLMIE-----EGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIMKS 157 (161)
Q Consensus 91 ~~~~~~~f~~~D-~~~~g-~I~~~el~~~l~~-----~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 157 (161)
...++.+|+.|| .+++| +|+.+||+.+|.. +|...+++++..+++.+|.|++|.|+|.+|+.++...
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 357899999998 79999 5999999999999 8988999999999999999999999999999988753
No 19
>KOG0037|consensus
Probab=99.45 E-value=1.4e-12 Score=87.11 Aligned_cols=88 Identities=19% Similarity=0.265 Sum_probs=80.6
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCCCCCCcHHH
Q psy164 14 EKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQPASAEE 93 (161)
Q Consensus 14 ~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~ 93 (161)
+..++.+|..+|+|++|.|+.+||+.+|..+|+.++++-.+.++++++..++|.+.|.+|++++..+ ..
T Consensus 123 i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L-----------~~ 191 (221)
T KOG0037|consen 123 INQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL-----------QR 191 (221)
T ss_pred HHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHH-----------HH
Confidence 5677899999999999999999999999999999999999999999997769999999999999877 57
Q ss_pred HHHHHHhhCCCCCCcccHH
Q psy164 94 LLKAFRTLDKDNKSYLDKE 112 (161)
Q Consensus 94 ~~~~f~~~D~~~~g~I~~~ 112 (161)
+..+|+.+|.+..|.|+..
T Consensus 192 lt~~Fr~~D~~q~G~i~~~ 210 (221)
T KOG0037|consen 192 LTEAFRRRDTAQQGSITIS 210 (221)
T ss_pred HHHHHHHhccccceeEEEe
Confidence 7899999999999987653
No 20
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.43 E-value=1.3e-12 Score=77.18 Aligned_cols=71 Identities=10% Similarity=0.226 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHhhCC-CCCCcccHHHHHHHHHH-hCCCCCH-HHHHHHHHHhCCCCCCccchhhHHHHHHHhh
Q psy164 11 NDFEKKIADAFDIFDH-AGNKTIDCREVGTVLRA-LGGCPTE-ADIQEIIVTCENPEFGNIALSRFLPIVSGMI 81 (161)
Q Consensus 11 ~~~~~~l~~~f~~~D~-~~~g~i~~~el~~~l~~-l~~~~~~-~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~ 81 (161)
+.-+..+..+|..||. +++|+|+..||+.++.+ +|-.++. +++..++..+|.+++|.|+|.||+.++..+.
T Consensus 4 E~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 4 EKAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 3457789999999999 99999999999999998 8877777 8999999999999999999999999988753
No 21
>KOG0027|consensus
Probab=99.43 E-value=3.9e-12 Score=83.00 Aligned_cols=102 Identities=19% Similarity=0.243 Sum_probs=91.7
Q ss_pred HHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCCCCCCcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCC-----
Q psy164 51 ADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPF----- 125 (161)
Q Consensus 51 ~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~----- 125 (161)
.++..+|..+|.+++|.|+-.++-.++..+... ....++..+++.+|.+++|.|+..+|..++...+...
T Consensus 8 ~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~-----~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~ 82 (151)
T KOG0027|consen 8 LELKEAFQLFDKDGDGKISVEELGAVLRSLGQN-----PTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEA 82 (151)
T ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCC-----CCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccc
Confidence 567889999999999999999999999988665 7789999999999999999999999999999876433
Q ss_pred CHHHHHHHHhhccCCCCCceeHHHHHHHHhcc
Q psy164 126 TPEEIDEMMSTAVDQDTGRIPYEYYINHIMKS 157 (161)
Q Consensus 126 ~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 157 (161)
+.+++.+.++.+|.+++|.|++.++.++|+..
T Consensus 83 ~~~el~eaF~~fD~d~~G~Is~~el~~~l~~l 114 (151)
T KOG0027|consen 83 SSEELKEAFRVFDKDGDGFISASELKKVLTSL 114 (151)
T ss_pred cHHHHHHHHHHHccCCCCcCcHHHHHHHHHHh
Confidence 34589999999999999999999999999864
No 22
>KOG4223|consensus
Probab=99.41 E-value=1.8e-12 Score=91.24 Aligned_cols=146 Identities=14% Similarity=0.166 Sum_probs=112.1
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCC--CCCCc
Q psy164 13 FEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENR--FQPAS 90 (161)
Q Consensus 13 ~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~--~~~~~ 90 (161)
...++..++.+.|.+++|.|+..++...+...--..-..++.+-+..++.+.+|.|+|+++............ .....
T Consensus 75 ~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~ 154 (325)
T KOG4223|consen 75 SQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEED 154 (325)
T ss_pred hHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchh
Confidence 4567889999999999999999999988765433444566777888899999999999999988775321000 00011
Q ss_pred -------HHHHHHHHHhhCCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHhhccCCCCCceeHHHHHHHHhccc
Q psy164 91 -------AEELLKAFRTLDKDNKSYLDKEYLTKLMIEEG-EPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIMKSE 158 (161)
Q Consensus 91 -------~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g-~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~ 158 (161)
...=+.-|+..|.|++|.++++||-.+|..-. ..+.+-.+.+-+...|.|+||+|+++||+.-|...+
T Consensus 155 ~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~ 230 (325)
T KOG4223|consen 155 NEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHE 230 (325)
T ss_pred cHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhcc
Confidence 12345569999999999999999999997743 346666678888999999999999999999887654
No 23
>KOG0044|consensus
Probab=99.41 E-value=9.1e-12 Score=83.23 Aligned_cols=123 Identities=14% Similarity=0.122 Sum_probs=102.4
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCC-CCccchhhHHHHHHHhhhcCCCCCCcHHHHHHHHHhhCCCCCCc
Q psy164 30 KTIDCREVGTVLRALGGCPTEADIQEIIVTCENPE-FGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSY 108 (161)
Q Consensus 30 g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~-~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~ 108 (161)
..+....+..+... -..+..+++.+.+.+-.+. +|.++..+|..+++...+. .........+|+.||.+++|+
T Consensus 7 ~~~~~~~~e~l~~~--t~f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~----gd~~~y~~~vF~~fD~~~dg~ 80 (193)
T KOG0044|consen 7 SKLQPESLEQLVQQ--TKFSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPD----GDASKYAELVFRTFDKNKDGT 80 (193)
T ss_pred ccCCcHHHHHHHHh--cCCCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCC----CCHHHHHHHHHHHhcccCCCC
Confidence 34455555555432 2456788999998888776 8999999999999988764 277788999999999999999
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHhhccCCCCCceeHHHHHHHHhccc
Q psy164 109 LDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIMKSE 158 (161)
Q Consensus 109 I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~ 158 (161)
|+..||..++........++-+.+.++.+|.|++|.|+++|+++++....
T Consensus 81 i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~ 130 (193)
T KOG0044|consen 81 IDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIY 130 (193)
T ss_pred cCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHH
Confidence 99999999998876668888899999999999999999999999987654
No 24
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.40 E-value=1.5e-11 Score=79.59 Aligned_cols=103 Identities=17% Similarity=0.140 Sum_probs=90.3
Q ss_pred HHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCCCCCCcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHc-CCCCCHHH
Q psy164 51 ADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEE-GEPFTPEE 129 (161)
Q Consensus 51 ~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~-g~~~~~~~ 129 (161)
++++..|..+|.+++|.|++.++..+++.+... .+..++..+|..+|. +.|+|+..+|..+|... ...-+.++
T Consensus 20 ~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~-----~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Ee 93 (160)
T COG5126 20 QELKEAFQLFDRDSDGLIDRNELGKILRSLGFN-----PSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEE 93 (160)
T ss_pred HHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCC-----CcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHH
Confidence 345667888899999999999999999966544 788999999999999 99999999999999884 45667899
Q ss_pred HHHHHhhccCCCCCceeHHHHHHHHhcccc
Q psy164 130 IDEMMSTAVDQDTGRIPYEYYINHIMKSEE 159 (161)
Q Consensus 130 ~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~ 159 (161)
+.+.++.+|.|++|+|+..++..+++..-+
T Consensus 94 l~~aF~~fD~d~dG~Is~~eL~~vl~~lge 123 (160)
T COG5126 94 LREAFKLFDKDHDGYISIGELRRVLKSLGE 123 (160)
T ss_pred HHHHHHHhCCCCCceecHHHHHHHHHhhcc
Confidence 999999999999999999999999986544
No 25
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.39 E-value=2.7e-12 Score=72.07 Aligned_cols=62 Identities=26% Similarity=0.455 Sum_probs=54.6
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHH----HHHHHHHHhCCCCCCccchhhHHHHH
Q psy164 16 KIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEA----DIQEIIVTCENPEFGNIALSRFLPIV 77 (161)
Q Consensus 16 ~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~----~~~~l~~~~d~~~~~~i~~~ef~~~~ 77 (161)
+|+++|..+|.+++|+|+.+||..++..++...+.. .++.++..+|.+++|.|+|.||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 478999999999999999999999999998766554 45556999999999999999999864
No 26
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.38 E-value=2.6e-12 Score=75.91 Aligned_cols=66 Identities=18% Similarity=0.308 Sum_probs=59.2
Q ss_pred HHHHHHHHhhCC-CC-CCcccHHHHHHHHH---HcCCCCCHHHHHHHHhhccCCCCCceeHHHHHHHHhcc
Q psy164 92 EELLKAFRTLDK-DN-KSYLDKEYLTKLMI---EEGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIMKS 157 (161)
Q Consensus 92 ~~~~~~f~~~D~-~~-~g~I~~~el~~~l~---~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 157 (161)
..+-.+|+.||. ++ +|+|+.+||++++. .+|.+++++++.++++.+|.|++|.|+|.+|+.+|.+.
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 456778999987 66 89999999999997 37999999999999999999999999999999998753
No 27
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.38 E-value=7e-12 Score=74.10 Aligned_cols=70 Identities=14% Similarity=0.299 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhhC-CCCCC-cccHHHHHHHHHH-----hCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhh
Q psy164 12 DFEKKIADAFDIFD-HAGNK-TIDCREVGTVLRA-----LGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMI 81 (161)
Q Consensus 12 ~~~~~l~~~f~~~D-~~~~g-~i~~~el~~~l~~-----l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~ 81 (161)
.-+..+.++|..+| .+++| .|+..+|+.+|++ +|..+++.++..++..+|.+++|.|+|.+|+.++....
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~ 81 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVT 81 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 44678999999998 79999 5999999999999 89889999999999999999999999999999887653
No 28
>PTZ00183 centrin; Provisional
Probab=99.37 E-value=2.5e-11 Score=79.50 Aligned_cols=101 Identities=22% Similarity=0.246 Sum_probs=86.3
Q ss_pred HHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCCCCCCcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHc-CCCCCHHH
Q psy164 51 ADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEE-GEPFTPEE 129 (161)
Q Consensus 51 ~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~-g~~~~~~~ 129 (161)
.+++.+|..+|.+++|.|++.+|..++...... .....+..+|+.+|.+++|.|+.++|..++... ....+...
T Consensus 17 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~-----~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~ 91 (158)
T PTZ00183 17 KEIREAFDLFDTDGSGTIDPKELKVAMRSLGFE-----PKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREE 91 (158)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCC-----CCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHH
Confidence 456778889999999999999999999865222 456789999999999999999999999988763 44566778
Q ss_pred HHHHHhhccCCCCCceeHHHHHHHHhc
Q psy164 130 IDEMMSTAVDQDTGRIPYEYYINHIMK 156 (161)
Q Consensus 130 ~~~~~~~~d~~~~g~i~~~eF~~~l~~ 156 (161)
+..+++.+|.+++|.|++.+|..++..
T Consensus 92 l~~~F~~~D~~~~G~i~~~e~~~~l~~ 118 (158)
T PTZ00183 92 ILKAFRLFDDDKTGKISLKNLKRVAKE 118 (158)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 999999999999999999999999874
No 29
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.36 E-value=1.4e-11 Score=74.35 Aligned_cols=72 Identities=14% Similarity=0.165 Sum_probs=66.2
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhh
Q psy164 8 HITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMI 81 (161)
Q Consensus 8 ~l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~ 81 (161)
.+|++++..++.+|..+|.+++|.|+.+++..+++..| ++.+++..++..++.+.+|.|+|++|+.++....
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~ 74 (96)
T smart00027 3 AISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLIY 74 (96)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999876 5778999999999999999999999999888754
No 30
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.36 E-value=5.3e-12 Score=75.82 Aligned_cols=67 Identities=22% Similarity=0.387 Sum_probs=60.1
Q ss_pred HHHHHHHHHhhCC-CC-CCcccHHHHHHHHHH-----cCCCCCHHHHHHHHhhccCCCCCceeHHHHHHHHhcc
Q psy164 91 AEELLKAFRTLDK-DN-KSYLDKEYLTKLMIE-----EGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIMKS 157 (161)
Q Consensus 91 ~~~~~~~f~~~D~-~~-~g~I~~~el~~~l~~-----~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 157 (161)
...+..+|+.||. ++ +|.|+..||+.++.. +|..++.+++..++..+|.+++|.|+|.+|+.++...
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4678999999997 87 799999999999986 4667899999999999999999999999999988753
No 31
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.35 E-value=4.1e-12 Score=68.43 Aligned_cols=52 Identities=15% Similarity=0.370 Sum_probs=49.0
Q ss_pred CCCcccHHHHHHHHHHcCCC-CCHHHHHHHHhhccCCCCCceeHHHHHHHHhc
Q psy164 105 NKSYLDKEYLTKLMIEEGEP-FTPEEIDEMMSTAVDQDTGRIPYEYYINHIMK 156 (161)
Q Consensus 105 ~~g~I~~~el~~~l~~~g~~-~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 156 (161)
++|.|+.++|+.+|..+|.. ++++++..++..+|.+++|.|+|.||+.+|..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999889999 99999999999999999999999999999863
No 32
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.35 E-value=6.5e-12 Score=75.17 Aligned_cols=65 Identities=15% Similarity=0.326 Sum_probs=56.8
Q ss_pred HHHHHHHHhhC-CCCCC-cccHHHHHHHHHH-c----CCCCCHHHHHHHHhhccCCCCCceeHHHHHHHHhc
Q psy164 92 EELLKAFRTLD-KDNKS-YLDKEYLTKLMIE-E----GEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIMK 156 (161)
Q Consensus 92 ~~~~~~f~~~D-~~~~g-~I~~~el~~~l~~-~----g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 156 (161)
..+..+|+.|| .+++| +|+.+||+.++.. + +...++.++..++..+|.|++|.|+|.||+.+|.+
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 56788899998 78998 5999999999977 3 33457889999999999999999999999999875
No 33
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.34 E-value=8.1e-12 Score=74.72 Aligned_cols=67 Identities=16% Similarity=0.337 Sum_probs=59.2
Q ss_pred HHHHHHHHHhhC-CCCCC-cccHHHHHHHHHH-cC----CCCCHHHHHHHHhhccCCCCCceeHHHHHHHHhcc
Q psy164 91 AEELLKAFRTLD-KDNKS-YLDKEYLTKLMIE-EG----EPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIMKS 157 (161)
Q Consensus 91 ~~~~~~~f~~~D-~~~~g-~I~~~el~~~l~~-~g----~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 157 (161)
...++.+|+.|| .+++| .|+..||+.+|.. +| ..++++++..++..+|.+++|.|+|.+|+.++...
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 367899999997 99999 5999999999985 54 34688999999999999999999999999988753
No 34
>PTZ00184 calmodulin; Provisional
Probab=99.33 E-value=5.5e-11 Score=77.03 Aligned_cols=101 Identities=17% Similarity=0.206 Sum_probs=84.5
Q ss_pred HHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCCCCCCcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHc-CCCCCHHH
Q psy164 51 ADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEE-GEPFTPEE 129 (161)
Q Consensus 51 ~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~-g~~~~~~~ 129 (161)
+.+...|..+|.+++|.|++++|..++...... .....+..+|+.+|.+++|.|+.++|..++... ........
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~-----~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~ 85 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQN-----PTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEE 85 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCC-----CCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHH
Confidence 345677888999999999999999988654222 446789999999999999999999999998864 33455667
Q ss_pred HHHHHhhccCCCCCceeHHHHHHHHhc
Q psy164 130 IDEMMSTAVDQDTGRIPYEYYINHIMK 156 (161)
Q Consensus 130 ~~~~~~~~d~~~~g~i~~~eF~~~l~~ 156 (161)
+..+++.+|.+++|.|+..+|..++..
T Consensus 86 ~~~~F~~~D~~~~g~i~~~e~~~~l~~ 112 (149)
T PTZ00184 86 IKEAFKVFDRDGNGFISAAELRHVMTN 112 (149)
T ss_pred HHHHHHhhCCCCCCeEeHHHHHHHHHH
Confidence 889999999999999999999988864
No 35
>KOG0040|consensus
Probab=99.32 E-value=1.4e-11 Score=100.62 Aligned_cols=141 Identities=28% Similarity=0.402 Sum_probs=113.7
Q ss_pred ccccCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCC-------CHHHHHHHHHHhCCCCCCccchhhHHHH
Q psy164 4 SEEVHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCP-------TEADIQEIIVTCENPEFGNIALSRFLPI 76 (161)
Q Consensus 4 ~~~~~l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~-------~~~~~~~l~~~~d~~~~~~i~~~ef~~~ 76 (161)
.+..+.|++++.++.-+|..||.+.+|.++..+|..+|+++|+.+ ++++++.++..+|++.+|.|+..+|+.+
T Consensus 2242 rn~~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~af 2321 (2399)
T KOG0040|consen 2242 RNHNGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAF 2321 (2399)
T ss_pred hccCCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHH
Confidence 456899999999999999999999999999999999999999865 2458999999999999999999999999
Q ss_pred HHHhhhcCCCCCCcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhh----ccC----CCCCceeHH
Q psy164 77 VSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMST----AVD----QDTGRIPYE 148 (161)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~----~d~----~~~g~i~~~ 148 (161)
+...-... .....++..+|+.+|. +..||+..++.+. +|++++.-++.. ++. .-.+.+.|.
T Consensus 2322 mi~~ETeN---I~s~~eIE~AfraL~a-~~~yvtke~~~~~-------ltreqaefc~s~m~~~~e~~~~~s~q~~l~y~ 2390 (2399)
T KOG0040|consen 2322 MISKETEN---ILSSEEIEDAFRALDA-GKPYVTKEELYQN-------LTREQAEFCMSKMKPYAETSSGRSDQVALDYK 2390 (2399)
T ss_pred HHhccccc---ccchHHHHHHHHHhhc-CCccccHHHHHhc-------CCHHHHHHHHHHhhhhcccccCCCccccccHH
Confidence 87653321 2345699999999998 8899999988654 455554444333 343 234579999
Q ss_pred HHHHHHh
Q psy164 149 YYINHIM 155 (161)
Q Consensus 149 eF~~~l~ 155 (161)
+|++.+-
T Consensus 2391 dfv~sl~ 2397 (2399)
T KOG0040|consen 2391 DFVNSLF 2397 (2399)
T ss_pred HHHHHHh
Confidence 9998764
No 36
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.29 E-value=1.7e-11 Score=68.87 Aligned_cols=61 Identities=15% Similarity=0.253 Sum_probs=56.4
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhccCCCCCceeHHHHHHHHhcc
Q psy164 95 LKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIMKS 157 (161)
Q Consensus 95 ~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 157 (161)
+.+|+.+|.+++|.|+.+|++.++...| ++.+++..++..++.+++|.|++.+|+..+...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 5789999999999999999999999987 588899999999999999999999999988654
No 37
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.29 E-value=1.8e-11 Score=73.81 Aligned_cols=66 Identities=12% Similarity=0.250 Sum_probs=60.4
Q ss_pred CcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhccCCCCCceeHHHHHHHHhc
Q psy164 89 ASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIMK 156 (161)
Q Consensus 89 ~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 156 (161)
.....++.+|+.+|.+++|.|+.++++.++...| ++.+++..++..+|.+++|.|+|++|+.++..
T Consensus 7 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 7 EDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 3446899999999999999999999999999976 78999999999999999999999999998764
No 38
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.26 E-value=5.8e-11 Score=65.22 Aligned_cols=62 Identities=31% Similarity=0.522 Sum_probs=58.3
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhccCCCCCceeHHHHHHHHh
Q psy164 94 LLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIM 155 (161)
Q Consensus 94 ~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 155 (161)
+..+|..+|.+++|.|+.+++..++..++.+.+.+.+..++..++.+++|.|++.+|+.+++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~~ 63 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELMA 63 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHhC
Confidence 56789999999999999999999999999999999999999999999999999999998763
No 39
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.26 E-value=3.3e-11 Score=71.50 Aligned_cols=67 Identities=21% Similarity=0.363 Sum_probs=59.4
Q ss_pred HHHHHHHHHhhCC--CCCCcccHHHHHHHHHH-cCCCC----CHHHHHHHHhhccCCCCCceeHHHHHHHHhcc
Q psy164 91 AEELLKAFRTLDK--DNKSYLDKEYLTKLMIE-EGEPF----TPEEIDEMMSTAVDQDTGRIPYEYYINHIMKS 157 (161)
Q Consensus 91 ~~~~~~~f~~~D~--~~~g~I~~~el~~~l~~-~g~~~----~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 157 (161)
...++.+|..||. +++|.|+.++|..++.. +|..+ +..++..++..+|.+++|.|+|.+|+.++...
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 4678999999999 89999999999999986 56444 58999999999999999999999999988764
No 40
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.25 E-value=9e-11 Score=70.19 Aligned_cols=69 Identities=14% Similarity=0.359 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhhC-CCCCC-cccHHHHHHHHHH-hC----CCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHh
Q psy164 12 DFEKKIADAFDIFD-HAGNK-TIDCREVGTVLRA-LG----GCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGM 80 (161)
Q Consensus 12 ~~~~~l~~~f~~~D-~~~~g-~i~~~el~~~l~~-l~----~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 80 (161)
.-+..++++|..+| .+++| .|+..+|..+|+. +| ..++.++++.++..+|.+++|.|+|.+|+.++..+
T Consensus 6 ~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 6 TAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 34578999999997 99999 5999999999985 54 35688999999999999999999999999988865
No 41
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.25 E-value=6.7e-11 Score=70.16 Aligned_cols=70 Identities=16% Similarity=0.331 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhhCC--CCCCcccHHHHHHHHHH-hCCC----CCHHHHHHHHHHhCCCCCCccchhhHHHHHHHh
Q psy164 11 NDFEKKIADAFDIFDH--AGNKTIDCREVGTVLRA-LGGC----PTEADIQEIIVTCENPEFGNIALSRFLPIVSGM 80 (161)
Q Consensus 11 ~~~~~~l~~~f~~~D~--~~~g~i~~~el~~~l~~-l~~~----~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 80 (161)
+++++.++.+|..+|. +++|.|+.++|..+++. +|.. ++..++..++..++.+++|.|+|.+|+.++...
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 5788899999999999 89999999999999976 5544 358899999999999999999999999988865
No 42
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.24 E-value=7.1e-11 Score=69.92 Aligned_cols=67 Identities=25% Similarity=0.357 Sum_probs=57.9
Q ss_pred HHHHHHHHHh-hCCCCCC-cccHHHHHHHHHHc-----CCCCCHHHHHHHHhhccCCCCCceeHHHHHHHHhcc
Q psy164 91 AEELLKAFRT-LDKDNKS-YLDKEYLTKLMIEE-----GEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIMKS 157 (161)
Q Consensus 91 ~~~~~~~f~~-~D~~~~g-~I~~~el~~~l~~~-----g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 157 (161)
...+..+|+. +|.+++| +|+.+||+.++... +...++.++..+++.+|.|+||.|+|.||+.+|...
T Consensus 8 i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 8 IESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 3567889998 6787876 99999999999885 345678899999999999999999999999988753
No 43
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.24 E-value=1.2e-10 Score=68.81 Aligned_cols=70 Identities=10% Similarity=0.325 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhhCC-CC-CCcccHHHHHHHHH---HhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHh
Q psy164 11 NDFEKKIADAFDIFDH-AG-NKTIDCREVGTVLR---ALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGM 80 (161)
Q Consensus 11 ~~~~~~l~~~f~~~D~-~~-~g~i~~~el~~~l~---~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 80 (161)
++.+..+-.+|..+|. ++ +|+|+.+||+.+++ ++|..++.+++..++..+|.+++|.|+|.+|+.++..+
T Consensus 6 e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 6 DQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 4567788899999998 66 89999999999997 36888999999999999999999999999999988865
No 44
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.23 E-value=1.2e-10 Score=69.97 Aligned_cols=69 Identities=14% Similarity=0.349 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhhCC-CC-CCcccHHHHHHHHHH-----hCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHh
Q psy164 12 DFEKKIADAFDIFDH-AG-NKTIDCREVGTVLRA-----LGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGM 80 (161)
Q Consensus 12 ~~~~~l~~~f~~~D~-~~-~g~i~~~el~~~l~~-----l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 80 (161)
.-...+..+|..+|. ++ +|+|+..++..+++. +|..++.+++..++..+|.+++|.|+|.+|+.++...
T Consensus 5 ~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 5 HAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 346678999999997 87 699999999999986 5778899999999999999999999999999888754
No 45
>KOG0028|consensus
Probab=99.23 E-value=3.3e-10 Score=72.31 Aligned_cols=104 Identities=23% Similarity=0.258 Sum_probs=90.0
Q ss_pred HHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCCCCCCcHHHHHHHHHhhCCCCCCcccHHHHHHHHHH-cCCCCCHHH
Q psy164 51 ADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIE-EGEPFTPEE 129 (161)
Q Consensus 51 ~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~-~g~~~~~~~ 129 (161)
++++..+..++.+++|.|++.++...+..+--. ....++..+..-+|++++|.|+.++|+.++.. +|+.-+.++
T Consensus 33 q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE-----~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eE 107 (172)
T KOG0028|consen 33 QEIKEAFELFDPDMAGKIDVEELKVAMRALGFE-----PKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEE 107 (172)
T ss_pred hhHHHHHHhhccCCCCcccHHHHHHHHHHcCCC-----cchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHH
Confidence 567788899999999999999997777665333 55688899999999999999999999999866 788789999
Q ss_pred HHHHHhhccCCCCCceeHHHHHHHHhcccc
Q psy164 130 IDEMMSTAVDQDTGRIPYEYYINHIMKSEE 159 (161)
Q Consensus 130 ~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~ 159 (161)
+..+|+.+|.|++|+||..+|...+..-.+
T Consensus 108 i~~afrl~D~D~~Gkis~~~lkrvakeLge 137 (172)
T KOG0028|consen 108 IKKAFRLFDDDKTGKISQRNLKRVAKELGE 137 (172)
T ss_pred HHHHHHcccccCCCCcCHHHHHHHHHHhCc
Confidence 999999999999999999999998876443
No 46
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.19 E-value=3e-10 Score=67.97 Aligned_cols=70 Identities=11% Similarity=0.280 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhhC-CCCCC-cccHHHHHHHHHH-h----CCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhh
Q psy164 12 DFEKKIADAFDIFD-HAGNK-TIDCREVGTVLRA-L----GGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMI 81 (161)
Q Consensus 12 ~~~~~l~~~f~~~D-~~~~g-~i~~~el~~~l~~-l----~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~ 81 (161)
.-+..+.++|..+| .+++| +|+..||+.++.. + +...+..++..++..+|.+++|.|+|.+|+.++..+.
T Consensus 7 ~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 7 GAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 44667889999999 67898 5999999999976 3 3345778999999999999999999999999988763
No 47
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.17 E-value=1.9e-10 Score=71.18 Aligned_cols=64 Identities=14% Similarity=0.133 Sum_probs=55.7
Q ss_pred cHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhccCCCCCceeHHHHHHHHhccc
Q psy164 90 SAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIMKSE 158 (161)
Q Consensus 90 ~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~ 158 (161)
....+..+|..+|.|++|.|+.+||..+. + ......+..++..+|.|++|.||++||..++ ..+
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l--~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl-~~~ 109 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR--L--DPNEHCIKPFFESCDLDKDGSISLDEWCYCF-IKE 109 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH--c--cchHHHHHHHHHHHCCCCCCCCCHHHHHHHH-hCh
Confidence 34688999999999999999999999877 2 2556778999999999999999999999999 443
No 48
>PF14658 EF-hand_9: EF-hand domain
Probab=99.17 E-value=1.9e-10 Score=63.20 Aligned_cols=61 Identities=10% Similarity=0.243 Sum_probs=57.3
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHhhccCCCC-CceeHHHHHHHHhc
Q psy164 96 KAFRTLDKDNKSYLDKEYLTKLMIEEGE-PFTPEEIDEMMSTAVDQDT-GRIPYEYYINHIMK 156 (161)
Q Consensus 96 ~~f~~~D~~~~g~I~~~el~~~l~~~g~-~~~~~~~~~~~~~~d~~~~-g~i~~~eF~~~l~~ 156 (161)
.+|.+||.++.|.|...++..+|+.++. .+++.+++.+.+.+|.++. |.|+++.|+..|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 4799999999999999999999999988 8999999999999999887 99999999999874
No 49
>KOG2643|consensus
Probab=99.16 E-value=5.4e-10 Score=81.79 Aligned_cols=130 Identities=12% Similarity=0.196 Sum_probs=101.5
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHhC-CCCCH--HHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCCCCCCcHHH
Q psy164 17 IADAFDIFDHAGNKTIDCREVGTVLRALG-GCPTE--ADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQPASAEE 93 (161)
Q Consensus 17 l~~~f~~~D~~~~g~i~~~el~~~l~~l~-~~~~~--~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~ 93 (161)
++--|..+|+..+|.|+..+|..+|-... .+... ..++++-..++.+ +..|++.||..+.... +....
T Consensus 320 l~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl--------~~l~d 390 (489)
T KOG2643|consen 320 LELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFL--------NNLND 390 (489)
T ss_pred HHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHH--------hhhhH
Confidence 35568889998889999999998875543 32222 2456666677644 5569999999998876 44466
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHH-cCCCCCHHHHHHHHhhccCCCCCceeHHHHHHHHhc
Q psy164 94 LLKAFRTLDKDNKSYLDKEYLTKLMIE-EGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIMK 156 (161)
Q Consensus 94 ~~~~f~~~D~~~~g~I~~~el~~~l~~-~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 156 (161)
+..|.+.|-. ..+.|+..+|+++... .|.++++..++.++..+|.|+||.++++||+..|++
T Consensus 391 fd~Al~fy~~-Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~ 453 (489)
T KOG2643|consen 391 FDIALRFYHM-AGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKR 453 (489)
T ss_pred HHHHHHHHHH-cCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHH
Confidence 6666666643 4588999999999887 699999999999999999999999999999999875
No 50
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.14 E-value=3.6e-10 Score=63.42 Aligned_cols=61 Identities=16% Similarity=0.194 Sum_probs=55.7
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHh
Q psy164 18 ADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGM 80 (161)
Q Consensus 18 ~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 80 (161)
+++|..+|.+++|.|+.+++..++..+|. +.+++..++..++.+++|.|+|.+|+.++...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 57899999999999999999999998875 77889999999999999999999999988764
No 51
>PLN02964 phosphatidylserine decarboxylase
Probab=99.14 E-value=1e-09 Score=85.42 Aligned_cols=120 Identities=8% Similarity=0.048 Sum_probs=89.1
Q ss_pred CcccHHHHHHHHHH--hCC-CCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCCCCCCcHH---HHHHHHHhhCC
Q psy164 30 KTIDCREVGTVLRA--LGG-CPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQPASAE---ELLKAFRTLDK 103 (161)
Q Consensus 30 g~i~~~el~~~l~~--l~~-~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~---~~~~~f~~~D~ 103 (161)
..++.+++...... ..+ ....+++...|..+|.+++|.+ +......+.. .. .... .+..+|+.+|.
T Consensus 119 ~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i-Lg~ilrslG~--~~-----pte~e~~fi~~mf~~~D~ 190 (644)
T PLN02964 119 NRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSSNKV-VGSIFVSCSI--ED-----PVETERSFARRILAIVDY 190 (644)
T ss_pred CCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCCCcC-HHHHHHHhCC--CC-----CCHHHHHHHHHHHHHhCC
Confidence 34666666654332 111 1123567778999999999986 3332222221 01 2223 48999999999
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhccCCCCCceeHHHHHHHHhcc
Q psy164 104 DNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIMKS 157 (161)
Q Consensus 104 ~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 157 (161)
+++|.|+.+||..++..++...+++++..+++.+|.|++|.|+++||.+.|...
T Consensus 191 DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 191 DEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred CCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 999999999999999999988899999999999999999999999999998874
No 52
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.12 E-value=4.9e-10 Score=60.22 Aligned_cols=52 Identities=17% Similarity=0.298 Sum_probs=48.8
Q ss_pred CCCcccHHHHHHHHHHhCCC-CCHHHHHHHHHHhCCCCCCccchhhHHHHHHH
Q psy164 28 GNKTIDCREVGTVLRALGGC-PTEADIQEIIVTCENPEFGNIALSRFLPIVSG 79 (161)
Q Consensus 28 ~~g~i~~~el~~~l~~l~~~-~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 79 (161)
.+|.|+.++|..++..+|.. ++++++..++..+|.+++|.|+|.||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 37999999999999889999 99999999999999999999999999998863
No 53
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.07 E-value=1.2e-09 Score=59.89 Aligned_cols=61 Identities=31% Similarity=0.595 Sum_probs=56.9
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHH
Q psy164 17 IADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIV 77 (161)
Q Consensus 17 l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~ 77 (161)
+..+|..+|.+++|.|+..++..++..++..++.+.+..++..++.+++|.|++.+|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5778999999999999999999999999999999999999999999999999999998764
No 54
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=99.06 E-value=9.4e-10 Score=65.14 Aligned_cols=66 Identities=17% Similarity=0.328 Sum_probs=57.2
Q ss_pred HHHHHHHHhhCCC--CCCcccHHHHHHHHH-HcCCCCC----HHHHHHHHhhccCCCCCceeHHHHHHHHhcc
Q psy164 92 EELLKAFRTLDKD--NKSYLDKEYLTKLMI-EEGEPFT----PEEIDEMMSTAVDQDTGRIPYEYYINHIMKS 157 (161)
Q Consensus 92 ~~~~~~f~~~D~~--~~g~I~~~el~~~l~-~~g~~~~----~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 157 (161)
..+...|+.|+.. ++|+|+.+||+.++. .+|..++ +.++..++..+|.+++|.|+|.+|+.++...
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 5677889999765 489999999999997 5676666 8999999999999999999999999988753
No 55
>KOG0034|consensus
Probab=99.04 E-value=4.4e-09 Score=70.37 Aligned_cols=104 Identities=19% Similarity=0.230 Sum_probs=84.3
Q ss_pred HHHHHhhCCCCCCc-ccHHHHHHHHHHhCCCCCHH-HHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCCC--CCCcHHH
Q psy164 18 ADAFDIFDHAGNKT-IDCREVGTVLRALGGCPTEA-DIQEIIVTCENPEFGNIALSRFLPIVSGMISENRF--QPASAEE 93 (161)
Q Consensus 18 ~~~f~~~D~~~~g~-i~~~el~~~l~~l~~~~~~~-~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~--~~~~~~~ 93 (161)
..++..++.+++|. |+..+|...+.-+...-... .++-.++.||.+++|.|+.+++..++......... .......
T Consensus 69 ~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i 148 (187)
T KOG0034|consen 69 DRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDI 148 (187)
T ss_pred HHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHH
Confidence 45778899988888 99999999998775544444 78888999999999999999999999998765322 1122345
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHc
Q psy164 94 LLKAFRTLDKDNKSYLDKEYLTKLMIEE 121 (161)
Q Consensus 94 ~~~~f~~~D~~~~g~I~~~el~~~l~~~ 121 (161)
+...|..+|.+++|.|+.+|+.+++...
T Consensus 149 ~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 149 VDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 7778999999999999999999998764
No 56
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.04 E-value=3.9e-09 Score=62.51 Aligned_cols=70 Identities=10% Similarity=0.227 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHh-hCCCCCC-cccHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHh
Q psy164 11 NDFEKKIADAFDI-FDHAGNK-TIDCREVGTVLRAL-----GGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGM 80 (161)
Q Consensus 11 ~~~~~~l~~~f~~-~D~~~~g-~i~~~el~~~l~~l-----~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 80 (161)
+..+..+..+|.. +|.+++| +|+.+||..++... +-...+.++..++..+|.+++|.|+|++|+.++..+
T Consensus 5 e~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 5 ERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4567789999999 7787865 99999999999865 334567889999999999999999999999988765
No 57
>PF14658 EF-hand_9: EF-hand domain
Probab=99.02 E-value=2.2e-09 Score=58.95 Aligned_cols=62 Identities=29% Similarity=0.520 Sum_probs=57.8
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCC-CccchhhHHHHHHHh
Q psy164 19 DAFDIFDHAGNKTIDCREVGTVLRALGG-CPTEADIQEIIVTCENPEF-GNIALSRFLPIVSGM 80 (161)
Q Consensus 19 ~~f~~~D~~~~g~i~~~el~~~l~~l~~-~~~~~~~~~l~~~~d~~~~-~~i~~~ef~~~~~~~ 80 (161)
.+|..||.++.|.+...++..+|+..+. .|++.+++.+...+|+++. |.|+++.|+.++..+
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRDW 65 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHHh
Confidence 3699999999999999999999999988 9999999999999999996 999999999998754
No 58
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.94 E-value=7.9e-09 Score=64.03 Aligned_cols=65 Identities=15% Similarity=0.224 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHH
Q psy164 9 ITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIV 77 (161)
Q Consensus 9 l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~ 77 (161)
+.+.....+.-.|..+|.+++|.|+.+|+..+. +.+.+..+..++..+|.+++|.|++.||..++
T Consensus 42 ~~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 42 LYPMCKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred hhHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 456778889999999999999999999999875 44567788999999999999999999999998
No 59
>KOG0031|consensus
Probab=98.90 E-value=8.7e-09 Score=65.48 Aligned_cols=62 Identities=27% Similarity=0.534 Sum_probs=50.7
Q ss_pred CcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhccCCCCCceeHHHHHHHH
Q psy164 89 ASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHI 154 (161)
Q Consensus 89 ~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 154 (161)
...++++.||.++|.|++|.|+.++|+.++.++|...++++++.|++.+. |.|+|--|+..+
T Consensus 29 ~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea~----gPINft~FLTmf 90 (171)
T KOG0031|consen 29 SQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEAP----GPINFTVFLTMF 90 (171)
T ss_pred HHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhCC----CCeeHHHHHHHH
Confidence 34479999999999999999999999999999999999999988877642 345555555443
No 60
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.86 E-value=2.4e-08 Score=59.08 Aligned_cols=70 Identities=16% Similarity=0.237 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhhCCC--CCCcccHHHHHHHHH-HhCCCCC----HHHHHHHHHHhCCCCCCccchhhHHHHHHHhh
Q psy164 12 DFEKKIADAFDIFDHA--GNKTIDCREVGTVLR-ALGGCPT----EADIQEIIVTCENPEFGNIALSRFLPIVSGMI 81 (161)
Q Consensus 12 ~~~~~l~~~f~~~D~~--~~g~i~~~el~~~l~-~l~~~~~----~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~ 81 (161)
.-+..+-.+|..++.. .+|.|+.+||..++. .+|..++ ..++..++..+|.+++|.|+|.+|+.++....
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 4466788899999966 479999999999996 5666666 89999999999999999999999999888653
No 61
>KOG0041|consensus
Probab=98.86 E-value=1.3e-08 Score=67.49 Aligned_cols=66 Identities=18% Similarity=0.368 Sum_probs=61.0
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhccCCCCCceeHHHHHHHHhc
Q psy164 91 AEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIMK 156 (161)
Q Consensus 91 ~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 156 (161)
...+..+|+.||.+.+|+|+..||+.+|..+|.+-|.--+..|++..|.|.+|+|++-+|+-.++.
T Consensus 98 Ik~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrk 163 (244)
T KOG0041|consen 98 IKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRK 163 (244)
T ss_pred HHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 367889999999999999999999999999999888888999999999999999999999877664
No 62
>KOG0041|consensus
Probab=98.82 E-value=7e-08 Score=64.06 Aligned_cols=108 Identities=17% Similarity=0.255 Sum_probs=83.7
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCCCC
Q psy164 8 HITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQ 87 (161)
Q Consensus 8 ~l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~ 87 (161)
.++..++..+..+|..+|.+.+|+|+..|++.++.++|-+-+-=-++.++..+|.+.+|+|+|.+|+-+++..... .+
T Consensus 92 eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaag-EL- 169 (244)
T KOG0041|consen 92 EFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAG-EL- 169 (244)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhcc-cc-
Confidence 5788999999999999999999999999999999999988776678899999999999999999999998876543 11
Q ss_pred CCcHHHHHHHHH--hhCCCCCCcccHHHHHHHH
Q psy164 88 PASAEELLKAFR--TLDKDNKSYLDKEYLTKLM 118 (161)
Q Consensus 88 ~~~~~~~~~~f~--~~D~~~~g~I~~~el~~~l 118 (161)
.....+..+=+ ..|....|+.--..|-.+=
T Consensus 170 -~~ds~~~~LAr~~eVDVskeGV~GAknFFeAK 201 (244)
T KOG0041|consen 170 -QEDSGLLRLARLSEVDVSKEGVSGAKNFFEAK 201 (244)
T ss_pred -ccchHHHHHHHhcccchhhhhhhhHHHHHHHH
Confidence 11222233323 3677777776666554443
No 63
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.81 E-value=8.8e-09 Score=47.73 Aligned_cols=29 Identities=38% Similarity=0.533 Sum_probs=22.3
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHc
Q psy164 93 ELLKAFRTLDKDNKSYLDKEYLTKLMIEE 121 (161)
Q Consensus 93 ~~~~~f~~~D~~~~g~I~~~el~~~l~~~ 121 (161)
+++.+|+.||+|++|+|+.+||..+++++
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 46778888888888888888888877653
No 64
>KOG0036|consensus
Probab=98.71 E-value=4.4e-07 Score=66.47 Aligned_cols=126 Identities=16% Similarity=0.179 Sum_probs=96.4
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCCCCCCcHHH
Q psy164 14 EKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQPASAEE 93 (161)
Q Consensus 14 ~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~ 93 (161)
.+..+.+|...|.+.+|.++.++|...+. ..+.++..+|...|.+++|.|+..|....+...-.. -..++
T Consensus 50 ~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~-----~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~-----l~de~ 119 (463)
T KOG0036|consen 50 YEAAKMLFSAMDANRDGRVDYSEFKRYLD-----NKELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQ-----LSDEK 119 (463)
T ss_pred hHHHHHHHHhcccCcCCcccHHHHHHHHH-----HhHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCc-----cCHHH
Confidence 34567788999999999999999999886 346677889999999999999999988888876444 55677
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhh------ccCCCCCceeHHHHHHHH
Q psy164 94 LLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMST------AVDQDTGRIPYEYYINHI 154 (161)
Q Consensus 94 ~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~------~d~~~~g~i~~~eF~~~l 154 (161)
+..+|+..|+++++.|+.+|+++.+.-.. .+.+..+... +|.+.+..|. ++|....
T Consensus 120 ~~k~~e~~d~~g~~~I~~~e~rd~~ll~p----~s~i~di~~~W~h~~~idigE~~~iP-dg~s~~e 181 (463)
T KOG0036|consen 120 AAKFFEHMDKDGKATIDLEEWRDHLLLYP----ESDLEDIYDFWRHVLLIDIGEDAVLP-DGDSKLE 181 (463)
T ss_pred HHHHHHHhccCCCeeeccHHHHhhhhcCC----hhHHHHHHHhhhhheEEEccccccCC-cchHHHH
Confidence 88899999999999999999998876533 3444444333 4666676666 6665543
No 65
>KOG2562|consensus
Probab=98.71 E-value=3e-07 Score=68.17 Aligned_cols=136 Identities=17% Similarity=0.157 Sum_probs=100.9
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhC----CCCCCccchhhHHHHHHHhhhcC
Q psy164 9 ITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCE----NPEFGNIALSRFLPIVSGMISEN 84 (161)
Q Consensus 9 l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d----~~~~~~i~~~ef~~~~~~~~~~~ 84 (161)
+|-+.-..+...|-.+|.+.+|.|+.+++...-. -.++.--+.++|..+. ...+|+++|.+|+.++-.....
T Consensus 272 FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d---~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k- 347 (493)
T KOG2562|consen 272 FSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGD---HTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDK- 347 (493)
T ss_pred eeHHHHHHHHHHHhhhccccccccCHHHHHHHhc---cchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccC-
Confidence 4445555566668889999999999999886532 3455677888888333 2348999999999988876554
Q ss_pred CCCCCcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHc-------C-CCCCH-HHHHHHHhhccCCCCCceeHHHHHH
Q psy164 85 RFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEE-------G-EPFTP-EEIDEMMSTAVDQDTGRIPYEYYIN 152 (161)
Q Consensus 85 ~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~-------g-~~~~~-~~~~~~~~~~d~~~~g~i~~~eF~~ 152 (161)
...+.++..|+.+|.+++|.++..|++.+.... | +.++- ..+.+++.....-..++|+..+|..
T Consensus 348 ----~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 348 ----DTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred ----CCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 666889999999999999999999998776542 2 23333 3345566666556688999999887
No 66
>KOG0030|consensus
Probab=98.68 E-value=1.1e-07 Score=59.57 Aligned_cols=63 Identities=29% Similarity=0.444 Sum_probs=56.8
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHH
Q psy164 14 EKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIV 77 (161)
Q Consensus 14 ~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~ 77 (161)
.+.+-+..+.||++++|.|...+|+.+|..+|-.++++++..++.... +.+|.|+|+.|+..+
T Consensus 87 ~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~e-D~nG~i~YE~fVk~i 149 (152)
T KOG0030|consen 87 YEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQE-DSNGCINYEAFVKHI 149 (152)
T ss_pred HHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcccc-ccCCcCcHHHHHHHH
Confidence 456677788999999999999999999999999999999999998875 778999999998765
No 67
>KOG2643|consensus
Probab=98.67 E-value=2.8e-07 Score=67.94 Aligned_cols=130 Identities=19% Similarity=0.281 Sum_probs=90.0
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHh------CC----CCC-----HHHHH--HHHHHhCCCCCCccchhhHHHHHH
Q psy164 16 KIADAFDIFDHAGNKTIDCREVGTVLRAL------GG----CPT-----EADIQ--EIIVTCENPEFGNIALSRFLPIVS 78 (161)
Q Consensus 16 ~l~~~f~~~D~~~~g~i~~~el~~~l~~l------~~----~~~-----~~~~~--~l~~~~d~~~~~~i~~~ef~~~~~ 78 (161)
.++-+|..||.|++|.|+.+||..+..-. |. .++ ..++. .+..-|..++++++++.+|+.++.
T Consensus 234 ~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e 313 (489)
T KOG2643|consen 234 NFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQE 313 (489)
T ss_pred cceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHH
Confidence 45568999999999999999998876421 21 010 11111 233456668899999999999998
Q ss_pred HhhhcCCCCCCcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHc-CCCCCHHH--HHHHHhhccCCCCCceeHHHHHHHHh
Q psy164 79 GMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEE-GEPFTPEE--IDEMMSTAVDQDTGRIPYEYYINHIM 155 (161)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~-g~~~~~~~--~~~~~~~~d~~~~g~i~~~eF~~~l~ 155 (161)
.+.. +-++.-|..+|+..+|.|+..+|..++-.. +.+....+ +...-+.+..+ +-.||+.||..+..
T Consensus 314 ~Lq~---------Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~ 383 (489)
T KOG2643|consen 314 NLQE---------EILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFR 383 (489)
T ss_pred HHHH---------HHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHH
Confidence 6542 467788999999999999999999988775 33332222 34445556444 55788888877643
No 68
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.65 E-value=4.9e-08 Score=46.09 Aligned_cols=30 Identities=33% Similarity=0.574 Sum_probs=26.0
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHH-HcC
Q psy164 93 ELLKAFRTLDKDNKSYLDKEYLTKLMI-EEG 122 (161)
Q Consensus 93 ~~~~~f~~~D~~~~g~I~~~el~~~l~-~~g 122 (161)
+++.+|+.||.+++|+|+.+||+++|. .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 468899999999999999999999998 565
No 69
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.60 E-value=5.8e-07 Score=52.90 Aligned_cols=64 Identities=23% Similarity=0.458 Sum_probs=53.8
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHH-c----CCCCCHHHHHHHHhhccCCCCCceeHHHHHHHHhc
Q psy164 92 EELLKAFRTLDKDNKSYLDKEYLTKLMIE-E----GEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIMK 156 (161)
Q Consensus 92 ~~~~~~f~~~D~~~~g~I~~~el~~~l~~-~----g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 156 (161)
..+..+|+.|.. +.++++..||+.++.. + +..-++..++.+++..|.|+||.|+|.||+.++..
T Consensus 8 ~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 8 EKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 456778999973 4679999999999976 3 34457888999999999999999999999998764
No 70
>KOG4666|consensus
Probab=98.60 E-value=6.2e-08 Score=68.81 Aligned_cols=121 Identities=11% Similarity=0.128 Sum_probs=95.7
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCCCCCCcHHHHHHHHHhhCCCCCCc
Q psy164 29 NKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSY 108 (161)
Q Consensus 29 ~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~ 108 (161)
.+.|...+|...++ ++.+ ..+..+|..||.+++|.++|.+....+..+... +.....++.+|+.|+.+.+|+
T Consensus 241 g~~igi~efa~~l~---vpvs-d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p----~~t~~iiq~afk~f~v~eDg~ 312 (412)
T KOG4666|consen 241 GPDIGIVEFAVNLR---VPVS-DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGP----PVTPVIIQYAFKRFSVAEDGI 312 (412)
T ss_pred CCCcceeEeeeeee---cchh-hhhhhhhheecCCCCCcccHHHHhhhheeeeCC----CCcHHHHHHHHHhcccccccc
Confidence 44444444443322 3333 456778999999999999999999988877665 467788999999999999999
Q ss_pred ccHHHHHHHHHH-cCCCCCHHHHHHHHhhccCCCCCceeHHHHHHHHhcccc
Q psy164 109 LDKEYLTKLMIE-EGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIMKSEE 159 (161)
Q Consensus 109 I~~~el~~~l~~-~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~ 159 (161)
+...+|..+|+. +| +..-.+..++...+...+|+|+|.+|.+++...|+
T Consensus 313 ~ge~~ls~ilq~~lg--v~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~~p~ 362 (412)
T KOG4666|consen 313 SGEHILSLILQVVLG--VEVLRVPVLFPSIEQKDDPKIYASNFRKFAATEPN 362 (412)
T ss_pred cchHHHHHHHHHhcC--cceeeccccchhhhcccCcceeHHHHHHHHHhCch
Confidence 999999999987 56 44445778899999999999999999999987764
No 71
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.59 E-value=1.1e-07 Score=44.06 Aligned_cols=29 Identities=31% Similarity=0.621 Sum_probs=24.1
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q psy164 16 KIADAFDIFDHAGNKTIDCREVGTVLRAL 44 (161)
Q Consensus 16 ~l~~~f~~~D~~~~g~i~~~el~~~l~~l 44 (161)
+++.+|+.+|.+++|+|+.+||..+++++
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 46788888999999999999988888754
No 72
>KOG4251|consensus
Probab=98.55 E-value=4.4e-07 Score=62.32 Aligned_cols=141 Identities=11% Similarity=0.206 Sum_probs=103.9
Q ss_pred HHHHHHHHHHhhCCC-CCCcccHHHHHHHHHH-hCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCC---CC
Q psy164 13 FEKKIADAFDIFDHA-GNKTIDCREVGTVLRA-LGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENR---FQ 87 (161)
Q Consensus 13 ~~~~l~~~f~~~D~~-~~g~i~~~el~~~l~~-l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~---~~ 87 (161)
-.+.++..+..+|.. .+-.++..||..+|+. .........+..++..+|++++..++..+|++........+. +.
T Consensus 196 vlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdid 275 (362)
T KOG4251|consen 196 VLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDID 275 (362)
T ss_pred HHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchH
Confidence 344556666777754 3567788999988863 222344567888999999999999999999997765443321 11
Q ss_pred CCcHHHHHHHHH-hhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhccCCCCCceeHHHHHHH
Q psy164 88 PASAEELLKAFR-TLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINH 153 (161)
Q Consensus 88 ~~~~~~~~~~f~-~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 153 (161)
......-+.-|. .+|.+++|.+|.+||..+.-..+...+-.++..++...|.+++.+++.++.++.
T Consensus 276 dnwvkdRkkEFeElIDsNhDGivTaeELe~y~dP~n~~~alne~~~~ma~~d~n~~~~Ls~eell~r 342 (362)
T KOG4251|consen 276 DNWVKDRKKEFEELIDSNHDGIVTAEELEDYVDPQNFRLALNEVNDIMALTDANNDEKLSLEELLER 342 (362)
T ss_pred HHHHHHHHHHHHHHhhcCCccceeHHHHHhhcCchhhhhhHHHHHHHHhhhccCCCcccCHHHHHHH
Confidence 122233334444 679999999999999999888777788888999999999999999999988753
No 73
>KOG0169|consensus
Probab=98.54 E-value=2.3e-06 Score=67.11 Aligned_cols=144 Identities=17% Similarity=0.267 Sum_probs=120.4
Q ss_pred cccCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcC
Q psy164 5 EEVHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISEN 84 (161)
Q Consensus 5 ~~~~l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~ 84 (161)
....+......++..+|..+|.+++|.++..+...+++.++..+...-+..++...+..+++.+.+.+|..+.......
T Consensus 126 ~~~~~~~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~r- 204 (746)
T KOG0169|consen 126 KSMRQRSRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKR- 204 (746)
T ss_pred chhhhcchHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccC-
Confidence 3455666778899999999999999999999999999999998888888999988877779999999999988876322
Q ss_pred CCCCCcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcC--CCCCHHHHHHHHhhccCC----CCCceeHHHHHHHHhcc
Q psy164 85 RFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEG--EPFTPEEIDEMMSTAVDQ----DTGRIPYEYYINHIMKS 157 (161)
Q Consensus 85 ~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g--~~~~~~~~~~~~~~~d~~----~~g~i~~~eF~~~l~~~ 157 (161)
.++...|..+-.+ .++++..+|..++...+ ...+.+.+..+++.+... ..+.++.+.|.++|...
T Consensus 205 -------pev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S~ 275 (746)
T KOG0169|consen 205 -------PEVYFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFSP 275 (746)
T ss_pred -------chHHHHHHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcCc
Confidence 3888888888544 89999999999999874 457888899999887543 45679999999999763
No 74
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.54 E-value=8.8e-07 Score=53.84 Aligned_cols=65 Identities=12% Similarity=0.345 Sum_probs=57.6
Q ss_pred CCcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhccCCCCCceeHHHHHHHHh
Q psy164 88 PASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIM 155 (161)
Q Consensus 88 ~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 155 (161)
......+..+|+..+. ++|.|+.++.+.++...| ++.+.+..++...|.+++|.++.+||+-.|.
T Consensus 6 ~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 6 PEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp CCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 3556788999999985 689999999999999988 8889999999999999999999999998765
No 75
>KOG0751|consensus
Probab=98.51 E-value=4.6e-06 Score=62.69 Aligned_cols=107 Identities=11% Similarity=0.126 Sum_probs=78.9
Q ss_pred CCCHHHHHHHHHHHHhh---CCCCCCcccHHHHHHHHHH-hCC-CCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhh
Q psy164 8 HITNDFEKKIADAFDIF---DHAGNKTIDCREVGTVLRA-LGG-CPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMIS 82 (161)
Q Consensus 8 ~l~~~~~~~l~~~f~~~---D~~~~g~i~~~el~~~l~~-l~~-~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~ 82 (161)
.+...+-.+|+.+|..+ +.++.-+++.++|....-. ++. ..+++.++.+-...|..++|-|+|+||..+-..++
T Consensus 26 ~lkra~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC- 104 (694)
T KOG0751|consen 26 LLKRADPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLC- 104 (694)
T ss_pred hhccCChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhcc-
Confidence 34455566777777655 4556678999998775433 333 34455555555666777799999999998776664
Q ss_pred cCCCCCCcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHc
Q psy164 83 ENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEE 121 (161)
Q Consensus 83 ~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~ 121 (161)
.+......+|+.||+.++|.+|.+++.+++...
T Consensus 105 ------~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 105 ------APDALFEVAFQLFDRLGNGEVSFEDVADIFGQT 137 (694)
T ss_pred ------CchHHHHHHHHHhcccCCCceehHHHHHHHhcc
Confidence 445788899999999999999999999999764
No 76
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.50 E-value=8.7e-07 Score=53.85 Aligned_cols=70 Identities=11% Similarity=0.162 Sum_probs=60.1
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHh
Q psy164 8 HITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGM 80 (161)
Q Consensus 8 ~l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 80 (161)
.+++++.+.+..+|..++. ++|.|+..+...++...|+ +.+.+..++...|.+.+|.+++.||+.++...
T Consensus 3 ~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L--~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 3 KLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSGL--PRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp --SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTTS--SHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCC--CHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 3688899999999999986 5899999999999987764 46899999999999999999999999988764
No 77
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.48 E-value=2.9e-07 Score=43.42 Aligned_cols=30 Identities=40% Similarity=0.825 Sum_probs=26.4
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHH-HhC
Q psy164 16 KIADAFDIFDHAGNKTIDCREVGTVLR-ALG 45 (161)
Q Consensus 16 ~l~~~f~~~D~~~~g~i~~~el~~~l~-~l~ 45 (161)
+++.+|..+|.+++|+|+..||..+++ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 578999999999999999999999999 575
No 78
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.43 E-value=5.6e-06 Score=48.79 Aligned_cols=69 Identities=10% Similarity=0.313 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH-hC----CCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhh
Q psy164 12 DFEKKIADAFDIFDHAGNKTIDCREVGTVLRA-LG----GCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMI 81 (161)
Q Consensus 12 ~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~-l~----~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~ 81 (161)
.-+..+-.+|..+.. +.+.|+..||+.++.+ ++ -.-.+..+..++...|.+++|.|+|.||+.++..+.
T Consensus 5 ~ai~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 5 HSMEKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 345667788999984 4679999999999964 32 233567899999999999999999999999998753
No 79
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.38 E-value=2.2e-06 Score=63.83 Aligned_cols=55 Identities=18% Similarity=0.193 Sum_probs=49.0
Q ss_pred CcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhccCCCCCceeHHHHHHHHhc
Q psy164 89 ASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIMK 156 (161)
Q Consensus 89 ~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 156 (161)
.....++.+|+.+|.+++|.|+.+||.. +..+|..+|.|++|.|+++||...+..
T Consensus 331 ~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 331 AFTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred hhhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 5567899999999999999999999942 578999999999999999999998764
No 80
>KOG4251|consensus
Probab=98.37 E-value=7.5e-07 Score=61.19 Aligned_cols=144 Identities=9% Similarity=0.079 Sum_probs=93.0
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHH-hC--CCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCC----
Q psy164 13 FEKKIADAFDIFDHAGNKTIDCREVGTVLRA-LG--GCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENR---- 85 (161)
Q Consensus 13 ~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~-l~--~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~---- 85 (161)
-.+.+..+|.+-|.+.+|+|+..|+.+.+.. .. +.-..++-+..|+..|++++|.|+|.+|..-+........
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekeva 178 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVA 178 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHHH
Confidence 3457899999999999999999999887642 11 1112234456688899999999999999876644321100
Q ss_pred ----C-CCCcHHHHHHHHHhhCCCCCC---------cccHHHHHHHHHH-cCCCCCHHHHHHHHhhccCCCCCceeHHHH
Q psy164 86 ----F-QPASAEELLKAFRTLDKDNKS---------YLDKEYLTKLMIE-EGEPFTPEEIDEMMSTAVDQDTGRIPYEYY 150 (161)
Q Consensus 86 ----~-~~~~~~~~~~~f~~~D~~~~g---------~I~~~el~~~l~~-~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF 150 (161)
. .+-...+-.+.|..-+++..| .++.+||..+|.. ....+-..-+..++..+|.|+|..+|-.+|
T Consensus 179 dairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeF 258 (362)
T KOG4251|consen 179 DAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEF 258 (362)
T ss_pred HHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhh
Confidence 0 000111222223222333333 3555788877754 223344556788899999999999999999
Q ss_pred HHHHhc
Q psy164 151 INHIMK 156 (161)
Q Consensus 151 ~~~l~~ 156 (161)
+...-+
T Consensus 259 islpvG 264 (362)
T KOG4251|consen 259 ISLPVG 264 (362)
T ss_pred hcCCCc
Confidence 986544
No 81
>KOG0751|consensus
Probab=98.36 E-value=2.6e-06 Score=63.97 Aligned_cols=124 Identities=16% Similarity=0.260 Sum_probs=75.9
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHhCC------CCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCCCCCCcH
Q psy164 18 ADAFDIFDHAGNKTIDCREVGTVLRALGG------CPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQPASA 91 (161)
Q Consensus 18 ~~~f~~~D~~~~g~i~~~el~~~l~~l~~------~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~ 91 (161)
..+|+.||+.++|.++..++.+++.+..+ .+..+-++..| .......++|.+|.+++.... .
T Consensus 111 ~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~F---g~~~~r~~ny~~f~Q~lh~~~---------~ 178 (694)
T KOG0751|consen 111 EVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHF---GDIRKRHLNYAEFTQFLHEFQ---------L 178 (694)
T ss_pred HHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHh---hhHHHHhccHHHHHHHHHHHH---------H
Confidence 45566666666666666666666654432 22333333322 112234566666666666542 2
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhh-ccCCCCCceeHHHHHHH
Q psy164 92 EELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMST-AVDQDTGRIPYEYYINH 153 (161)
Q Consensus 92 ~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~-~d~~~~g~i~~~eF~~~ 153 (161)
+..+++|+..|+.++|.||.-+++.++-+.-..+....+...+-. .+.+...++|+..|..+
T Consensus 179 E~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~~H~vSf~yf~af 241 (694)
T KOG0751|consen 179 EHAEQAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGNDSHQVSFSYFNAF 241 (694)
T ss_pred HHHHHHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCCccccchHHHHHH
Confidence 357889999999999999999999999887555555556555444 33444446776666543
No 82
>KOG1707|consensus
Probab=98.35 E-value=1.4e-05 Score=61.42 Aligned_cols=145 Identities=17% Similarity=0.256 Sum_probs=102.8
Q ss_pred cccCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH-hCCCCCHHHHH---HHHHHhCCCC--CCccchhhHHHHHH
Q psy164 5 EEVHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRA-LGGCPTEADIQ---EIIVTCENPE--FGNIALSRFLPIVS 78 (161)
Q Consensus 5 ~~~~l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~-l~~~~~~~~~~---~l~~~~d~~~--~~~i~~~ef~~~~~ 78 (161)
+...+++.....+.++|...|.+.+|.++..|+..+=+. ++-++...++. .++...-+++ +..++..-|+.+..
T Consensus 185 ~~qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~ 264 (625)
T KOG1707|consen 185 EEQELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNT 264 (625)
T ss_pred ccccccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHH
Confidence 467899999999999999999999999999999887654 56666655444 4444443444 55677777887766
Q ss_pred HhhhcCC-------------------------------------CCCCcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHc
Q psy164 79 GMISENR-------------------------------------FQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEE 121 (161)
Q Consensus 79 ~~~~~~~-------------------------------------~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~ 121 (161)
.+....+ .+....+.+..+|..||.|++|.+++.||..++...
T Consensus 265 lfiergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~ 344 (625)
T KOG1707|consen 265 LFIERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTA 344 (625)
T ss_pred HHHHhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhC
Confidence 5543211 111124678889999999999999999999999987
Q ss_pred CCCC----CHHHHHHHHhhccCCCCCceeHHHHHHHHh
Q psy164 122 GEPF----TPEEIDEMMSTAVDQDTGRIPYEYYINHIM 155 (161)
Q Consensus 122 g~~~----~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 155 (161)
+... ...+. .-.+..|.++|..|+..+.
T Consensus 345 P~~pW~~~~~~~~------t~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 345 PGSPWTSSPYKDS------TVKNERGWLTLNGFLSQWS 376 (625)
T ss_pred CCCCCCCCccccc------ceecccceeehhhHHHHHH
Confidence 6433 11111 1124678899999987654
No 83
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.30 E-value=4.5e-06 Score=43.40 Aligned_cols=50 Identities=12% Similarity=0.284 Sum_probs=41.4
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHh
Q psy164 31 TIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGM 80 (161)
Q Consensus 31 ~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 80 (161)
+++.+|++.+|+.+++.+++..+..+|..+|.+++|.+..+||..++..+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 47889999999999999999999999999999999999999999988754
No 84
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.29 E-value=1.3e-06 Score=38.94 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=18.2
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHH
Q psy164 94 LLKAFRTLDKDNKSYLDKEYLTKLM 118 (161)
Q Consensus 94 ~~~~f~~~D~~~~g~I~~~el~~~l 118 (161)
++.+|+.+|.|++|.|+.+||++++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 3567777888888888888877653
No 85
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.26 E-value=5.4e-06 Score=43.11 Aligned_cols=48 Identities=13% Similarity=0.164 Sum_probs=40.0
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHhhccCCCCCceeHHHHHHHHhc
Q psy164 109 LDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIMK 156 (161)
Q Consensus 109 I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 156 (161)
++..|++.+|+.++..+++..+..+++.+|.+++|.+.-+||..+.+.
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999988753
No 86
>KOG0046|consensus
Probab=98.13 E-value=1.8e-05 Score=59.92 Aligned_cols=75 Identities=13% Similarity=0.226 Sum_probs=66.5
Q ss_pred ccCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCC---CHHHHHHHHHHhCCCCCCccchhhHHHHHHHhh
Q psy164 6 EVHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCP---TEADIQEIIVTCENPEFGNIALSRFLPIVSGMI 81 (161)
Q Consensus 6 ~~~l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~---~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~ 81 (161)
..++|++++..+++.|...| +++|+++..++..++...+... ..++++.++...+.+.+|.|+|++|+.++....
T Consensus 10 ~~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~ 87 (627)
T KOG0046|consen 10 QSQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLK 87 (627)
T ss_pred cccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhh
Confidence 46899999999999999999 8999999999999999887644 468899999999999999999999999766553
No 87
>KOG0038|consensus
Probab=98.12 E-value=1.8e-05 Score=50.21 Aligned_cols=100 Identities=11% Similarity=0.165 Sum_probs=75.0
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCCCCCCcHHH----
Q psy164 19 DAFDIFDHAGNKTIDCREVGTVLRALGG-CPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQPASAEE---- 93 (161)
Q Consensus 19 ~~f~~~D~~~~g~i~~~el~~~l~~l~~-~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~---- 93 (161)
++...|..+|.|.++.++|..++.-+.- .|.+-.+.-.|..+|-++++.|.-.+....+..+.+.. -..++
T Consensus 75 ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~e----Ls~eEv~~i 150 (189)
T KOG0038|consen 75 RICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDE----LSDEEVELI 150 (189)
T ss_pred HHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhcc----CCHHHHHHH
Confidence 3456677899999999999999876643 33333445567888989999999999988888776552 33333
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHcC
Q psy164 94 LLKAFRTLDKDNKSYLDKEYLTKLMIEEG 122 (161)
Q Consensus 94 ~~~~f~~~D~~~~g~I~~~el~~~l~~~g 122 (161)
..++....|.+|+|.++..+|.+++.+..
T Consensus 151 ~ekvieEAD~DgDgkl~~~eFe~~i~raP 179 (189)
T KOG0038|consen 151 CEKVIEEADLDGDGKLSFAEFEHVILRAP 179 (189)
T ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhCc
Confidence 44556677999999999999999987643
No 88
>KOG1029|consensus
Probab=98.11 E-value=0.00015 Score=57.55 Aligned_cols=144 Identities=13% Similarity=0.186 Sum_probs=104.0
Q ss_pred cCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhc---
Q psy164 7 VHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISE--- 83 (161)
Q Consensus 7 ~~l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~--- 83 (161)
=.+|.++...--.-|..+- .+.|+|+...-+.++-.-|++ ...+..++...|.+.+|+.+..||.-.+....-.
T Consensus 8 WavT~~Er~K~~~qF~~Lk-p~~gfitg~qArnfflqS~LP--~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkLqG 84 (1118)
T KOG1029|consen 8 WAVTDEERQKHDAQFGQLK-PGQGFITGDQARNFFLQSGLP--TPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKLQG 84 (1118)
T ss_pred cccchHHHHHHHHHHhccC-CCCCccchHhhhhhHHhcCCC--hHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHhcC
Confidence 3466666665555555553 357788888777777655544 3456667777777778888888877665443100
Q ss_pred ----------------------------------------------------------------------C---------
Q psy164 84 ----------------------------------------------------------------------N--------- 84 (161)
Q Consensus 84 ----------------------------------------------------------------------~--------- 84 (161)
.
T Consensus 85 ~~lP~~LPPsll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~sp 164 (1118)
T KOG1029|consen 85 IQLPPVLPPSLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNSP 164 (1118)
T ss_pred CcCCCCCChHHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCC
Confidence 0
Q ss_pred ---------C--------------CCCCcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhccCCC
Q psy164 85 ---------R--------------FQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQD 141 (161)
Q Consensus 85 ---------~--------------~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~ 141 (161)
. .+....-.++..|+.+|+..+|++|-..-+.+|...+ ++...+..++...|.|+
T Consensus 165 l~~~ss~se~~~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~ 242 (1118)
T KOG1029|consen 165 LPHDSSVSEGRPSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDG 242 (1118)
T ss_pred CCCCcchhhcCccchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCC
Confidence 0 0011234688899999999999999999999998877 77778999999999999
Q ss_pred CCceeHHHHHHHHh
Q psy164 142 TGRIPYEYYINHIM 155 (161)
Q Consensus 142 ~g~i~~~eF~~~l~ 155 (161)
||+++-+||+-.|-
T Consensus 243 DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 243 DGKLSADEFILAMH 256 (1118)
T ss_pred CCcccHHHHHHHHH
Confidence 99999999987664
No 89
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.07 E-value=7e-06 Score=36.53 Aligned_cols=25 Identities=32% Similarity=0.595 Sum_probs=20.1
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHH
Q psy164 17 IADAFDIFDHAGNKTIDCREVGTVL 41 (161)
Q Consensus 17 l~~~f~~~D~~~~g~i~~~el~~~l 41 (161)
|+++|..+|.+++|.|+.+|+..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678888888888888888888753
No 90
>KOG0040|consensus
Probab=97.93 E-value=3.1e-05 Score=65.05 Aligned_cols=68 Identities=19% Similarity=0.381 Sum_probs=60.9
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCC--HH-----HHHHHHhhccCCCCCceeHHHHHHHHhccc
Q psy164 91 AEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFT--PE-----EIDEMMSTAVDQDTGRIPYEYYINHIMKSE 158 (161)
Q Consensus 91 ~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~--~~-----~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~ 158 (161)
..++..+|..||++.+|.++..+|+.+|+.+|+.++ ++ ++.+++...|.+.+|.|+..+|+.+|.++.
T Consensus 2252 L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~E 2326 (2399)
T KOG0040|consen 2252 LKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKE 2326 (2399)
T ss_pred HHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcc
Confidence 457888999999999999999999999999997662 33 799999999999999999999999998763
No 91
>KOG2562|consensus
Probab=97.92 E-value=0.00025 Score=53.18 Aligned_cols=137 Identities=21% Similarity=0.286 Sum_probs=79.9
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHhCC--CC-------------CHHHHHHHHHHhCCCCCCccchhhHHH-----H
Q psy164 17 IADAFDIFDHAGNKTIDCREVGTVLRALGG--CP-------------TEADIQEIIVTCENPEFGNIALSRFLP-----I 76 (161)
Q Consensus 17 l~~~f~~~D~~~~g~i~~~el~~~l~~l~~--~~-------------~~~~~~~l~~~~d~~~~~~i~~~ef~~-----~ 76 (161)
+.+++..++..+.++|...+|...|..+-. ++ ..-.++++|-.++....|.|+..+... .
T Consensus 176 ~~~~v~~l~~~~~~yl~q~df~~~Lqeli~Thpl~~l~~~pEf~~~Y~~tvi~rIFy~~nrs~tG~iti~el~~snll~~ 255 (493)
T KOG2562|consen 176 LEQFVNLLIQAGCSYLRQDDFKPYLQELIATHPLEFLDEEPEFQERYAETVIQRIFYYLNRSRTGRITIQELLRSNLLDA 255 (493)
T ss_pred HHHHHHHHhccCccceeccccHHHHHHHHhcCCchhhccChhHHHHHHHHHhhhhheeeCCccCCceeHHHHHHhHHHHH
Confidence 344455566666666666665555554311 10 011234556666666788777776443 2
Q ss_pred HHHhhhcCC----CCCCcHHHHHHH---HHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHh----hccCCCCCce
Q psy164 77 VSGMISENR----FQPASAEELLKA---FRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMS----TAVDQDTGRI 145 (161)
Q Consensus 77 ~~~~~~~~~----~~~~~~~~~~~~---f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~----~~d~~~~g~i 145 (161)
+........ ...-..+-...+ |-.+|+|++|.|+.++|+.... ..++..-++.++. ..-...+|++
T Consensus 256 l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d---~tlt~~ivdRIFs~v~r~~~~~~eGrm 332 (493)
T KOG2562|consen 256 LLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGD---HTLTERIVDRIFSQVPRGFTVKVEGRM 332 (493)
T ss_pred HHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhc---cchhhHHHHHHHhhccccceeeecCcc
Confidence 222211110 000112333334 7777999999999999987653 3455666777777 3445678999
Q ss_pred eHHHHHHHHhc
Q psy164 146 PYEYYINHIMK 156 (161)
Q Consensus 146 ~~~eF~~~l~~ 156 (161)
+|++|+-++..
T Consensus 333 dykdFv~FilA 343 (493)
T KOG2562|consen 333 DYKDFVDFILA 343 (493)
T ss_pred cHHHHHHHHHH
Confidence 99999988753
No 92
>KOG0377|consensus
Probab=97.91 E-value=6.4e-05 Score=56.04 Aligned_cols=65 Identities=23% Similarity=0.358 Sum_probs=57.8
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHh----CCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHh
Q psy164 16 KIADAFDIFDHAGNKTIDCREVGTVLRAL----GGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGM 80 (161)
Q Consensus 16 ~l~~~f~~~D~~~~g~i~~~el~~~l~~l----~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 80 (161)
.|..+|+..|.|++|.|+.+||+.+.+-+ +..++..++.++-..+|.+++|.|++.||+..+...
T Consensus 548 ~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 548 SLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred hHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 57789999999999999999999988755 457788999999999999999999999999988764
No 93
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.89 E-value=5.5e-06 Score=51.23 Aligned_cols=62 Identities=16% Similarity=0.176 Sum_probs=46.7
Q ss_pred CcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhccCCCCCceeHHHHHH
Q psy164 89 ASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRIPYEYYIN 152 (161)
Q Consensus 89 ~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 152 (161)
.....+.-.|..+|.+++|.++..|++.+...+ ...+.-+..++...|.|+||.||..||..
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 445778889999999999999999998877655 24455688899999999999999999975
No 94
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.87 E-value=5.9e-05 Score=56.36 Aligned_cols=54 Identities=13% Similarity=0.143 Sum_probs=47.5
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHh
Q psy164 14 EKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGM 80 (161)
Q Consensus 14 ~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 80 (161)
...+..+|..+|.+++|.|+.+||.. +..+|..+|.+++|.|++++|..++...
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 45678899999999999999999942 4678999999999999999999988864
No 95
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.84 E-value=7.2e-05 Score=43.64 Aligned_cols=64 Identities=22% Similarity=0.440 Sum_probs=54.0
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHcC-C-CCCHHHHHHHHhhccCC----CCCceeHHHHHHHHhcc
Q psy164 93 ELLKAFRTLDKDNKSYLDKEYLTKLMIEEG-E-PFTPEEIDEMMSTAVDQ----DTGRIPYEYYINHIMKS 157 (161)
Q Consensus 93 ~~~~~f~~~D~~~~g~I~~~el~~~l~~~g-~-~~~~~~~~~~~~~~d~~----~~g~i~~~eF~~~l~~~ 157 (161)
++..+|+.+-. +.++||.++|..+|...+ . ..+.+++..++..+..+ ..+.+++++|..+|.+.
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 47889999965 789999999999998864 3 46899999999998654 47899999999999875
No 96
>KOG0046|consensus
Probab=97.67 E-value=0.00022 Score=54.24 Aligned_cols=65 Identities=28% Similarity=0.479 Sum_probs=56.5
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCC---CCHHHHHHHHhhccCCCCCceeHHHHHHHHhc
Q psy164 91 AEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEP---FTPEEIDEMMSTAVDQDTGRIPYEYYINHIMK 156 (161)
Q Consensus 91 ~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~---~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 156 (161)
..+++..|...| +++|+|+..++..++...+.. ...+++..++...+.|.+|+|++++|+..+.+
T Consensus 18 l~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 18 LRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred HHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 357888999999 999999999999999987643 45789999999999999999999999996543
No 97
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.58 E-value=2.3e-05 Score=48.44 Aligned_cols=63 Identities=19% Similarity=0.325 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHH
Q psy164 12 DFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPI 76 (161)
Q Consensus 12 ~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~ 76 (161)
.....+.=.|..+|.+++|.|+..|+..+...+ .+.+.=+..++..+|.+++|.|++.||..+
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 344556667999999999999999999876644 445555788999999999999999999753
No 98
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.42 E-value=0.00026 Score=31.63 Aligned_cols=27 Identities=37% Similarity=0.521 Sum_probs=18.0
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHH
Q psy164 94 LLKAFRTLDKDNKSYLDKEYLTKLMIE 120 (161)
Q Consensus 94 ~~~~f~~~D~~~~g~I~~~el~~~l~~ 120 (161)
++.+|+.+|.+++|.|+..+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 455677777777777777777666653
No 99
>KOG0035|consensus
Probab=97.38 E-value=0.0038 Score=50.87 Aligned_cols=106 Identities=16% Similarity=0.104 Sum_probs=83.4
Q ss_pred ccCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCH-----HHHHHHHHHhCCCCCCccchhhHHHHHHHh
Q psy164 6 EVHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTE-----ADIQEIIVTCENPEFGNIALSRFLPIVSGM 80 (161)
Q Consensus 6 ~~~l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~-----~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 80 (161)
....++.+..+|+..|+.+++...|.++..++..+|-.+|...-. .++..++...+....|.|+|.+|...+...
T Consensus 738 sk~~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~ 817 (890)
T KOG0035|consen 738 SKGTSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLERE 817 (890)
T ss_pred ccchhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhh
Confidence 456788999999999999999999999999999999999987654 233445555555556899999999998875
Q ss_pred hhcCCCCCCcHHHHHHHHHhhCCCCCCcccHHHHHH
Q psy164 81 ISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTK 116 (161)
Q Consensus 81 ~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~ 116 (161)
... .+....+..+|+.+-++.. +|..+||..
T Consensus 818 ~e~----l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 818 YED----LDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred hhh----hcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 443 2556778888888876654 788888887
No 100
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=97.31 E-value=0.0065 Score=40.04 Aligned_cols=103 Identities=18% Similarity=0.172 Sum_probs=73.9
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCC----------------------------------------------
Q psy164 15 KKIADAFDIFDHAGNKTIDCREVGTVLRALGGCP---------------------------------------------- 48 (161)
Q Consensus 15 ~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~---------------------------------------------- 48 (161)
..|++-..-||+|++|.|.+-|-..-++.+|+.+
T Consensus 7 T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~ 86 (174)
T PF05042_consen 7 TVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGA 86 (174)
T ss_pred cHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccc
Confidence 4567777889999999999999877778777543
Q ss_pred -------CHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCCCCC--CcHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q psy164 49 -------TEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQP--ASAEELLKAFRTLDKDNKSYLDKEYLTKLM 118 (161)
Q Consensus 49 -------~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~--~~~~~~~~~f~~~D~~~~g~I~~~el~~~l 118 (161)
.++.++.+|..++....+.+++.|...++..........- ...-+...+|.+. .+.+|.+..++++.+.
T Consensus 87 YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 87 YDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVY 164 (174)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhc
Confidence 2456778888888777788999999888877533211000 1134566666666 5678999999988765
No 101
>KOG4065|consensus
Probab=97.23 E-value=0.0014 Score=40.10 Aligned_cols=62 Identities=21% Similarity=0.371 Sum_probs=46.2
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHc------CC---C-CCHHHHHHHHh----hccCCCCCceeHHHHHHH
Q psy164 92 EELLKAFRTLDKDNKSYLDKEYLTKLMIEE------GE---P-FTPEEIDEMMS----TAVDQDTGRIPYEYYINH 153 (161)
Q Consensus 92 ~~~~~~f~~~D~~~~g~I~~~el~~~l~~~------g~---~-~~~~~~~~~~~----~~d~~~~g~i~~~eF~~~ 153 (161)
+.--.-|++.|.|++|.++--|+..++.-. |. + .++.++..++. .-|.|+||.|+|-||++.
T Consensus 67 qlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 67 QLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred HHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 333456889999999999999998888643 22 2 45666655554 457899999999999875
No 102
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.19 E-value=0.00059 Score=30.36 Aligned_cols=27 Identities=37% Similarity=0.724 Sum_probs=20.2
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHH
Q psy164 17 IADAFDIFDHAGNKTIDCREVGTVLRA 43 (161)
Q Consensus 17 l~~~f~~~D~~~~g~i~~~el~~~l~~ 43 (161)
++.+|..+|.+++|.|+..+|..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 566777788877788888888777654
No 103
>KOG1265|consensus
Probab=97.11 E-value=0.016 Score=47.27 Aligned_cols=122 Identities=17% Similarity=0.361 Sum_probs=89.0
Q ss_pred CCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCC-------CCccchhhHHHHHHHhhhcCCCCCCcHHHHHHH
Q psy164 25 DHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPE-------FGNIALSRFLPIVSGMISENRFQPASAEELLKA 97 (161)
Q Consensus 25 D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~-------~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~ 97 (161)
..+..|+|....+..++.+- -.+..++..+..+.... -..++++.|..++..+... .++..+
T Consensus 158 qvn~~grip~knI~k~F~~~---k~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcpR--------~eie~i 226 (1189)
T KOG1265|consen 158 QVNFEGRIPVKNIIKTFSAD---KKEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCPR--------PEIEEI 226 (1189)
T ss_pred cccccccccHHHHHHHhhcC---CchhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCCc--------hhHHHH
Confidence 34567888887777665422 22244555444443221 2246678888888877544 789999
Q ss_pred HHhhCCCCCCcccHHHHHHHHHHcC----------CCCCHHHHHHHHhhccCCC----CCceeHHHHHHHHhcc
Q psy164 98 FRTLDKDNKSYLDKEYLTKLMIEEG----------EPFTPEEIDEMMSTAVDQD----TGRIPYEYYINHIMKS 157 (161)
Q Consensus 98 f~~~D~~~~g~I~~~el~~~l~~~g----------~~~~~~~~~~~~~~~d~~~----~g~i~~~eF~~~l~~~ 157 (161)
|..+-.++..++|.++|..+|..-. ....+..+..+++.+..+. .|.++-+.|++++++.
T Consensus 227 F~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~gd 300 (1189)
T KOG1265|consen 227 FRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMGD 300 (1189)
T ss_pred HHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhCC
Confidence 9999888889999999999998642 3467888999999987664 7899999999999983
No 104
>KOG4666|consensus
Probab=96.91 E-value=0.0049 Score=44.55 Aligned_cols=104 Identities=19% Similarity=0.180 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCCCCCCcH
Q psy164 13 FEKKIADAFDIFDHAGNKTIDCREVGTVLRAL-GGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQPASA 91 (161)
Q Consensus 13 ~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l-~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~ 91 (161)
....+...|..||...+|.++..+-...+.-+ |-+.+...++-.+..|+-..+|.+.-.+|.-++..... -..
T Consensus 257 vsd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lg------v~~ 330 (412)
T KOG4666|consen 257 VSDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLG------VEV 330 (412)
T ss_pred hhhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcC------cce
Confidence 34678899999999999999988866666543 55677888999999999999998888777666655432 222
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHcC
Q psy164 92 EELLKAFRTLDKDNKSYLDKEYLTKLMIEEG 122 (161)
Q Consensus 92 ~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g 122 (161)
-.+-..|+..+...+|.|+.++|+++....+
T Consensus 331 l~v~~lf~~i~q~d~~ki~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 331 LRVPVLFPSIEQKDDPKIYASNFRKFAATEP 361 (412)
T ss_pred eeccccchhhhcccCcceeHHHHHHHHHhCc
Confidence 3566789999999999999999999987755
No 105
>KOG0042|consensus
Probab=96.83 E-value=0.0047 Score=47.88 Aligned_cols=79 Identities=16% Similarity=0.167 Sum_probs=71.2
Q ss_pred cccCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhc
Q psy164 5 EEVHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISE 83 (161)
Q Consensus 5 ~~~~l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~ 83 (161)
.+..+++++....+..|..+|.++.|+++..++...|+..+..++...+.+++...+..-+|.+...+|.+++......
T Consensus 583 ~~i~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~g 661 (680)
T KOG0042|consen 583 IPIKLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKNG 661 (680)
T ss_pred cccccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhcC
Confidence 3567999999999999999999999999999999999999989999999999999887779999999999988876543
No 106
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.70 E-value=0.0055 Score=35.58 Aligned_cols=64 Identities=20% Similarity=0.322 Sum_probs=51.5
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHh-CC-CCCHHHHHHHHHHhCCC----CCCccchhhHHHHHHHh
Q psy164 16 KIADAFDIFDHAGNKTIDCREVGTVLRAL-GG-CPTEADIQEIIVTCENP----EFGNIALSRFLPIVSGM 80 (161)
Q Consensus 16 ~l~~~f~~~D~~~~g~i~~~el~~~l~~l-~~-~~~~~~~~~l~~~~d~~----~~~~i~~~ef~~~~~~~ 80 (161)
++..+|..+.. +.+.|+.++|..+|+.- +- ..+..++..++..+..+ ..+.+++..|..++...
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 47889999966 78999999999999765 33 46789999999888544 36889999999988643
No 107
>KOG1955|consensus
Probab=96.55 E-value=0.0096 Score=45.49 Aligned_cols=76 Identities=12% Similarity=0.115 Sum_probs=66.4
Q ss_pred ccCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhc
Q psy164 6 EVHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISE 83 (161)
Q Consensus 6 ~~~l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~ 83 (161)
.-.+|++|.+.+..-|+....|-.|.|+..--+.++.+-. ++-.++..++...|-+.+|.+++.||+..+.....+
T Consensus 222 pw~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVVaR 297 (737)
T KOG1955|consen 222 PWQITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFHLVVAR 297 (737)
T ss_pred ccccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHhheeec
Confidence 3469999999999999999999999999999998887654 445789999999999999999999999999876544
No 108
>KOG4065|consensus
Probab=96.47 E-value=0.032 Score=34.28 Aligned_cols=69 Identities=20% Similarity=0.216 Sum_probs=49.6
Q ss_pred ccCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh------CC---C-CCHHHHHHHHHH----hCCCCCCccchh
Q psy164 6 EVHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRAL------GG---C-PTEADIQEIIVT----CENPEFGNIALS 71 (161)
Q Consensus 6 ~~~l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l------~~---~-~~~~~~~~l~~~----~d~~~~~~i~~~ 71 (161)
..++||+|++- .-|...|-++++.|+.-|+..++... |- + +++.++..++.. -|.+++|.|+|-
T Consensus 60 ~a~mtpeqlqf--HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYg 137 (144)
T KOG4065|consen 60 VAKMTPEQLQF--HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYG 137 (144)
T ss_pred hhhCCHHHHhh--hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHH
Confidence 45688887752 45788999999999999998888633 22 1 245566665544 456679999999
Q ss_pred hHHHH
Q psy164 72 RFLPI 76 (161)
Q Consensus 72 ef~~~ 76 (161)
||+..
T Consensus 138 EflK~ 142 (144)
T KOG4065|consen 138 EFLKR 142 (144)
T ss_pred HHHhh
Confidence 99863
No 109
>PLN02952 phosphoinositide phospholipase C
Probab=96.47 E-value=0.046 Score=43.34 Aligned_cols=89 Identities=7% Similarity=0.181 Sum_probs=64.4
Q ss_pred CCCccchhhHHHHHHHhhhcCCCCCCcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCC--CCCHHHHHHHHhhcc---
Q psy164 64 EFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGE--PFTPEEIDEMMSTAV--- 138 (161)
Q Consensus 64 ~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~--~~~~~~~~~~~~~~d--- 138 (161)
..|.++|.+|..+...+.... .....++..+|..+-. +.+.++.++|..+|...+. ..+.+.+..++..+-
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~---~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~ 88 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITE---AEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRR 88 (599)
T ss_pred cCCCcCHHHHHHHHHHhcccc---CCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhc
Confidence 357999999988777653211 1356899999999964 4478999999999999653 366677777655431
Q ss_pred ----CCCCCceeHHHHHHHHhc
Q psy164 139 ----DQDTGRIPYEYYINHIMK 156 (161)
Q Consensus 139 ----~~~~g~i~~~eF~~~l~~ 156 (161)
....+.++++.|..+|..
T Consensus 89 ~~~~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 89 HHVTRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred cccccccccCcCHHHHHHHHcC
Confidence 122346899999999985
No 110
>KOG1955|consensus
Probab=96.33 E-value=0.01 Score=45.37 Aligned_cols=63 Identities=13% Similarity=0.255 Sum_probs=56.2
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhccCCCCCceeHHHHHHHHh
Q psy164 91 AEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIM 155 (161)
Q Consensus 91 ~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 155 (161)
.+.+-.-|+-...|-.|+|+-.--+.++.+-. ++-+|+..|++..|.+.||.+++.||+..|.
T Consensus 230 ReYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 230 REYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 46677889999999999999999998888766 7778999999999999999999999999874
No 111
>KOG0042|consensus
Probab=96.15 E-value=0.011 Score=45.90 Aligned_cols=65 Identities=17% Similarity=0.245 Sum_probs=59.7
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhccCCCCCceeHHHHHHHHhc
Q psy164 92 EELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIMK 156 (161)
Q Consensus 92 ~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 156 (161)
...+.-|..+|.++.|+++..+..++|+..+.+.+.+.+++++..++.+.+|.++..+|...++.
T Consensus 593 ~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 593 LRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHH
Confidence 45566789999999999999999999999998899999999999999999999999999998875
No 112
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=96.09 E-value=0.0052 Score=34.35 Aligned_cols=58 Identities=29% Similarity=0.429 Sum_probs=40.3
Q ss_pred CcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhccCC-------CCCceeHHHHHHHH
Q psy164 89 ASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQ-------DTGRIPYEYYINHI 154 (161)
Q Consensus 89 ~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~-------~~g~i~~~eF~~~l 154 (161)
...+.+..+|+.+ .++.++||.++|++.|..- +++-++..+..- ..|.++|..|++.|
T Consensus 3 ~s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~pe-------~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~l 67 (69)
T PF08726_consen 3 DSAEQVEEAFRAL-AGGKPYVTEEDLRRSLTPE-------QAEYCISRMPPYEGPDGDAIPGAYDYESFTNSL 67 (69)
T ss_dssp STCHHHHHHHHHH-CTSSSCEEHHHHHHHS-CC-------CHHHHHCCSEC--SSS----TTEEECHHHHCCC
T ss_pred CCHHHHHHHHHHH-HcCCCcccHHHHHHHcCcH-------HHHHHHHHCcccCCCCcCCCCCCcCHHHHHHHH
Confidence 4557899999999 6788999999999886443 244444444321 23779999988654
No 113
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.88 E-value=0.1 Score=34.14 Aligned_cols=66 Identities=15% Similarity=0.296 Sum_probs=49.6
Q ss_pred HHHHHhh---CCCCCCcccHHHHHHHHHHhCC---CCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhc
Q psy164 18 ADAFDIF---DHAGNKTIDCREVGTVLRALGG---CPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISE 83 (161)
Q Consensus 18 ~~~f~~~---D~~~~g~i~~~el~~~l~~l~~---~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~ 83 (161)
+.+|..| ...+...|+...|..+++..++ .++..++..+|..+.......|+|++|+.++..+...
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~~ 73 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAEK 73 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHH
Confidence 4455555 4455678999999999998766 5788999999999876666779999999999876443
No 114
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=95.85 E-value=0.17 Score=29.95 Aligned_cols=66 Identities=15% Similarity=0.317 Sum_probs=42.1
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHc-------CCC----CCHHHHHHHHhhccCCCCCceeHHHHHHHHhccccC
Q psy164 92 EELLKAFRTLDKDNKSYLDKEYLTKLMIEE-------GEP----FTPEEIDEMMSTAVDQDTGRIPYEYYINHIMKSEER 160 (161)
Q Consensus 92 ~~~~~~f~~~D~~~~g~I~~~el~~~l~~~-------g~~----~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~~ 160 (161)
++++.+|+.+ .|++|.++...|..+|... |+. -.+.-+..++... .....|+-++|+.+|+..|-.
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ePq~ 79 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSEPQS 79 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT--TT
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhCCCe
Confidence 6789999999 5789999999998888652 321 1445566666665 356789999999999987654
No 115
>KOG4578|consensus
Probab=95.64 E-value=0.017 Score=41.88 Aligned_cols=65 Identities=9% Similarity=0.158 Sum_probs=50.7
Q ss_pred HHHHHHHhhCCCCCCcccHHHH---HHHHHHcCCCCCHHHHHHHHhhccCCCCCceeHHHHHHHHhcccc
Q psy164 93 ELLKAFRTLDKDNKSYLDKEYL---TKLMIEEGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIMKSEE 159 (161)
Q Consensus 93 ~~~~~f~~~D~~~~g~I~~~el---~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~ 159 (161)
.++--|..+|+++++.|.+.|. +.++.... -...-...+++..|.|+|.+|++.|+...|-..++
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s--~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~~ 401 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKS--KPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEKE 401 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhc--cHHHHhhhcchhcccCCCceecHHHHhhhhccccc
Confidence 5667799999999999999985 55555433 23344677899999999999999999998865443
No 116
>KOG0998|consensus
Probab=95.56 E-value=0.027 Score=46.58 Aligned_cols=143 Identities=15% Similarity=0.192 Sum_probs=109.5
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcC---
Q psy164 8 HITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISEN--- 84 (161)
Q Consensus 8 ~l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~--- 84 (161)
.+++.+..++..+|....+. +|.++....+.+|..-++ +...+-+++...|.+.+|.+++.+|...+.......
T Consensus 122 ~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s~L--p~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l~~~ 198 (847)
T KOG0998|consen 122 AITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNSKL--PSDVLGRIWELSDIDKDGNLDRDEFAVAMHLINDLLNGN 198 (847)
T ss_pred CCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcCCC--ChhhhccccccccccccCCCChhhhhhhhhHHHHHhhcc
Confidence 47788888888889888775 888888888887765443 344556777888888899999999987665432110
Q ss_pred -----------------------------------------------------------------------------CCC
Q psy164 85 -----------------------------------------------------------------------------RFQ 87 (161)
Q Consensus 85 -----------------------------------------------------------------------------~~~ 87 (161)
...
T Consensus 199 ~~p~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~~~vs 278 (847)
T KOG0998|consen 199 SEPVPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWSPKVS 278 (847)
T ss_pred cCCCCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccccCcccC
Confidence 011
Q ss_pred CCcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhccCCCCCceeHHHHHHHHh
Q psy164 88 PASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIM 155 (161)
Q Consensus 88 ~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 155 (161)
+.....+..+|...|.+.+|.|+-.+....+...| ++...+...+...|..+.|.+++.+|.-.|-
T Consensus 279 p~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g--l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~ 344 (847)
T KOG0998|consen 279 PSDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFG--LSKPRLAHVWLLADTQNTGTLSKDEFALAMH 344 (847)
T ss_pred hHHHHHHHHHHHhccccCCCcccccccccccccCC--CChhhhhhhhhhcchhccCcccccccchhhh
Confidence 11234667789999999999999999999999977 7777899999999999999999998876553
No 117
>KOG3555|consensus
Probab=95.42 E-value=0.069 Score=39.13 Aligned_cols=108 Identities=7% Similarity=0.031 Sum_probs=79.4
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHhC---CCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCCCCCCcHH
Q psy164 16 KIADAFDIFDHAGNKTIDCREVGTVLRALG---GCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQPASAE 92 (161)
Q Consensus 16 ~l~~~f~~~D~~~~g~i~~~el~~~l~~l~---~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 92 (161)
+|+..|..+-.+.++......+...-..+. +++-..++.-||...|.+.++.++-.|...+... ..+.
T Consensus 212 RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ld---------knE~ 282 (434)
T KOG3555|consen 212 RLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELD---------KNEA 282 (434)
T ss_pred HHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhcc---------Cchh
Confidence 678888888877777777766666544332 2334577888999999999999999987776653 5667
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHH
Q psy164 93 ELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEM 133 (161)
Q Consensus 93 ~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~ 133 (161)
.++-.|...|...+|.|+..|.-..+..-+ .+-..++..+
T Consensus 283 CikpFfnsCD~~kDg~iS~~EWC~CF~k~~-~pc~~e~~ri 322 (434)
T KOG3555|consen 283 CIKPFFNSCDTYKDGSISTNEWCYCFQKSD-PPCQAELCRI 322 (434)
T ss_pred HHHHHHhhhcccccCccccchhhhhhccCC-CccccHHHHH
Confidence 889999999999999999999887776655 3434444443
No 118
>KOG0035|consensus
Probab=95.41 E-value=0.055 Score=44.46 Aligned_cols=70 Identities=14% Similarity=0.093 Sum_probs=57.8
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCH-----HHHHHHHhhccCCCCCceeHHHHHHHHhccccC
Q psy164 91 AEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTP-----EEIDEMMSTAVDQDTGRIPYEYYINHIMKSEER 160 (161)
Q Consensus 91 ~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~-----~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~~ 160 (161)
..+++..|+.++....|..+++++...+..+|...-+ .++..++...|.+..|.+++.+|...|.+-.+.
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~ 820 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYED 820 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhh
Confidence 4688999999999999999999999999999987764 234445555666677999999999999987664
No 119
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.41 E-value=0.11 Score=34.08 Aligned_cols=63 Identities=19% Similarity=0.408 Sum_probs=47.8
Q ss_pred HHHHHhh---CCCCCCcccHHHHHHHHHHcC---CCCCHHHHHHHHhhccCCCCCceeHHHHHHHHhcc
Q psy164 95 LKAFRTL---DKDNKSYLDKEYLTKLMIEEG---EPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIMKS 157 (161)
Q Consensus 95 ~~~f~~~---D~~~~g~I~~~el~~~l~~~g---~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 157 (161)
+.+|..| -..+...++...|..+|+..+ ..++...++.++..+-..+...|+|++|..+|...
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 4455555 445677899999999999965 45899999999999766666789999999998754
No 120
>KOG2243|consensus
Probab=95.37 E-value=0.036 Score=47.69 Aligned_cols=58 Identities=26% Similarity=0.435 Sum_probs=50.6
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhccCCCCCceeHHHHHHHHh
Q psy164 97 AFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIM 155 (161)
Q Consensus 97 ~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 155 (161)
.|+.||+|+.|.|+..+|..++.... .-+..+++-++.-+..|.+...+|++|+.-+.
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~k-~ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGHK-HYTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhccc-cchhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 47889999999999999999998743 46788899999999899999999999998654
No 121
>KOG0169|consensus
Probab=95.11 E-value=0.37 Score=39.03 Aligned_cols=97 Identities=13% Similarity=0.185 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCCCCCCcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHH
Q psy164 50 EADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEE 129 (161)
Q Consensus 50 ~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~ 129 (161)
...+..++...|.+.+|.+++.+-..++..+... -....++..|+..+..++|.+...++..+........ +
T Consensus 135 ~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~-----l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---e 206 (746)
T KOG0169|consen 135 EHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQ-----LSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---E 206 (746)
T ss_pred HHHHHHHHHHHccccccccchhhHHHHHHHHHHh-----hhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---h
Confidence 4556788899999999999999988887766433 3346777888888888999999999999888776433 5
Q ss_pred HHHHHhhccCCCCCceeHHHHHHHHh
Q psy164 130 IDEMMSTAVDQDTGRIPYEYYINHIM 155 (161)
Q Consensus 130 ~~~~~~~~d~~~~g~i~~~eF~~~l~ 155 (161)
+..++..+..+ .+.++.++++.++.
T Consensus 207 v~~~f~~~s~~-~~~ls~~~L~~Fl~ 231 (746)
T KOG0169|consen 207 VYFLFVQYSHG-KEYLSTDDLLRFLE 231 (746)
T ss_pred HHHHHHHHhCC-CCccCHHHHHHHHH
Confidence 66666665433 56666666666554
No 122
>KOG3555|consensus
Probab=94.31 E-value=0.1 Score=38.32 Aligned_cols=64 Identities=17% Similarity=0.212 Sum_probs=53.8
Q ss_pred CcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhccCCCCCceeHHHHHHHHhc
Q psy164 89 ASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIMK 156 (161)
Q Consensus 89 ~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 156 (161)
.-...+.-+|..+|.+.+|.++..||+.+-.. -.+.-+..+|...|...||.||-.||...+.+
T Consensus 247 ~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ld----knE~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 247 ICKDSLGWMFNKLDTNYDLLLDQSELRAIELD----KNEACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred chhhhhhhhhhccccccccccCHHHhhhhhcc----CchhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 44678999999999999999999999876532 33445788999999999999999999988765
No 123
>KOG0998|consensus
Probab=94.30 E-value=0.069 Score=44.30 Aligned_cols=145 Identities=11% Similarity=0.168 Sum_probs=107.5
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhc-----
Q psy164 9 ITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISE----- 83 (161)
Q Consensus 9 l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~----- 83 (161)
+.+.....+...|..+|..+.|+|+..+...++..-|+ ....+-.++...+..+.|.++...|...++.....
T Consensus 5 ~~~~~q~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~L--~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~~~~ 82 (847)
T KOG0998|consen 5 LSPPGQPLFDQYFKSADPQGDGRITGAEAVAFLSKSGL--PDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQAQSGRE 82 (847)
T ss_pred CCCCccchHHHhhhccCcccCCcccHHHhhhhhhcccc--chhhhhccccccccccCCccccccccccchHhhhhhcccC
Confidence 33444466788899999999999999999988876654 35566677777877777889988888877654211
Q ss_pred --------------------------CC------------CCCCcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCC
Q psy164 84 --------------------------NR------------FQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPF 125 (161)
Q Consensus 84 --------------------------~~------------~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~ 125 (161)
+. ........+..+|+-+.+. .|.++-...+-++..-+ +
T Consensus 83 ~~~~~~~~~~~~pp~~~~~~~~~~~~~~~~~~s~~~~~p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s~--L 159 (847)
T KOG0998|consen 83 LSAKKVLPASAVPPPPKISHDTSPPSRPSSSTSAAPFVPAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNSK--L 159 (847)
T ss_pred cCccccccccCCCCCCccCccCCCcccCCCCCCCcccCCCCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcCC--C
Confidence 00 0011124566678888654 89999999998887766 6
Q ss_pred CHHHHHHHHhhccCCCCCceeHHHHHHHHhccc
Q psy164 126 TPEEIDEMMSTAVDQDTGRIPYEYYINHIMKSE 158 (161)
Q Consensus 126 ~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~ 158 (161)
+...+..++...|.+.+|.++..+|.-.|...+
T Consensus 160 p~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~ 192 (847)
T KOG0998|consen 160 PSDVLGRIWELSDIDKDGNLDRDEFAVAMHLIN 192 (847)
T ss_pred ChhhhccccccccccccCCCChhhhhhhhhHHH
Confidence 666788889999999999999999998876544
No 124
>KOG4347|consensus
Probab=94.08 E-value=0.12 Score=40.89 Aligned_cols=104 Identities=17% Similarity=0.157 Sum_probs=74.0
Q ss_pred cccCCCHHHHHHHHHHHHhhCC-C--CCC-----------cccHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCccc
Q psy164 5 EEVHITNDFEKKIADAFDIFDH-A--GNK-----------TIDCREVGTVLRALG-GCPTEADIQEIIVTCENPEFGNIA 69 (161)
Q Consensus 5 ~~~~l~~~~~~~l~~~f~~~D~-~--~~g-----------~i~~~el~~~l~~l~-~~~~~~~~~~l~~~~d~~~~~~i~ 69 (161)
+...+|..+++.+..+|..--. . +-| +++...+...++.+- ...+.--++++|...|...+|.++
T Consensus 494 ~~~~lt~~dL~~lYd~f~~e~~~~~~~~~~~~p~~~~~eqyi~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Lt 573 (671)
T KOG4347|consen 494 QTTSLTNTDLENLYDLFKEEHLTNSIGLGRSDPDFEAFEQYIDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLT 573 (671)
T ss_pred ccCccCHHHHHHHHHHHHHHHhccCcccCCCCCCchHHHHHHHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeE
Confidence 4567899999999998854321 1 111 123333333333221 122334567889999988999999
Q ss_pred hhhHHHHHHHhhhcCCCCCCcHHHHHHHHHhhCCCCCCcccHHHH
Q psy164 70 LSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYL 114 (161)
Q Consensus 70 ~~ef~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el 114 (161)
|.+++..+..+... ...+.++..|+++|.+++ ..+.++.
T Consensus 574 f~~lv~gL~~l~~~-----~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 574 FKDLVSGLSILKAG-----DALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHHHHhh-----hHHHHHHHHHhhccCCcc-ccccccc
Confidence 99999999998776 677899999999999998 8888887
No 125
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=93.43 E-value=0.4 Score=31.85 Aligned_cols=67 Identities=12% Similarity=0.129 Sum_probs=51.1
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCC-----------------------------------------------
Q psy164 91 AEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGE----------------------------------------------- 123 (161)
Q Consensus 91 ~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~----------------------------------------------- 123 (161)
...+++-..-||.|++|.|.+-|--.-+..+|.
T Consensus 6 ~T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg 85 (174)
T PF05042_consen 6 MTVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSG 85 (174)
T ss_pred ccHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcc
Confidence 356777778899999999999986554443321
Q ss_pred ------CCCHHHHHHHHhhccCCCCCceeHHHHHHHHhcc
Q psy164 124 ------PFTPEEIDEMMSTAVDQDTGRIPYEYYINHIMKS 157 (161)
Q Consensus 124 ------~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 157 (161)
.+.++.+++++..++..+.+.+++.|..+++..+
T Consensus 86 ~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~n 125 (174)
T PF05042_consen 86 AYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGN 125 (174)
T ss_pred ccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhc
Confidence 2344778899999988888899999999888764
No 126
>KOG1264|consensus
Probab=93.39 E-value=0.78 Score=37.88 Aligned_cols=147 Identities=13% Similarity=0.183 Sum_probs=90.5
Q ss_pred cCCCHHHHHH-HHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCC--CCCCccchhhHHHHHHHhhhc
Q psy164 7 VHITNDFEKK-IADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCEN--PEFGNIALSRFLPIVSGMISE 83 (161)
Q Consensus 7 ~~l~~~~~~~-l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~--~~~~~i~~~ef~~~~~~~~~~ 83 (161)
...++-++.. ++..+...|......|+..++..+|...++.++.... +...+.. -..+.++|.+|..++..++-.
T Consensus 135 ~a~~p~qI~~wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kf--l~e~~ted~~~k~dlsf~~f~~ly~~lmfs 212 (1267)
T KOG1264|consen 135 NAPTPLQIERWLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKF--LKEKFTEDGARKDDLSFEQFHLLYKKLMFS 212 (1267)
T ss_pred cCCChHHHHHHHHhhheeccchhhhheeHHhhhcccccceEEechHHH--HHHHHhHhhhccccccHHHHHHHHHHHhhc
Confidence 3456666654 4667777887777789999999999877776654322 2122221 236789999999999987765
Q ss_pred CCCCCCcHHHHHHHHHh--hCCCCCCcccHHHHHHHHHHcCCCCCHH---HHHHHHhhccCC-----CCCceeHHHHHHH
Q psy164 84 NRFQPASAEELLKAFRT--LDKDNKSYLDKEYLTKLMIEEGEPFTPE---EIDEMMSTAVDQ-----DTGRIPYEYYINH 153 (161)
Q Consensus 84 ~~~~~~~~~~~~~~f~~--~D~~~~g~I~~~el~~~l~~~g~~~~~~---~~~~~~~~~d~~-----~~g~i~~~eF~~~ 153 (161)
..+ ....+....|-. =+...--.|+..+|+++|..-....... .+..++..|-.| ..-.+...||+.+
T Consensus 213 ~~~--a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv~f 290 (1267)
T KOG1264|consen 213 QQK--AILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFVTF 290 (1267)
T ss_pred cch--hhhhcccchhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHHHH
Confidence 332 112222222221 1223345799999999997654322222 244444444222 3457899999999
Q ss_pred Hhcc
Q psy164 154 IMKS 157 (161)
Q Consensus 154 l~~~ 157 (161)
|-+.
T Consensus 291 LFSr 294 (1267)
T KOG1264|consen 291 LFSR 294 (1267)
T ss_pred Hhhc
Confidence 8764
No 127
>KOG4347|consensus
Probab=93.26 E-value=0.16 Score=40.23 Aligned_cols=58 Identities=16% Similarity=0.015 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhccCCCCCceeHHH
Q psy164 91 AEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRIPYEY 149 (161)
Q Consensus 91 ~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~e 149 (161)
...+..+|+.+|.+++|.++..+|...|..+...-.-+.+.-+++.++.+++ ..+.++
T Consensus 554 ~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~ 611 (671)
T KOG4347|consen 554 LIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREE 611 (671)
T ss_pred HHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-cccccc
Confidence 4567889999999999999999999999886544445566777777777766 554443
No 128
>KOG1707|consensus
Probab=93.06 E-value=0.21 Score=39.38 Aligned_cols=72 Identities=22% Similarity=0.347 Sum_probs=53.3
Q ss_pred ccCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCC-CHHHHHHHHHHhCCCCCCccchhhHHHHHHHh
Q psy164 6 EVHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCP-TEADIQEIIVTCENPEFGNIALSRFLPIVSGM 80 (161)
Q Consensus 6 ~~~l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~-~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 80 (161)
...+++.-.+.+..+|..+|.+++|.++..|+..++...+-.+ ....... ..-....|.+++.-|+..+...
T Consensus 306 s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~---~t~~~~~G~ltl~g~l~~WsL~ 378 (625)
T KOG1707|consen 306 SVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKD---STVKNERGWLTLNGFLSQWSLM 378 (625)
T ss_pred ceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccc---cceecccceeehhhHHHHHHHH
Confidence 5679999999999999999999999999999999998775433 2110000 0001246889999998887765
No 129
>KOG3866|consensus
Probab=92.56 E-value=0.24 Score=35.98 Aligned_cols=61 Identities=16% Similarity=0.309 Sum_probs=44.6
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHc-----CCCCCHHHH-----------HHHHhhccCCCCCceeHHHHHHHHhc
Q psy164 96 KAFRTLDKDNKSYLDKEYLTKLMIEE-----GEPFTPEEI-----------DEMMSTAVDQDTGRIPYEYYINHIMK 156 (161)
Q Consensus 96 ~~f~~~D~~~~g~I~~~el~~~l~~~-----g~~~~~~~~-----------~~~~~~~d~~~~g~i~~~eF~~~l~~ 156 (161)
..|.++|.+++|+++..||..++..- ...-.+.++ ..+++..|.|.|.-|+.++|++.-.+
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ 324 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDN 324 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhh
Confidence 35778899999999999999887542 111111111 34578899999999999999987544
No 130
>KOG1029|consensus
Probab=92.52 E-value=0.32 Score=39.59 Aligned_cols=65 Identities=12% Similarity=0.179 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHH
Q psy164 13 FEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSG 79 (161)
Q Consensus 13 ~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 79 (161)
.....+.+|+.+|+..+|+|+...-+.+|-.-++ +...+..++..-|.+++|+++-+||+-.+..
T Consensus 193 ~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~L--pq~~LA~IW~LsDvd~DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 193 NKLKYRQLFNALDKTRSGYLSGQQARSALGQSGL--PQNQLAHIWTLSDVDGDGKLSADEFILAMHL 257 (1118)
T ss_pred hhhHHHHHhhhcccccccccccHHHHHHHHhcCC--chhhHhhheeeeccCCCCcccHHHHHHHHHH
Confidence 3457789999999999999999999998876654 4556777888888899999999999976654
No 131
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=91.46 E-value=0.32 Score=30.01 Aligned_cols=32 Identities=19% Similarity=0.442 Sum_probs=23.9
Q ss_pred CCHHHHHHHHhhccCCCCCceeHHHHHHHHhc
Q psy164 125 FTPEEIDEMMSTAVDQDTGRIPYEYYINHIMK 156 (161)
Q Consensus 125 ~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 156 (161)
+++++++.+...+-.|..|.+.|-+|+.-+..
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT--
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHccc
Confidence 78999999999999999999999999987763
No 132
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=91.07 E-value=1.4 Score=26.49 Aligned_cols=83 Identities=14% Similarity=0.076 Sum_probs=52.8
Q ss_pred CCcccHHHHHHHHHHhC--CCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCCCCCCcHHHHHHHHHhhCCCCC
Q psy164 29 NKTIDCREVGTVLRALG--GCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNK 106 (161)
Q Consensus 29 ~g~i~~~el~~~l~~l~--~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~ 106 (161)
||.++..|...+-..+. +.++..+...++..+........++.+|...+...... .....-+..+|++.- -+
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~r~~~l~~L~~vA~--AD 86 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDY----EERLELVEALWEVAY--AD 86 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCH----HHHHHHHHHHHHHHH--hc
Confidence 78888888665544321 24556777777777765556678899998888764322 123355666677663 45
Q ss_pred CcccHHHHHHH
Q psy164 107 SYLDKEYLTKL 117 (161)
Q Consensus 107 g~I~~~el~~~ 117 (161)
|.+++.|-.-+
T Consensus 87 G~~~~~E~~~l 97 (104)
T cd07313 87 GELDEYEEHLI 97 (104)
T ss_pred CCCCHHHHHHH
Confidence 78888775543
No 133
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=91.06 E-value=3.7 Score=29.51 Aligned_cols=107 Identities=10% Similarity=0.072 Sum_probs=62.2
Q ss_pred HHHHHHHhhC--CCCCCcccHHHHHHHHHHh--CCCCCHHH---HHHHHHHhCCCCCCccchhhHHHHHHHhhhcCCCCC
Q psy164 16 KIADAFDIFD--HAGNKTIDCREVGTVLRAL--GGCPTEAD---IQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQP 88 (161)
Q Consensus 16 ~l~~~f~~~D--~~~~g~i~~~el~~~l~~l--~~~~~~~~---~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~ 88 (161)
-+..+|..+- ..-||.++..|+. +.+.+ .+.++.++ +..++... .....++.+|+..+......
T Consensus 54 ff~a~~aLl~~vAkADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~---k~~~~~l~~~~~~~~~~~~~----- 124 (267)
T PRK09430 54 FFNTTFAVMGHLAKAKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREG---KEPDFPLREKLRQFRSVCGG----- 124 (267)
T ss_pred HHHHHHHHHHHHHhcCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHh---cccCCCHHHHHHHHHHHhcc-----
Confidence 3344554443 2348999999987 33433 13344555 44555443 34458899999988765522
Q ss_pred CcHHH----HHHHHHhhCCCCCCcccHHHH---HHHHHHcCCCCCHHHHHHHHhh
Q psy164 89 ASAEE----LLKAFRTLDKDNKSYLDKEYL---TKLMIEEGEPFTPEEIDEMMST 136 (161)
Q Consensus 89 ~~~~~----~~~~f~~~D~~~~g~I~~~el---~~~l~~~g~~~~~~~~~~~~~~ 136 (161)
.... +...|++.= -||.++..|- +++..-+| ++..++..+...
T Consensus 125 -r~~l~~~lL~~l~~vA~--ADG~l~~~E~~~L~~Ia~~Lg--is~~df~~~~~~ 174 (267)
T PRK09430 125 -RFDLLRMFLEIQIQAAF--ADGSLHPNERQVLYVIAEELG--FSRFQFDQLLRM 174 (267)
T ss_pred -cHHHHHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence 2222 244555552 3588999873 33444455 888787777665
No 134
>PLN02222 phosphoinositide phospholipase C 2
Probab=91.01 E-value=1.4 Score=35.17 Aligned_cols=66 Identities=11% Similarity=0.283 Sum_probs=52.3
Q ss_pred cHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCC--CCCHHHHHHHHhhccC-CCCCceeHHHHHHHHhcc
Q psy164 90 SAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGE--PFTPEEIDEMMSTAVD-QDTGRIPYEYYINHIMKS 157 (161)
Q Consensus 90 ~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~--~~~~~~~~~~~~~~d~-~~~g~i~~~eF~~~l~~~ 157 (161)
...++..+|..+.. ++.++.++|..+|...+. ..+.+.+..++..+.. ...+.++++.|..+|.+.
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcCC
Confidence 44699999999963 479999999999998653 3577788888887632 346679999999999863
No 135
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=90.91 E-value=1.4 Score=24.54 Aligned_cols=47 Identities=9% Similarity=0.143 Sum_probs=32.3
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHhhccCCCCCceeHHHHHHHHh
Q psy164 109 LDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIM 155 (161)
Q Consensus 109 I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 155 (161)
++.+++..++..-|..+++.++..+++.-+..+--..+-..+..++.
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL~ 60 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFLN 60 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHHH
Confidence 34457888888888888888888888887655555555555555544
No 136
>PLN02952 phosphoinositide phospholipase C
Probab=90.87 E-value=4.9 Score=32.40 Aligned_cols=89 Identities=7% Similarity=0.102 Sum_probs=62.0
Q ss_pred CCCcccHHHHHHHHHHhCC--CCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCCCCCCcHHHHHHHHHhh----
Q psy164 28 GNKTIDCREVGTVLRALGG--CPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTL---- 101 (161)
Q Consensus 28 ~~g~i~~~el~~~l~~l~~--~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~f~~~---- 101 (161)
+.|.++.+++..+.+.+.. ..+.+++..+|..+.. +.+.++.++|..++........ ........++..+
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~---~~~~~~~~i~~~~~~~~ 88 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELD---CTLAEAQRIVEEVINRR 88 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcC---CCHHHHHHHHHHHHhhc
Confidence 4689999999888877643 3367899999999964 3468999999999998765421 3334444554432
Q ss_pred C---CCCCCcccHHHHHHHHHH
Q psy164 102 D---KDNKSYLDKEYLTKLMIE 120 (161)
Q Consensus 102 D---~~~~g~I~~~el~~~l~~ 120 (161)
. ..+.+.++.+.|..+|..
T Consensus 89 ~~~~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 89 HHVTRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred cccccccccCcCHHHHHHHHcC
Confidence 1 113356899999988863
No 137
>KOG2243|consensus
Probab=90.42 E-value=0.65 Score=40.68 Aligned_cols=59 Identities=15% Similarity=0.238 Sum_probs=48.2
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHH
Q psy164 20 AFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSG 79 (161)
Q Consensus 20 ~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 79 (161)
.|..+|+++.|.|+..+|..++.... ..+..++.-++.-...+++..++|.+|+.-+..
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~k-~ytqse~dfllscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGHK-HYTQSEIDFLLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhccc-cchhHHHHHHHHhhccCccccccHHHHHHHhcC
Confidence 56788999999999999999887432 456778888888777788899999999986643
No 138
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=90.23 E-value=0.21 Score=28.07 Aligned_cols=49 Identities=10% Similarity=0.243 Sum_probs=34.2
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHhhccCCCCCceeHHHHHHHHhcc
Q psy164 106 KSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIMKS 157 (161)
Q Consensus 106 ~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 157 (161)
+-.|+...|-.++ ...+++.....+...++.=..++|+.++|++.|+.+
T Consensus 6 sp~~~F~~L~~~l---~~~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 6 SPWMPFPMLFSAL---SKHLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred CCcccHHHHHHHH---HHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3345544444444 444667777888888877788899999999988764
No 139
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=90.11 E-value=2.6 Score=24.93 Aligned_cols=64 Identities=20% Similarity=0.281 Sum_probs=41.3
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHh-------CC----CCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHh
Q psy164 14 EKKIADAFDIFDHAGNKTIDCREVGTVLRAL-------GG----CPTEADIQEIIVTCENPEFGNIALSRFLPIVSGM 80 (161)
Q Consensus 14 ~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l-------~~----~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 80 (161)
.++++-+|+.. .|.+|.++...|..+|+.+ |- ...+..++..|... .....|+..+|+.++..-
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT-
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhC
Confidence 35678889888 6679999999988888743 21 22567777778776 245679999999998864
No 140
>KOG4578|consensus
Probab=90.09 E-value=0.35 Score=35.38 Aligned_cols=64 Identities=8% Similarity=0.064 Sum_probs=50.2
Q ss_pred HHHHHHHhCCCCCCccchhhHHHHHHHhhhcCCCCCCcHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q psy164 53 IQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIE 120 (161)
Q Consensus 53 ~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~ 120 (161)
+.-.|..+|.++++.|+-.|+..+-..+... .......+..|+..|.+++-.||..|++..|..
T Consensus 335 v~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~----s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 335 VHWYFNQLDKNSNNDIERREWKPFKRVLLKK----SKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeeecccccCccchhhcchHHHHHHhh----ccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 4455788899999999888866655544433 266678899999999999999999999988754
No 141
>PLN02228 Phosphoinositide phospholipase C
Probab=89.81 E-value=2.6 Score=33.68 Aligned_cols=67 Identities=7% Similarity=0.206 Sum_probs=52.1
Q ss_pred CcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcC-C-CCCHHHHHHHHhhccCC----CCCceeHHHHHHHHhcc
Q psy164 89 ASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEG-E-PFTPEEIDEMMSTAVDQ----DTGRIPYEYYINHIMKS 157 (161)
Q Consensus 89 ~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g-~-~~~~~~~~~~~~~~d~~----~~g~i~~~eF~~~l~~~ 157 (161)
.+..++..+|..+-. ++.++.++|..+|...+ . ..+.+.+..++..+... ..|.++.+.|..+|.+.
T Consensus 21 ~~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 21 EPPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred CCcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 456899999999853 36899999999999864 2 24566788888887532 34679999999999864
No 142
>PLN02230 phosphoinositide phospholipase C 4
Probab=89.75 E-value=2.5 Score=33.98 Aligned_cols=67 Identities=16% Similarity=0.288 Sum_probs=50.6
Q ss_pred CcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcC-C--CCCHHHHHHHHhhcc-------CCCCCceeHHHHHHHHhc
Q psy164 89 ASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEG-E--PFTPEEIDEMMSTAV-------DQDTGRIPYEYYINHIMK 156 (161)
Q Consensus 89 ~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g-~--~~~~~~~~~~~~~~d-------~~~~g~i~~~eF~~~l~~ 156 (161)
....+++.+|..|-.+ .+.++.++|..+|...+ . ..+.+++..++..+- .-+.+.++.+.|..+|.+
T Consensus 26 ~p~~ei~~lf~~~s~~-~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 26 GPVADVRDLFEKYADG-DAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CCcHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 4568999999999544 48999999999999976 2 346677777776431 123456999999999976
No 143
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.10 E-value=5.2 Score=25.76 Aligned_cols=109 Identities=15% Similarity=0.160 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh--CCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCCCCC
Q psy164 11 NDFEKKIADAFDIFDHAGNKTIDCREVGTVLRAL--GGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQP 88 (161)
Q Consensus 11 ~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l--~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~ 88 (161)
|.-...+ -.|..... +|.++..|...+..-+ .+.++.+++..++.....-+...+++..|...+...+...
T Consensus 27 P~lAa~~-Llf~Vm~A--DG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~e---- 99 (148)
T COG4103 27 PRLAAAA-LLFHVMEA--DGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDEE---- 99 (148)
T ss_pred HHHHHHH-HHHHHHhc--ccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCHH----
Confidence 3333344 66777766 5667776644443221 3556778888888877655677899999999988654431
Q ss_pred CcHHHHHHHHHhhCCCCCCcccHHHHHHHHHH---cCCCCCHHHH
Q psy164 89 ASAEELLKAFRTLDKDNKSYLDKEYLTKLMIE---EGEPFTPEEI 130 (161)
Q Consensus 89 ~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~---~g~~~~~~~~ 130 (161)
...+.+..+|.+. ..+|.+++.|-.-+++. +| +++++.
T Consensus 100 ~R~eli~~mweIa--~ADg~l~e~Ed~vi~RvAeLLg--V~~~d~ 140 (148)
T COG4103 100 QRLELIGLMWEIA--YADGELDESEDHVIWRVAELLG--VSPEDR 140 (148)
T ss_pred HHHHHHHHHHHHH--HccccccHHHHHHHHHHHHHhC--CCHHHH
Confidence 3345667777766 35688888876555543 56 555443
No 144
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=87.45 E-value=0.81 Score=29.36 Aligned_cols=50 Identities=12% Similarity=0.127 Sum_probs=28.8
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhccCC-------CCCceeHHHHHHHHhc
Q psy164 105 NKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQ-------DTGRIPYEYYINHIMK 156 (161)
Q Consensus 105 ~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~-------~~g~i~~~eF~~~l~~ 156 (161)
..+.+|++||.+.=+-... +...+..+++.|..+ ..+.|+|+.|..+|..
T Consensus 4 ~~~~lsp~eF~qLq~y~ey--s~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~ 60 (138)
T PF14513_consen 4 EWVSLSPEEFAQLQKYSEY--STKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKT 60 (138)
T ss_dssp --S-S-HHHHHHHHHHHHH------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHH
T ss_pred ceeccCHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHH
Confidence 4678899988876655432 333566666666332 3568999999999875
No 145
>KOG3449|consensus
Probab=85.85 E-value=6 Score=24.19 Aligned_cols=57 Identities=12% Similarity=0.267 Sum_probs=45.8
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHH
Q psy164 17 IADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVS 78 (161)
Q Consensus 17 l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~ 78 (161)
+...|..+...++...+..++..+|.+.|.....+.+..++..+. |+ +.++.+..=.
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~----GK-~i~ElIA~G~ 59 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK----GK-DIEELIAAGR 59 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc----CC-CHHHHHHHhH
Confidence 345677788888888999999999999999999999999998883 44 6777665433
No 146
>KOG2871|consensus
Probab=85.79 E-value=1.5 Score=32.78 Aligned_cols=41 Identities=15% Similarity=0.287 Sum_probs=34.3
Q ss_pred CcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHH
Q psy164 89 ASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEE 129 (161)
Q Consensus 89 ~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~ 129 (161)
+....++++|+.+|+.++|+|+.+-++.++......+++..
T Consensus 306 ~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a 346 (449)
T KOG2871|consen 306 NPSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPA 346 (449)
T ss_pred CCCHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHH
Confidence 34678999999999999999999999999998875555433
No 147
>KOG2871|consensus
Probab=85.41 E-value=0.97 Score=33.75 Aligned_cols=65 Identities=22% Similarity=0.346 Sum_probs=48.6
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHH-HHhCCCCCCccchhhHHHHHH
Q psy164 14 EKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEII-VTCENPEFGNIALSRFLPIVS 78 (161)
Q Consensus 14 ~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~-~~~d~~~~~~i~~~ef~~~~~ 78 (161)
...++++|...|+.++|+|+..-++.++..++..+++...-.++ ...++..-|.|-...|...+.
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~~ 373 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEFF 373 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEecccccccc
Confidence 45678999999999999999999999999999777765544444 455555566666666655444
No 148
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=84.94 E-value=0.74 Score=29.27 Aligned_cols=89 Identities=16% Similarity=0.164 Sum_probs=50.3
Q ss_pred CCCcccHHHHHHHHHHh--CCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCCCCCCcHHHHHHHHHhhCCCC
Q psy164 28 GNKTIDCREVGTVLRAL--GGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDN 105 (161)
Q Consensus 28 ~~g~i~~~el~~~l~~l--~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~ 105 (161)
-||.++..|...+...+ ....+......+...+.......+++.+|+..+...... ......+..++.+.-.|
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~r~~ll~~l~~ia~AD- 110 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSP----EEREDLLRMLIAIAYAD- 110 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--H----HHHHHHHHHHHHHCTCT-
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhch----HHHHHHHHHHHHHHhcC-
Confidence 47899999887776655 223344556666666654334467788888776653221 13345667777777654
Q ss_pred CCcccHHH---HHHHHHHcC
Q psy164 106 KSYLDKEY---LTKLMIEEG 122 (161)
Q Consensus 106 ~g~I~~~e---l~~~l~~~g 122 (161)
|.++..| +..+...+|
T Consensus 111 -G~~~~~E~~~l~~ia~~L~ 129 (140)
T PF05099_consen 111 -GEISPEEQEFLRRIAEALG 129 (140)
T ss_dssp -TC-SCCHHHHHHHHHHHCT
T ss_pred -CCCCHHHHHHHHHHHHHcC
Confidence 6666655 344444566
No 149
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=83.61 E-value=3.6 Score=22.62 Aligned_cols=32 Identities=19% Similarity=0.439 Sum_probs=28.6
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q psy164 29 NKTIDCREVGTVLRALGGCPTEADIQEIIVTC 60 (161)
Q Consensus 29 ~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~ 60 (161)
+--|+.+.++.++.+.|.+|++..++.++...
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 55799999999999999999999999988765
No 150
>KOG4070|consensus
Probab=83.61 E-value=4.6 Score=26.29 Aligned_cols=89 Identities=11% Similarity=0.163 Sum_probs=56.0
Q ss_pred HHHHHHHHhhCCCC----CC-cccHHHHHHHHHHhCC----CCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCC
Q psy164 15 KKIADAFDIFDHAG----NK-TIDCREVGTVLRALGG----CPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENR 85 (161)
Q Consensus 15 ~~l~~~f~~~D~~~----~g-~i~~~el~~~l~~l~~----~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~ 85 (161)
..+++.|..|-.-+ +| .++...+..+++..++ .++..++...|..+....-+.++|++|...+..+...+.
T Consensus 12 a~~~~~f~~Fa~fGd~~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~ela~~R~ 91 (180)
T KOG4070|consen 12 AGLEESFRAFAKFGDSKASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEELATKRF 91 (180)
T ss_pred hhHHHHHHHHHHcCCccccccccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHHHHHhhh
Confidence 34455555553322 33 4666778888876654 455556666666665444678999999888887765443
Q ss_pred CCCCcHHHHHHHHHhhCC
Q psy164 86 FQPASAEELLKAFRTLDK 103 (161)
Q Consensus 86 ~~~~~~~~~~~~f~~~D~ 103 (161)
......+.+..+.+++-.
T Consensus 92 k~Ks~ee~l~~I~~llag 109 (180)
T KOG4070|consen 92 KGKSKEEALDAICQLLAG 109 (180)
T ss_pred cCCCHHHHHHHHHHHHhc
Confidence 334556677777776643
No 151
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=83.08 E-value=7.9 Score=23.30 Aligned_cols=63 Identities=14% Similarity=0.045 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCCCCCCcHHHHHHHHHhhC---CCCCCcccHHHHHHHHHHc
Q psy164 49 TEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLD---KDNKSYLDKEYLTKLMIEE 121 (161)
Q Consensus 49 ~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~f~~~D---~~~~g~I~~~el~~~l~~~ 121 (161)
....|+.-|..+.. +|.+.-..|-.++... ...+....+|..+- .-....|+.+||+.++..+
T Consensus 28 ~W~~VE~RFd~La~--dG~L~rs~Fg~CIGM~--------dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 28 GWKEVEKRFDKLAK--DGLLPRSDFGECIGMK--------DSKEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp -HHHHHHHHHHH-B--TTBEEGGGHHHHHT----------S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCc--CCcccHHHHHHhcCCc--------ccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 36677777777754 7899999999988864 34455666665552 2235778888888887653
No 152
>KOG3866|consensus
Probab=82.72 E-value=15 Score=27.16 Aligned_cols=113 Identities=11% Similarity=0.080 Sum_probs=65.0
Q ss_pred CCCHHHHHHHHHHHHhhC-----CCC-CCcccHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHh
Q psy164 8 HITNDFEKKIADAFDIFD-----HAG-NKTIDCREVGTVLRAL-GGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGM 80 (161)
Q Consensus 8 ~l~~~~~~~l~~~f~~~D-----~~~-~g~i~~~el~~~l~~l-~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 80 (161)
.+++++..+...-+...- ..+ +---+..++..+.... |+.++.-.-...|...|.+++|.++-.+.-+++...
T Consensus 194 ~l~eE~Rkeaesk~EE~~krH~~HpKvnhPGSkdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtkE 273 (442)
T KOG3866|consen 194 QLTEEERKEAESKHEESLKRHNDHPKVNHPGSKDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTKE 273 (442)
T ss_pred hcCHHHHHHHHHHHHHHHHhhccCccCCCCCcHHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHHH
Confidence 466666665554443221 111 1112455666666543 666665555667777788888888888777766554
Q ss_pred hhcCCCCCCcHH--------HH---HHHHHhhCCCCCCcccHHHHHHHHHH
Q psy164 81 ISENRFQPASAE--------EL---LKAFRTLDKDNKSYLDKEYLTKLMIE 120 (161)
Q Consensus 81 ~~~~~~~~~~~~--------~~---~~~f~~~D~~~~g~I~~~el~~~l~~ 120 (161)
+...--+.+..+ .+ ..+.+..|.+.+..||.+||-..-..
T Consensus 274 LEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ 324 (442)
T KOG3866|consen 274 LEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDN 324 (442)
T ss_pred HHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhh
Confidence 322100011111 11 22567779999999999999766543
No 153
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=81.92 E-value=8.1 Score=22.59 Aligned_cols=33 Identities=9% Similarity=0.086 Sum_probs=28.2
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHhhccC
Q psy164 107 SYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVD 139 (161)
Q Consensus 107 g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~ 139 (161)
..||..||.++.+..|.++|++++..++...-.
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~ 45 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRG 45 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhc
Confidence 468999999999999999999999988887643
No 154
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=81.76 E-value=3.7 Score=22.18 Aligned_cols=55 Identities=11% Similarity=0.255 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhh
Q psy164 9 ITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSR 72 (161)
Q Consensus 9 l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~e 72 (161)
||+.....|+.+|.... ..+.+...++...|. ++...+-.++..+. ..|-|.++.
T Consensus 2 Lt~~~e~YL~~Iy~l~~--~~~~v~~~~iA~~L~-----vs~~tvt~ml~~L~--~~GlV~~~~ 56 (60)
T PF01325_consen 2 LTESEEDYLKAIYELSE--EGGPVRTKDIAERLG-----VSPPTVTEMLKRLA--EKGLVEYEP 56 (60)
T ss_dssp CSCHHHHHHHHHHHHHH--CTSSBBHHHHHHHHT-----S-HHHHHHHHHHHH--HTTSEEEET
T ss_pred CCcHHHHHHHHHHHHHc--CCCCccHHHHHHHHC-----CChHHHHHHHHHHH--HCCCEEecC
Confidence 56777888999998876 578899999997764 55667777777763 345555543
No 155
>PRK00523 hypothetical protein; Provisional
Probab=81.29 E-value=4.7 Score=22.66 Aligned_cols=32 Identities=19% Similarity=0.393 Sum_probs=28.9
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q psy164 29 NKTIDCREVGTVLRALGGCPTEADIQEIIVTC 60 (161)
Q Consensus 29 ~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~ 60 (161)
+--|+.+.++..+.+.|.+|++..++.++...
T Consensus 37 NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 37 NPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred CcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 55789999999999999999999999988776
No 156
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=81.29 E-value=12 Score=24.11 Aligned_cols=66 Identities=8% Similarity=0.061 Sum_probs=36.1
Q ss_pred CccchhhHHHHHHHhhhcCCCCCCcHHHHHHHHHhhC-------CCCCCcccHHHHHHHHHH-cCCCCCHHHHHHHHhhc
Q psy164 66 GNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLD-------KDNKSYLDKEYLTKLMIE-EGEPFTPEEIDEMMSTA 137 (161)
Q Consensus 66 ~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~f~~~D-------~~~~g~I~~~el~~~l~~-~g~~~~~~~~~~~~~~~ 137 (161)
+.++-.+|.++-....-. ...++.+...|. -+..+.|+.+-|+.+|+. +...++.+-...++..|
T Consensus 6 ~~lsp~eF~qLq~y~eys-------~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF 78 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSEYS-------TKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSF 78 (138)
T ss_dssp S-S-HHHHHHHHHHHHH-----------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS
T ss_pred eccCHHHHHHHHHHHHHH-------HHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 456777777765554322 123344433331 224568999999999998 56677777778888776
Q ss_pred c
Q psy164 138 V 138 (161)
Q Consensus 138 d 138 (161)
-
T Consensus 79 ~ 79 (138)
T PF14513_consen 79 Q 79 (138)
T ss_dssp -
T ss_pred h
Confidence 4
No 157
>PLN02223 phosphoinositide phospholipase C
Probab=80.84 E-value=10 Score=30.21 Aligned_cols=68 Identities=7% Similarity=0.067 Sum_probs=50.8
Q ss_pred CcHHHHHHHHHhhCCCCCCcccHHHHHHHH---HHc-C-CCCCHHHHHHHHhhccCC--------CCCceeHHHHHHHHh
Q psy164 89 ASAEELLKAFRTLDKDNKSYLDKEYLTKLM---IEE-G-EPFTPEEIDEMMSTAVDQ--------DTGRIPYEYYINHIM 155 (161)
Q Consensus 89 ~~~~~~~~~f~~~D~~~~g~I~~~el~~~l---~~~-g-~~~~~~~~~~~~~~~d~~--------~~g~i~~~eF~~~l~ 155 (161)
..-+.++.+|..|- .+.|.++.+.+.+++ ... | ...+.+++..++..+-.. ..+.++.+.|.++|.
T Consensus 13 ~~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~ 91 (537)
T PLN02223 13 NQPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLF 91 (537)
T ss_pred CCcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhc
Confidence 45578999999994 678999999999998 543 3 356777777777764221 235699999999997
Q ss_pred cc
Q psy164 156 KS 157 (161)
Q Consensus 156 ~~ 157 (161)
+.
T Consensus 92 s~ 93 (537)
T PLN02223 92 ST 93 (537)
T ss_pred Cc
Confidence 63
No 158
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=79.81 E-value=2.8 Score=23.45 Aligned_cols=53 Identities=15% Similarity=0.232 Sum_probs=33.7
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC-------CCCccchhhHHH
Q psy164 15 KKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENP-------EFGNIALSRFLP 75 (161)
Q Consensus 15 ~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~-------~~~~i~~~ef~~ 75 (161)
+++...|+.+ .++.++|+..+|+..|. + ++++-+...+... ..|.++|..|+.
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l~-----p--e~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSLT-----P--EQAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS------C--CCHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHcC-----c--HHHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 3557889988 67789999999998753 2 2223333333221 136788888864
No 159
>KOG2301|consensus
Probab=79.47 E-value=1.4 Score=39.31 Aligned_cols=72 Identities=17% Similarity=0.165 Sum_probs=53.4
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCC----CCHHHHHHHHHHhCCCCCCccchhhHHHHHHHh
Q psy164 8 HITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGC----PTEADIQEIIVTCENPEFGNIALSRFLPIVSGM 80 (161)
Q Consensus 8 ~l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~----~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 80 (161)
.|++...+++.++|..+|++..|+|+..++..+++.+.-+ ...+. +.+--.+....++.|++.+-+.++...
T Consensus 1410 ~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~r 1485 (1592)
T KOG2301|consen 1410 GLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTKR 1485 (1592)
T ss_pred cCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHHH
Confidence 7999999999999999999999999999999999876432 22221 222223333457889998887777653
No 160
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=79.28 E-value=13 Score=23.46 Aligned_cols=29 Identities=10% Similarity=-0.004 Sum_probs=20.6
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHc
Q psy164 93 ELLKAFRTLDKDNKSYLDKEYLTKLMIEE 121 (161)
Q Consensus 93 ~~~~~f~~~D~~~~g~I~~~el~~~l~~~ 121 (161)
.+-.++..||++++|.|+.-.++.++..+
T Consensus 98 ~ln~Ll~vyD~~rtG~I~vls~KvaL~~L 126 (127)
T PF09068_consen 98 LLNWLLNVYDSQRTGKIRVLSFKVALITL 126 (127)
T ss_dssp HHHHHHHHH-TT--SEEEHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCCeeehhHHHHHHHHh
Confidence 34556789999999999999999887654
No 161
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=79.03 E-value=1.9 Score=26.67 Aligned_cols=32 Identities=16% Similarity=0.199 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHhCCCCCCccchhhHHHHHHH
Q psy164 48 PTEADIQEIIVTCENPEFGNIALSRFLPIVSG 79 (161)
Q Consensus 48 ~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 79 (161)
+++++++.++..+-.+..|+|.|.+|+.-+..
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT--
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHccc
Confidence 67899999999999899999999999987764
No 162
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=79.02 E-value=15 Score=23.85 Aligned_cols=81 Identities=14% Similarity=0.256 Sum_probs=49.0
Q ss_pred CccchhhHHHHHHHhhh-----cCCCCCCcH---HHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHh--
Q psy164 66 GNIALSRFLPIVSGMIS-----ENRFQPASA---EELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMS-- 135 (161)
Q Consensus 66 ~~i~~~ef~~~~~~~~~-----~~~~~~~~~---~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~-- 135 (161)
..|++++|...+..... ... ..... .....+|..+ |...=+.+-..++|..++++|+..++.
T Consensus 47 e~Is~~ef~~~v~~~~~~~k~~~g~-~~~~~~~~q~~~qvW~~~-------V~~~ll~~e~eklGi~Vs~~El~d~l~~g 118 (145)
T PF13623_consen 47 EKISYQEFQQRVEQATENYKQQNGR-SPTEQEQNQIRNQVWNQM-------VQNILLEQEFEKLGITVSDDELQDMLNQG 118 (145)
T ss_pred EEcCHHHHHHHHHHHHHHHHHHcCC-CCChHHHHHHHHHHHHHH-------HHHHHHHHHHHHhCCccCHHHHHHHHhcC
Confidence 36889999887765531 111 01111 2334445433 444446666777898889988888871
Q ss_pred --------hccCCCCCceeHHHHHHHH
Q psy164 136 --------TAVDQDTGRIPYEYYINHI 154 (161)
Q Consensus 136 --------~~d~~~~g~i~~~eF~~~l 154 (161)
.+-.+..|..+...+.+++
T Consensus 119 ~~p~~~~~~~f~~~tG~Fd~~~l~~fl 145 (145)
T PF13623_consen 119 TNPMLQQNPFFNPQTGQFDRAKLKQFL 145 (145)
T ss_pred CCchhhhccccCcccCCcCHHHHHhhC
Confidence 1234578888888887664
No 163
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=78.17 E-value=8 Score=23.59 Aligned_cols=49 Identities=18% Similarity=0.298 Sum_probs=31.9
Q ss_pred HhhCCCCCCcccHHHHHHHHHH----------cCCCCCHHHHHHHHhhccCCCCCceeH
Q psy164 99 RTLDKDNKSYLDKEYLTKLMIE----------EGEPFTPEEIDEMMSTAVDQDTGRIPY 147 (161)
Q Consensus 99 ~~~D~~~~g~I~~~el~~~l~~----------~g~~~~~~~~~~~~~~~d~~~~g~i~~ 147 (161)
++||...+.+||.++++++... -|..+|..-+..++-.....+...++-
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~ 68 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLST 68 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCH
Confidence 5678888888888888888864 155566666666655554444444443
No 164
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=78.10 E-value=8.7 Score=20.67 Aligned_cols=38 Identities=16% Similarity=0.148 Sum_probs=29.3
Q ss_pred cccCCCHHHHHHHHHHHHhhCCCCCCc----ccHHHHHHHHHHhCCC
Q psy164 5 EEVHITNDFEKKIADAFDIFDHAGNKT----IDCREVGTVLRALGGC 47 (161)
Q Consensus 5 ~~~~l~~~~~~~l~~~f~~~D~~~~g~----i~~~el~~~l~~l~~~ 47 (161)
.++.+|++|.+.+...|... |+ ++..+...+...+|+.
T Consensus 4 ~RT~Ft~~Q~~~Le~~fe~~-----~y~~~~~~~~~r~~la~~lgl~ 45 (58)
T TIGR01565 4 RRTKFTAEQKEKMRDFAEKL-----GWKLKDKRREEVREFCEEIGVT 45 (58)
T ss_pred CCCCCCHHHHHHHHHHHHHc-----CCCCCCCCHHHHHHHHHHhCCC
Confidence 45789999999999988754 44 7777777777777754
No 165
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=77.44 E-value=8.3 Score=20.10 Aligned_cols=47 Identities=17% Similarity=0.196 Sum_probs=36.0
Q ss_pred cccCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy164 5 EEVHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIV 58 (161)
Q Consensus 5 ~~~~l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~ 58 (161)
....+|++++..|...|.. +.+++..+...+...+|++ ...|..-|.
T Consensus 3 ~r~~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~l~l~--~~~V~~WF~ 49 (57)
T PF00046_consen 3 KRTRFTKEQLKVLEEYFQE-----NPYPSKEEREELAKELGLT--ERQVKNWFQ 49 (57)
T ss_dssp SSSSSSHHHHHHHHHHHHH-----SSSCHHHHHHHHHHHHTSS--HHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH-----hcccccccccccccccccc--ccccccCHH
Confidence 4567999999999999984 5678888888888888754 556655543
No 166
>KOG4301|consensus
Probab=77.16 E-value=8.3 Score=28.70 Aligned_cols=97 Identities=8% Similarity=0.110 Sum_probs=59.7
Q ss_pred HHHHhCCCCCCccchhhHHHHHHHhhhcCCCCCCcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHH------
Q psy164 56 IIVTCENPEFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEE------ 129 (161)
Q Consensus 56 l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~------ 129 (161)
++..+|..+.|.++...-...+...... ...+.++.+|.... +.+|.+..-.+-+++...-...|+.-
T Consensus 115 lLaA~ds~~~g~~~vfavkialatlc~g-----k~~dklryIfs~is-ds~gim~~i~~~~fl~evlslpT~v~e~psfg 188 (434)
T KOG4301|consen 115 LLAAEDSEGQGKQQVFAVKIALATLCGG-----KIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHEVLSLPTAVFEGPSFG 188 (434)
T ss_pred HHhhcCccCCCCceeecchhhhhhhccc-----hHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHcCCchhhcCCCcc
Confidence 4556666666766655555555544433 44678999999885 56788887777777776321122111
Q ss_pred HHHHHhhccCCCCCceeHHHHHHHHhccc
Q psy164 130 IDEMMSTAVDQDTGRIPYEYYINHIMKSE 158 (161)
Q Consensus 130 ~~~~~~~~d~~~~g~i~~~eF~~~l~~~~ 158 (161)
..+.......-.+.+|+.+.|+..|..+|
T Consensus 189 ~te~~a~~cf~qqrKv~Ln~fldtl~sdp 217 (434)
T KOG4301|consen 189 YTELSARLCFLQQRKVELNQFLDTLMSDP 217 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 11222233345567899999999988765
No 167
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=76.89 E-value=11 Score=21.05 Aligned_cols=48 Identities=6% Similarity=0.109 Sum_probs=31.0
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHH
Q psy164 32 IDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSG 79 (161)
Q Consensus 32 i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 79 (161)
++.+++..+++..|..++.+++..++..-+..+-...+-..+..++..
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL~G 61 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFLNG 61 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHHHH
Confidence 344678888888889999998888887765433333343444444433
No 168
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=76.43 E-value=7.6 Score=23.37 Aligned_cols=62 Identities=11% Similarity=0.139 Sum_probs=40.5
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC---CCCccchhhHHHHHHHh
Q psy164 14 EKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENP---EFGNIALSRFLPIVSGM 80 (161)
Q Consensus 14 ~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~---~~~~i~~~ef~~~~~~~ 80 (161)
...+...|..+-. +|+|+...|..++ |..-+.+-+..||..+... ....|+-.|...++..+
T Consensus 29 W~~VE~RFd~La~--dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 29 WKEVEKRFDKLAK--DGLLPRSDFGECI---GMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp HHHHHHHHHHH-B--TTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc--CCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 5667777887776 8999999999876 5555566667777655422 24678888877777654
No 169
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=76.38 E-value=7.9 Score=21.29 Aligned_cols=33 Identities=15% Similarity=0.401 Sum_probs=29.3
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhc
Q psy164 105 NKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTA 137 (161)
Q Consensus 105 ~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 137 (161)
.+..|+.+-++.++..+|.++|+..+..+++..
T Consensus 28 ~NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 28 ENPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred HCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 356799999999999999999999999988765
No 170
>KOG4403|consensus
Probab=75.86 E-value=8.4 Score=29.62 Aligned_cols=57 Identities=14% Similarity=0.152 Sum_probs=39.8
Q ss_pred CCCCccchhhHHHHHHHhhhcCCCCCCcHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q psy164 63 PEFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIE 120 (161)
Q Consensus 63 ~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~ 120 (161)
.++...+-.+|+.........+ ...-..+.++.+-+.+|.|++|.|+++|--.+|+.
T Consensus 40 agds~at~nefc~~~~~~c~s~-~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrE 96 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSE-QDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLRE 96 (575)
T ss_pred cCCchhhhccchhcCCchhhcc-cchhhHHHHHHHHHhcccccCCCcccccchHHHHH
Confidence 3455677777776655443321 11244678899999999999999999988777766
No 171
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=75.80 E-value=5.8 Score=21.74 Aligned_cols=38 Identities=26% Similarity=0.418 Sum_probs=28.7
Q ss_pred HhhCCCCCCcccHHHHHHHHHH----------cCCCCCHHHHHHHHhh
Q psy164 99 RTLDKDNKSYLDKEYLTKLMIE----------EGEPFTPEEIDEMMST 136 (161)
Q Consensus 99 ~~~D~~~~g~I~~~el~~~l~~----------~g~~~~~~~~~~~~~~ 136 (161)
++||...+.+|+.++++++... -|..+|..-+.+++-.
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktgeDiT~~iL~QIi~e 57 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVREGEDFKVVDAKTGEDITRSILLQIILE 57 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHCCCeEEEEECCCCcccHHHHHHHHHHH
Confidence 5789999999999999999975 1556666666555544
No 172
>PRK01844 hypothetical protein; Provisional
Probab=75.72 E-value=8.5 Score=21.66 Aligned_cols=32 Identities=16% Similarity=0.368 Sum_probs=28.6
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q psy164 29 NKTIDCREVGTVLRALGGCPTEADIQEIIVTC 60 (161)
Q Consensus 29 ~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~ 60 (161)
+--|+.+.++..+.+.|.+|++..++.+....
T Consensus 36 NPpine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 36 NPPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45789999999999999999999999988776
No 173
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=75.17 E-value=4.4 Score=24.23 Aligned_cols=51 Identities=14% Similarity=0.047 Sum_probs=32.0
Q ss_pred CCcccHHHHHHHHHHcC--CCCCHHHHHHHHhhccCCCCCceeHHHHHHHHhc
Q psy164 106 KSYLDKEYLTKLMIEEG--EPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIMK 156 (161)
Q Consensus 106 ~g~I~~~el~~~l~~~g--~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 156 (161)
+|.|+..|...+-.-+. ..+++.+...++..+........++.+|.+.+..
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 57777777655443321 1367777777777776555566677777776654
No 174
>KOG3449|consensus
Probab=74.39 E-value=15 Score=22.59 Aligned_cols=44 Identities=14% Similarity=0.151 Sum_probs=37.6
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcc
Q psy164 95 LKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAV 138 (161)
Q Consensus 95 ~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d 138 (161)
..+|-+++.-++-..+..+++.+|...|..+.++.++.++....
T Consensus 4 vaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~ 47 (112)
T KOG3449|consen 4 VAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK 47 (112)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc
Confidence 44666777778888999999999999999999999999988873
No 175
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=74.35 E-value=10 Score=19.68 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=36.7
Q ss_pred cccCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy164 5 EEVHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIV 58 (161)
Q Consensus 5 ~~~~l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~ 58 (161)
....+++++...|...|.. +.+.+..++..+...+| ++...|..-|.
T Consensus 3 ~r~~~~~~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~--l~~~qV~~WF~ 49 (59)
T cd00086 3 KRTRFTPEQLEELEKEFEK-----NPYPSREEREELAKELG--LTERQVKIWFQ 49 (59)
T ss_pred CCCcCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHC--cCHHHHHHHHH
Confidence 3457899999999999987 55888899999888887 44566666554
No 176
>KOG0039|consensus
Probab=73.90 E-value=9.5 Score=31.20 Aligned_cols=82 Identities=18% Similarity=0.188 Sum_probs=59.8
Q ss_pred CCccchhhHHHHHHHhhhcCCCCCCcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHc--------CCCCCHHHHHHHHhh
Q psy164 65 FGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEE--------GEPFTPEEIDEMMST 136 (161)
Q Consensus 65 ~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~--------g~~~~~~~~~~~~~~ 136 (161)
++ +++++|. ... -.....++..|..+|. .+|.++.+++..++... ....+.+....++..
T Consensus 2 ~~-~~~~~~~-----~~~-----~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (646)
T KOG0039|consen 2 EG-ISFQELK-----ITD-----CSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEE 69 (646)
T ss_pred CC-cchhhhc-----ccC-----CChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhh
Confidence 45 7888888 111 1667889999999997 89999999998887653 133445556677888
Q ss_pred ccCCCCCceeHHHHHHHHhccc
Q psy164 137 AVDQDTGRIPYEYYINHIMKSE 158 (161)
Q Consensus 137 ~d~~~~g~i~~~eF~~~l~~~~ 158 (161)
.+.+..|.+.+.++...+...+
T Consensus 70 ~~~~~~~y~~~~~~~~ll~~~~ 91 (646)
T KOG0039|consen 70 LDPDHKGYITNEDLEILLLQIP 91 (646)
T ss_pred ccccccceeeecchhHHHHhch
Confidence 8888888888888777776543
No 177
>PLN02228 Phosphoinositide phospholipase C
Probab=73.01 E-value=29 Score=28.05 Aligned_cols=68 Identities=12% Similarity=0.268 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCCCCCCcHHHHHHHHHhhCCC----CCCcccHHHHHHHHHH
Q psy164 48 PTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKD----NKSYLDKEYLTKLMIE 120 (161)
Q Consensus 48 ~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~----~~g~I~~~el~~~l~~ 120 (161)
.+.+++..++..+.. ++.++.++|..++....... ....+.+..+|+.|... ..|.++.+.|..+|..
T Consensus 21 ~~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 21 EPPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGER---HAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred CCcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCc---cCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 356778888877753 34688888888777665432 13345566777766432 3467888888887754
No 178
>PRK00523 hypothetical protein; Provisional
Probab=72.54 E-value=11 Score=21.29 Aligned_cols=42 Identities=12% Similarity=0.273 Sum_probs=33.1
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhc
Q psy164 95 LKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTA 137 (161)
Q Consensus 95 ~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 137 (161)
+..|+.+= ..+-.|+.+-++.++..+|.++++..++.+.+.+
T Consensus 27 rk~~~k~l-~~NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 27 KKMFKKQI-RENPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred HHHHHHHH-HHCcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34444432 2457799999999999999999999999988776
No 179
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.63 E-value=14 Score=20.65 Aligned_cols=32 Identities=19% Similarity=0.405 Sum_probs=28.3
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q psy164 29 NKTIDCREVGTVLRALGGCPTEADIQEIIVTC 60 (161)
Q Consensus 29 ~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~ 60 (161)
+-.|+.+.++.++.+.|.+|++..++.++...
T Consensus 36 NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i 67 (71)
T COG3763 36 NPPINEEMIRMMMAQMGQKPSEKKINQVMRSI 67 (71)
T ss_pred CCCCCHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 56799999999999999999999999888765
No 180
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.73 E-value=13 Score=20.79 Aligned_cols=33 Identities=15% Similarity=0.392 Sum_probs=29.4
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhc
Q psy164 105 NKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTA 137 (161)
Q Consensus 105 ~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 137 (161)
++..|+.+-++.++..+|.++++..++++++.+
T Consensus 35 ~NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i 67 (71)
T COG3763 35 DNPPINEEMIRMMMAQMGQKPSEKKINQVMRSI 67 (71)
T ss_pred hCCCCCHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 357799999999999999999999999988765
No 181
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=70.23 E-value=20 Score=22.15 Aligned_cols=43 Identities=7% Similarity=0.086 Sum_probs=34.9
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcc
Q psy164 96 KAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAV 138 (161)
Q Consensus 96 ~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d 138 (161)
.+|-+...-++..+|.++++.+|...|..+.+..+..+++.+.
T Consensus 7 aAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~ 49 (112)
T PTZ00373 7 AAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE 49 (112)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 4455555567778999999999999999999988888888773
No 182
>PLN02222 phosphoinositide phospholipase C 2
Probab=69.88 E-value=27 Score=28.26 Aligned_cols=62 Identities=19% Similarity=0.298 Sum_probs=45.5
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHhCC--CCCHHHHHHHHHHhCC-CCCCccchhhHHHHHHH
Q psy164 16 KIADAFDIFDHAGNKTIDCREVGTVLRALGG--CPTEADIQEIIVTCEN-PEFGNIALSRFLPIVSG 79 (161)
Q Consensus 16 ~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~--~~~~~~~~~l~~~~d~-~~~~~i~~~ef~~~~~~ 79 (161)
++..+|..+-. ++.++.++|..+|..... ..+.+.++.++..+.. ...+.+++..|..++..
T Consensus 26 ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 26 EIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred HHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 55677777753 479999999999987543 3467778888887642 23567999999988864
No 183
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=68.24 E-value=14 Score=20.07 Aligned_cols=31 Identities=19% Similarity=0.133 Sum_probs=25.3
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHhhc
Q psy164 107 SYLDKEYLTKLMIEEGEPFTPEEIDEMMSTA 137 (161)
Q Consensus 107 g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 137 (161)
-.+|.+|+..++..++..++..++-.++..+
T Consensus 8 ~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 8 KKLSKEELNELINSLDEIPNRNDMLIIWNQV 38 (61)
T ss_pred HHccHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 4578889999999998888888887777665
No 184
>KOG3077|consensus
Probab=67.23 E-value=37 Score=24.41 Aligned_cols=66 Identities=11% Similarity=0.118 Sum_probs=45.8
Q ss_pred HHHHHHHHHhh-CCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhccCCCCCceeHHHHHHHHhc
Q psy164 91 AEELLKAFRTL-DKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIMK 156 (161)
Q Consensus 91 ~~~~~~~f~~~-D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 156 (161)
...+...|..| |+..+..|-.+-+.+++..+|+.+.+-.+--+.-.++...-|..+.++|+.-+..
T Consensus 63 ~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~ 129 (260)
T KOG3077|consen 63 EKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMTA 129 (260)
T ss_pred HHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHHH
Confidence 34455555554 6666679999999999999996555433333333455566789999999987654
No 185
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=66.81 E-value=15 Score=21.96 Aligned_cols=79 Identities=11% Similarity=0.031 Sum_probs=40.6
Q ss_pred CCcccHHHHHHHHHHhC----C-CCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCCCCCCcHHHHHHHHHhhCC
Q psy164 29 NKTIDCREVGTVLRALG----G-CPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDK 103 (161)
Q Consensus 29 ~g~i~~~el~~~l~~l~----~-~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~ 103 (161)
||.++..|...+.+.+. + ......+..++......- -..+..++...+...... .....-+..++.+..
T Consensus 16 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~r~~~~~~~~~ia~- 89 (111)
T cd07176 16 DGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKLLALL-RPEGLAALLKAAAKLLPP----ELRETAFAVAVDIAA- 89 (111)
T ss_pred ccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHhCCH----HHHHHHHHHHHHHHH-
Confidence 68888888777766553 2 122344444444332110 023456666666654321 122344555666664
Q ss_pred CCCCcccHHHH
Q psy164 104 DNKSYLDKEYL 114 (161)
Q Consensus 104 ~~~g~I~~~el 114 (161)
-+|.++..|-
T Consensus 90 -aDG~~~~~E~ 99 (111)
T cd07176 90 -ADGEVDPEER 99 (111)
T ss_pred -ccCCCCHHHH
Confidence 3567777653
No 186
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=66.08 E-value=29 Score=21.49 Aligned_cols=53 Identities=17% Similarity=0.213 Sum_probs=41.4
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHH
Q psy164 18 ADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLP 75 (161)
Q Consensus 18 ~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~ 75 (161)
-.+|..+...++..++.+++..+|...|..+....+..++..+. ..+..+.+.
T Consensus 6 vaAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~-----GKdI~ELIa 58 (112)
T PTZ00373 6 VAAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE-----GKTPHELIA 58 (112)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc-----CCCHHHHHH
Confidence 34566666667778999999999999999999988888888874 256666665
No 187
>PF12987 DUF3871: Domain of unknown function, B. Theta Gene description (DUF3871); InterPro: IPR024353 This entry represents proteins of unknown function found primarily in Bacteroides species. The B. thetaiotaomicron gene appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].
Probab=65.95 E-value=46 Score=24.43 Aligned_cols=65 Identities=12% Similarity=0.230 Sum_probs=46.8
Q ss_pred HHHHHHHhhCCC---------CCCcccHHHHHHHHHHc---------------CCCCCHHHHHHHHhhccCC-----CCC
Q psy164 93 ELLKAFRTLDKD---------NKSYLDKEYLTKLMIEE---------------GEPFTPEEIDEMMSTAVDQ-----DTG 143 (161)
Q Consensus 93 ~~~~~f~~~D~~---------~~g~I~~~el~~~l~~~---------------g~~~~~~~~~~~~~~~d~~-----~~g 143 (161)
.+..+|..|++. ++-+++..+|.+++-++ ...+++.++..+.+.+=.| .++
T Consensus 193 ~~leLf~~yn~~khl~lm~~L~~t~ltE~QFaQiiGR~RLYQ~LP~~~qk~lP~ll~tD~qiN~vak~Y~~d~nF~~~~~ 272 (323)
T PF12987_consen 193 KVLELFQNYNPAKHLHLMQTLGDTSLTEHQFAQIIGRMRLYQALPQGEQKRLPRLLITDSQINTVAKAYYNDENFGRKGG 272 (323)
T ss_pred HHHHHHHhcCHHHHHHHHHHhccCcccHHHHHHHHhHHHHHHhCCHhHHhhCCceecchHHHHHHHHHHhcCcccccCCC
Confidence 444455555543 57789999999998654 1347788888888875222 377
Q ss_pred ceeHHHHHHHHhcc
Q psy164 144 RIPYEYYINHIMKS 157 (161)
Q Consensus 144 ~i~~~eF~~~l~~~ 157 (161)
.|+.+.|.+.+++.
T Consensus 273 ~Is~W~~ynLlT~A 286 (323)
T PF12987_consen 273 EISMWNFYNLLTGA 286 (323)
T ss_pred cccHHHHHHHHhcc
Confidence 99999999999874
No 188
>PRK01844 hypothetical protein; Provisional
Probab=65.92 E-value=17 Score=20.47 Aligned_cols=33 Identities=21% Similarity=0.454 Sum_probs=29.6
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhc
Q psy164 105 NKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTA 137 (161)
Q Consensus 105 ~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 137 (161)
.+-.|+.+-++.++..+|.++++..++.+.+..
T Consensus 35 ~NPpine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 35 KNPPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred HCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 456799999999999999999999999988776
No 189
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=63.93 E-value=12 Score=20.31 Aligned_cols=27 Identities=7% Similarity=0.123 Sum_probs=21.4
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHH
Q psy164 108 YLDKEYLTKLMIEEGEPFTPEEIDEMM 134 (161)
Q Consensus 108 ~I~~~el~~~l~~~g~~~~~~~~~~~~ 134 (161)
.|+.++|..+|+.....++.+++...-
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~ye 55 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKYE 55 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 588999999999988888888877643
No 190
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=63.80 E-value=14 Score=29.02 Aligned_cols=89 Identities=8% Similarity=0.055 Sum_probs=56.7
Q ss_pred cCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCCC
Q psy164 7 VHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRF 86 (161)
Q Consensus 7 ~~l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~ 86 (161)
.++..+.++..-.+|..+-..+.-.|+..++..++.++|.....++--..|..-+.. ...+.|..++..+..-.
T Consensus 477 ~tl~~q~l~~~t~~f~h~lkk~~~~lsdsd~~a~l~slgl~~dk~egi~~F~~~a~s-~~gv~yl~v~~~i~sel----- 550 (612)
T COG5069 477 LTLVWQVLRSNTALFNHVLKKDGCGLSDSDLCAWLGSLGLKGDKEEGIRSFGDPAGS-VSGVFYLDVLKGIHSEL----- 550 (612)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhccccCCccceeeccCCccc-cccchHHHHHHHHhhhh-----
Confidence 345566666777778777666666799999999999999877654333333333211 22467777776665543
Q ss_pred CCCcHHHHHHHHHhhCC
Q psy164 87 QPASAEELLKAFRTLDK 103 (161)
Q Consensus 87 ~~~~~~~~~~~f~~~D~ 103 (161)
-....++..|..|+.
T Consensus 551 --~D~d~v~~~~~~f~d 565 (612)
T COG5069 551 --VDYDLVTRGFTEFDD 565 (612)
T ss_pred --cChhhhhhhHHHHHH
Confidence 334667777776643
No 191
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=63.75 E-value=9.9 Score=15.85 Aligned_cols=12 Identities=8% Similarity=0.052 Sum_probs=6.0
Q ss_pred CCCCCcccHHHH
Q psy164 103 KDNKSYLDKEYL 114 (161)
Q Consensus 103 ~~~~g~I~~~el 114 (161)
.+++|.|+.-++
T Consensus 2 vN~DG~vna~D~ 13 (21)
T PF00404_consen 2 VNGDGKVNAIDL 13 (21)
T ss_dssp TTSSSSSSHHHH
T ss_pred CCCCCcCCHHHH
Confidence 345555555444
No 192
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=63.70 E-value=22 Score=19.95 Aligned_cols=50 Identities=8% Similarity=0.062 Sum_probs=30.3
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhc
Q psy164 31 TIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISE 83 (161)
Q Consensus 31 ~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~ 83 (161)
.++...|-.++. -.++......+...|+.-..+.|+-++|+..++....+
T Consensus 8 ~~~F~~L~~~l~---~~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD 57 (70)
T PF12174_consen 8 WMPFPMLFSALS---KHLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVGD 57 (70)
T ss_pred cccHHHHHHHHH---HHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 344444444444 33445555555555544447788888888888877655
No 193
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=63.64 E-value=32 Score=21.16 Aligned_cols=43 Identities=12% Similarity=0.119 Sum_probs=34.6
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcc
Q psy164 96 KAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAV 138 (161)
Q Consensus 96 ~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d 138 (161)
.+|-+....++..+|.++++.+|...|..+.+..+..+++.+.
T Consensus 5 aAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~ 47 (109)
T cd05833 5 AAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELE 47 (109)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 3455555567778999999999999999998888888887763
No 194
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=63.63 E-value=21 Score=26.66 Aligned_cols=43 Identities=16% Similarity=0.241 Sum_probs=27.2
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHhhccCCCCCceeHHHHHHHH
Q psy164 106 KSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHI 154 (161)
Q Consensus 106 ~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 154 (161)
+|.||++|-...++......+++.++.+++..+ |+-+||.+.+
T Consensus 300 ~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 300 SGRITREEAIELVKEYDGEFPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred cCCCCHHHHHHHHHHhcccccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 566777776666666544455566666666665 6666666654
No 195
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=63.06 E-value=16 Score=24.72 Aligned_cols=37 Identities=22% Similarity=0.219 Sum_probs=24.7
Q ss_pred CCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcc
Q psy164 102 DKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAV 138 (161)
Q Consensus 102 D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d 138 (161)
..+.+|+|..++|.+.+..-+..++.+++..++..-+
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 4678999999999999988777789999999987744
No 196
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.93 E-value=18 Score=23.42 Aligned_cols=60 Identities=10% Similarity=0.178 Sum_probs=44.9
Q ss_pred HHHHHhhCCCCCCcccHHHHHH---HHHHcCCCCCHHHHHHHHhhccCCCCCceeHHHHHHHHhcc
Q psy164 95 LKAFRTLDKDNKSYLDKEYLTK---LMIEEGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIMKS 157 (161)
Q Consensus 95 ~~~f~~~D~~~~g~I~~~el~~---~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 157 (161)
-.+|++.. -+|.++..|... +++. ...++.++++.++.....-+...+++..|...|+++
T Consensus 33 ~Llf~Vm~--ADG~v~~~E~~a~r~il~~-~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~ 95 (148)
T COG4103 33 ALLFHVME--ADGTVSESEREAFRAILKE-NFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRH 95 (148)
T ss_pred HHHHHHHh--cccCcCHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 36788885 467888887544 4443 344899999999988776677789999999888754
No 197
>KOG1265|consensus
Probab=62.85 E-value=1e+02 Score=26.65 Aligned_cols=81 Identities=12% Similarity=0.258 Sum_probs=59.7
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCC-----CCCCcHHHHHHHHHhhCCC----CCC
Q psy164 37 VGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENR-----FQPASAEELLKAFRTLDKD----NKS 107 (161)
Q Consensus 37 l~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~-----~~~~~~~~~~~~f~~~D~~----~~g 107 (161)
|..++..+ .+..+++.+|..+..++.-.++..++..++.....+.+ ++......+..+...|.++ ..|
T Consensus 210 f~~~l~kl---cpR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~g 286 (1189)
T KOG1265|consen 210 FYRLLNKL---CPRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKG 286 (1189)
T ss_pred HHHHHHhc---CCchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhcc
Confidence 44444433 33468899999997666678999999999998876644 3344456788888888655 478
Q ss_pred cccHHHHHHHHHH
Q psy164 108 YLDKEYLTKLMIE 120 (161)
Q Consensus 108 ~I~~~el~~~l~~ 120 (161)
-|+.+-|...|+.
T Consensus 287 qms~dgf~ryl~g 299 (1189)
T KOG1265|consen 287 QMSTDGFVRYLMG 299 (1189)
T ss_pred ccchhhhHHHhhC
Confidence 8999999888875
No 198
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=62.10 E-value=30 Score=20.26 Aligned_cols=51 Identities=14% Similarity=0.065 Sum_probs=23.7
Q ss_pred CccchhhHHHHHHHhhhcCCCCCCcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHc
Q psy164 66 GNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEE 121 (161)
Q Consensus 66 ~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~ 121 (161)
-.|.+.+|...+....+. ....+....=..+|...+|+||.=||--+.+-+
T Consensus 21 ~IVPW~~F~~~L~~~h~~-----~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRlF 71 (85)
T PF02761_consen 21 TIVPWSEFRQALQKVHPI-----SSGLEAMALKSTIDLTCNDYISNFEFDVFTRLF 71 (85)
T ss_dssp SEEEHHHHHHHHHHHS-------SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHHT
T ss_pred eEeeHHHHHHHHHHhcCC-----CchHHHHHHHHHHhcccCCccchhhhHHHHHHH
Confidence 446666666666554332 222222222234455666666666655444433
No 199
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=61.53 E-value=16 Score=24.63 Aligned_cols=108 Identities=19% Similarity=0.174 Sum_probs=65.8
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCC--C-CCCccchhhHHHHHH-Hhhhc-----C
Q psy164 14 EKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCEN--P-EFGNIALSRFLPIVS-GMISE-----N 84 (161)
Q Consensus 14 ~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~--~-~~~~i~~~ef~~~~~-~~~~~-----~ 84 (161)
.+.++++|..||...--..+.+++..++..-++--+...++.++..... . ... +|..|+-.+. ..... .
T Consensus 52 r~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi~NA~~~l~i~~e--sf~~ylW~fv~~~Pi~~~~~~~ 129 (179)
T TIGR00624 52 RENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATIANARAALQLEQN--DLVEFLWSFVNHQPQPRQRPTD 129 (179)
T ss_pred HHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHHHc--cHHHHHHhccCCCCccCCcccc
Confidence 4578899999999888888999999998876665555445443331100 0 011 6777774442 11100 0
Q ss_pred CCCCCcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCC
Q psy164 85 RFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGE 123 (161)
Q Consensus 85 ~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~ 123 (161)
...+........+.+.+-+.|-..+-+.-...+|...|.
T Consensus 130 ~~~p~~t~~S~~lskdLKkrGfkFvGpt~~ysfmqA~G~ 168 (179)
T TIGR00624 130 SEIPSSTPESKAMSKELKKRGFRFVGPTICYALMQATGM 168 (179)
T ss_pred ccCCCCCHHHHHHHHHHHHcCCeecChHHHHHHHHHHCC
Confidence 011223344566666666777777877777888877774
No 200
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=61.52 E-value=36 Score=22.25 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q psy164 10 TNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRA 43 (161)
Q Consensus 10 ~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~ 43 (161)
...++..+.......|..+.+++|.++++.++-.
T Consensus 64 ~~~~Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~ 97 (148)
T PF12486_consen 64 GMTQLQQLADRLNQLEEQRGKYMTISELKTAVYQ 97 (148)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceeHHHHHHHHHH
Confidence 3456778888888889988889999999988753
No 201
>PF13551 HTH_29: Winged helix-turn helix
Probab=61.35 E-value=32 Score=20.44 Aligned_cols=51 Identities=12% Similarity=0.184 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHH--HHhCCCCCHHHHHHHHHH
Q psy164 9 ITNDFEKKIADAFDIFDHAGNKTIDCREVGTVL--RALGGCPTEADIQEIIVT 59 (161)
Q Consensus 9 l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l--~~l~~~~~~~~~~~l~~~ 59 (161)
+++++.+.+.+.+...-.++....+...+...+ ...|..++...+..++..
T Consensus 58 l~~~~~~~l~~~~~~~p~~g~~~~t~~~l~~~l~~~~~~~~~s~~ti~r~L~~ 110 (112)
T PF13551_consen 58 LSEEQRAQLIELLRENPPEGRSRWTLEELAEWLIEEEFGIDVSPSTIRRILKR 110 (112)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCcccHHHHHHHHHHhccCccCCHHHHHHHHHH
Confidence 788888888887776554433468888888754 345778888888877754
No 202
>PLN02230 phosphoinositide phospholipase C 4
Probab=61.23 E-value=62 Score=26.41 Aligned_cols=64 Identities=13% Similarity=0.223 Sum_probs=44.3
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhCC---CCCHHHHHHHHHHhCC-------CCCCccchhhHHHHHHH
Q psy164 15 KKIADAFDIFDHAGNKTIDCREVGTVLRALGG---CPTEADIQEIIVTCEN-------PEFGNIALSRFLPIVSG 79 (161)
Q Consensus 15 ~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~---~~~~~~~~~l~~~~d~-------~~~~~i~~~ef~~~~~~ 79 (161)
.+++.+|..+-.+ ++.++.++|..+|..-.. ..+.+.+..++..+-. -..+.+++..|..++..
T Consensus 29 ~ei~~lf~~~s~~-~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 29 ADVRDLFEKYADG-DAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred HHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 4678888888544 489999999999987642 2355666666654321 12346899999887754
No 203
>PF06569 DUF1128: Protein of unknown function (DUF1128); InterPro: IPR009507 This family consists of several short, hypothetical bacterial proteins of unknown function.
Probab=60.94 E-value=19 Score=20.23 Aligned_cols=37 Identities=11% Similarity=0.294 Sum_probs=19.4
Q ss_pred cCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhC
Q psy164 7 VHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALG 45 (161)
Q Consensus 7 ~~l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~ 45 (161)
..++.++.++|+.+|..--. .+..++.|+..+...||
T Consensus 31 ~~f~~~~yedl~diy~~V~~--K~~fS~sEm~aI~~ELG 67 (71)
T PF06569_consen 31 EDFSEEKYEDLKDIYEMVMS--KDSFSPSEMQAIAEELG 67 (71)
T ss_pred HhCChhhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHH
Confidence 34555555555555554443 34555566555555544
No 204
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=60.85 E-value=33 Score=20.35 Aligned_cols=81 Identities=10% Similarity=0.073 Sum_probs=43.0
Q ss_pred CCcccHHHHHH---HHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCCCCCCcHHHHHHHHHhhCCCC
Q psy164 29 NKTIDCREVGT---VLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDN 105 (161)
Q Consensus 29 ~g~i~~~el~~---~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~ 105 (161)
||.++..|... ++..+. ........+...+........++.+|...+....... +.....-+..+|.+.- -
T Consensus 13 DG~v~~~E~~~i~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~r~~~l~~l~~vA~--A 86 (106)
T cd07316 13 DGRVSEAEIQAARALMDQMG--LDAEARREAIRLFNEGKESDFGLEEYARQFRRACGGR--PELLLQLLEFLFQIAY--A 86 (106)
T ss_pred cCCcCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHH--H
Confidence 78888877544 444433 3333334444433322222367888888877643110 0022345666676663 3
Q ss_pred CCcccHHHHH
Q psy164 106 KSYLDKEYLT 115 (161)
Q Consensus 106 ~g~I~~~el~ 115 (161)
+|.+++.|-.
T Consensus 87 DG~~~~~E~~ 96 (106)
T cd07316 87 DGELSEAERE 96 (106)
T ss_pred cCCCCHHHHH
Confidence 5788887754
No 205
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=60.43 E-value=15 Score=20.18 Aligned_cols=37 Identities=14% Similarity=0.228 Sum_probs=31.4
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhccCCC
Q psy164 105 NKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQD 141 (161)
Q Consensus 105 ~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~ 141 (161)
.++.++...+.+.|...|+.++++.+...++.++.++
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 4578999999999999899999999988888887654
No 206
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=60.29 E-value=10 Score=21.82 Aligned_cols=43 Identities=28% Similarity=0.440 Sum_probs=25.4
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcc
Q psy164 92 EELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAV 138 (161)
Q Consensus 92 ~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d 138 (161)
..++.+...- ...|+||.+++..+|.... ++++.+..++..+.
T Consensus 7 ~~i~~Li~~g--K~~G~lT~~eI~~~L~~~~--~~~e~id~i~~~L~ 49 (82)
T PF03979_consen 7 EAIKKLIEKG--KKKGYLTYDEINDALPEDD--LDPEQIDEIYDTLE 49 (82)
T ss_dssp HHHHHHHHHH--HHHSS-BHHHHHHH-S-S-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hhcCcCCHHHHHHHcCccC--CCHHHHHHHHHHHH
Confidence 3444444443 2478999999999998554 88888888877653
No 207
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=60.13 E-value=33 Score=20.10 Aligned_cols=51 Identities=8% Similarity=0.046 Sum_probs=37.9
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHh
Q psy164 30 KTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGM 80 (161)
Q Consensus 30 g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 80 (161)
..||.+||...-+..|++++.++++.++.......-+.++-++=..++...
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkei 63 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEI 63 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 358899999999999999999999999888864444445555544454443
No 208
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=59.36 E-value=29 Score=23.42 Aligned_cols=37 Identities=14% Similarity=0.206 Sum_probs=30.5
Q ss_pred CCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcc
Q psy164 102 DKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAV 138 (161)
Q Consensus 102 D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d 138 (161)
..|.+|++..++|.+.+..-+..++.+++.+++..-|
T Consensus 27 ~ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~ 63 (179)
T PRK00819 27 TLDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDD 63 (179)
T ss_pred ccCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCC
Confidence 4578999999999999887666789999998887654
No 209
>KOG4004|consensus
Probab=58.66 E-value=5 Score=27.45 Aligned_cols=50 Identities=12% Similarity=0.024 Sum_probs=35.2
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhccCCCCCceeHHHHHHHHh
Q psy164 104 DNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIM 155 (161)
Q Consensus 104 ~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 155 (161)
..+|++|..||.-+-.. .-..+.-...++...|.|+||.|+.+||-..+-
T Consensus 200 p~d~~~sh~el~pl~ap--~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~g 249 (259)
T KOG4004|consen 200 PIDGYLSHTELAPLRAP--LIPMEHCTTRFFETCDLDNDKYIALDEWAGCFG 249 (259)
T ss_pred CccccccccccccccCC--cccHHhhchhhhhcccCCCCCceeHHHhhcccC
Confidence 46899988877532211 112233467788999999999999999987654
No 210
>PRK14074 rpsF 30S ribosomal protein S6; Provisional
Probab=57.31 E-value=28 Score=24.62 Aligned_cols=71 Identities=10% Similarity=0.082 Sum_probs=51.5
Q ss_pred ccCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHH
Q psy164 6 EVHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSG 79 (161)
Q Consensus 6 ~~~l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 79 (161)
+.+|++.|.+.+-+-|...=.+..|.+-..|.+-++..-.-.++..+++.--... ....|-|++|+.-+..
T Consensus 11 ~q~ls~~q~e~l~e~~~~~l~~~~~~v~~~e~wG~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 81 (257)
T PRK14074 11 QQGLLQQEVEEMVQELAVLLKNIKADVMFQQIKGILEKGNDKLTKQELEVRAEDI---KESLIAYSDFLEDLTK 81 (257)
T ss_pred cccccHHHHHHHHHHHHHHHHhcCCeeehhhhhhhhhcccchhhHHHHHhhHHHH---HHHHHHHHHHHHHHHH
Confidence 4679999999999999888888899999999998877655566665554322222 1345778888776544
No 211
>KOG4004|consensus
Probab=57.18 E-value=4.1 Score=27.87 Aligned_cols=59 Identities=17% Similarity=0.137 Sum_probs=41.9
Q ss_pred HHhhCCC-CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhh
Q psy164 21 FDIFDHA-GNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMI 81 (161)
Q Consensus 21 f~~~D~~-~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~ 81 (161)
|-.+|.. -+|+++..|+.-+-. -+-|-+.=+...+...|.+.+|.|+..+|..+++...
T Consensus 193 f~qld~~p~d~~~sh~el~pl~a--p~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~gikq 252 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLRA--PLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGIKQ 252 (259)
T ss_pred eccccCCCccccccccccccccC--CcccHHhhchhhhhcccCCCCCceeHHHhhcccCcch
Confidence 3455654 488999888765422 1223344567789999999999999999998887653
No 212
>KOG4286|consensus
Probab=56.95 E-value=1.1e+02 Score=25.85 Aligned_cols=97 Identities=9% Similarity=0.165 Sum_probs=65.1
Q ss_pred HHHHHHHhCCCCCCccchhhHHHHHHHhhhcCCCCCCcHHHHHHHHHhhCCCCCCcccHHHHHHHHH-------HcC---
Q psy164 53 IQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMI-------EEG--- 122 (161)
Q Consensus 53 ~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~-------~~g--- 122 (161)
+.-++..||...+|.|..-+|.-.+..+... ...+.++.+|.....+++-.+ ...|...|. .+|
T Consensus 472 lN~llNvyD~~R~g~irvls~ki~~i~lck~-----~leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~a 545 (966)
T KOG4286|consen 472 LNWLLNVYDTGRTGRIRVLSFKIGIISLCKA-----HLEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVA 545 (966)
T ss_pred HHHHHHhcccCCCcceEEeeehhhHHHHhcc-----hhHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHH
Confidence 3567788998889999999988777766554 667889999999865555444 444444443 333
Q ss_pred ----CCCCHHHHHHHHhhccCCCCCceeHHHHHHHHhccc
Q psy164 123 ----EPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIMKSE 158 (161)
Q Consensus 123 ----~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~ 158 (161)
.++.+ -+...|. ..++...|+...|+.++..-|
T Consensus 546 AfGgsNvep-svrsCF~--~v~~~pei~~~~f~dw~~~ep 582 (966)
T KOG4286|consen 546 AFGGSNIEP-SVRSCFQ--FVNNKPEIEAALFLDWMRLEP 582 (966)
T ss_pred hhcCCCCCh-HHHHHHH--hcCCCCcchHHHHHHHhccCc
Confidence 23333 2444455 345667899999999887544
No 213
>KOG1954|consensus
Probab=55.29 E-value=20 Score=27.45 Aligned_cols=56 Identities=16% Similarity=0.151 Sum_probs=43.5
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhccCCCCCceeHHHHH
Q psy164 93 ELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRIPYEYYI 151 (161)
Q Consensus 93 ~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~ 151 (161)
....+|-.+.+ -+|+|+-..-+..+-.. +++...+..+++.+|.|.||.++-+||.
T Consensus 445 ~yde~fy~l~p-~~gk~sg~~ak~~mv~s--klpnsvlgkiwklad~d~dg~ld~eefa 500 (532)
T KOG1954|consen 445 TYDEIFYTLSP-VNGKLSGRNAKKEMVKS--KLPNSVLGKIWKLADIDKDGMLDDEEFA 500 (532)
T ss_pred chHhhhhcccc-cCceeccchhHHHHHhc--cCchhHHHhhhhhhcCCcccCcCHHHHH
Confidence 35556666643 47888888777666543 4777789999999999999999999995
No 214
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=55.15 E-value=21 Score=22.16 Aligned_cols=30 Identities=17% Similarity=0.296 Sum_probs=24.5
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHhhcc
Q psy164 109 LDKEYLTKLMIEEGEPFTPEEIDEMMSTAV 138 (161)
Q Consensus 109 I~~~el~~~l~~~g~~~~~~~~~~~~~~~d 138 (161)
-|..|++.++..-+..++++++++++...+
T Consensus 80 ~t~~ElRsIla~e~~~~s~E~l~~Ildiv~ 109 (114)
T COG1460 80 RTPDELRSILAKERVMLSDEELDKILDIVD 109 (114)
T ss_pred CCHHHHHHHHHHccCCCCHHHHHHHHHHHH
Confidence 467889999999888899999988876543
No 215
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=54.82 E-value=28 Score=17.60 Aligned_cols=39 Identities=18% Similarity=0.254 Sum_probs=25.7
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhhccCCCCCceeHHHHHHH
Q psy164 111 KEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINH 153 (161)
Q Consensus 111 ~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 153 (161)
.+|...+|..+| .++.++...+..... ...++-++.++.
T Consensus 3 ~~d~~~AL~~LG--y~~~e~~~av~~~~~--~~~~~~e~~ik~ 41 (47)
T PF07499_consen 3 LEDALEALISLG--YSKAEAQKAVSKLLE--KPGMDVEELIKQ 41 (47)
T ss_dssp HHHHHHHHHHTT--S-HHHHHHHHHHHHH--STTS-HHHHHHH
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHhhc--CCCCCHHHHHHH
Confidence 357788888888 788888888888754 334555665543
No 216
>PHA02105 hypothetical protein
Probab=54.36 E-value=33 Score=18.36 Aligned_cols=52 Identities=15% Similarity=0.092 Sum_probs=32.9
Q ss_pred cccHHHHHHHHHHcC---CCCCHHHHHHHHhhccCCCC--CceeHHHHHHHHhcccc
Q psy164 108 YLDKEYLTKLMIEEG---EPFTPEEIDEMMSTAVDQDT--GRIPYEYYINHIMKSEE 159 (161)
Q Consensus 108 ~I~~~el~~~l~~~g---~~~~~~~~~~~~~~~d~~~~--g~i~~~eF~~~l~~~~~ 159 (161)
.++++|++.++.... .++..+.++.+-.-+....- -.+||+||...|--+|.
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~p~ip~ 60 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIMPFIPR 60 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhccccccccc
Confidence 367778888776642 45556666666555554433 36889999877655443
No 217
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=54.12 E-value=51 Score=20.45 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=32.9
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcc
Q psy164 97 AFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAV 138 (161)
Q Consensus 97 ~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d 138 (161)
+|-+.-..++..+|.++++.+|...|..+.+..+..+++.+.
T Consensus 6 Ayll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~ 47 (113)
T PLN00138 6 AYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVK 47 (113)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc
Confidence 344444456677999999999999999888888888877763
No 218
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=54.06 E-value=50 Score=20.33 Aligned_cols=57 Identities=14% Similarity=0.216 Sum_probs=43.7
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHh
Q psy164 19 DAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGM 80 (161)
Q Consensus 19 ~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 80 (161)
.+|..+...++..++.+++..+|+..|..+....+..++..+. ..+..+.+..-...
T Consensus 5 aAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~-----GKdi~eLIa~g~~k 61 (109)
T cd05833 5 AAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELE-----GKDVEELIAAGKEK 61 (109)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc-----CCCHHHHHHHhHhh
Confidence 3455666667778999999999999999998888888887773 25677777755543
No 219
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=53.30 E-value=24 Score=16.50 Aligned_cols=19 Identities=16% Similarity=0.104 Sum_probs=13.6
Q ss_pred cccHHHHHHHHHHcCCCCC
Q psy164 108 YLDKEYLTKLMIEEGEPFT 126 (161)
Q Consensus 108 ~I~~~el~~~l~~~g~~~~ 126 (161)
.++..+|++.+...|.+.+
T Consensus 3 ~l~~~~Lk~~l~~~gl~~~ 21 (35)
T smart00513 3 KLKVSELKDELKKRGLSTS 21 (35)
T ss_pred cCcHHHHHHHHHHcCCCCC
Confidence 4677788888888776543
No 220
>KOG0843|consensus
Probab=53.08 E-value=51 Score=22.34 Aligned_cols=45 Identities=20% Similarity=0.256 Sum_probs=33.9
Q ss_pred ccCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHH
Q psy164 6 EVHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEII 57 (161)
Q Consensus 6 ~~~l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~ 57 (161)
++.+|++|+..|...|. +++|+...|=..+.+.|++. +.+++-.|
T Consensus 106 RT~ft~~Ql~~LE~~F~-----~~~Yvvg~eR~~LA~~L~Ls--etQVkvWF 150 (197)
T KOG0843|consen 106 RTAFTPEQLLKLEHAFE-----GNQYVVGAERKQLAQSLSLS--ETQVKVWF 150 (197)
T ss_pred ccccCHHHHHHHHHHHh-----cCCeeechHHHHHHHHcCCC--hhHhhhhh
Confidence 46799999999999887 57788888877777777654 55555444
No 221
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=53.07 E-value=28 Score=18.04 Aligned_cols=32 Identities=6% Similarity=0.114 Sum_probs=24.0
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhccCCC
Q psy164 105 NKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQD 141 (161)
Q Consensus 105 ~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~ 141 (161)
..|.|+..+|+..+ | ++-.-+-.+++.+|..+
T Consensus 7 ~~~~itv~~~rd~l---g--~sRK~ai~lLE~lD~~g 38 (50)
T PF09107_consen 7 KNGEITVAEFRDLL---G--LSRKYAIPLLEYLDREG 38 (50)
T ss_dssp TTSSBEHHHHHHHH---T--S-HHHHHHHHHHHHHTT
T ss_pred cCCcCcHHHHHHHH---C--ccHHHHHHHHHHHhccC
Confidence 37899999999888 5 67777777787777543
No 222
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=52.34 E-value=32 Score=22.08 Aligned_cols=49 Identities=14% Similarity=0.258 Sum_probs=38.6
Q ss_pred CCCcccHHHHHHHHHHcC---------CCCCHHHHHHHHhhccCCCCC-ceeHHHHHHH
Q psy164 105 NKSYLDKEYLTKLMIEEG---------EPFTPEEIDEMMSTAVDQDTG-RIPYEYYINH 153 (161)
Q Consensus 105 ~~g~I~~~el~~~l~~~g---------~~~~~~~~~~~~~~~d~~~~g-~i~~~eF~~~ 153 (161)
|+-.||.+||.++...-. ..++++++..+.+.+...+.+ .+++.|-++.
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 677899999999998631 458999999999998776555 4888887664
No 223
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=51.98 E-value=20 Score=16.84 Aligned_cols=19 Identities=21% Similarity=0.146 Sum_probs=12.9
Q ss_pred cccHHHHHHHHHHcCCCCC
Q psy164 108 YLDKEYLTKLMIEEGEPFT 126 (161)
Q Consensus 108 ~I~~~el~~~l~~~g~~~~ 126 (161)
.++..|++..|...|.+.+
T Consensus 3 ~l~v~eLk~~l~~~gL~~~ 21 (35)
T PF02037_consen 3 KLTVAELKEELKERGLSTS 21 (35)
T ss_dssp TSHHHHHHHHHHHTTS-ST
T ss_pred cCcHHHHHHHHHHCCCCCC
Confidence 4567788888888776543
No 224
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=51.92 E-value=49 Score=19.64 Aligned_cols=32 Identities=9% Similarity=0.061 Sum_probs=24.7
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHcCCC
Q psy164 93 ELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEP 124 (161)
Q Consensus 93 ~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~ 124 (161)
-.+.+-......+.-+|..+|+..+++..|..
T Consensus 56 i~~~A~~~A~ha~RKTV~~~DI~la~~~~~~~ 87 (91)
T COG2036 56 IAEDAVELAEHAKRKTVKAEDIKLALKRLGRR 87 (91)
T ss_pred HHHHHHHHHHHcCCCeecHHHHHHHHHHhccc
Confidence 44555666667788999999999999988743
No 225
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=51.78 E-value=31 Score=17.27 Aligned_cols=30 Identities=20% Similarity=0.361 Sum_probs=20.9
Q ss_pred HHHHHHHHHhhCC-C-CCCcccHHHHHHHHHH
Q psy164 14 EKKIADAFDIFDH-A-GNKTIDCREVGTVLRA 43 (161)
Q Consensus 14 ~~~l~~~f~~~D~-~-~~g~i~~~el~~~l~~ 43 (161)
+..+-.+|..+.. + +...|+..||+.++..
T Consensus 5 i~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 5 IETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 4456677877752 2 3568899999988864
No 226
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=51.31 E-value=34 Score=21.09 Aligned_cols=27 Identities=26% Similarity=0.562 Sum_probs=15.4
Q ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHhh
Q psy164 110 DKEYLTKLMIEEGEPFTPEEIDEMMST 136 (161)
Q Consensus 110 ~~~el~~~l~~~g~~~~~~~~~~~~~~ 136 (161)
+.+|++.++......+++++++.++..
T Consensus 80 ~~dElrai~~~~~~~~~~e~l~~ILd~ 106 (112)
T PRK14981 80 TRDELRAIFAKERYTLSPEELDEILDI 106 (112)
T ss_pred CHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 355556655555555666666665544
No 227
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=49.72 E-value=31 Score=17.47 Aligned_cols=21 Identities=38% Similarity=0.487 Sum_probs=17.7
Q ss_pred cHHHHHHHHHHcCCCCCHHHH
Q psy164 110 DKEYLTKLMIEEGEPFTPEEI 130 (161)
Q Consensus 110 ~~~el~~~l~~~g~~~~~~~~ 130 (161)
+.+++..+....|+.+|.+++
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHHh
Confidence 677888888999999998775
No 228
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=49.00 E-value=32 Score=19.77 Aligned_cols=43 Identities=23% Similarity=0.426 Sum_probs=31.4
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCC-CCccchhhHHHHH
Q psy164 33 DCREVGTVLRALGGCPTEADIQEIIVTCENPE-FGNIALSRFLPIV 77 (161)
Q Consensus 33 ~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~-~~~i~~~ef~~~~ 77 (161)
+..++...|. |.+.+.+.+...+..++... -+.++-++++.++
T Consensus 43 ~i~~le~~L~--G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 43 DIEELEEALI--GCPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp CHHHHHHHHT--TCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHHHH--hcCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 3567777663 77888888998888875443 4678888888764
No 229
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=48.96 E-value=43 Score=22.25 Aligned_cols=48 Identities=21% Similarity=0.220 Sum_probs=29.6
Q ss_pred CcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhc
Q psy164 89 ASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTA 137 (161)
Q Consensus 89 ~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 137 (161)
.....+..+++.+-..+...++..+|...+-- |..+|++++...+..+
T Consensus 82 kt~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~cGV-GV~VT~E~I~~~V~~~ 129 (164)
T PF04558_consen 82 KTNLQLDAALKYLKSNPSEPIDVAEFEKACGV-GVVVTPEQIEAAVEKY 129 (164)
T ss_dssp -SHHHHHHHHHHHHHHGG-G--HHHHHHTTTT-T----HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCCCHHHHHHHcCC-CeEECHHHHHHHHHHH
Confidence 45677888888886555567999999877633 6778999988776664
No 230
>KOG0506|consensus
Probab=48.72 E-value=43 Score=26.44 Aligned_cols=60 Identities=10% Similarity=0.141 Sum_probs=42.9
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHH---hCC----CC-CCccchhhHHHHHHH
Q psy164 20 AFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVT---CEN----PE-FGNIALSRFLPIVSG 79 (161)
Q Consensus 20 ~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~---~d~----~~-~~~i~~~ef~~~~~~ 79 (161)
+|..+-...++.++...|..+|++.|+--+++-+..+++. ++. +. .+.++-+.|..++..
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~s 158 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFS 158 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhcc
Confidence 6777766667999999999999999997776666666543 332 11 356777777776643
No 231
>PF13331 DUF4093: Domain of unknown function (DUF4093)
Probab=48.49 E-value=39 Score=19.81 Aligned_cols=28 Identities=29% Similarity=0.323 Sum_probs=22.5
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHH
Q psy164 105 NKSYLDKEYLTKLMIEEGEPFTPEEIDEMM 134 (161)
Q Consensus 105 ~~g~I~~~el~~~l~~~g~~~~~~~~~~~~ 134 (161)
+=|+.+-.+|.+.|..+| +|.+++...+
T Consensus 59 ~iGy~N~KqllkrLN~f~--it~~e~~~al 86 (87)
T PF13331_consen 59 GIGYGNAKQLLKRLNMFG--ITREEFEEAL 86 (87)
T ss_pred CCCCCCHHHHHHHHHHcC--CCHHHHHHHh
Confidence 448888888888888888 8888887765
No 232
>PRK08181 transposase; Validated
Probab=47.84 E-value=69 Score=23.15 Aligned_cols=49 Identities=16% Similarity=0.179 Sum_probs=33.8
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHh
Q psy164 29 NKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGM 80 (161)
Q Consensus 29 ~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 80 (161)
...|+...+...|+.++++--.+.+..+.... ..+..+|.+|+..+...
T Consensus 4 ~~~~~~~~l~~~l~~LkL~~~~~~~~~~~~~a---~~~~~~~~e~L~~ll~~ 52 (269)
T PRK08181 4 TNVIDEARLGLLLNELRLPTIKTLWPQFAEQA---DKEGWPAARFLAAIAEH 52 (269)
T ss_pred CCcccHHHHHHHHHHcCchHHHHHHHHHHHHH---hhcCCCHHHHHHHHHHH
Confidence 45678888999999988764444455544433 24568999999887543
No 233
>PF04963 Sigma54_CBD: Sigma-54 factor, core binding domain; InterPro: IPR007046 This domain makes a direct interaction with the core RNA polymerase, to form an enhancer dependent holoenzyme []. The centre of this domain contains a very weak similarity to a helix-turn-helix motif, which may represent a DNA binding domain.; GO: 0003677 DNA binding, 0006352 transcription initiation, DNA-dependent; PDB: 2K9L_A 2K9M_A.
Probab=47.50 E-value=55 Score=22.27 Aligned_cols=90 Identities=13% Similarity=0.128 Sum_probs=33.3
Q ss_pred CCCCCcccHHHHHHHHHHhCCCCCHHHH---HHHHHHhCCCCCCccchhhHHHHHHHhhhcCCCCCCcHHHHHHHHHhhC
Q psy164 26 HAGNKTIDCREVGTVLRALGGCPTEADI---QEIIVTCENPEFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLD 102 (161)
Q Consensus 26 ~~~~g~i~~~el~~~l~~l~~~~~~~~~---~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~f~~~D 102 (161)
-|.+|+++. .+..+...++ ++.+++ -.+++.+++-|=|.=++.|.+.+-...... .......++..+..+-
T Consensus 45 LD~~GyL~~-~~~eia~~l~--~~~~~v~~~l~~lQ~leP~GigAr~l~EcLllQl~~~~~---~~~~~~il~~~l~~l~ 118 (194)
T PF04963_consen 45 LDDDGYLTE-SLEEIAEELG--VSEEEVEKALELLQSLEPAGIGARDLQECLLLQLERKGP---PDLAYRILENHLELLA 118 (194)
T ss_dssp BTTTSTCSS--HHHHHHHCT--S-HHHHHHHHHHHHTTSS--TTTS-TTHHHHHHHHHS-S-----TTHHHHHHHHHHHH
T ss_pred CCCCCccCC-CHHHHHHHhC--CCHHHHHHHHHHHHcCCCCccCcCCHHHHHHHHHhccCC---cHHHHHHHHHHHHHHH
Confidence 356888773 3334445555 444444 455677888777777777755433222111 1233444455554442
Q ss_pred CC------CCCcccHHHHHHHHHHc
Q psy164 103 KD------NKSYLDKEYLTKLMIEE 121 (161)
Q Consensus 103 ~~------~~g~I~~~el~~~l~~~ 121 (161)
.. +.=.++.++++.++..+
T Consensus 119 ~~~~~~ia~~l~~s~~~v~~~~~~I 143 (194)
T PF04963_consen 119 NKDYKKIAKKLGISEEEVQEAIELI 143 (194)
T ss_dssp H------------------------
T ss_pred Hhhhccccccccccccccccccccc
Confidence 11 12235666666666543
No 234
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=47.27 E-value=18 Score=21.90 Aligned_cols=51 Identities=12% Similarity=0.136 Sum_probs=28.5
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHH---HHHHhhccCCCCCceeHHHHHHHHhccccC
Q psy164 107 SYLDKEYLTKLMIEEGEPFTPEEI---DEMMSTAVDQDTGRIPYEYYINHIMKSEER 160 (161)
Q Consensus 107 g~I~~~el~~~l~~~g~~~~~~~~---~~~~~~~d~~~~g~i~~~eF~~~l~~~~~~ 160 (161)
-.+|.+++..++..+| + ..-+ ...++..+.+....++-++.+..|..+|..
T Consensus 34 ~p~s~~eL~~~l~~~g--~-~~li~~~~~~yk~l~l~~~~~~s~~e~~~~l~~~p~L 87 (105)
T cd03035 34 DGLDAATLERWLAKVG--W-ETLLNKRGTTWRKLDDAQKAALDAAKAIALMLEHPSL 87 (105)
T ss_pred CCCCHHHHHHHHHHhC--h-HHHHccCchHHHhCChhhhccCCHHHHHHHHHhCcCe
Confidence 4577777877777766 1 1111 112232322222346778888888887754
No 235
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=47.22 E-value=92 Score=21.43 Aligned_cols=78 Identities=12% Similarity=0.066 Sum_probs=45.9
Q ss_pred CCCCccchhhHHHHHHHhhhcCCCCCCcHHHHHHHHHhhCCCCCCcccHHH-HHHHHHHcCCCCCHHHHHH-HHhhccCC
Q psy164 63 PEFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEY-LTKLMIEEGEPFTPEEIDE-MMSTAVDQ 140 (161)
Q Consensus 63 ~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e-l~~~l~~~g~~~~~~~~~~-~~~~~d~~ 140 (161)
+-+|+|+.+++...+...... .+.+.+++.. -+++||..+ |..++..++. +.+|+-+ +.+.+-.+
T Consensus 9 DFDGTITl~Ds~~~itdtf~~--------~e~k~l~~~v---ls~tiS~rd~~g~mf~~i~~--s~~Eile~llk~i~Id 75 (220)
T COG4359 9 DFDGTITLNDSNDYITDTFGP--------GEWKALKDGV---LSKTISFRDGFGRMFGSIHS--SLEEILEFLLKDIKID 75 (220)
T ss_pred cCCCceEecchhHHHHhccCc--------hHHHHHHHHH---hhCceeHHHHHHHHHHhcCC--CHHHHHHHHHhhcccC
Confidence 447999999999988876433 3444444433 467777654 6666666664 3344444 34334333
Q ss_pred CCCceeHHHHHHHHhcc
Q psy164 141 DTGRIPYEYYINHIMKS 157 (161)
Q Consensus 141 ~~g~i~~~eF~~~l~~~ 157 (161)
=.+.+|++++..+
T Consensus 76 ----p~fKef~e~ike~ 88 (220)
T COG4359 76 ----PGFKEFVEWIKEH 88 (220)
T ss_pred ----ccHHHHHHHHHHc
Confidence 2466777766543
No 236
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=47.19 E-value=68 Score=19.90 Aligned_cols=52 Identities=13% Similarity=0.319 Sum_probs=38.4
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHH
Q psy164 19 DAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLP 75 (161)
Q Consensus 19 ~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~ 75 (161)
.+|..+-..++..++.+++..+|...|..+....+..++..+. | .+..+.+.
T Consensus 5 aAyll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~----g-K~i~eLIa 56 (113)
T PLN00138 5 AAYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVK----G-KDITELIA 56 (113)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc----C-CCHHHHHH
Confidence 3455555556777999999999999999988888888877773 2 45666554
No 237
>KOG1785|consensus
Probab=47.08 E-value=1.3e+02 Score=23.24 Aligned_cols=83 Identities=13% Similarity=0.112 Sum_probs=50.2
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCCCCCCcHHHHHHHHHhhCCCCCCc-
Q psy164 30 KTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSY- 108 (161)
Q Consensus 30 g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~- 108 (161)
-.++...|+++|.......+.-++-.+-...|...++.|+--||=.+-+.+ .....+.+-|+.+...+.|+
T Consensus 189 ~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEFDvFTRLF--------qPw~tllkNWq~LavtHPGYm 260 (563)
T KOG1785|consen 189 TIVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEFDVFTRLF--------QPWKTLLKNWQTLAVTHPGYM 260 (563)
T ss_pred ccccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceeeehhhhHHHhh--------ccHHHHHHhhhhhhccCCcee
Confidence 346666677777654332223344455566676777777766665554443 33455666677777777776
Q ss_pred --ccHHHHHHHHHH
Q psy164 109 --LDKEYLTKLMIE 120 (161)
Q Consensus 109 --I~~~el~~~l~~ 120 (161)
++-+|++.-|..
T Consensus 261 AFLTYDEVk~RLqk 274 (563)
T KOG1785|consen 261 AFLTYDEVKARLQK 274 (563)
T ss_pred EEeeHHHHHHHHHH
Confidence 567777766654
No 238
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=46.59 E-value=49 Score=18.47 Aligned_cols=47 Identities=26% Similarity=0.260 Sum_probs=27.8
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHc----CCCCCHHHHHHHHhhcc
Q psy164 92 EELLKAFRTLDKDNKSYLDKEYLTKLMIEE----GEPFTPEEIDEMMSTAV 138 (161)
Q Consensus 92 ~~~~~~f~~~D~~~~g~I~~~el~~~l~~~----g~~~~~~~~~~~~~~~d 138 (161)
..+..+...++....--+-..+++.++..+ |...+++-++.+|..|+
T Consensus 23 ~~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~FC 73 (73)
T PF12631_consen 23 EHLEDALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFSNFC 73 (73)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS-
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhhC
Confidence 455556666654333345556777777764 67777888888888763
No 239
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=46.41 E-value=72 Score=22.80 Aligned_cols=48 Identities=10% Similarity=0.128 Sum_probs=34.1
Q ss_pred cCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q psy164 7 VHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTC 60 (161)
Q Consensus 7 ~~l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~ 60 (161)
.+||-.+++.+++++..++.+ +|.++..++..- +|+ +...+...++.+
T Consensus 175 ~tLSySEleAv~~IL~~L~~~-egrlse~eLAer---lGV--SRs~ireAlrkL 222 (251)
T TIGR02787 175 NTLSYSELEAVEHIFEELDGN-EGLLVASKIADR---VGI--TRSVIVNALRKL 222 (251)
T ss_pred HhccHhHHHHHHHHHHHhccc-cccccHHHHHHH---HCC--CHHHHHHHHHHH
Confidence 357888899999999988763 689999888854 344 444555555554
No 240
>KOG2301|consensus
Probab=46.38 E-value=22 Score=32.43 Aligned_cols=70 Identities=10% Similarity=0.122 Sum_probs=48.7
Q ss_pred CCCCcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCC----CHHHHHHHHhhccCCCCCceeHHHHHHHHhc
Q psy164 86 FQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPF----TPEEIDEMMSTAVDQDTGRIPYEYYINHIMK 156 (161)
Q Consensus 86 ~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~----~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 156 (161)
..+...+....+|..||++.+|+|..+++..++..+..++ .... ..+...+....++.|++.+-+-.+.+
T Consensus 1411 Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~ 1484 (1592)
T KOG2301|consen 1411 LSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTK 1484 (1592)
T ss_pred CCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHH
Confidence 4456678999999999999999999999999999874322 1111 22333344556778887776666553
No 241
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=45.11 E-value=78 Score=19.97 Aligned_cols=45 Identities=20% Similarity=0.268 Sum_probs=30.7
Q ss_pred CcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHhh
Q psy164 89 ASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEE-GEPFTPEEIDEMMST 136 (161)
Q Consensus 89 ~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~-g~~~~~~~~~~~~~~ 136 (161)
.....+..+|++|- .+.|+.+.+..++... |..+|..++.=+...
T Consensus 34 tf~~Kl~~Il~mFl---~~eid~e~~y~l~~~~d~~~LT~~Qi~Yl~~~ 79 (122)
T PF06648_consen 34 TFLDKLIKILKMFL---NDEIDVEDMYNLFGAVDGLKLTRSQIDYLYNR 79 (122)
T ss_pred hHHHHHHHHHHHHH---hCCCCHHHHHHHHhcccHhhcCHHHHHHHHHH
Confidence 44567777888885 4568888888887765 467777776555444
No 242
>KOG3077|consensus
Probab=45.04 E-value=1.2e+02 Score=21.98 Aligned_cols=108 Identities=14% Similarity=0.116 Sum_probs=62.3
Q ss_pred HHHHHHHHhh-CCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhc----------
Q psy164 15 KKIADAFDIF-DHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISE---------- 83 (161)
Q Consensus 15 ~~l~~~f~~~-D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~---------- 83 (161)
..+...|..+ |+..+..|..+-+..+...+|+.|..-.+-.+-..+....-+.++-.+|+..+..+...
T Consensus 64 ~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~l~~dS~d~lq~~l~ 143 (260)
T KOG3077|consen 64 KRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMTALGCDSIDKLQQRLD 143 (260)
T ss_pred HHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 3455556554 45545689999999999999998765444444444443335678888888766543211
Q ss_pred -----CCCCCCcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcC
Q psy164 84 -----NRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEG 122 (161)
Q Consensus 84 -----~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g 122 (161)
-+-........+-+|...+..+--.++.+.-..+++-++
T Consensus 144 ~l~~~l~d~~~Fk~iY~faf~fa~e~~qk~Ld~~~ai~~w~ll~ 187 (260)
T KOG3077|consen 144 FLRSVLKDLEKFKSIYRFAFNFAKEPGQKSLDLETAISLWKLLF 187 (260)
T ss_pred HHHHHHccHHHhhHHHHhhhhhccCcCcCcCCHHHHHHHHHHHh
Confidence 000001123344455555544555677776666666543
No 243
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=44.77 E-value=69 Score=23.12 Aligned_cols=50 Identities=10% Similarity=0.065 Sum_probs=31.2
Q ss_pred CCCcccHHHHHH---HHHHcCCCCCHHHHHHHHhhccCCCCCceeHHHHHHHHhc
Q psy164 105 NKSYLDKEYLTK---LMIEEGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIMK 156 (161)
Q Consensus 105 ~~g~I~~~el~~---~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 156 (161)
-+|.|+..|... ++..++ +++++-......+...+....++.+|++.+..
T Consensus 68 ADG~Vse~Ei~~~~~l~~~~~--l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~ 120 (267)
T PRK09430 68 AKGRVTEADIRIASQLMDRMN--LHGEARRAAQQAFREGKEPDFPLREKLRQFRS 120 (267)
T ss_pred cCCCcCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhcccCCCHHHHHHHHHH
Confidence 478899999862 222334 67776444444454444455778888877754
No 244
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=44.24 E-value=45 Score=19.75 Aligned_cols=39 Identities=15% Similarity=0.309 Sum_probs=15.5
Q ss_pred HHHHHHHcCCCCCHHHHHHHHhhccC-----CCCCceeHHHHHH
Q psy164 114 LTKLMIEEGEPFTPEEIDEMMSTAVD-----QDTGRIPYEYYIN 152 (161)
Q Consensus 114 l~~~l~~~g~~~~~~~~~~~~~~~d~-----~~~g~i~~~eF~~ 152 (161)
|+.+|+.-|..++.+++..++...+. -..|.|+.+.+.+
T Consensus 14 Lk~lLk~rGi~v~~~~L~~f~~~i~~~~PWF~~eG~l~~~~W~k 57 (90)
T PF02337_consen 14 LKHLLKERGIRVKKKDLINFLSFIDKVCPWFPEEGTLDLDNWKK 57 (90)
T ss_dssp HHHHHHCCT----HHHHHHHHHHHHHHTT-SS--SS-HHHHHHH
T ss_pred HHHHHHHcCeeecHHHHHHHHHHHHHhCCCCCCCCCcCHHHHHH
Confidence 44444445555555555555554332 2344555554443
No 245
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=44.15 E-value=41 Score=21.69 Aligned_cols=31 Identities=16% Similarity=0.123 Sum_probs=24.6
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHhhccC
Q psy164 109 LDKEYLTKLMIEEGEPFTPEEIDEMMSTAVD 139 (161)
Q Consensus 109 I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~ 139 (161)
.|+++++.+...++.++|++++..+++.++.
T Consensus 27 WT~eDV~~~a~gme~~lTd~E~~aVL~~I~~ 57 (139)
T PF07128_consen 27 WTREDVRALADGMEYNLTDDEARAVLARIGD 57 (139)
T ss_pred ecHHHHHHHHhcCCCCCCHHHHHHHHHHHhc
Confidence 5778888887777777888888888888764
No 246
>PF13592 HTH_33: Winged helix-turn helix
Probab=44.12 E-value=51 Score=17.54 Aligned_cols=32 Identities=9% Similarity=0.171 Sum_probs=20.8
Q ss_pred CcccHHHHHHHHHH-cCCCCCHHHHHHHHhhcc
Q psy164 107 SYLDKEYLTKLMIE-EGEPFTPEEIDEMMSTAV 138 (161)
Q Consensus 107 g~I~~~el~~~l~~-~g~~~~~~~~~~~~~~~d 138 (161)
+..+..++...+.. +|...+..-+..+++..+
T Consensus 3 ~~wt~~~i~~~I~~~fgv~ys~~~v~~lL~r~G 35 (60)
T PF13592_consen 3 GRWTLKEIAAYIEEEFGVKYSPSGVYRLLKRLG 35 (60)
T ss_pred CcccHHHHHHHHHHHHCCEEcHHHHHHHHHHcC
Confidence 45566666666655 676677777777776654
No 247
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=44.07 E-value=48 Score=19.46 Aligned_cols=28 Identities=14% Similarity=0.179 Sum_probs=18.1
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHhh
Q psy164 109 LDKEYLTKLMIEEGEPFTPEEIDEMMST 136 (161)
Q Consensus 109 I~~~el~~~l~~~g~~~~~~~~~~~~~~ 136 (161)
|+.++++++.+-....++++++..+...
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~~~ 28 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFAGD 28 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 4566777777666666777776555433
No 248
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=43.97 E-value=57 Score=22.15 Aligned_cols=37 Identities=24% Similarity=0.224 Sum_probs=24.4
Q ss_pred CCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Q psy164 25 DHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCE 61 (161)
Q Consensus 25 D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d 61 (161)
..+.+|+++.+++...+..-+..++.+++..++..-+
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 3567899999999999887777788999999887754
No 249
>KOG2557|consensus
Probab=43.80 E-value=88 Score=23.89 Aligned_cols=51 Identities=12% Similarity=0.202 Sum_probs=37.9
Q ss_pred CCccchhhHHHHHHHhhhcCCCCCCcHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q psy164 65 FGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIE 120 (161)
Q Consensus 65 ~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~ 120 (161)
+-.++++.++......-.. ...+..+.++...|.+++|+...+++.+.+..
T Consensus 72 ~~~~~l~k~~~~~~~~~~g-----t~dq~a~mL~~~~~~sgn~~~~~~q~eQ~~~~ 122 (427)
T KOG2557|consen 72 DDKMTLEKLVIAKATYEKG-----TDDQIAEMLYQTLDVNGNGVLSRSQLEQFLVV 122 (427)
T ss_pred CccchHHHHhhHHhhhccC-----cccHHHHHHHHHHhhccccccchhHHHHHHHH
Confidence 4467888777655543322 44567788888999999999999999888865
No 250
>KOG0493|consensus
Probab=42.94 E-value=81 Score=22.77 Aligned_cols=46 Identities=15% Similarity=0.217 Sum_probs=33.2
Q ss_pred ccCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy164 6 EVHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIV 58 (161)
Q Consensus 6 ~~~l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~ 58 (161)
+..+|.+|+++|+.-|+. +-||+..-=..+...||+ ++.+++..|+
T Consensus 250 RTAFtaeQL~RLK~EF~e-----nRYlTEqRRQ~La~ELgL--NEsQIKIWFQ 295 (342)
T KOG0493|consen 250 RTAFTAEQLQRLKAEFQE-----NRYLTEQRRQELAQELGL--NESQIKIWFQ 295 (342)
T ss_pred cccccHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHhCc--CHHHhhHHhh
Confidence 456999999999998863 568887766666676764 4666665553
No 251
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=41.91 E-value=73 Score=20.89 Aligned_cols=116 Identities=9% Similarity=0.112 Sum_probs=60.3
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcC-CC
Q psy164 8 HITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISEN-RF 86 (161)
Q Consensus 8 ~l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~-~~ 86 (161)
.+++.....++.++.... .+|.+...++...|. +++..+..++.... ..|.|.|..+.-+.-.-...+ ..
T Consensus 3 ~~s~~~edYL~~Iy~l~~--~~~~~~~~diA~~L~-----Vsp~sVt~ml~rL~--~~GlV~~~~y~gi~LT~~G~~~a~ 73 (154)
T COG1321 3 MLSETEEDYLETIYELLE--EKGFARTKDIAERLK-----VSPPSVTEMLKRLE--RLGLVEYEPYGGVTLTEKGREKAK 73 (154)
T ss_pred ccchHHHHHHHHHHHHHh--ccCcccHHHHHHHhC-----CCcHHHHHHHHHHH--HCCCeEEecCCCeEEChhhHHHHH
Confidence 456677778888887666 678999999887654 44455666666663 345555544322111000000 00
Q ss_pred -CCCcHHHHHHHHH-hhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcc
Q psy164 87 -QPASAEELLKAFR-TLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAV 138 (161)
Q Consensus 87 -~~~~~~~~~~~f~-~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d 138 (161)
.......+...+. ..+ ++.++...--+.+.+.++++-+..+.+.++
T Consensus 74 ~~~r~hrlle~fL~~~lg------~~~~~~~~ea~~leh~~s~~~~~rl~~~l~ 121 (154)
T COG1321 74 ELLRKHRLLERFLVDVLG------LDWEEAHEEAEGLEHALSDETAERLDELLG 121 (154)
T ss_pred HHHHHHHHHHHHHHHHhC------CCHHHHHHHHHHHhhcCCHHHHHHHHHHhC
Confidence 0000012222222 121 344455544555666677777777766654
No 252
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=41.86 E-value=76 Score=18.89 Aligned_cols=55 Identities=15% Similarity=0.096 Sum_probs=33.0
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHH---HHHhhccCCCCCceeHHHHHHHHhccccCC
Q psy164 106 KSYLDKEYLTKLMIEEGEPFTPEEID---EMMSTAVDQDTGRIPYEYYINHIMKSEERL 161 (161)
Q Consensus 106 ~g~I~~~el~~~l~~~g~~~~~~~~~---~~~~~~d~~~~g~i~~~eF~~~l~~~~~~l 161 (161)
....+.+++..++...+..+ .+-+. ..++..+......++-+++++.|..+|..|
T Consensus 33 ~~~~~~~~l~~~~~~~~~~~-~~li~~~~~~~~~l~~~~~~~ls~~e~~~~l~~~p~Li 90 (105)
T cd02977 33 KEPPTKEELKELLAKLGLGV-EDLFNTRGTPYRKLGLADKDELSDEEALELMAEHPKLI 90 (105)
T ss_pred cCCCCHHHHHHHHHhcCCCH-HHHHhcCCchHHHcCCccccCCCHHHHHHHHHhCcCee
Confidence 35567778888887776211 11111 223333333245788999999999888653
No 253
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=41.80 E-value=81 Score=19.25 Aligned_cols=29 Identities=21% Similarity=0.464 Sum_probs=27.1
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHhhc
Q psy164 109 LDKEYLTKLMIEEGEPFTPEEIDEMMSTA 137 (161)
Q Consensus 109 I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 137 (161)
||.++++.+|...|..+++..+..+++.+
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aL 45 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSAL 45 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHH
Confidence 99999999999999999999999888886
No 254
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=41.54 E-value=41 Score=22.94 Aligned_cols=109 Identities=15% Similarity=0.125 Sum_probs=62.1
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhC----CCCCCccchhhHHHHHHHhhh------c
Q psy164 14 EKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCE----NPEFGNIALSRFLPIVSGMIS------E 83 (161)
Q Consensus 14 ~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d----~~~~~~i~~~ef~~~~~~~~~------~ 83 (161)
.+.++++|..||...--..+.+++..++..-++--+...++.++.... .... .-+|.+|+-.+..-.+ .
T Consensus 53 re~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~Avi~NA~~~l~i~~e-~gSf~~ylW~fv~~~p~~~~~~~ 131 (187)
T PRK10353 53 RENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQN-GEPFADFVWSFVNHQPQVTQATT 131 (187)
T ss_pred HHHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhHHhHHHHHHHHHHHHHHHHHHHh-cCCHHHHHhhccCCCcccCCccc
Confidence 457899999999988778899999999876665444444444332110 0011 1266666643321100 0
Q ss_pred CCCCCCcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCC
Q psy164 84 NRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGE 123 (161)
Q Consensus 84 ~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~ 123 (161)
....+.....-..+.+.+-+.|-.+|-+.-...+|...|.
T Consensus 132 ~~~~P~~t~~S~~lskdLKkrGFkFvGpt~~ysfmqA~G~ 171 (187)
T PRK10353 132 LSEIPTSTPASDALSKALKKRGFKFVGTTICYSFMQACGL 171 (187)
T ss_pred hhcCCCCCHHHHHHHHHHHHcCCcccCcHHHHHHHHHHCC
Confidence 0001122234445556665667777777777777777774
No 255
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=41.50 E-value=57 Score=19.16 Aligned_cols=29 Identities=14% Similarity=0.220 Sum_probs=20.9
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHhh
Q psy164 108 YLDKEYLTKLMIEEGEPFTPEEIDEMMST 136 (161)
Q Consensus 108 ~I~~~el~~~l~~~g~~~~~~~~~~~~~~ 136 (161)
.|+.++++++.+-....++++++..+...
T Consensus 2 ~i~~e~i~~la~La~l~l~~ee~~~~~~~ 30 (95)
T PRK00034 2 AITREEVKHLAKLARLELSEEELEKFAGQ 30 (95)
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 37778888888877777888776655444
No 256
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=41.47 E-value=59 Score=17.60 Aligned_cols=25 Identities=32% Similarity=0.344 Sum_probs=20.6
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHH
Q psy164 109 LDKEYLTKLMIEEGEPFTPEEIDEM 133 (161)
Q Consensus 109 I~~~el~~~l~~~g~~~~~~~~~~~ 133 (161)
.+.+++..+.+..|+.+|.+++...
T Consensus 25 ~~~e~~~~lA~~~Gf~ft~~el~~~ 49 (64)
T TIGR03798 25 EDPEDRVAIAKEAGFEFTGEDLKEA 49 (64)
T ss_pred CCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4478899999999999999988763
No 257
>KOG0506|consensus
Probab=40.61 E-value=1e+02 Score=24.49 Aligned_cols=62 Identities=8% Similarity=0.096 Sum_probs=46.7
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhh---ccC-----CCCCceeHHHHHHHHhc
Q psy164 95 LKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMST---AVD-----QDTGRIPYEYYINHIMK 156 (161)
Q Consensus 95 ~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~---~d~-----~~~g~i~~~eF~~~l~~ 156 (161)
..+|..|-...++.|+.--|-.+|+..|..-++--+..++.. ++. ...+.++.+-|.+++-.
T Consensus 89 DLLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~s 158 (622)
T KOG0506|consen 89 DLLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFS 158 (622)
T ss_pred hhhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhcc
Confidence 346777765667999999999999999988877777766555 332 23458999999988754
No 258
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=40.29 E-value=23 Score=24.02 Aligned_cols=34 Identities=21% Similarity=0.409 Sum_probs=29.5
Q ss_pred cHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCC
Q psy164 90 SAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGE 123 (161)
Q Consensus 90 ~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~ 123 (161)
..+.++.+|..||..+--..+.+++..+|..-|.
T Consensus 53 KRe~freaF~~Fd~~kVA~~~~~dverLl~d~gI 86 (188)
T COG2818 53 KREAFREAFHGFDPEKVAAMTEEDVERLLADAGI 86 (188)
T ss_pred hHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcch
Confidence 3478999999999999888999999999988774
No 259
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=39.67 E-value=76 Score=18.31 Aligned_cols=51 Identities=16% Similarity=0.210 Sum_probs=30.8
Q ss_pred cccCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q psy164 5 EEVHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTC 60 (161)
Q Consensus 5 ~~~~l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~ 60 (161)
++.+++.+++..++.+|..+=..+ .+.++-...+.... ...++++.++.-+
T Consensus 24 rR~Gfs~~~i~~l~~ayr~l~~~~---~~~~~a~~~l~~~~--~~~~~v~~~~~Fi 74 (83)
T PF13720_consen 24 RRRGFSKEEISALRRAYRILFRSG---LTLEEALEELEEEY--PDSPEVREIVDFI 74 (83)
T ss_dssp HHTTS-HHHHHHHHHHHHHHHTSS---S-HHHHHHHHHHHT--TSCHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHhc--cCCHHHHHHHHHH
Confidence 467899999999999998876532 45555555555421 1134555555444
No 260
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=39.63 E-value=38 Score=23.04 Aligned_cols=43 Identities=19% Similarity=0.234 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHH
Q psy164 13 FEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQE 55 (161)
Q Consensus 13 ~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~ 55 (161)
..+.++++|..||.++--..+.+++..+|.-.|+--+...++.
T Consensus 53 KRe~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A 95 (188)
T COG2818 53 KREAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKA 95 (188)
T ss_pred hHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHH
Confidence 3467899999999998889999999999987776544444443
No 261
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=39.53 E-value=47 Score=19.09 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=13.5
Q ss_pred HHHHHHHHcCCCCCHHHHHHHH
Q psy164 113 YLTKLMIEEGEPFTPEEIDEMM 134 (161)
Q Consensus 113 el~~~l~~~g~~~~~~~~~~~~ 134 (161)
|+-.+|+.+|.++++++..-+-
T Consensus 21 EIL~ALrkLge~Ls~eE~~FL~ 42 (78)
T PF06384_consen 21 EILTALRKLGEKLSPEEEAFLE 42 (78)
T ss_dssp HHHHHHHHTT----HHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHH
Confidence 5677889999999998865543
No 262
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=39.40 E-value=78 Score=23.84 Aligned_cols=97 Identities=14% Similarity=0.184 Sum_probs=47.2
Q ss_pred HHHhhC---CCCCCcccHHHHHHHHHHhCCCCC----------HHHHHHHHHHhCCCC-CCccchhh-H-HHHHHHhhhc
Q psy164 20 AFDIFD---HAGNKTIDCREVGTVLRALGGCPT----------EADIQEIIVTCENPE-FGNIALSR-F-LPIVSGMISE 83 (161)
Q Consensus 20 ~f~~~D---~~~~g~i~~~el~~~l~~l~~~~~----------~~~~~~l~~~~d~~~-~~~i~~~e-f-~~~~~~~~~~ 83 (161)
.|..|| .++.+.++..+...+|..+|++.. ..++..++......+ .|.|-=.. - ...+....
T Consensus 127 ~F~vFDI~~~~~~~~lp~~eR~~lLe~lg~~~v~~~~~~~~~d~~~l~~~l~~~~~~G~EGVVlK~~~~~~~~~Ky~t-- 204 (342)
T cd07894 127 GFFVFDIRKKNTGRPLPVEERRELLEKYGLPTVRLFGEFTADEIEELKEIIRELDKEGREGVVLKDPDMRVPPLKYTT-- 204 (342)
T ss_pred EEEEEeeEEcCCCCCCCHHHHHHHHHhcCCCCcceEEEEecCCHHHHHHHHHHHHHCCCceEEEeccccccCcceeec--
Confidence 344455 333567888999999988876432 244555555544332 23221000 0 00001100
Q ss_pred CCCCCCcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHc
Q psy164 84 NRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEE 121 (161)
Q Consensus 84 ~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~ 121 (161)
.......++.+|+.+-.-+.+++...=++.++...
T Consensus 205 ---~~~~~~di~~~~~~~~d~~~~~~~~Ri~R~~~~~~ 239 (342)
T cd07894 205 ---SYSNCSDIRYAFRYPFDLGRDFFFSRIVREGFQSV 239 (342)
T ss_pred ---CCCCcHHHHHHhhhccccCchHHHHHHHHHHHHHH
Confidence 11344667777776643455555555455555443
No 263
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=39.36 E-value=55 Score=16.62 Aligned_cols=46 Identities=13% Similarity=0.096 Sum_probs=33.8
Q ss_pred ccCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy164 6 EVHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIV 58 (161)
Q Consensus 6 ~~~l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~ 58 (161)
...++++++..|...|...- +.+..+...+...+|+. ...|..-|.
T Consensus 4 r~~~~~~~~~~L~~~f~~~~-----~P~~~~~~~la~~~~l~--~~qV~~WF~ 49 (56)
T smart00389 4 RTSFTPEQLEELEKEFQKNP-----YPSREEREELAAKLGLS--ERQVKVWFQ 49 (56)
T ss_pred CCcCCHHHHHHHHHHHHhCC-----CCCHHHHHHHHHHHCcC--HHHHHHhHH
Confidence 34589999999999887432 77888888888888755 555655543
No 264
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=38.89 E-value=40 Score=15.59 Aligned_cols=15 Identities=13% Similarity=0.133 Sum_probs=10.0
Q ss_pred CCcccHHHHHHHHHH
Q psy164 106 KSYLDKEYLTKLMIE 120 (161)
Q Consensus 106 ~g~I~~~el~~~l~~ 120 (161)
.|.|+.+++..+...
T Consensus 2 ~~~i~~~~~~d~a~r 16 (33)
T PF09373_consen 2 SGTISKEEYLDMASR 16 (33)
T ss_pred CceecHHHHHHHHHH
Confidence 466777777766654
No 265
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=38.79 E-value=88 Score=18.77 Aligned_cols=77 Identities=13% Similarity=0.200 Sum_probs=43.3
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCCCCCCcHHHHHHHHHhhCCCCCCccc
Q psy164 31 TIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLD 110 (161)
Q Consensus 31 ~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~ 110 (161)
.++..+++.+.+.+| +++.++..+-..... + ..++-.+++..+.... ...| +
T Consensus 17 ~~~~~~wK~faR~lg--lse~~Id~I~~~~~~--d---~~Eq~~qmL~~W~~~~-------------------G~~a--~ 68 (97)
T cd08316 17 VMTLKDVKKFVRKSG--LSEPKIDEIKLDNPQ--D---TAEQKVQLLRAWYQSH-------------------GKTG--A 68 (97)
T ss_pred HcCHHHHHHHHHHcC--CCHHHHHHHHHcCCC--C---hHHHHHHHHHHHHHHh-------------------CCCc--h
Confidence 466777888888887 446666665443321 1 1444444444332210 1122 2
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHh
Q psy164 111 KEYLTKLMIEEGEPFTPEEIDEMMS 135 (161)
Q Consensus 111 ~~el~~~l~~~g~~~~~~~~~~~~~ 135 (161)
...|.++|..++.....+.+..++.
T Consensus 69 ~~~Li~aLr~~~l~~~Ad~I~~~l~ 93 (97)
T cd08316 69 YRTLIKTLRKAKLCTKADKIQDIIE 93 (97)
T ss_pred HHHHHHHHHHccchhHHHHHHHHHH
Confidence 4667788888887777777766654
No 266
>PRK10026 arsenate reductase; Provisional
Probab=38.72 E-value=1.1e+02 Score=19.86 Aligned_cols=52 Identities=12% Similarity=0.114 Sum_probs=28.9
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHH---HHHHhhccCCCCCceeHHHHHHHHhccccC
Q psy164 107 SYLDKEYLTKLMIEEGEPFTPEEI---DEMMSTAVDQDTGRIPYEYYINHIMKSEER 160 (161)
Q Consensus 107 g~I~~~el~~~l~~~g~~~~~~~~---~~~~~~~d~~~~g~i~~~eF~~~l~~~~~~ 160 (161)
-..|.++|+.++..+|... .+-+ ...++..+.+. ..++.++.+..|..+|..
T Consensus 37 ~ppt~~eL~~~l~~~g~~~-~~lint~~~~yr~L~~~~-~~ls~~e~l~ll~~~P~L 91 (141)
T PRK10026 37 TPPTRDELVKLIADMGISV-RALLRKNVEPYEELGLAE-DKFTDDQLIDFMLQHPIL 91 (141)
T ss_pred CCcCHHHHHHHHHhCCCCH-HHHHHcCCchHHHcCCCc-cCCCHHHHHHHHHhCccc
Confidence 4477778888887776321 1111 11233333222 246778888888877653
No 267
>COG4807 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.62 E-value=1.1e+02 Score=19.66 Aligned_cols=96 Identities=14% Similarity=0.097 Sum_probs=57.6
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCCC---CCccchhhHHHHHHHhhhcCCC--CC----------CcHHHHHHHHH
Q psy164 35 REVGTVLRALGGCPTEADIQEIIVTCENPE---FGNIALSRFLPIVSGMISENRF--QP----------ASAEELLKAFR 99 (161)
Q Consensus 35 ~el~~~l~~l~~~~~~~~~~~l~~~~d~~~---~~~i~~~ef~~~~~~~~~~~~~--~~----------~~~~~~~~~f~ 99 (161)
..+..++...+...+.+++...+..-|.++ .-.+....|+..+......+.- +. -....++-+|.
T Consensus 19 n~lv~i~~~~n~~~t~edv~~yLkKedeeGfq~cpd~~l~~fL~GLI~qkRGkde~~P~p~ve~~inNNivLkKLRiAf~ 98 (155)
T COG4807 19 NDLVRILALGNVEATAEDVAVYLKKEDEEGFQRCPDIVLSSFLNGLIYQKRGKDESAPAPEVERRINNNIVLKKLRIAFS 98 (155)
T ss_pred hHHHHHHHhcCcccCHHHHHHHHHHhhHhHHhhCcHHHHHHHhcchheeecccccCCCCCcceeeecchhhHHhHhHhhh
Confidence 456677777777777777766665544332 1123444455544433222110 00 01245666776
Q ss_pred hhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhccC
Q psy164 100 TLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVD 139 (161)
Q Consensus 100 ~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~ 139 (161)
.-+ .++..++...+.+++.-|+.+++..-|.
T Consensus 99 lK~---------~Dm~~I~~~~~f~vS~pElsAlfR~~~h 129 (155)
T COG4807 99 LKT---------DDMLAILTEQQFRVSMPELSALFRAPDH 129 (155)
T ss_pred ccc---------chHHHHHhccCcccccHHHHHHHhCCCc
Confidence 543 2588899998999999999999988763
No 268
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=38.20 E-value=10 Score=17.38 Aligned_cols=18 Identities=11% Similarity=0.143 Sum_probs=12.2
Q ss_pred HHHHhhccCCCCCceeHH
Q psy164 131 DEMMSTAVDQDTGRIPYE 148 (161)
Q Consensus 131 ~~~~~~~d~~~~g~i~~~ 148 (161)
..++..-|.|++-.|+.+
T Consensus 2 ~~LL~qEDTDgn~qITIe 19 (30)
T PF07492_consen 2 RSLLEQEDTDGNFQITIE 19 (30)
T ss_pred hhHhhccccCCCcEEEEe
Confidence 356677778887777644
No 269
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=38.07 E-value=68 Score=17.30 Aligned_cols=31 Identities=10% Similarity=0.162 Sum_probs=16.6
Q ss_pred CcHHHHHHHHHhh--CCCCCCcccHHHHHHHHHH
Q psy164 89 ASAEELLKAFRTL--DKDNKSYLDKEYLTKLMIE 120 (161)
Q Consensus 89 ~~~~~~~~~f~~~--D~~~~g~I~~~el~~~l~~ 120 (161)
-+.+.+....+.+ +. +...++.++++.+|..
T Consensus 12 l~l~RIh~mLkmf~~~~-~~~~~s~~eL~~fL~~ 44 (60)
T PF08672_consen 12 LPLDRIHSMLKMFPKDP-GGYDISLEELQEFLDR 44 (60)
T ss_dssp EEHHHHHHHHHHH-GGG---TT--HHHHHHHHHH
T ss_pred CCHHHHHHHHHhccCCC-CCCCCCHHHHHHHHHH
Confidence 3445666666666 32 3455777777777755
No 270
>cd07177 terB_like tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.
Probab=37.81 E-value=83 Score=18.19 Aligned_cols=78 Identities=13% Similarity=0.126 Sum_probs=37.3
Q ss_pred CCcccHHHHHHHHHHhCCCC--CH---HHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCCCCCCcHHHHHHHHHhhCC
Q psy164 29 NKTIDCREVGTVLRALGGCP--TE---ADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDK 103 (161)
Q Consensus 29 ~g~i~~~el~~~l~~l~~~~--~~---~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~ 103 (161)
||.++..|...+...+.... +. ..+..++...-.. ..+...+.......... .....-+..++.+..
T Consensus 13 DG~i~~~E~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----~~r~~~l~~~~~ia~- 84 (104)
T cd07177 13 DGRVDEEEIAAIEALLRRLPLLDAEERAELIALLEEPLAE---AGDLAALAALLKELPDA----ELREALLAALWEVAL- 84 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCH----HHHHHHHHHHHHHHH-
Confidence 78888888766655432211 23 3344444333211 22344455544443211 022344555555553
Q ss_pred CCCCcccHHHHH
Q psy164 104 DNKSYLDKEYLT 115 (161)
Q Consensus 104 ~~~g~I~~~el~ 115 (161)
-+|.++..|..
T Consensus 85 -aDG~~~~~E~~ 95 (104)
T cd07177 85 -ADGELDPEERA 95 (104)
T ss_pred -hccCCCHHHHH
Confidence 45777776654
No 271
>KOG4301|consensus
Probab=37.67 E-value=1e+02 Score=23.25 Aligned_cols=75 Identities=16% Similarity=0.110 Sum_probs=48.5
Q ss_pred cCCCHHHHHHHHHHH--HhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhh
Q psy164 7 VHITNDFEKKIADAF--DIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMIS 82 (161)
Q Consensus 7 ~~l~~~~~~~l~~~f--~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~ 82 (161)
..+..++.--+.-.| ..+|..+.|.++...+.-.|..+.-.--...++-++.... +.+|...+-.|..++...+.
T Consensus 100 ~~id~e~sislllaflLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~is-ds~gim~~i~~~~fl~evls 176 (434)
T KOG4301|consen 100 HQIDVEQSISLLLAFLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHEVLS 176 (434)
T ss_pred ccccHHHHHHHHHHHHHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHc
Confidence 345555554444444 4567778888888888877776533222455666666664 66788888888887776543
No 272
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=37.17 E-value=96 Score=20.96 Aligned_cols=43 Identities=12% Similarity=0.074 Sum_probs=31.8
Q ss_pred CCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchh
Q psy164 26 HAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALS 71 (161)
Q Consensus 26 ~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ 71 (161)
.+.+|.++.+++...++.-+..++.+++..++..-+ .+...+.
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~---K~Rf~l~ 70 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDD---KGRFEIS 70 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCC---CcceEec
Confidence 467899999999998876556688888888876644 3444443
No 273
>KOG0869|consensus
Probab=36.16 E-value=1.3e+02 Score=19.92 Aligned_cols=83 Identities=14% Similarity=0.251 Sum_probs=47.7
Q ss_pred CCCcccHHHHHHHHHHhCCCCC---HHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCCCCCCcHHHHHHHHHhhCCC
Q psy164 28 GNKTIDCREVGTVLRALGGCPT---EADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKD 104 (161)
Q Consensus 28 ~~g~i~~~el~~~l~~l~~~~~---~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~ 104 (161)
.+..|++..+..++++. ++.+ ..+++..++.+ ..||++++.... -..+...
T Consensus 29 qDr~LPIANV~RIMK~~-lP~naKIsKDAKE~vQEC---------VSEfISFvT~EA----------------sekC~~E 82 (168)
T KOG0869|consen 29 QDRFLPIANVSRIMKKA-LPANAKISKDAKETVQEC---------VSEFISFVTGEA----------------SEKCQRE 82 (168)
T ss_pred hhhhccHHHHHHHHHhc-CCcccccchHHHHHHHHH---------HHHHHHHHhhHH----------------HHHHHHH
Confidence 35567777777777653 2211 13444444444 567888777431 1222235
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHhh
Q psy164 105 NKSYLDKEYLTKLMIEEGEPFTPEEIDEMMST 136 (161)
Q Consensus 105 ~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~ 136 (161)
+.-+|+-+++..+|..+|..-=.+-+...+..
T Consensus 83 kRKTIngdDllwAm~tLGFe~Y~eplkiyL~k 114 (168)
T KOG0869|consen 83 KRKTINGDDLLWAMSTLGFENYAEPLKIYLQK 114 (168)
T ss_pred hcCcccHHHHHHHHHHcCcHhHHHHHHHHHHH
Confidence 66789999999999998853222333444433
No 274
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=36.01 E-value=93 Score=18.24 Aligned_cols=51 Identities=8% Similarity=-0.138 Sum_probs=35.8
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhccCCCCCceeHHHHHHHHh
Q psy164 105 NKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIM 155 (161)
Q Consensus 105 ~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 155 (161)
..-.|.-.+|++.|.....-.+..+...+=.-+|...++.||--||--+.+
T Consensus 19 ~r~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtR 69 (85)
T PF02761_consen 19 KRTIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTR 69 (85)
T ss_dssp T-SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CCeEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHH
Confidence 346799999999999854333445556666778999999999888765543
No 275
>cd08814 DED_Caspase_10_repeat2 Death Effector Domain, repeat 2, of Caspase-10. Death effector domain (DED) found in Caspase-10, repeat 2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-10 is an initiator of death receptor mediated apoptosis. Together with FADD, caspase-8 and the pseudo-caspase c-FLIP, it forms the death-inducing signaling complex (DISC), whose formation is triggered by the activation of type 1 tumor necrosis factor (TNF) receptors such as Fas, TNF receptor 1, and TRAIL receptor. It contains two N-terminal DED domains and a C-terminal caspase domain. DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other m
Probab=35.54 E-value=90 Score=17.96 Aligned_cols=63 Identities=17% Similarity=0.202 Sum_probs=34.2
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHhCCC-CCCccchhhHHHHHHHhhhcCCCCCCcHHHHHHHHHhh
Q psy164 36 EVGTVLRALGGCPTEADIQEIIVTCENP-EFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTL 101 (161)
Q Consensus 36 el~~~l~~l~~~~~~~~~~~l~~~~d~~-~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 101 (161)
.++.+|-.++-.++.+++..+-..+... +.... .++.++..+.......++....++.+++..
T Consensus 3 ~yr~lL~~iSe~lt~edL~~lKFLl~~~i~~~~~---t~Ldlf~~LEk~~~L~~dnl~~L~~il~~i 66 (79)
T cd08814 3 SYRNMLYELSENITSEDLKDIIFLLKDHLPKTEK---TFLSLLAFLEKQNLLTENNLTILEDICKTV 66 (79)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHhHHHcCcccc---cHHHHHHHHHhcCCCCCccHHHHHHHHHHH
Confidence 4566777777777777776654443211 11222 335555555444444455666666666544
No 276
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=35.35 E-value=76 Score=19.53 Aligned_cols=15 Identities=20% Similarity=0.237 Sum_probs=9.3
Q ss_pred CCCcccHHHHHHHHH
Q psy164 28 GNKTIDCREVGTVLR 42 (161)
Q Consensus 28 ~~g~i~~~el~~~l~ 42 (161)
++..|+..|+...+.
T Consensus 9 n~eiIt~sel~~~~~ 23 (118)
T PF09312_consen 9 NDEIITQSELEQRLA 23 (118)
T ss_dssp SSSEEEHHHHHHHHH
T ss_pred CCcCcCHHHHHHHHH
Confidence 345667777666654
No 277
>PF12244 DUF3606: Protein of unknown function (DUF3606); InterPro: IPR022037 This family of proteins is found in bacteria. Proteins in this family are typically between 58 and 85 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=34.78 E-value=76 Score=16.87 Aligned_cols=27 Identities=15% Similarity=0.087 Sum_probs=18.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhhccC
Q psy164 111 KEYLTKLMIEEGEPFTPEEIDEMMSTAVD 139 (161)
Q Consensus 111 ~~el~~~l~~~g~~~~~~~~~~~~~~~d~ 139 (161)
..|++.+.+.+| +|++++...+...+.
T Consensus 20 ~~ev~ywa~~~g--vt~~~L~~AV~~vG~ 46 (57)
T PF12244_consen 20 PYEVRYWAKRFG--VTEEQLREAVRAVGN 46 (57)
T ss_pred HHHHHHHHHHHC--cCHHHHHHHHHHHCc
Confidence 346666777777 777777777776653
No 278
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=34.49 E-value=81 Score=17.10 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=15.4
Q ss_pred ccHHHHHHHHHHcCC----CCCHHHHHHHHhh
Q psy164 109 LDKEYLTKLMIEEGE----PFTPEEIDEMMST 136 (161)
Q Consensus 109 I~~~el~~~l~~~g~----~~~~~~~~~~~~~ 136 (161)
|..++|...|+..|. .++...+..++..
T Consensus 25 I~L~el~~~L~~~g~~~~~~~~~~~l~~~lD~ 56 (64)
T PF09494_consen 25 INLEELHAWLKASGIGFDRKVDPSKLKEWLDS 56 (64)
T ss_pred ccHHHHHHHHHHcCCCccceeCHHHHHHHHHH
Confidence 666666666665554 4555555444433
No 279
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=34.48 E-value=1.1e+02 Score=18.73 Aligned_cols=30 Identities=10% Similarity=0.298 Sum_probs=27.2
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHhhc
Q psy164 108 YLDKEYLTKLMIEEGEPFTPEEIDEMMSTA 137 (161)
Q Consensus 108 ~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 137 (161)
.||.+.+..+|...|..+.+..+..++..+
T Consensus 16 ~it~e~I~~IL~AAGveVee~~~k~~v~aL 45 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEARVKALVAAL 45 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence 899999999999999999998888888775
No 280
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia. The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....
Probab=34.11 E-value=58 Score=15.62 Aligned_cols=19 Identities=32% Similarity=0.522 Sum_probs=9.4
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHH
Q psy164 109 LDKEYLTKLMIEEGEPFTPEEIDE 132 (161)
Q Consensus 109 I~~~el~~~l~~~g~~~~~~~~~~ 132 (161)
++.+||..++ | ++.+++..
T Consensus 2 Lsd~dF~~vF---g--m~~~eF~~ 20 (36)
T PF02209_consen 2 LSDEDFEKVF---G--MSREEFYK 20 (36)
T ss_dssp S-HHHHHHHH---S--S-HHHHHH
T ss_pred cCHHHHHHHH---C--CCHHHHHH
Confidence 5566666655 4 55555443
No 281
>KOG1954|consensus
Probab=33.74 E-value=92 Score=24.09 Aligned_cols=56 Identities=11% Similarity=0.057 Sum_probs=41.7
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHH
Q psy164 18 ADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPI 76 (161)
Q Consensus 18 ~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~ 76 (161)
-++|..+.+ -+|+|+...-..-+- +..++...+-+++...|.+.+|.++-+||.-.
T Consensus 447 de~fy~l~p-~~gk~sg~~ak~~mv--~sklpnsvlgkiwklad~d~dg~ld~eefala 502 (532)
T KOG1954|consen 447 DEIFYTLSP-VNGKLSGRNAKKEMV--KSKLPNSVLGKIWKLADIDKDGMLDDEEFALA 502 (532)
T ss_pred Hhhhhcccc-cCceeccchhHHHHH--hccCchhHHHhhhhhhcCCcccCcCHHHHHHH
Confidence 456776655 378888766555433 34566778889999999999999999999754
No 282
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=33.63 E-value=91 Score=17.44 Aligned_cols=32 Identities=25% Similarity=0.238 Sum_probs=22.6
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHhhcc
Q psy164 107 SYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAV 138 (161)
Q Consensus 107 g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d 138 (161)
..-+.+||...|...|..+|..-+..-++...
T Consensus 18 ~i~sQ~eL~~~L~~~Gi~vTQaTiSRDLkeL~ 49 (70)
T PF01316_consen 18 EISSQEELVELLEEEGIEVTQATISRDLKELG 49 (70)
T ss_dssp ---SHHHHHHHHHHTT-T--HHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHcCCCcchhHHHHHHHHcC
Confidence 46688899999999999999988888877754
No 283
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=33.43 E-value=72 Score=16.16 Aligned_cols=32 Identities=19% Similarity=0.359 Sum_probs=20.9
Q ss_pred CCccc-HHHHHHHHHHcCCCCCHHHHHHHHhhc
Q psy164 106 KSYLD-KEYLTKLMIEEGEPFTPEEIDEMMSTA 137 (161)
Q Consensus 106 ~g~I~-~~el~~~l~~~g~~~~~~~~~~~~~~~ 137 (161)
.|.|+ ...+-..|...|..+++..+..+++.+
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEILRRA 47 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHHHHHc
Confidence 56676 334444455567888888888877654
No 284
>PLN02859 glutamine-tRNA ligase
Probab=33.34 E-value=3.1e+02 Score=23.49 Aligned_cols=48 Identities=17% Similarity=0.255 Sum_probs=36.0
Q ss_pred CcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhc
Q psy164 89 ASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTA 137 (161)
Q Consensus 89 ~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 137 (161)
.+...+..|++.+...+...++..+|...+- .|..+|++++...+..+
T Consensus 84 kT~~Ql~AA~kYl~~~~~~~~d~~~Fek~CG-VGV~VT~EqI~~~V~~~ 131 (788)
T PLN02859 84 KTPAQLEAAFSFFSSTGPESFDLNKFEEACG-VGVVVSPEDIEAAVNEV 131 (788)
T ss_pred CCHHHHHHHHHHHHhCCCCccCHHHHHHhCC-CCEEECHHHHHHHHHHH
Confidence 5567888999988655566788888877653 36778999988877754
No 285
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=33.04 E-value=1e+02 Score=17.74 Aligned_cols=48 Identities=13% Similarity=0.182 Sum_probs=34.9
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhccCCCCCceeHHHHHHHHhcc
Q psy164 105 NKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIMKS 157 (161)
Q Consensus 105 ~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 157 (161)
+.|.|+.++...+-. .+.+.+....++.... ..|...+.-|++.|...
T Consensus 26 ~~~Vit~e~~~~I~a---~~T~~~kar~Lld~l~--~kG~~A~~~F~~~L~e~ 73 (82)
T cd08330 26 GKKVITQEQYSEVRA---EKTNQEKMRKLFSFVR--SWGASCKDIFYQILREE 73 (82)
T ss_pred HCCCCCHHHHHHHHc---CCCcHHHHHHHHHHHH--ccCHHHHHHHHHHHHHh
Confidence 468888887777664 4466777777777763 46778889999988743
No 286
>PF11363 DUF3164: Protein of unknown function (DUF3164); InterPro: IPR021505 This entry is represented by Bacteriophage B3, Orf6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=32.70 E-value=1.7e+02 Score=20.16 Aligned_cols=57 Identities=16% Similarity=0.131 Sum_probs=34.4
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCCCCCCcHHHHHHHHHhh
Q psy164 37 VGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTL 101 (161)
Q Consensus 37 l~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 101 (161)
+..++..+--....+-...+...|..+..|.|+....+.+......+ +.+..+++.+
T Consensus 105 Ide~l~~w~~g~~~~l~~lV~~af~~dk~G~l~~~rIl~Lrrl~i~D--------~~w~~am~aI 161 (195)
T PF11363_consen 105 IDECLNEWAKGADPELRALVNRAFQVDKEGNLNTSRILGLRRLEIDD--------ERWQEAMDAI 161 (195)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHhcCCCCCcCHHHHHHHHhccCCC--------HHHHHHHHHH
Confidence 44555554333333333344567777889999999888877764322 4555555555
No 287
>TIGR01209 RNA ligase, Pab1020 family. Members of this family are found, so far, in a single copy per genome and largely in thermophiles, of which only Aquifex aeolicus is bacterial rather than archaeal. PSI-BLAST converges after a single iteration to the whole of this family and reveals no convincing similarity to any other protein. The member protein Pab1020 has been characterized as an RNA ligase with circularization activity.
Probab=32.32 E-value=1.5e+02 Score=22.76 Aligned_cols=102 Identities=18% Similarity=0.098 Sum_probs=52.1
Q ss_pred HhhCCCCCCcccHHHHHHHHHHhCCCC-------CHH----HHHHHHHHhCCCC-CCccchhh---HHHHHHHhhhcCCC
Q psy164 22 DIFDHAGNKTIDCREVGTVLRALGGCP-------TEA----DIQEIIVTCENPE-FGNIALSR---FLPIVSGMISENRF 86 (161)
Q Consensus 22 ~~~D~~~~g~i~~~el~~~l~~l~~~~-------~~~----~~~~l~~~~d~~~-~~~i~~~e---f~~~~~~~~~~~~~ 86 (161)
..+|.+.+..++.++-..++..+|++. +.. ++..++..++..+ .|.| +.+ -..-+.....
T Consensus 164 DI~d~~t~~~L~~~er~~l~e~yglp~Vpvlg~~~~~~~~~~~~eii~~L~~~gREGVV-lK~~~~~~~~~KYtT~---- 238 (374)
T TIGR01209 164 DIREGKTNRSLPVEERLELAEKYGLPHVEILGVYTADEAVEEIYEIIERLNKEGREGVV-MKDPEMRVKPLKYTTS---- 238 (374)
T ss_pred EEEECCCCccCCHHHHHHHHHHCCCCccceeeEEcHHHHHHHHHHHHHHhhhcCcceEE-EcCccccCCcceeecC----
Confidence 333445577899999999999888754 222 3445555555444 3332 211 1111111111
Q ss_pred CCCcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHH
Q psy164 87 QPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEE 129 (161)
Q Consensus 87 ~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~ 129 (161)
..+...++.+|+.+=.-+.++....=++.++...-...+.++
T Consensus 239 -~~n~~Di~~~~~~~~d~g~df~~sRi~Re~f~~~E~~~~~~e 280 (374)
T TIGR01209 239 -YANINDIKYAARYFFELGRDFFFSRILREAFQSYEFGEKGEE 280 (374)
T ss_pred -ccChHHHHHHHhhccccCchHHHHHHHHHHHHHHHhCCchHH
Confidence 144566677777653345555555545555544333344433
No 288
>smart00153 VHP Villin headpiece domain.
Probab=32.26 E-value=66 Score=15.38 Aligned_cols=19 Identities=32% Similarity=0.504 Sum_probs=9.9
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHH
Q psy164 109 LDKEYLTKLMIEEGEPFTPEEIDE 132 (161)
Q Consensus 109 I~~~el~~~l~~~g~~~~~~~~~~ 132 (161)
++.+||..++ | ++.+++..
T Consensus 2 LsdeeF~~vf---g--msr~eF~~ 20 (36)
T smart00153 2 LSDEDFEEVF---G--MTREEFYK 20 (36)
T ss_pred CCHHHHHHHH---C--CCHHHHHh
Confidence 4556666555 4 45444443
No 289
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=32.14 E-value=1e+02 Score=18.74 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=23.7
Q ss_pred CCCcccHH----HHHHHHHHcCCCCCHHHHHHHHhhc
Q psy164 105 NKSYLDKE----YLTKLMIEEGEPFTPEEIDEMMSTA 137 (161)
Q Consensus 105 ~~g~I~~~----el~~~l~~~g~~~~~~~~~~~~~~~ 137 (161)
++|.-=.+ -+...|...|.++|+++++.+++..
T Consensus 64 ~~G~~K~~~A~~~v~~~L~~~gi~~t~~~i~~~IEaA 100 (108)
T PF09682_consen 64 GKGEEKKAEAVQYVKERLKKKGIKVTDEQIEGAIEAA 100 (108)
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 35554444 4556677789999999999888764
No 290
>PF08730 Rad33: Rad33; InterPro: IPR014841 Rad33 is involved in nucleotide excision repair (NER). NER is the main pathway for repairing DNA lesions induced by UV. Cells deleted for RAD33 display intermediate UV sensitivity that is epistatic with NER [].
Probab=31.64 E-value=1.6e+02 Score=19.72 Aligned_cols=111 Identities=13% Similarity=0.172 Sum_probs=68.1
Q ss_pred cCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCH-HHHHHHH----HHhCCCC---C-------------
Q psy164 7 VHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTE-ADIQEII----VTCENPE---F------------- 65 (161)
Q Consensus 7 ~~l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~-~~~~~l~----~~~d~~~---~------------- 65 (161)
..+.++-..++.++|..+-.+ ++-+..+++..++..|.++..- .++...+ ....... +
T Consensus 6 ~ki~~EiEDEILe~Ya~~~~~-~~D~~l~~Lp~~f~~L~IP~cfT~DI~~cidyyY~~i~~~~~~i~~tn~kq~it~~mi 84 (170)
T PF08730_consen 6 EKIPPEIEDEILEAYAEYTED-EQDMTLKDLPNYFEDLQIPKCFTKDINECIDYYYKFIRSKDVCIEGTNPKQDITLQMI 84 (170)
T ss_pred ccCChHHHHHHHHHHHHhcCC-ccceeHHHHHHHHHHcCCChHHHHhHHHHHHHHHHhcccCceeecCcchhHHHHHHHH
Confidence 357788889999999988654 5668889999999988876432 1222111 1111110 1
Q ss_pred ----------------CccchhhHHHHHHHhhhcCCCCCCcHHHHHHHHHhhCC-CCCC-----------cccHHHHHHH
Q psy164 66 ----------------GNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDK-DNKS-----------YLDKEYLTKL 117 (161)
Q Consensus 66 ----------------~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~-~~~g-----------~I~~~el~~~ 117 (161)
..|+|.-.+.....++.-+ +...-+...|+++=. .+.+ .++..+|+++
T Consensus 85 ~a~t~s~~~~~~~di~DIVDfdKLl~~t~~LL~Fm----dN~~~Id~~W~L~V~~sgr~~~~~~v~l~~h~LslkDLqki 160 (170)
T PF08730_consen 85 HAYTISSSIKNPDDIIDIVDFDKLLRNTYRLLIFM----DNEEHIDESWKLFVTASGRDTQFPNVELKNHVLSLKDLQKI 160 (170)
T ss_pred HHhhccccccccccccceeeHHHHHHHHHHHHhcc----chHHHHHHHHHHHHHhcCCCCCCcchhhhhceechHHHHHH
Confidence 3567777777666665543 677788888888721 1111 2556666666
Q ss_pred HHHcC
Q psy164 118 MIEEG 122 (161)
Q Consensus 118 l~~~g 122 (161)
-..+|
T Consensus 161 k~~l~ 165 (170)
T PF08730_consen 161 KNSLN 165 (170)
T ss_pred HHHhC
Confidence 55554
No 291
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=31.56 E-value=1.2e+02 Score=17.99 Aligned_cols=49 Identities=14% Similarity=0.168 Sum_probs=35.9
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHh
Q psy164 29 NKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGM 80 (161)
Q Consensus 29 ~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 80 (161)
.|.++.++...+-..-+-......++.++.... .+.+ -|+.|++++...
T Consensus 31 ~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~--aF~~Fl~aLreT 79 (88)
T cd08819 31 QGLLTEEDRNRIEAATENHGNESGARELLKRIV-QKEG--WFSKFLQALRET 79 (88)
T ss_pred cCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCc--HHHHHHHHHHHc
Confidence 568888887777665555566788888888886 4444 588899988864
No 292
>PLN02223 phosphoinositide phospholipase C
Probab=31.42 E-value=2.9e+02 Score=22.48 Aligned_cols=24 Identities=13% Similarity=-0.079 Sum_probs=11.0
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHH
Q psy164 17 IADAFDIFDHAGNKTIDCREVGTVL 41 (161)
Q Consensus 17 l~~~f~~~D~~~~g~i~~~el~~~l 41 (161)
++.+|..+- .+.|.++...+..+|
T Consensus 18 v~~~f~~~~-~~~~~m~~~~l~~fl 41 (537)
T PLN02223 18 ILNFFGNEF-HGYDDDMPELLPRFI 41 (537)
T ss_pred HHHHHHHhh-cCCCCCCHHHHHHHH
Confidence 344444442 334455555555444
No 293
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=31.42 E-value=81 Score=17.77 Aligned_cols=16 Identities=19% Similarity=0.192 Sum_probs=13.5
Q ss_pred CCCcccHHHHHHHHHH
Q psy164 105 NKSYLDKEYLTKLMIE 120 (161)
Q Consensus 105 ~~g~I~~~el~~~l~~ 120 (161)
..|.++-+||.+++..
T Consensus 27 ~~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 27 ASGKLRGEEINSLLEA 42 (75)
T ss_pred HcCcccHHHHHHHHHH
Confidence 5799999999988865
No 294
>KOG0148|consensus
Probab=31.37 E-value=6.3 Score=28.34 Aligned_cols=31 Identities=23% Similarity=0.225 Sum_probs=16.8
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHcCC
Q psy164 93 ELLKAFRTLDKDNKSYLDKEYLTKLMIEEGE 123 (161)
Q Consensus 93 ~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~ 123 (161)
.+...|..|-.+=.-.|+-+.|+.++..+|+
T Consensus 58 t~~~hfhvfvgdls~eI~~e~lr~aF~pFGe 88 (321)
T KOG0148|consen 58 TSNQHFHVFVGDLSPEIDNEKLREAFAPFGE 88 (321)
T ss_pred ccccceeEEehhcchhcchHHHHHHhccccc
Confidence 3444555554444455666666666666653
No 295
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=30.39 E-value=2e+02 Score=20.47 Aligned_cols=50 Identities=14% Similarity=0.213 Sum_probs=36.1
Q ss_pred CCcccHHHHHHHHHHhCC------CCCHHHHHHHHHHhCCCCC-CccchhhHHHHHH
Q psy164 29 NKTIDCREVGTVLRALGG------CPTEADIQEIIVTCENPEF-GNIALSRFLPIVS 78 (161)
Q Consensus 29 ~g~i~~~el~~~l~~l~~------~~~~~~~~~l~~~~d~~~~-~~i~~~ef~~~~~ 78 (161)
.|.+-.+.+..++.+++. .|.+++-..++..+.++-+ ++|+++|-+.+-.
T Consensus 168 ~g~~r~d~v~~i~~~l~~eklifEAp~k~~q~~~I~~~G~~VNL~NI~~~evi~LE~ 224 (237)
T TIGR03849 168 KGNVKEDELDVLAENVDINKVIFEAPQKNQQVEFILKFGPDVNLGNIPPEEVISLET 224 (237)
T ss_pred CCCCchHHHHHHHhhCChhcEEEECCCHHHHHHHHHHhCCCcccccCCHHHHHHHHH
Confidence 455667778888887764 3566667778888887777 7899888776543
No 296
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=29.94 E-value=1.4e+02 Score=18.40 Aligned_cols=41 Identities=17% Similarity=0.264 Sum_probs=21.8
Q ss_pred HHHHHHHcCCCCCHHHHHHHHhhccCCCCCceeHHHHHHHH
Q psy164 114 LTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHI 154 (161)
Q Consensus 114 l~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 154 (161)
+.+++.-+...++.+|-..+....+.-.+|.|++..-+.++
T Consensus 55 l~Hi~Gyfk~~ls~~EK~~~~~~i~~yr~g~i~l~~~l~~L 95 (117)
T PF08349_consen 55 LQHIFGYFKKKLSSEEKQHFLDLIEDYREGKIPLSVPLTLL 95 (117)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 44444444445565555555555555555566655554444
No 297
>PF03250 Tropomodulin: Tropomodulin; InterPro: IPR004934 Actin filaments have an intrinsic polarity, each with a fast-growing (barbed) end and a slow-growing (pointed) end. To regulate the dynamics at these ends, capping proteins have evolved that specifically bind to either the barbed or the pointed ends of the filament, where they block the association and dissociation of monomers. Pointed ends, for which actin monomers have significantly lower association and dissociation rate-constants than for barbed, are capped by either the Arp2/3 complex or tropomodulins []. Tropomodulin is a novel tropomyosin regulatory protein that binds to the end of erythrocyte tropomyosin and blocks head-to-tail association of tropomyosin along actin filaments []. Limited proteolysis shows this protein is composed of two domains. The unstructured tropomyosin-binding region at the N terminus has an actin pointed-end-capping activity that is dramatically up-regulated by tropomyosin coating of the actin filament[]. The second region is found near the C terminus. This tropomyosin-independent capping-domain caps pure actin. ; GO: 0005523 tropomyosin binding, 0005856 cytoskeleton
Probab=29.85 E-value=1.6e+02 Score=19.20 Aligned_cols=22 Identities=5% Similarity=0.226 Sum_probs=16.4
Q ss_pred cCCCHHHHHHHHHHHHhhCCCC
Q psy164 7 VHITNDFEKKIADAFDIFDHAG 28 (161)
Q Consensus 7 ~~l~~~~~~~l~~~f~~~D~~~ 28 (161)
.+||++++++|......+|+++
T Consensus 22 ~~LS~EEL~~L~~el~e~DPd~ 43 (147)
T PF03250_consen 22 AKLSPEELEELENELEEMDPDN 43 (147)
T ss_pred HhCCHHHHHHHHHHHHhhCCCc
Confidence 3678888888887777777754
No 298
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=29.80 E-value=96 Score=24.58 Aligned_cols=41 Identities=20% Similarity=0.308 Sum_probs=36.1
Q ss_pred ccccCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q psy164 4 SEEVHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRAL 44 (161)
Q Consensus 4 ~~~~~l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l 44 (161)
++-.+|++-|.--|.-+|..+|..+=-.|+.++|+.+|.-+
T Consensus 117 srlL~LNdtQ~gvL~i~F~~ADd~gLlLlDLkDLra~l~~v 157 (502)
T PF05872_consen 117 SRLLELNDTQEGVLNIVFRIADDEGLLLLDLKDLRAMLQYV 157 (502)
T ss_pred HHHhccchHHHHHHHHHHHHhccCCCccccHHHHHHHHHHH
Confidence 55678899999999999999999888889999999999855
No 299
>KOG2525|consensus
Probab=29.66 E-value=68 Score=25.39 Aligned_cols=67 Identities=19% Similarity=0.287 Sum_probs=40.3
Q ss_pred chhhHHHHHHHhhhcCCCCCCcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhccCCCCCce
Q psy164 69 ALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRI 145 (161)
Q Consensus 69 ~~~ef~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i 145 (161)
.|++++..+..+... ..+-..-+.-+ +.++..+..++.++|+.+|.+ .+..--.+++.+++++.|.+
T Consensus 20 ~~~~~v~~lnsLqsn--------~~~i~~~~~~~-~~~~~~~l~~m~~~L~~lg~p-~d~~~l~iIHVAGTkGKGSt 86 (496)
T KOG2525|consen 20 TYEDAVRYLNSLQSN--------AALIEKLRRQD-DNPQGLTLPRMRKLLERLGNP-EDQNSLNIIHVAGTKGKGST 86 (496)
T ss_pred hHHHHHHHHHHHHhH--------HHhhhhhhhcc-CCccccCHHHHHHHHHHhCCh-hhhhheeEEEEecCCCCcch
Confidence 467777777665322 22222223333 456778889999999999965 33333335666777777654
No 300
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed
Probab=29.65 E-value=1.8e+02 Score=19.51 Aligned_cols=43 Identities=9% Similarity=-0.156 Sum_probs=27.1
Q ss_pred cccCCCHHHHHHHHHHHHhhCCCC-------------CCcccHHHHHHHHHHhCCC
Q psy164 5 EEVHITNDFEKKIADAFDIFDHAG-------------NKTIDCREVGTVLRALGGC 47 (161)
Q Consensus 5 ~~~~l~~~~~~~l~~~f~~~D~~~-------------~g~i~~~el~~~l~~l~~~ 47 (161)
....++++..+++.++...+.... -|+|+.+.+..+-..+|++
T Consensus 12 ~~~~~~~~~~~~i~~ii~~~~~~~~~li~~L~~iQ~~~GyIp~e~~~~iA~~l~v~ 67 (169)
T PRK07571 12 ATHPSGDKRFKVLEATMKRNQYRQDALIEVLHKAQELFGYLERDLLLYVARQLKLP 67 (169)
T ss_pred ccCcCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcC
Confidence 345788888888888888776432 3455555555555555543
No 301
>TIGR02933 nifM_nitrog nitrogen fixation protein NifM. Members of this protein family, found in a subset of nitrogen-fixing bacteria, are the nitrogen fixation protein NifM. NifM, homologous to peptidyl-prolyl cis-trans isomerases, appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase.
Probab=29.57 E-value=2.1e+02 Score=20.38 Aligned_cols=67 Identities=7% Similarity=0.026 Sum_probs=40.6
Q ss_pred ccCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC-CCCccchhhHHHHHH
Q psy164 6 EVHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENP-EFGNIALSRFLPIVS 78 (161)
Q Consensus 6 ~~~l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~-~~~~i~~~ef~~~~~ 78 (161)
...+|+++..++..-+.. ..|...-+.......|+.+++.++......+... ....+++..|-..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~------~lI~e~l~lq~A~~~gi~v~~~ev~~~~e~~~~~L~~~G~~~~~~r~~ir 83 (256)
T TIGR02933 16 PGELSPDQLQQFDQAWQR------QRHIEQAVVRAADEIGVVIPPSLLEEAPQALAQALDEQALDAAERRAMLA 83 (256)
T ss_pred CCCCCHHHHHHHHHHHHH------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 456788887777655443 3455555566667889999998884443322110 023378888866544
No 302
>KOG4403|consensus
Probab=29.42 E-value=2.8e+02 Score=21.83 Aligned_cols=100 Identities=14% Similarity=0.098 Sum_probs=60.1
Q ss_pred CCCcccHHHHHHHHHHhC----CCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCCCCCCcHHHHHHHHHhhCC
Q psy164 28 GNKTIDCREVGTVLRALG----GCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDK 103 (161)
Q Consensus 28 ~~g~i~~~el~~~l~~l~----~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~ 103 (161)
|+...+..||+.+..... -.+.-+.++.+-+.+|.+.+|.|+.+|=-.+++.-+..+ .....-...|..
T Consensus 41 gds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~----~~~~kr~~~fH~--- 113 (575)
T KOG4403|consen 41 GDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYR----DSTRKRSEKFHG--- 113 (575)
T ss_pred CCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcc----cchhhhhhhccC---
Confidence 444555666655443221 134456778888889988899999999888887765542 233333335553
Q ss_pred CCCCcccHHHHHHHHHHc-CCCCCHHH-HHHHHh
Q psy164 104 DNKSYLDKEYLTKLMIEE-GEPFTPEE-IDEMMS 135 (161)
Q Consensus 104 ~~~g~I~~~el~~~l~~~-g~~~~~~~-~~~~~~ 135 (161)
.+..|++++|=.++..- -.+-|.++ +++++.
T Consensus 114 -dD~~ItVedLWeaW~~Sev~nWT~e~tvqWLi~ 146 (575)
T KOG4403|consen 114 -DDKHITVEDLWEAWKESEVHNWTNERTVQWLIN 146 (575)
T ss_pred -CccceeHHHHHHHHHhhhhhcchHHHHHHHHHH
Confidence 35669999987777653 23444443 344443
No 303
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=29.39 E-value=1.6e+02 Score=18.78 Aligned_cols=47 Identities=17% Similarity=0.320 Sum_probs=19.5
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHhhccC-CCCCceeHHHHHHHHh
Q psy164 109 LDKEYLTKLMIEEGEPFTPEEIDEMMSTAVD-QDTGRIPYEYYINHIM 155 (161)
Q Consensus 109 I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~-~~~g~i~~~eF~~~l~ 155 (161)
|...=+.+.-+..|..+++.++...+...-. ..+|..+.+.|.+++.
T Consensus 84 I~~~ll~q~A~~~gi~vsd~ev~~~i~~~~~f~~~g~~~~~~f~~~L~ 131 (154)
T PF13624_consen 84 IDQKLLLQEAKKLGISVSDAEVDDAIKQIPAFQENGKFDKEAFEEFLK 131 (154)
T ss_dssp HHHHHHHHHHHHTT----HHHHHHHHHH--HHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 3333344444556777777777766665210 1135555566665554
No 304
>PRK00441 argR arginine repressor; Provisional
Probab=28.67 E-value=1.7e+02 Score=19.06 Aligned_cols=34 Identities=15% Similarity=0.110 Sum_probs=29.0
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcc
Q psy164 105 NKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAV 138 (161)
Q Consensus 105 ~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d 138 (161)
..+..+.+|+.+.|...|..+|..-+..-++...
T Consensus 15 ~~~~~~q~eL~~~L~~~G~~vSqaTisRDl~~L~ 48 (149)
T PRK00441 15 SKEIETQEELAEELKKMGFDVTQATVSRDIKELK 48 (149)
T ss_pred HcCCCcHHHHHHHHHhcCCCcCHHHHHHHHHHcC
Confidence 4678899999999999999999988888777654
No 305
>PHA02943 hypothetical protein; Provisional
Probab=28.61 E-value=1.8e+02 Score=19.27 Aligned_cols=94 Identities=10% Similarity=0.207 Sum_probs=60.4
Q ss_pred ccCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCC------CCccc-----hhhHH
Q psy164 6 EVHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPE------FGNIA-----LSRFL 74 (161)
Q Consensus 6 ~~~l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~------~~~i~-----~~ef~ 74 (161)
+.++|.....++.++...+ ..|.-+..++...+ | ++..+++-.+.....++ -|..+ -..+.
T Consensus 2 Pr~~sd~v~~R~~eILE~L---k~G~~TtseIAkaL---G--lS~~qa~~~LyvLErEG~VkrV~~G~~tyw~l~~day~ 73 (165)
T PHA02943 2 PRGMSDTVHTRMIKTLRLL---ADGCKTTSRIANKL---G--VSHSMARNALYQLAKEGMVLKVEIGRAAIWCLDEDAYT 73 (165)
T ss_pred CcchhHHHHHHHHHHHHHH---hcCCccHHHHHHHH---C--CCHHHHHHHHHHHHHcCceEEEeecceEEEEEChHHHH
Confidence 3567778888888888888 57777888888654 4 55667777666664433 12222 22233
Q ss_pred HHHHHhhhcCCCCCCcHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q psy164 75 PIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIE 120 (161)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~ 120 (161)
..+. +.++.+++..-.++-.+|++..+...+..
T Consensus 74 ~~v~-------------~~~Relwrlv~s~~~kfi~p~~l~~li~k 106 (165)
T PHA02943 74 NLVF-------------EIKRELWRLVCNSRLKFITPSRLLRLIAK 106 (165)
T ss_pred HHHH-------------HHHHHHHHHHHhccccccChHHHHHHHHh
Confidence 3222 45566777777777888888888777643
No 306
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=28.61 E-value=77 Score=15.05 Aligned_cols=16 Identities=19% Similarity=0.310 Sum_probs=9.7
Q ss_pred cHHHHHHHHHHcCCCC
Q psy164 110 DKEYLTKLMIEEGEPF 125 (161)
Q Consensus 110 ~~~el~~~l~~~g~~~ 125 (161)
+.++|+..|...|...
T Consensus 5 s~~~L~~wL~~~gi~~ 20 (38)
T PF10281_consen 5 SDSDLKSWLKSHGIPV 20 (38)
T ss_pred CHHHHHHHHHHcCCCC
Confidence 4456777777666443
No 307
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=28.52 E-value=2.2e+02 Score=20.34 Aligned_cols=52 Identities=10% Similarity=0.139 Sum_probs=32.0
Q ss_pred cccCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Q psy164 5 EEVHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCE 61 (161)
Q Consensus 5 ~~~~l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d 61 (161)
++.++++++++.++++|+.+=.. .++.++-...++.. .+..++++.+++-+.
T Consensus 196 ~r~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~f~~ 247 (255)
T PRK12461 196 RRRGFSSRAIRALKRAYKIIYRS---GLSVQQAVAELELQ--QFESPEVEELIDFIK 247 (255)
T ss_pred hhcCCCHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHh--ccCCHHHHHHHHHHH
Confidence 56789999999999999877543 23444443434432 123345666665554
No 308
>PRK09462 fur ferric uptake regulator; Provisional
Probab=28.44 E-value=1.7e+02 Score=18.81 Aligned_cols=50 Identities=12% Similarity=0.082 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Q psy164 8 HITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCE 61 (161)
Q Consensus 8 ~l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d 61 (161)
.+|+....-+..+. ...++.++.+++...|+.-+..++...+.+.+..+.
T Consensus 14 r~T~qR~~Il~~l~----~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~ 63 (148)
T PRK09462 14 KVTLPRLKILEVLQ----EPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFD 63 (148)
T ss_pred CCCHHHHHHHHHHH----hCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Confidence 45555544333322 223467899999998888877777777777776663
No 309
>PHA02773 hypothetical protein; Provisional
Probab=28.26 E-value=75 Score=18.78 Aligned_cols=30 Identities=7% Similarity=0.228 Sum_probs=20.0
Q ss_pred ccccCCCHHHHHHHHHHHHhhCCCCCCccc
Q psy164 4 SEEVHITNDFEKKIADAFDIFDHAGNKTID 33 (161)
Q Consensus 4 ~~~~~l~~~~~~~l~~~f~~~D~~~~g~i~ 33 (161)
.....+-+.|.+-+...|.....|.+|-+.
T Consensus 16 e~qi~lr~kqkell~rffeiae~de~gdlc 45 (112)
T PHA02773 16 EKQIKLRPKQKELLIRFFEIAEKDEDGDLC 45 (112)
T ss_pred hhceeechhhHHHHHHHHHHheecCCCCEE
Confidence 344567777777777777777666666543
No 310
>TIGR02613 mob_myst_B mobile mystery protein B. Members of this protein family, which we designate mobile mystery protein B, are found in mobization-related contexts more often than not, including within a CRISPR-associated gene region in Geobacter sulfurreducens PCA, and on plasmids in Agrobacterium tumefaciens and Coxiella burnetii, always together with mobile mystery protein A (TIGR02612), a member of the family of helix-turn-helix DNA binding proteins (pfam01381). This protein is encoded by the downstream member of the gene pair and belongs to the Fic protein family (pfam02661), where Fic (filamentation induced by cAMP) is a regulator of cell division. The characteristics of having a two-gene operon in a varied context and often on plasmids, with one member affecting cell division and the other able to bind DNA, suggests similarity to addiction modules.
Probab=28.05 E-value=1e+02 Score=20.78 Aligned_cols=20 Identities=20% Similarity=0.131 Sum_probs=9.9
Q ss_pred CCCCcccHHHHHHHHHHhCC
Q psy164 27 AGNKTIDCREVGTVLRALGG 46 (161)
Q Consensus 27 ~~~g~i~~~el~~~l~~l~~ 46 (161)
||||++.+-=+..+|.+.|+
T Consensus 127 DGNGRt~Rll~~l~L~~~g~ 146 (186)
T TIGR02613 127 NGNGRHARLATDLLLEQQGY 146 (186)
T ss_pred CCCcHHHHHHHHHHHHHCCC
Confidence 45555555444444444444
No 311
>PF14069 SpoVIF: Stage VI sporulation protein F
Probab=28.04 E-value=1.3e+02 Score=17.39 Aligned_cols=34 Identities=12% Similarity=0.272 Sum_probs=24.1
Q ss_pred cCCCCCHHHHHHHHhhccCCCCCceeHHHHHHHHh
Q psy164 121 EGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIM 155 (161)
Q Consensus 121 ~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 155 (161)
.|.+++++..+.+++..-.++- ..+...+.+.|.
T Consensus 44 an~~Vs~~~ed~IV~~I~~~~~-p~d~~~l~Km~~ 77 (79)
T PF14069_consen 44 ANKPVSKEQEDQIVQAIINQKI-PNDMNHLMKMMN 77 (79)
T ss_pred hCCCCCHHHHHHHHHHHHhCCC-CcCHHHHHHHHc
Confidence 4788888888888887744444 667777776664
No 312
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=27.85 E-value=72 Score=14.47 Aligned_cols=14 Identities=14% Similarity=-0.026 Sum_probs=10.3
Q ss_pred CCcccHHHHHHHHH
Q psy164 29 NKTIDCREVGTVLR 42 (161)
Q Consensus 29 ~g~i~~~el~~~l~ 42 (161)
.|.||.+|+...-.
T Consensus 14 ~G~IseeEy~~~k~ 27 (31)
T PF09851_consen 14 KGEISEEEYEQKKA 27 (31)
T ss_pred cCCCCHHHHHHHHH
Confidence 67888888876544
No 313
>PF13075 DUF3939: Protein of unknown function (DUF3939)
Probab=27.85 E-value=39 Score=21.74 Aligned_cols=19 Identities=16% Similarity=0.114 Sum_probs=8.8
Q ss_pred CCCCceeHHHHHHHHhccc
Q psy164 140 QDTGRIPYEYYINHIMKSE 158 (161)
Q Consensus 140 ~~~g~i~~~eF~~~l~~~~ 158 (161)
+.|..|+|+....+|-+.|
T Consensus 37 ~~d~~iD~~~L~~yL~g~p 55 (140)
T PF13075_consen 37 NDDQSIDFERLAPYLGGIP 55 (140)
T ss_pred cCCceecHHHHhhhcCCCC
Confidence 3444455554444444433
No 314
>TIGR02522 pilus_cpaD pilus (Caulobacter type) biogenesis lipoprotein CpaD. This family consists of a pilus biogenesis protein, CpaD, from Caulobacter, and homologs in other bacteria, including three in the root nodule bacterium Bradyrhizobium japonicum. The molecular function is not known.
Probab=27.56 E-value=2e+02 Score=19.85 Aligned_cols=68 Identities=10% Similarity=0.185 Sum_probs=45.4
Q ss_pred ccCCCHHHHHHHHHHHHhhCCCCCCccc-----------HHHHHHHHHHhCCCCCHHHHHHHHHHhCCCC--CCccchhh
Q psy164 6 EVHITNDFEKKIADAFDIFDHAGNKTID-----------CREVGTVLRALGGCPTEADIQEIIVTCENPE--FGNIALSR 72 (161)
Q Consensus 6 ~~~l~~~~~~~l~~~f~~~D~~~~g~i~-----------~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~--~~~i~~~e 72 (161)
..+|+..+...|...+..+...+.|.|. ..+++.+|...|+.+.. +......-+... .=.|.|..
T Consensus 52 ~~~Lt~~qr~~l~~f~~~~~~~g~~~i~i~~psgaa~~~~~~ir~~L~~~Gv~~~~--~~~~~~~~~~~~~a~irl~~~~ 129 (198)
T TIGR02522 52 DRGLSASQQDQLLGFLKDWGRASAQTLTLIIPSAAAEAMAGEIRRVLAASGVGARN--VKVMYRATASGDTGPIRVSYVA 129 (198)
T ss_pred CCCCCHHHHHHHHHHHHHHhhcCCceEEEecChhHHHHHHHHHHHHHHHcCCChhc--ceeecccCCCCCCCCEEEEEEE
Confidence 3569999999999999999888888765 34688888888887765 322222222222 23466666
Q ss_pred HHH
Q psy164 73 FLP 75 (161)
Q Consensus 73 f~~ 75 (161)
+..
T Consensus 130 ~~A 132 (198)
T TIGR02522 130 YVA 132 (198)
T ss_pred EEE
Confidence 554
No 315
>cd07311 terB_like_1 tellurium resistance terB-like protein, subgroup 1. This family includes several uncharacterized bacterial proteins. The prototype of this CD is tellurite resistance protein from Nostoc punctiforme that belongs to COG3793. Its precise biological function and its mechanism responsible for tellurium resistance still remains rather poorly understood.
Probab=27.01 E-value=1.9e+02 Score=18.93 Aligned_cols=110 Identities=13% Similarity=0.071 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCCCCCC
Q psy164 11 NDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALG-GCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQPA 89 (161)
Q Consensus 11 ~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~-~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~ 89 (161)
+++...+......+-+ -||.++..|+..+-.-+. ..++.+....++.. ..+-.++...|.... ... .
T Consensus 20 ~~~~~~~~~~Ll~iAk-ADG~Vse~Ei~~~~~~m~~~~L~~e~~~~aie~---~~~~~L~~~~~~~~~--~~~------~ 87 (150)
T cd07311 20 NQDKLAYLKALLVCAK-GDGVISPEERDWAIGYAAARGGDADMVEELKEY---TADEDLEEVDFRSPN--IKS------S 87 (150)
T ss_pred cccHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHh---CccccHHHHHHHHHh--cch------h
Confidence 4454444333333322 378999988755443221 14556667777766 222223333332222 110 2
Q ss_pred cHHHHHHHHHhhCCCCCCcccHHH---HHHHHHHcCCCCCHHHHHHHHhh
Q psy164 90 SAEELLKAFRTLDKDNKSYLDKEY---LTKLMIEEGEPFTPEEIDEMMST 136 (161)
Q Consensus 90 ~~~~~~~~f~~~D~~~~g~I~~~e---l~~~l~~~g~~~~~~~~~~~~~~ 136 (161)
....+...+.+. --+|.++..| ++++...+| ++..++..+.+.
T Consensus 88 ~~~ll~~~l~vA--~ADG~l~~~E~~lL~~iA~~LG--is~~~~~~l~~~ 133 (150)
T cd07311 88 RRALLYDAIQVC--AADGELSPGEVAAVRKAASLLG--ISEDEVQKLEEI 133 (150)
T ss_pred HHHHHHHHHHHH--HcCCCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence 223333344433 2368888887 455556677 788888777665
No 316
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=26.99 E-value=1.9e+02 Score=19.02 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=13.1
Q ss_pred CCCccchhhHHHHHHHhhh
Q psy164 64 EFGNIALSRFLPIVSGMIS 82 (161)
Q Consensus 64 ~~~~i~~~ef~~~~~~~~~ 82 (161)
.++.|++..|..++...+.
T Consensus 96 ~n~~i~~~~ff~~lQ~~lG 114 (175)
T PF04876_consen 96 TNGLIDIGKFFDILQPKLG 114 (175)
T ss_pred cccceeHHHHHHHHHHHhh
Confidence 3566888888777776544
No 317
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=26.92 E-value=2.1e+02 Score=21.48 Aligned_cols=11 Identities=9% Similarity=0.232 Sum_probs=4.4
Q ss_pred HHHHHHHHHHh
Q psy164 50 EADIQEIIVTC 60 (161)
Q Consensus 50 ~~~~~~l~~~~ 60 (161)
.+++-.++..+
T Consensus 305 Reeal~~v~~~ 315 (343)
T TIGR03573 305 REEAIELVKEY 315 (343)
T ss_pred HHHHHHHHHHh
Confidence 33333444443
No 318
>TIGR02574 stabl_TIGR02574 putative addiction module component, TIGR02574 family. Members of this family are bacterial proteins, typically are about 75 amino acids long, always found as part of a pair (at least) of two small genes. The other in the pair always belongs to a subfamily of the larger family pfam05016 (although not necessarily scoring above the designated cutoff), which contains plasmid stabilization proteins. It is likely that this protein and its pfam05016 member partner comprise some form of addiction module, although these gene pairs usually are found on the bacterial main chromosome.
Probab=26.74 E-value=1.2e+02 Score=16.43 Aligned_cols=9 Identities=22% Similarity=0.383 Sum_probs=4.8
Q ss_pred HHHHHhhCC
Q psy164 18 ADAFDIFDH 26 (161)
Q Consensus 18 ~~~f~~~D~ 26 (161)
..++..++.
T Consensus 13 e~LwdSL~~ 21 (63)
T TIGR02574 13 EDIWDSIAA 21 (63)
T ss_pred HHHHHHhcc
Confidence 455555553
No 319
>cd08813 DED_Caspase_8_repeat2 Death Effector Domain, repeat 2, of Caspase-8. Death effector domain (DED) found in caspase-8 (CASP8, FLICE), repeat 2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-8 is an initiator of death receptor mediated apoptosis. Together with FADD, caspase-10, and the pseudo-caspase c-FLIP, it forms the death-inducing signaling complex (DISC), whose formation is triggered by the activation of type 1 tumor necrosis factor (TNF) receptors such as Fas, TNF receptor 1, and TRAIL receptor. Caspase-8 also plays many important non-apoptotic functions including roles in embryonic development, cell adhesion and motility, immune cell proliferation and differentiation, T-cell activation, and NFkappaB signaling. It contains two N-terminal DED domains and a C-terminal caspase domain. DEDs comprise a subfamily of the
Probab=26.29 E-value=1.4e+02 Score=17.35 Aligned_cols=67 Identities=12% Similarity=0.096 Sum_probs=36.9
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHhCCC-CCCc-cchhhHHHHHHHhhhcCCCCCCcHHHHHHHHHhhC
Q psy164 36 EVGTVLRALGGCPTEADIQEIIVTCENP-EFGN-IALSRFLPIVSGMISENRFQPASAEELLKAFRTLD 102 (161)
Q Consensus 36 el~~~l~~l~~~~~~~~~~~l~~~~d~~-~~~~-i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~f~~~D 102 (161)
.++.+|-+++-.++.+++..+-..+... +.+. =.-..++.++..+.......++....++.++..++
T Consensus 3 ~yR~lL~~Ise~lt~edL~s~kFLl~~~i~k~kle~~~s~Ldlf~eLEk~~~l~~dnl~~L~~il~~i~ 71 (83)
T cd08813 3 AYRVLLFQLSENVTRDELKSFKFLLQNELPKSKLDDETTLLDIFIEMEKKGILGEDNLDMLKRICAKIN 71 (83)
T ss_pred HHHHHHHHHHhhcCHHHHhhhHHHhhccccchHHhhhccHHHHHHHHHhhCCCCCchHHHHHHHHHHHh
Confidence 4667777777778887777665544211 1111 11334555555555554455566666666666543
No 320
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=26.23 E-value=1e+02 Score=24.19 Aligned_cols=33 Identities=12% Similarity=0.102 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhC
Q psy164 12 DFEKKIADAFDIFDHAGNKTIDCREVGTVLRALG 45 (161)
Q Consensus 12 ~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~ 45 (161)
++...+...| .+....++..+.+||...++...
T Consensus 286 ~~~~~i~~ly-~~~~~~~~~pt~eEF~e~v~~~~ 318 (445)
T PF13608_consen 286 KEEDEIEHLY-MLCKKHGKLPTEEEFLEYVEEVN 318 (445)
T ss_pred HHHHHHHHHH-HHHHHhCCCCCHHHHHHHHHhcC
Confidence 3444566666 66555567778888888877443
No 321
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=25.95 E-value=46 Score=20.13 Aligned_cols=54 Identities=13% Similarity=0.100 Sum_probs=28.6
Q ss_pred CcccHHHHHHHHHHcCCCCCHH--HHHHHHhhccCCCCCceeHHHHHHHHhccccC
Q psy164 107 SYLDKEYLTKLMIEEGEPFTPE--EIDEMMSTAVDQDTGRIPYEYYINHIMKSEER 160 (161)
Q Consensus 107 g~I~~~el~~~l~~~g~~~~~~--~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~~ 160 (161)
-.+|.+++..++..+|..+.+- .-...++..+......++-++.++.|..+|..
T Consensus 31 ~p~s~~el~~~l~~~~~~~~~lin~~~~~~k~l~~~~~~~~s~~e~i~~l~~~p~L 86 (110)
T PF03960_consen 31 EPLSREELRELLSKLGNGPDDLINTRSKTYKELGKLKKDDLSDEELIELLLENPKL 86 (110)
T ss_dssp S---HHHHHHHHHHHTSSGGGGB-TTSHHHHHTTHHHCTTSBHHHHHHHHHHSGGG
T ss_pred CCCCHHHHHHHHHHhcccHHHHhcCccchHhhhhhhhhhhhhhHHHHHHHHhChhh
Confidence 3478888888888877321100 00112233321223467888888888888754
No 322
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=25.88 E-value=1.4e+02 Score=17.90 Aligned_cols=29 Identities=17% Similarity=0.287 Sum_probs=19.7
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHhh
Q psy164 108 YLDKEYLTKLMIEEGEPFTPEEIDEMMST 136 (161)
Q Consensus 108 ~I~~~el~~~l~~~g~~~~~~~~~~~~~~ 136 (161)
.|+.++++++.+--...++++++..+...
T Consensus 2 ~i~~e~v~~la~LarL~lseee~e~~~~~ 30 (96)
T COG0721 2 AIDREEVKHLAKLARLELSEEELEKFATQ 30 (96)
T ss_pred ccCHHHHHHHHHHhhcccCHHHHHHHHHH
Confidence 46777888877776666777776654433
No 323
>PF06207 DUF1002: Protein of unknown function (DUF1002); InterPro: IPR009343 This protein family has no known function. Its members are about 300 amino acids in length. It has so far been detected in Firmicute bacteria and some archaebacteria.
Probab=25.86 E-value=1.3e+02 Score=21.26 Aligned_cols=47 Identities=9% Similarity=0.147 Sum_probs=33.7
Q ss_pred cHHHHHHHHH----HcCCCCCHHHHHHHHhhccCCCCCceeHHHHHHHHhc
Q psy164 110 DKEYLTKLMI----EEGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIMK 156 (161)
Q Consensus 110 ~~~el~~~l~----~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 156 (161)
+.++++.+.. ..+..+++++++.+...+..=.+-.+++.+|.+-+.+
T Consensus 173 t~~eI~~IV~~~~~~~~i~ls~~q~~~i~~l~~~~~~~~~~~~~~k~ql~~ 223 (225)
T PF06207_consen 173 TDEEIRNIVNNVLNNYNINLSDEQIQQIVNLMKKIQNLNIDWKQVKEQLNN 223 (225)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 6777666554 4678889999888888876656666777887776543
No 324
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=25.86 E-value=1.6e+02 Score=17.86 Aligned_cols=49 Identities=14% Similarity=0.072 Sum_probs=31.0
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHhh-------ccCCCCCceeHHHHHHHHhccccC
Q psy164 106 KSYLDKEYLTKLMIEEGEPFTPEEIDEMMST-------AVDQDTGRIPYEYYINHIMKSEER 160 (161)
Q Consensus 106 ~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~-------~d~~~~g~i~~~eF~~~l~~~~~~ 160 (161)
.-.+|.+++..++..+|.. +..++.. .+.+ ...++-++.++.|..+|..
T Consensus 33 ~~~~t~~el~~~l~~~~~~-----~~~lin~~~~~y~~l~~~-~~~ls~~e~i~ll~~~P~L 88 (112)
T cd03034 33 KTPPTAAELRELLAKLGIS-----PRDLLRTKEAPYKELGLA-DPELSDEELIDAMAAHPIL 88 (112)
T ss_pred cCCcCHHHHHHHHHHcCCC-----HHHHHhcCCchHHHcCCC-ccCCCHHHHHHHHHhCcCc
Confidence 3457888888888887732 2233333 2222 2467888888888888764
No 325
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=25.79 E-value=1.7e+02 Score=20.49 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=32.2
Q ss_pred CCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhccC
Q psy164 102 DKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVD 139 (161)
Q Consensus 102 D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~ 139 (161)
-.|..|..+.+++...+..-+..++.+.+..+++.-++
T Consensus 53 ~lD~~Gwa~i~~l~~~~~k~~~~~~~~~l~~iV~~d~K 90 (211)
T COG1859 53 RLDEEGWADIDELLEGLRKAGRWLTRELLLAVVATDDK 90 (211)
T ss_pred eeccccchhHHHHHHHHHhhccCCCHHHHHHHHhcCCC
Confidence 35789999999999999998999999988888776543
No 326
>PF07261 DnaB_2: Replication initiation and membrane attachment; InterPro: IPR006343 This entry represents a domain found in several bacterial replication initiation and membrane attachment proteins, DnaB and DnaD. The DnaD protein is a component of the PriA primosome. The PriA primosome functions to recruit the replication fork helicase onto the DNA []. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria []. The DnaB protein is essential for both replication initiation and membrane attachment of the origin region of the chromosome and Plasmid pUB110 in Bacillus subtilis. It is known that there are two different classes (DnaBI and DnaBII) in the DnaB mutants; DnaBI is essential for both chromosome and pUB110 replication, whereas DnaBII is necessary only for chromosome replication []. This domain tends to be found towards the C terminus of DnaB and DnaD proteins and is alpha helical in nature.; PDB: 2I5U_A 2ZC2_A.
Probab=25.54 E-value=75 Score=17.50 Aligned_cols=42 Identities=21% Similarity=0.234 Sum_probs=25.3
Q ss_pred HHhhCCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHhhccC
Q psy164 98 FRTLDKDNKSYLDKEYLTKLMIEEG-EPFTPEEIDEMMSTAVD 139 (161)
Q Consensus 98 f~~~D~~~~g~I~~~el~~~l~~~g-~~~~~~~~~~~~~~~d~ 139 (161)
|..+.....|.+++.+...+-.-+. ..++++-+..+++.+-.
T Consensus 2 ~~~~e~~~~~~~s~~e~~~l~~~~~~~~~~~~~v~~ai~~~~~ 44 (77)
T PF07261_consen 2 FEFYEKNFGRPPSPSEIEKLEKWIDDYGFSPEVVNEAIEYALE 44 (77)
T ss_dssp HHHHHCCCTSS--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4455555567888877766665544 25777777777777653
No 327
>TIGR02878 spore_ypjB sporulation protein YpjB. Members of this protein, YpjB, family are restricted to a subset of endospore-forming bacteria, including Bacillus species but not CLostridium or some others. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon, where sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect. This protein family is not, however, a part of the endospore formation minimal gene set.
Probab=25.53 E-value=2.3e+02 Score=20.18 Aligned_cols=54 Identities=9% Similarity=0.197 Sum_probs=41.8
Q ss_pred ccCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCC
Q psy164 6 EVHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPE 64 (161)
Q Consensus 6 ~~~l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~ 64 (161)
...+++++++.+...+..++......++..+....|..+ +.+++.+|.....++
T Consensus 142 ~Idl~~~~~q~v~~~i~~l~~~r~~~~~~~~~~~~L~~~-----~~dl~~lF~~vkkD~ 195 (233)
T TIGR02878 142 TIDVPEDQVQRVDSHLSYLENFRFQQRSEDEKEEQLSLM-----RGDLKALFDGVKEDE 195 (233)
T ss_pred eeecCHHHHHHHHHHHHHHHhhhhhccChHHHHHHHHHH-----HHHHHHHHcccccCC
Confidence 457889999999998888887767778888888777644 677888888776554
No 328
>PF03874 RNA_pol_Rpb4: RNA polymerase Rpb4; InterPro: IPR005574 The eukaryotic RNA polymerase subunits RPB4 and RPB7 form a heterodimer that reversibly associates with the RNA polymerase II core. Archaeal cells contain a single RNAP made up of about 12 subunits, displaying considerable homology to the eukaryotic RNAPII subunits. The RPB4 and RPB7 homologs are called subunits F and E, respectively, and have been shown to form a stable heterodimer. While the RPB7 homologue is reasonably well conserved, the similarity between the eukaryotic RPB4 and the archaeal F subunit is barely detectable [].; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3AYH_A 3H3V_E 4A3C_D 3PO3_D 3HOX_D 2R92_D 3HOU_D 1Y77_D 2R7Z_D 3QT1_D ....
Probab=25.36 E-value=83 Score=19.22 Aligned_cols=11 Identities=18% Similarity=0.184 Sum_probs=4.8
Q ss_pred HHHHHHHHHHh
Q psy164 50 EADIQEIIVTC 60 (161)
Q Consensus 50 ~~~~~~l~~~~ 60 (161)
.+.+..+...+
T Consensus 56 ~e~~~~l~~~L 66 (117)
T PF03874_consen 56 PESIKELREEL 66 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 329
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=25.21 E-value=78 Score=14.49 Aligned_cols=12 Identities=25% Similarity=0.296 Sum_probs=7.1
Q ss_pred ccHHHHHHHHHH
Q psy164 109 LDKEYLTKLMIE 120 (161)
Q Consensus 109 I~~~el~~~l~~ 120 (161)
||.+|++.+|..
T Consensus 17 ls~eeir~FL~~ 28 (30)
T PF08671_consen 17 LSKEEIREFLEF 28 (30)
T ss_dssp --HHHHHHHHHH
T ss_pred CCHHHHHHHHHh
Confidence 777777777754
No 330
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=25.10 E-value=54 Score=15.59 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=10.9
Q ss_pred cccHHHHHHHHHHcCCCC
Q psy164 108 YLDKEYLTKLMIEEGEPF 125 (161)
Q Consensus 108 ~I~~~el~~~l~~~g~~~ 125 (161)
++++.+++.+|...|...
T Consensus 3 sltV~~Lk~iL~~~~I~~ 20 (35)
T PF12949_consen 3 SLTVAQLKRILDEHGIEF 20 (35)
T ss_dssp T--SHHHHHHHHHHT---
T ss_pred cCcHHHHHHHHHHcCCCC
Confidence 467788999998887543
No 331
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=25.02 E-value=1.9e+02 Score=18.31 Aligned_cols=52 Identities=10% Similarity=0.086 Sum_probs=27.2
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHH---HHHHhhccCCCCCceeHHHHHHHHhccccC
Q psy164 107 SYLDKEYLTKLMIEEGEPFTPEEI---DEMMSTAVDQDTGRIPYEYYINHIMKSEER 160 (161)
Q Consensus 107 g~I~~~el~~~l~~~g~~~~~~~~---~~~~~~~d~~~~g~i~~~eF~~~l~~~~~~ 160 (161)
..++.+++..++...|..+ ..-+ ...++..+.+ ...++-++.+..|..+|..
T Consensus 35 ~~~s~~eL~~~l~~~~~~~-~~lin~~~~~~k~L~~~-~~~ls~~e~i~ll~~~P~L 89 (132)
T PRK13344 35 EPLTKEEILAILTKTENGI-ESIVSSKNRYAKALDCD-IEELSVNEVIDLIQENPRI 89 (132)
T ss_pred CCCCHHHHHHHHHHhCCCH-HHhhccCcHHHHhCCcc-hhcCCHHHHHHHHHhCccc
Confidence 4577777777777765221 0011 1122223222 1356667777777777653
No 332
>PRK15121 right oriC-binding transcriptional activator; Provisional
Probab=24.92 E-value=2.7e+02 Score=20.07 Aligned_cols=56 Identities=9% Similarity=0.064 Sum_probs=37.1
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHh
Q psy164 15 KKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGM 80 (161)
Q Consensus 15 ~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 80 (161)
+.+.++......+-...++.+++...+. ++...+.++|...- .+++.+|+...+..
T Consensus 5 ~~i~~~~~~i~~~~~~~~~l~~lA~~~~-----~S~~~l~r~F~~~~-----g~s~~~yi~~~Rl~ 60 (289)
T PRK15121 5 GIIRDLLIWLEGHLDQPLSLDNVAAKAG-----YSKWHLQRMFKDVT-----GHAIGAYIRARRLS 60 (289)
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHC-----cCHHHHHHHHHHHH-----CcCHHHHHHHHHHH
Confidence 3445555555555556688888887643 66778888887762 37788888776654
No 333
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=24.90 E-value=1.9e+02 Score=18.39 Aligned_cols=48 Identities=23% Similarity=0.243 Sum_probs=30.2
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhccCCC
Q psy164 92 EELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQD 141 (161)
Q Consensus 92 ~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~ 141 (161)
+.+..+-+.+...+-..-+.+.=..+|+.=| ++++|+++++.......
T Consensus 4 ~li~~A~~FL~~p~V~~sp~~~k~~FL~sKG--Lt~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 4 DLIEQAVKFLQDPKVRNSPLEKKIAFLESKG--LTEEEIDEALGRAGSPP 51 (136)
T ss_dssp HHHHHHHHHHCTTTCCCS-HHHHHHHHHHCT----HHHHHHHHHHHT--S
T ss_pred HHHHHHHHHhCCcccccCCHHHHHHHHHcCC--CCHHHHHHHHHhcCCcc
Confidence 4555666666555555566677777888777 89999999988876543
No 334
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=24.78 E-value=1e+02 Score=18.94 Aligned_cols=50 Identities=8% Similarity=-0.071 Sum_probs=25.8
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHH---HHHHhhccCCCCCceeHHHHHHHHhccccC
Q psy164 107 SYLDKEYLTKLMIEEGEPFTPEEI---DEMMSTAVDQDTGRIPYEYYINHIMKSEER 160 (161)
Q Consensus 107 g~I~~~el~~~l~~~g~~~~~~~~---~~~~~~~d~~~~g~i~~~eF~~~l~~~~~~ 160 (161)
..+|.++++.++..+|. ..-+ ...++..+.+ ...++-++.+..|..+|..
T Consensus 35 ~p~s~~eL~~~l~~~g~---~~l~n~~~~~~r~~~~~-~~~ls~~e~~~ll~~~P~L 87 (113)
T cd03033 35 EPWTAETLRPFFGDLPV---AEWFNPAAPRVKSGEVV-PEALDEEEALALMIADPLL 87 (113)
T ss_pred CCCCHHHHHHHHHHcCH---HHHHhcccHHHHhcCCC-ccCCCHHHHHHHHHhCcce
Confidence 34677777777776651 1111 1122222211 1345777777777777653
No 335
>KOG4286|consensus
Probab=24.59 E-value=3e+02 Score=23.50 Aligned_cols=100 Identities=11% Similarity=0.144 Sum_probs=64.4
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhh-------cCCC-CC
Q psy164 17 IADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMIS-------ENRF-QP 88 (161)
Q Consensus 17 l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~-------~~~~-~~ 88 (161)
+.=.++.||...+|.|..-+|+-.+-.+.-.+.++..+.+|..+...+.- ++-..|-.++..... ...| ..
T Consensus 472 lN~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~sq-~~q~~l~lLL~dliqipr~lGE~aAfGgs 550 (966)
T KOG4286|consen 472 LNWLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASSTSQ-CDQRRLGLLLHDLIQIPRQLGEVAAFGGS 550 (966)
T ss_pred HHHHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCchhh-HHHHHHHHHHHHHHHHHHHHhHHHhhcCC
Confidence 34567889999999999999998888776666677788899888755433 323334333333211 1111 12
Q ss_pred CcHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q psy164 89 ASAEELLKAFRTLDKDNKSYLDKEYLTKLMI 119 (161)
Q Consensus 89 ~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~ 119 (161)
+....++..|+.- ++.-.|+...|-.++.
T Consensus 551 NvepsvrsCF~~v--~~~pei~~~~f~dw~~ 579 (966)
T KOG4286|consen 551 NIEPSVRSCFQFV--NNKPEIEAALFLDWMR 579 (966)
T ss_pred CCChHHHHHHHhc--CCCCcchHHHHHHHhc
Confidence 4456788888833 4556677777766654
No 336
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=24.33 E-value=1.8e+02 Score=17.78 Aligned_cols=55 Identities=13% Similarity=0.079 Sum_probs=31.1
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHH---HHHhhccCCCCCceeHHHHHHHHhccccCC
Q psy164 106 KSYLDKEYLTKLMIEEGEPFTPEEID---EMMSTAVDQDTGRIPYEYYINHIMKSEERL 161 (161)
Q Consensus 106 ~g~I~~~el~~~l~~~g~~~~~~~~~---~~~~~~d~~~~g~i~~~eF~~~l~~~~~~l 161 (161)
.-.+|.+++..++..+|.....+-++ ..++..+.+ ...++-++.++.|..+|..|
T Consensus 33 ~~p~t~~el~~~l~~~g~~~~~~lin~~~~~~~~l~~~-~~~ls~~e~i~~l~~~P~Li 90 (114)
T TIGR00014 33 KNPPTKSELEAIFAKLGLTVAREMIRTKEALYKELGLS-DPNLSDQELLDAMVAHPILL 90 (114)
T ss_pred CCCcCHHHHHHHHHHcCCchHHHHHhcCCcHHHHcCCC-ccCCCHHHHHHHHHHCcCcc
Confidence 34578888888888877321011111 112222222 23567788888888887643
No 337
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=24.30 E-value=2.3e+02 Score=19.75 Aligned_cols=34 Identities=18% Similarity=0.105 Sum_probs=24.3
Q ss_pred CcHHHHHHHHHhhCCCCCCcc-cHHHHHHHHHHcC
Q psy164 89 ASAEELLKAFRTLDKDNKSYL-DKEYLTKLMIEEG 122 (161)
Q Consensus 89 ~~~~~~~~~f~~~D~~~~g~I-~~~el~~~l~~~g 122 (161)
....+++.-|+.+=-+.+..| +..-|..+|+.+-
T Consensus 81 ~~~~~~~~YyKkhIy~~d~~v~d~~~lv~~ck~Fl 115 (205)
T PF12238_consen 81 EGREKMTKYYKKHIYKEDSEVKDYNGLVKFCKDFL 115 (205)
T ss_pred ccHHHHHHHHHHhccCcccccccHHHHHHHHHHHh
Confidence 445677778876655566677 8888888888753
No 338
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=24.19 E-value=2e+02 Score=18.68 Aligned_cols=35 Identities=17% Similarity=0.174 Sum_probs=29.0
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhccC
Q psy164 105 NKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVD 139 (161)
Q Consensus 105 ~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~ 139 (161)
.....|.+|+...|...|..+|..-+...++..+.
T Consensus 13 ~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~elgl 47 (146)
T TIGR01529 13 EEKISTQEELVALLKAEGIEVTQATVSRDLRELGA 47 (146)
T ss_pred cCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcCC
Confidence 45678899999999999999999888888887653
No 339
>PRK10356 hypothetical protein; Provisional
Probab=24.19 E-value=2.7e+02 Score=20.36 Aligned_cols=45 Identities=11% Similarity=0.035 Sum_probs=33.6
Q ss_pred ccCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCH
Q psy164 6 EVHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTE 50 (161)
Q Consensus 6 ~~~l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~ 50 (161)
...+++++...+..++..+....++.....++..+|.+..+-|+.
T Consensus 108 ~~~ls~~e~~~L~~la~~Ykv~~~~~~~~~~~~~LL~RVDiIP~s 152 (274)
T PRK10356 108 QGQWSPAERARLKDIAKRYKVKWSGNTRKIPWNTLLERVDIIPTS 152 (274)
T ss_pred ccCCCHHHHHHHHHHHHHcCCCcCCCcchhhHHHHHHHhCcCCHH
Confidence 456889999999999999987755555566677778877765543
No 340
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=24.13 E-value=1.8e+02 Score=17.68 Aligned_cols=39 Identities=13% Similarity=0.096 Sum_probs=29.3
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhc
Q psy164 97 AFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTA 137 (161)
Q Consensus 97 ~f~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 137 (161)
+.-++| ..-.||.+++..+++..|..+....+..+++.+
T Consensus 8 aLiL~d--~~~~~Tae~I~~ilkAaGveve~~~~~~f~~~L 46 (103)
T cd05831 8 ALILHD--DGIEITADNINALLKAAGVNVEPYWPGLFAKAL 46 (103)
T ss_pred HHHHcc--CCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 334443 345799999999999999888887777766665
No 341
>PF09550 DUF2376: Conserved hypothetical phage protein (DUF2376); InterPro: IPR019056 Gene transfer agents belong to a group of unusual genetic exchange elements []. GTAs are unusual in the sense they have the structure of a small tailed phage, which do not possess typical phage traits such as host cell lysis and infectious transmission of the GTA genes. In the Rhodobacter capsulatus GTA the GTA particles contain random 4.5 kb DNA fragments of the R.capsulatus genome. These DNA fragments can be transmitted to other cells where allelic conversion may occur via homologous recombination. The genes coding for the GTA particles are of two distinct types: the first is a cluster of genes reminiscent of a cryptyic prophage, where a number of the genes have similarity to known phage structural genes; the second type consists of two genes coding for a cellular two-component signal transduction system, which regulates the transcription of the GTA structural gene cluster in a growth phase dependent manner []. This entry is represented by ORFg10.1 (RCAP_rcc01693) of the Gene Transfer Agent (GTA) of Rhodobacter capsulatus [see Fig.1, in ]. The function is not known.
Probab=23.80 E-value=1.1e+02 Score=15.30 Aligned_cols=16 Identities=0% Similarity=-0.176 Sum_probs=7.6
Q ss_pred CceeHHHHHHHHhccc
Q psy164 143 GRIPYEYYINHIMKSE 158 (161)
Q Consensus 143 g~i~~~eF~~~l~~~~ 158 (161)
..++..+.-..|...|
T Consensus 27 ~pl~R~~L~~Lm~~~P 42 (43)
T PF09550_consen 27 APLDRAELDALMRRFP 42 (43)
T ss_pred CCCCHHHHHHHHHHCc
Confidence 4455555555444433
No 342
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=23.65 E-value=1.9e+02 Score=17.84 Aligned_cols=31 Identities=6% Similarity=0.169 Sum_probs=28.0
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHhhcc
Q psy164 108 YLDKEYLTKLMIEEGEPFTPEEIDEMMSTAV 138 (161)
Q Consensus 108 ~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d 138 (161)
.|+.+.++.++...|..+.+.-+..++....
T Consensus 16 ei~e~~l~~vl~aaGveve~~r~k~lvaaLe 46 (109)
T COG2058 16 EITEDNLKSVLEAAGVEVEEARAKALVAALE 46 (109)
T ss_pred cCCHHHHHHHHHHcCCCccHHHHHHHHHHhc
Confidence 8999999999999999999988888888764
No 343
>COG5562 Phage envelope protein [General function prediction only]
Probab=23.24 E-value=63 Score=20.73 Aligned_cols=18 Identities=11% Similarity=0.283 Sum_probs=15.1
Q ss_pred CCCCCccchhhHHHHHHH
Q psy164 62 NPEFGNIALSRFLPIVSG 79 (161)
Q Consensus 62 ~~~~~~i~~~ef~~~~~~ 79 (161)
.+..|..+|++|+..+..
T Consensus 83 ~~qsGqttF~ef~~~la~ 100 (137)
T COG5562 83 RHQSGQTTFEEFCSALAE 100 (137)
T ss_pred HHhcCCccHHHHHHHHHh
Confidence 356899999999998875
No 344
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.20 E-value=2.1e+02 Score=18.21 Aligned_cols=48 Identities=6% Similarity=0.091 Sum_probs=33.4
Q ss_pred ccCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy164 6 EVHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVT 59 (161)
Q Consensus 6 ~~~l~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~ 59 (161)
...+|+++.++++...-.+-+ .+|.++..++.... | .+...+..++..
T Consensus 2 a~~~T~eer~eLk~rIvElVR-e~GRiTi~ql~~~T---G--asR~Tvk~~lre 49 (127)
T PF06163_consen 2 ARVFTPEEREELKARIVELVR-EHGRITIKQLVAKT---G--ASRNTVKRYLRE 49 (127)
T ss_pred CCcCCHHHHHHHHHHHHHHHH-HcCCccHHHHHHHH---C--CCHHHHHHHHHH
Confidence 356899999999887776755 47999999988764 3 344455555443
No 345
>KOG0871|consensus
Probab=23.05 E-value=2.3e+02 Score=18.59 Aligned_cols=28 Identities=21% Similarity=0.152 Sum_probs=21.7
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHHcCCC
Q psy164 97 AFRTLDKDNKSYLDKEYLTKLMIEEGEP 124 (161)
Q Consensus 97 ~f~~~D~~~~g~I~~~el~~~l~~~g~~ 124 (161)
+=++.+++...+|.++.+..+|..+|..
T Consensus 55 Aneic~~e~KKTIa~EHV~KALe~LgF~ 82 (156)
T KOG0871|consen 55 ANEICNKEAKKTIAPEHVIKALENLGFG 82 (156)
T ss_pred HHHHHhHHhcccCCHHHHHHHHHHcchH
Confidence 3345566778899999999999998854
No 346
>PF12812 PDZ_1: PDZ-like domain
Probab=23.05 E-value=97 Score=17.67 Aligned_cols=21 Identities=10% Similarity=0.148 Sum_probs=14.6
Q ss_pred CCCCceeHHHHHHHHhccccC
Q psy164 140 QDTGRIPYEYYINHIMKSEER 160 (161)
Q Consensus 140 ~~~g~i~~~eF~~~l~~~~~~ 160 (161)
|+.-.=+.++|++.+++.|++
T Consensus 58 n~kpt~~Ld~f~~vvk~ipd~ 78 (78)
T PF12812_consen 58 NGKPTPDLDDFIKVVKKIPDN 78 (78)
T ss_pred CCcCCcCHHHHHHHHHhCCCC
Confidence 444456788888888877764
No 347
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=22.94 E-value=1.7e+02 Score=17.10 Aligned_cols=32 Identities=6% Similarity=0.086 Sum_probs=24.0
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHcCCC
Q psy164 93 ELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEP 124 (161)
Q Consensus 93 ~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~ 124 (161)
-++.+-......+.-+|+.+|+..+++..|.+
T Consensus 50 I~~dav~ya~Ha~RKTVt~~DV~~alkr~g~~ 81 (85)
T cd00076 50 VIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 81 (85)
T ss_pred HHHHHHHHHHhcCCCcCcHHHHHHHHHHCCCC
Confidence 44555555556677889999999999998854
No 348
>PF08812 YtxC: YtxC-like family; InterPro: IPR014199 This uncharacterised protein is one of a number of proteins conserved in all known endospore-forming Firmicutes (low-GC Gram-positive bacteria), including Carboxydothermus hydrogenoformans, and it is not found in non-endospore forming species. It is uniformly distributed in the mother cell cytoplasm in Bacillus subtilis [].
Probab=22.84 E-value=45 Score=23.32 Aligned_cols=68 Identities=13% Similarity=0.168 Sum_probs=39.9
Q ss_pred chhhHHHHHHHhhhcCCCCCCcHHH---HHHHHHhhCCCCCCcccHHHHHHHHHH-cCCCCCHHH--HHHHHhhc
Q psy164 69 ALSRFLPIVSGMISENRFQPASAEE---LLKAFRTLDKDNKSYLDKEYLTKLMIE-EGEPFTPEE--IDEMMSTA 137 (161)
Q Consensus 69 ~~~ef~~~~~~~~~~~~~~~~~~~~---~~~~f~~~D~~~~g~I~~~el~~~l~~-~g~~~~~~~--~~~~~~~~ 137 (161)
.|.+|+.+++.....+.-......- -...|..+|.+ ...|+.+++..++.. ...+++.++ +..++..+
T Consensus 117 EY~eFI~lLryFV~~Qe~ki~~vhvv~~~~g~f~l~D~~-~~~i~~~~~~~~~~~~~~~~i~~eD~lIS~LItia 190 (221)
T PF08812_consen 117 EYQEFIQLLRYFVDIQEPKIELVHVVIDEDGSFILYDEE-GKPISNEELEEYIDELFDQEINYEDLLISPLITIA 190 (221)
T ss_pred HHHHHHHHHHHHHHhcCcCceEEEEEEeCCCcEEEEcCC-CCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHHHhC
Confidence 3788888888776543210011011 11367888855 467999999888887 344455444 45666554
No 349
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=22.83 E-value=1.9e+02 Score=17.45 Aligned_cols=65 Identities=14% Similarity=0.251 Sum_probs=42.5
Q ss_pred cchhhHHHHHHHhhhcCCCCCCcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHhhc
Q psy164 68 IALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEE-GEPFTPEEIDEMMSTA 137 (161)
Q Consensus 68 i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~-g~~~~~~~~~~~~~~~ 137 (161)
|.-.+|..++..+... -..+++..+-..+-..+...++..++...+... +...+++++...-...
T Consensus 20 vP~~Dy~PLlALL~r~-----Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~~vt~~~P~~~di~RV~~~L 85 (96)
T PF11829_consen 20 VPPTDYVPLLALLRRR-----LTDDEVAEVAAELAARGDPPVDRIDIGVAITRVTDELPTPEDIERVRARL 85 (96)
T ss_dssp B-HHHHHHHHHHHTTT-----S-HHHHHHHHHHHHHHTSS-BSCCHHHHHHHHHCSS-S-HHHHHHHHHHH
T ss_pred CCCCccHHHHHHhccc-----CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCcCHHHHHHHHHHH
Confidence 6677777777766544 666777777777755566666888888888774 6677888887765543
No 350
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=22.71 E-value=1.9e+02 Score=17.57 Aligned_cols=52 Identities=13% Similarity=0.075 Sum_probs=27.6
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHH---HHHHhhccCCCCCceeHHHHHHHHhccccC
Q psy164 107 SYLDKEYLTKLMIEEGEPFTPEEI---DEMMSTAVDQDTGRIPYEYYINHIMKSEER 160 (161)
Q Consensus 107 g~I~~~el~~~l~~~g~~~~~~~~---~~~~~~~d~~~~g~i~~~eF~~~l~~~~~~ 160 (161)
...+.+++..++...|..+ ..-+ ...++..+.+. ..++-++.++.|..+|..
T Consensus 35 ~~~~~~el~~~~~~~~~~~-~~l~n~~~~~~k~l~~~~-~~ls~~e~i~~l~~~p~L 89 (115)
T cd03032 35 QPLTKEELKEILSLTENGV-EDIISTRSKAFKNLNIDI-DELSLSELIRLISEHPSL 89 (115)
T ss_pred CcchHHHHHHHHHHhcCCH-HHHHhcCcHHHHHcCCCc-ccCCHHHHHHHHHhChhh
Confidence 4566777777777765321 0011 11222222222 356778888888777653
No 351
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=22.44 E-value=1.5e+02 Score=16.09 Aligned_cols=16 Identities=31% Similarity=0.592 Sum_probs=7.9
Q ss_pred CCCCCHHHHHHHHhhc
Q psy164 122 GEPFTPEEIDEMMSTA 137 (161)
Q Consensus 122 g~~~~~~~~~~~~~~~ 137 (161)
|..++.+++..++..+
T Consensus 16 G~~i~~~ei~~~L~~l 31 (71)
T smart00874 16 GLDLSAEEIEEILKRL 31 (71)
T ss_pred CCCCCHHHHHHHHHHC
Confidence 4445555555554444
No 352
>PF06207 DUF1002: Protein of unknown function (DUF1002); InterPro: IPR009343 This protein family has no known function. Its members are about 300 amino acids in length. It has so far been detected in Firmicute bacteria and some archaebacteria.
Probab=22.43 E-value=1.8e+02 Score=20.59 Aligned_cols=46 Identities=13% Similarity=0.122 Sum_probs=28.3
Q ss_pred cHHHHHHHHH----HhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHH
Q psy164 33 DCREVGTVLR----ALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVS 78 (161)
Q Consensus 33 ~~~el~~~l~----~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~ 78 (161)
+.+++..++. ..++.+++.+++.+...+..-.+-.+++.+|...+.
T Consensus 173 t~~eI~~IV~~~~~~~~i~ls~~q~~~i~~l~~~~~~~~~~~~~~k~ql~ 222 (225)
T PF06207_consen 173 TDEEIRNIVNNVLNNYNINLSDEQIQQIVNLMKKIQNLNIDWKQVKEQLN 222 (225)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5566555543 457777777777766665544445566666666554
No 353
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=22.30 E-value=1.9e+02 Score=17.27 Aligned_cols=47 Identities=11% Similarity=0.112 Sum_probs=33.9
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHH
Q psy164 28 GNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSG 79 (161)
Q Consensus 28 ~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 79 (161)
++|.|+..+...+-. .+.+.+.+..++..... .|.--|..|+.++..
T Consensus 32 ~~gIlT~~~~e~I~a---~~T~~~k~~~LLdiLp~--RG~~AF~~F~~aL~e 78 (94)
T cd08327 32 QEGILTESHVEEIES---QTTSRRKTMKLLDILPS--RGPKAFHAFLDSLEE 78 (94)
T ss_pred hCCCCCHHHHHHHHc---cCChHHHHHHHHHHHHh--hChhHHHHHHHHHHH
Confidence 467888888877643 34456778888888754 456679999998875
No 354
>PRK10945 gene expression modulator; Provisional
Probab=22.28 E-value=1.6e+02 Score=16.60 Aligned_cols=12 Identities=17% Similarity=0.146 Sum_probs=5.2
Q ss_pred cccHHHHHHHHH
Q psy164 108 YLDKEYLTKLMI 119 (161)
Q Consensus 108 ~I~~~el~~~l~ 119 (161)
.++..|+..+..
T Consensus 34 ~L~~~E~~~f~~ 45 (72)
T PRK10945 34 ELSDDELAVFYS 45 (72)
T ss_pred cCCHHHHHHHHH
Confidence 344444444443
No 355
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=21.97 E-value=1.8e+02 Score=17.03 Aligned_cols=48 Identities=17% Similarity=0.382 Sum_probs=31.6
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhccCCCCCceeHHHHHHHHhcc
Q psy164 105 NKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIMKS 157 (161)
Q Consensus 105 ~~g~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 157 (161)
++|+|+.++...+. ..+.+.+.+.+++... ...|..-.+-|..++..-
T Consensus 26 ~n~~it~E~y~~V~---a~~T~qdkmRkLld~v--~akG~~~k~~F~~iL~e~ 73 (85)
T cd08324 26 KNDYFSTEDAEIVC---ACPTQPDKVRKILDLV--QSKGEEVSEYFLYLLQQL 73 (85)
T ss_pred ccCCccHHHHHHHH---hCCCCHHHHHHHHHHH--HhcCchHHHHHHHHHHHH
Confidence 57888888877665 3346677777777663 445555666777766653
No 356
>COG1059 Thermostable 8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]
Probab=21.80 E-value=1.9e+02 Score=19.93 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=17.7
Q ss_pred CCCCcccHHHHHHHHHHcCCCC
Q psy164 104 DNKSYLDKEYLTKLMIEEGEPF 125 (161)
Q Consensus 104 ~~~g~I~~~el~~~l~~~g~~~ 125 (161)
++-.+.+.+|++..|+.+|+..
T Consensus 66 ~gfly~~~eEL~e~Lk~~g~Rf 87 (210)
T COG1059 66 DGFLYLSEEELREKLKEVGYRF 87 (210)
T ss_pred cccccCCHHHHHHHHHHhcchh
Confidence 5666779999999999988654
No 357
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=21.76 E-value=1.3e+02 Score=15.20 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=14.3
Q ss_pred cccHHHHHHHHHHhCCCC
Q psy164 31 TIDCREVGTVLRALGGCP 48 (161)
Q Consensus 31 ~i~~~el~~~l~~l~~~~ 48 (161)
.++-.|+..-|.+.|+++
T Consensus 5 ~LSd~eL~~~L~~~G~~~ 22 (44)
T smart00540 5 RLSDAELRAELKQYGLPP 22 (44)
T ss_pred HcCHHHHHHHHHHcCCCC
Confidence 467788999999988754
No 358
>KOG1070|consensus
Probab=21.71 E-value=5.9e+02 Score=23.83 Aligned_cols=48 Identities=17% Similarity=0.075 Sum_probs=21.2
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHhhcc
Q psy164 91 AEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGE-PFTPEEIDEMMSTAV 138 (161)
Q Consensus 91 ~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~-~~~~~~~~~~~~~~d 138 (161)
.+.++..|...-+..+-+.-...|..++...+. ....+-++.|++.+.
T Consensus 1513 eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~ 1561 (1710)
T KOG1070|consen 1513 EESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG 1561 (1710)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc
Confidence 344555554443333333333334444443322 223344566666665
No 359
>TIGR01446 DnaD_dom DnaD and phage-associated domain. This model represents the conserved domain of DnaD, part of Bacillus subtilis replication restart primosome, and of a number of phage-associated proteins. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria.
Probab=21.68 E-value=1.1e+02 Score=16.66 Aligned_cols=29 Identities=31% Similarity=0.292 Sum_probs=16.5
Q ss_pred cccHHHH---HHHHHHcCCCCCHHHHHHHHhhcc
Q psy164 108 YLDKEYL---TKLMIEEGEPFTPEEIDEMMSTAV 138 (161)
Q Consensus 108 ~I~~~el---~~~l~~~g~~~~~~~~~~~~~~~d 138 (161)
.+++.++ ..++...| ++++.+..+++.+-
T Consensus 12 ~ls~~e~~~i~~~~~~~~--~~~evI~~ai~~a~ 43 (73)
T TIGR01446 12 MLSPFEMEDLKYWLDEFG--NSPELIKEALKEAV 43 (73)
T ss_pred CCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 5555544 34444555 56667777777653
No 360
>PLN00035 histone H4; Provisional
Probab=21.46 E-value=2.1e+02 Score=17.50 Aligned_cols=32 Identities=6% Similarity=0.080 Sum_probs=24.4
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHcCCC
Q psy164 93 ELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEP 124 (161)
Q Consensus 93 ~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~ 124 (161)
-++.+.......+.-+|+.+|+..+++..|.+
T Consensus 66 I~~dav~ya~HA~RKTV~~~DV~~Alkr~g~~ 97 (103)
T PLN00035 66 VIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97 (103)
T ss_pred HHHHHHHHHHhcCCCcCcHHHHHHHHHHcCCc
Confidence 45555555566678889999999999988754
No 361
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3.2.2.20 from EC) which acts as a base excision repair enzyme by severing the glycosylic bond of numerous damaged bases. The enzyme is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair; PDB: 2OFI_A 2OFK_A 2JG6_A 4AIA_E 4AI5_C 4AI4_A 1LMZ_A 1P7M_A 1NKU_A.
Probab=21.20 E-value=51 Score=22.30 Aligned_cols=44 Identities=18% Similarity=0.322 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHH
Q psy164 14 EKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEII 57 (161)
Q Consensus 14 ~~~l~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~ 57 (161)
...++++|..||.+.--.++.+++..++..-++--+...++.++
T Consensus 48 r~~~r~aF~~Fd~~~vA~~~e~~ie~l~~d~~iIRnr~KI~Avi 91 (179)
T PF03352_consen 48 REAFREAFAGFDPEKVAKMDEEDIERLMQDPGIIRNRRKIRAVI 91 (179)
T ss_dssp HHHHHHHTGGGHHHHHHT--HHHHHHHTTSTTSS--HHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHcCCHHHHHHHhcCcchhhhHHHHHHHH
Confidence 45788999999988777888999999887766655665555444
No 362
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=21.10 E-value=2.5e+02 Score=22.25 Aligned_cols=53 Identities=13% Similarity=0.214 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHHhhC--------CCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q psy164 8 HITNDFEKKIADAFDIFD--------HAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTC 60 (161)
Q Consensus 8 ~l~~~~~~~l~~~f~~~D--------~~~~g~i~~~el~~~l~~l~~~~~~~~~~~l~~~~ 60 (161)
.+++.|...+++-|..+. ......++.++++++.+-..+.+++++.+.+...+
T Consensus 357 ~~~e~~~~~~~~~~s~l~s~~m~~~~~~~k~~ItkEeVkKLAkLARLeLSEEElEkl~~dL 417 (477)
T PRK12821 357 ELSETQTKGIKKSFSDLQSPLFPKHWTSKKQQLNKDELKKLARLVMFDLDDAELEKLQVEF 417 (477)
T ss_pred HHHHHhhhhhhhhhhhhcChhhhhhhccccccCCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 455666666666665443 23345799999999888888899998888776554
No 363
>PTZ00015 histone H4; Provisional
Probab=20.93 E-value=2.1e+02 Score=17.41 Aligned_cols=32 Identities=3% Similarity=0.000 Sum_probs=24.1
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHcCCC
Q psy164 93 ELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEP 124 (161)
Q Consensus 93 ~~~~~f~~~D~~~~g~I~~~el~~~l~~~g~~ 124 (161)
-++.+.......+.-+|+.+|+..+++..|.+
T Consensus 67 I~rdav~~aeHA~RKTVt~~DV~~AlKr~g~~ 98 (102)
T PTZ00015 67 VVRDSTAYTEYARRKTVTAMDVVYALKRQGRT 98 (102)
T ss_pred HHHHHHHHHHhcCCCcccHHHHHHHHHhcCCC
Confidence 45555555556678889999999999988754
No 364
>PRK09389 (R)-citramalate synthase; Provisional
Probab=20.86 E-value=2.6e+02 Score=22.26 Aligned_cols=47 Identities=13% Similarity=0.263 Sum_probs=34.7
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCC--CCCCccchhhHHHHHHHhh
Q psy164 35 REVGTVLRALGGCPTEADIQEIIVTCEN--PEFGNIALSRFLPIVSGMI 81 (161)
Q Consensus 35 ~el~~~l~~l~~~~~~~~~~~l~~~~d~--~~~~~i~~~ef~~~~~~~~ 81 (161)
.-+...|+.+|+.++++++..++..+.. +....|+-.++..++....
T Consensus 321 ~~v~~~l~~~g~~~~~~~~~~~~~~vk~~~~~~~~~~~~el~~l~~~~~ 369 (488)
T PRK09389 321 AALKAALKEMGIEVSDDQLNEIVSRVKELGDRGKRVTDADLLAIAEDVL 369 (488)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHh
Confidence 5577888889999998888888776643 2345688888887776543
No 365
>KOG2419|consensus
Probab=20.78 E-value=1.8e+02 Score=24.30 Aligned_cols=80 Identities=14% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCccchhhHHHHHHHhhhcCCCCCCcHHH---------HHHHHHhhCCCC
Q psy164 35 REVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQPASAEE---------LLKAFRTLDKDN 105 (161)
Q Consensus 35 ~el~~~l~~l~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~---------~~~~f~~~D~~~ 105 (161)
..|......--...+..-..+++..+|.+.+++++|.+|......+-.. -...+ ....|..+|..+
T Consensus 421 ~~~~s~sie~~v~~~~c~~~~~~s~~d~~~~fk~sf~~~~~l~~~F~~v-----vaa~~~~~~D~~~~k~~~~~~lDl~g 495 (975)
T KOG2419|consen 421 SRFFSCSIEDPVETEECFAKRILSIVDYEEDFKLSFSEFSDLSFAFGNV-----VAANKLAWFDMLNEKEELFKALDLNG 495 (975)
T ss_pred hHHhhhhhhccccchhhhhhhcccccccccCceEeeehHHHHHHHHHHH-----HHhhhcchhhhcccchhheehhhccC
Q ss_pred C-----------------------CcccHHHHHHHHH
Q psy164 106 K-----------------------SYLDKEYLTKLMI 119 (161)
Q Consensus 106 ~-----------------------g~I~~~el~~~l~ 119 (161)
+ |.|+.+|+..++.
T Consensus 496 ~~~~~~~~~~lYs~vS~~~~~~s~~~vtVDe~v~ll~ 532 (975)
T KOG2419|consen 496 DPAHAPKQPVLYSYVSYPFLKKSFGVVTVDELVALLA 532 (975)
T ss_pred CcccCccccchhhhccccccccccCeeEHHHHHHHHH
No 366
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=20.75 E-value=1e+02 Score=20.07 Aligned_cols=23 Identities=9% Similarity=0.167 Sum_probs=18.1
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCc
Q psy164 9 ITNDFEKKIADAFDIFDHAGNKT 31 (161)
Q Consensus 9 l~~~~~~~l~~~f~~~D~~~~g~ 31 (161)
-|..++.+|..+|..++.+.+|.
T Consensus 44 eT~~qi~rLe~if~~lg~~~~~~ 66 (147)
T cd07909 44 ETEGQVERLEQIFESLGEKPEGK 66 (147)
T ss_pred HHHHHHHHHHHHHHHcCCCCccC
Confidence 46778889999999998876554
No 367
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=20.40 E-value=2.1e+02 Score=19.72 Aligned_cols=32 Identities=19% Similarity=0.351 Sum_probs=22.4
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHhhccCCCC
Q psy164 109 LDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDT 142 (161)
Q Consensus 109 I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~ 142 (161)
-.++|+..++...| +++++.+.+.+..-.+++
T Consensus 80 ~e~~el~~iy~~~G--l~~~~a~~i~~~l~~~~~ 111 (213)
T PF01988_consen 80 EEKEELVEIYRAKG--LSEEDAEEIAEELSKDKD 111 (213)
T ss_pred hHHHHHHHHHHHCC--CCHHHHHHHHHHHHhCch
Confidence 44557888888876 777777777777655444
No 368
>COG1508 RpoN DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog [Transcription]
Probab=20.38 E-value=4.4e+02 Score=20.87 Aligned_cols=50 Identities=14% Similarity=0.240 Sum_probs=30.2
Q ss_pred CCCCcccHHHHHHHHHHhCCCCCHHHHHHH---HHHhCCCCCCccchhhHHHHHH
Q psy164 27 AGNKTIDCREVGTVLRALGGCPTEADIQEI---IVTCENPEFGNIALSRFLPIVS 78 (161)
Q Consensus 27 ~~~g~i~~~el~~~l~~l~~~~~~~~~~~l---~~~~d~~~~~~i~~~ef~~~~~ 78 (161)
+.+|++..+ +..+...++. +..++++.+ ++.+++-|-|.-++.|.+.+-.
T Consensus 121 dd~GYl~~~-le~~~~~l~~-~~~~eve~vl~~iQ~ldP~GV~Ar~l~EcL~lQL 173 (444)
T COG1508 121 DDEGYLTES-LEEIAELLGS-VDEEEVEKVLARIQSLDPAGVGARDLRECLLLQL 173 (444)
T ss_pred CcCCCcccC-HHHHHHhccc-ccHHHHHHHHHHHhcCCCCccccCcHHHHHHHHH
Confidence 457888877 5555555553 555555554 5667776666666666554433
No 369
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=20.37 E-value=1.5e+02 Score=23.63 Aligned_cols=34 Identities=21% Similarity=0.188 Sum_probs=28.5
Q ss_pred CcHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcC
Q psy164 89 ASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEG 122 (161)
Q Consensus 89 ~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~g 122 (161)
....-+.-+|+..|..+--.|+..+|+.++.-++
T Consensus 125 tQ~gvL~i~F~~ADd~gLlLlDLkDLra~l~~v~ 158 (502)
T PF05872_consen 125 TQEGVLNIVFRIADDEGLLLLDLKDLRAMLQYVS 158 (502)
T ss_pred HHHHHHHHHHHHhccCCCccccHHHHHHHHHHHH
Confidence 4455678899999999888999999999997664
No 370
>smart00657 RPOL4c DNA-directed RNA-polymerase II subunit.
Probab=20.28 E-value=1.8e+02 Score=18.01 Aligned_cols=30 Identities=20% Similarity=0.182 Sum_probs=18.8
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHhhc
Q psy164 108 YLDKEYLTKLMIEEGEPFTPEEIDEMMSTA 137 (161)
Q Consensus 108 ~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 137 (161)
.-+..+++.++..+...+++++++.++...
T Consensus 82 P~s~~E~~~lI~sl~~r~~ee~l~~iL~~i 111 (118)
T smart00657 82 PETAEEAQLLIPSLEERIDEEELEELLDDL 111 (118)
T ss_pred CCCHHHHHHHhhhhhccCCHHHHHHHHHHH
Confidence 344556666666666667777777666543
No 371
>TIGR03685 L21P_arch 50S ribosomal protein L12P. This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome.
Probab=20.25 E-value=2.2e+02 Score=17.37 Aligned_cols=31 Identities=10% Similarity=0.239 Sum_probs=27.6
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHhhcc
Q psy164 108 YLDKEYLTKLMIEEGEPFTPEEIDEMMSTAV 138 (161)
Q Consensus 108 ~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d 138 (161)
.||.+.+..+|...|..+.+..+..+...+.
T Consensus 16 ~iT~e~I~~IL~AAGv~ve~~~~~~la~~L~ 46 (105)
T TIGR03685 16 EINEENLKAVLEAAGVEVDEARVKALVAALE 46 (105)
T ss_pred CCCHHHHHHHHHHhCCcccHHHHHHHHHHHc
Confidence 8999999999999999888888888887773
Done!