RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy164
(161 letters)
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 111 bits (279), Expect = 4e-32
Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 5/139 (3%)
Query: 19 DAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEII--VTCENPEFGNIALSRFLPI 76
+AF +FD G+ I +VG + RALG PT A+I +I+ + E I FLP+
Sbjct: 12 EAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNAAAITFEEFLPM 71
Query: 77 VSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMST 136
+ + + E+ ++ R DK+ + L ++ GE T EE++E+M
Sbjct: 72 LQAAANNK--DQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELMKG 129
Query: 137 AVDQDTGRIPYEYYINHIM 155
D + G I YE ++ HIM
Sbjct: 130 QEDSN-GCINYEAFVKHIM 147
Score = 35.6 bits (83), Expect = 0.002
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 14 EKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEII 57
+ + +FD GN T+ E+ VL LG TE +++E++
Sbjct: 84 FEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELM 127
Score = 30.6 bits (70), Expect = 0.13
Identities = 9/60 (15%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 92 EELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQD---TGRIPYE 148
++ +AF D+ + + + + G+ T EI++++ ++ I +E
Sbjct: 8 DDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGN-PSKEEMNAAAITFE 66
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 109 bits (274), Expect = 2e-31
Identities = 38/139 (27%), Positives = 72/139 (51%), Gaps = 5/139 (3%)
Query: 19 DAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGN--IALSRFLPI 76
+AF++FD G+ I + G V+RALG PT A++ +++ ++ E + + FLP+
Sbjct: 14 EAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSRRVDFETFLPM 73
Query: 77 VSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMST 136
+ + + E+ L+ FR DK+ + L ++ GE T EE++ +++
Sbjct: 74 LQAVAKNR--GQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLAG 131
Query: 137 AVDQDTGRIPYEYYINHIM 155
D + G I YE ++ HI+
Sbjct: 132 HEDSN-GCINYEAFLKHIL 149
Score = 38.3 bits (90), Expect = 2e-04
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 12 DFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEII 57
+ + F +FD GN + E+ VL LG TE +++ ++
Sbjct: 84 GTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVL 129
Score = 30.3 bits (69), Expect = 0.15
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 92 EELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQD---TGRIPYE 148
EE +AF D+ + +M G+ T E+ +++ D + R+ +E
Sbjct: 10 EEFKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGN-PKSDELKSRRVDFE 68
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 107 bits (269), Expect = 1e-30
Identities = 27/156 (17%), Positives = 58/156 (37%), Gaps = 10/156 (6%)
Query: 1 MSLSEEVHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTC 60
M ++ + + + + I R LG P+ D ++I
Sbjct: 1 MESVADIQQLEEKVDESDVRIYFNEKSSGGKISIDNASYNARKLGLAPSSIDEKKIKELY 60
Query: 61 ENPEFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIE 120
N+ ++L +S + + + EEL+K F D + YL K + ++
Sbjct: 61 G----DNLTYEQYLEYLSICVHD----KDNVEELIKMFAHFDNNCTGYLTKSQMKNILTT 112
Query: 121 EGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIMK 156
G+ T +E + ++ A + I Y+ + I++
Sbjct: 113 WGDALTDQEAIDALN-AFSSE-DNIDYKLFCEDILQ 146
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 105 bits (264), Expect = 5e-30
Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 7/139 (5%)
Query: 19 DAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVS 78
AF +FD G I +G +LRA G PT A+I EI T + + +FL +++
Sbjct: 9 QAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEITEIESTLP----AEVDMEQFLQVLN 64
Query: 79 GMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAV 138
+ P EE +K F+ DKD + L ++ GE + EE+DE++ V
Sbjct: 65 RPNGFD--MPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLK-GV 121
Query: 139 DQDTGRIPYEYYINHIMKS 157
G + Y ++ I+ +
Sbjct: 122 PVKDGMVNYHDFVQMILAN 140
Score = 36.7 bits (86), Expect = 9e-04
Identities = 10/46 (21%), Positives = 20/46 (43%)
Query: 12 DFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEII 57
++ F +FD I E+ VL +LG + ++ E++
Sbjct: 73 GDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELL 118
Score = 28.2 bits (64), Expect = 0.83
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 92 EELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMS 135
+AF D+ + K + L+ G+ T EI E+ S
Sbjct: 5 SPYKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEITEIES 48
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 105 bits (264), Expect = 6e-30
Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 4/141 (2%)
Query: 19 DAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPE-FGNIALSRFLPIV 77
D F +FD G I +G LRA+G PT +Q+II + ++ L + ++
Sbjct: 8 DIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQITGLI 67
Query: 78 SGMISE-NRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMST 136
E + A E+ +KAF+ DK++ + L ++ GE T E+DE++
Sbjct: 68 EVNEKELDATTKAKTEDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKG 127
Query: 137 A-VDQDTGRIPYEYYINHIMK 156
VD + G I Y+ +I +++
Sbjct: 128 VEVDSN-GEIDYKKFIEDVLR 147
Score = 36.0 bits (84), Expect = 0.002
Identities = 10/44 (22%), Positives = 21/44 (47%)
Query: 14 EKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEII 57
+ AF +FD + ++ +L LG T+A++ E++
Sbjct: 82 TEDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELL 125
Score = 34.9 bits (81), Expect = 0.004
Identities = 7/58 (12%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Query: 92 EELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQD-TGRIPYE 148
F DK + + K+ L + G T + + ++++ + +
Sbjct: 4 RANKDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLD 61
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 104 bits (263), Expect = 1e-29
Identities = 30/141 (21%), Positives = 62/141 (43%), Gaps = 9/141 (6%)
Query: 19 DAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVS 78
+AF + D + I ++ + +LG P + ++ ++ E P G + + FL +
Sbjct: 20 EAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAML--KECP--GQLNFTAFLTLFG 75
Query: 79 GMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAV 138
+S + L AF D+D + ++ ++YL L+ G+ F+ EEI + A
Sbjct: 76 EKVSG----TDPEDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWKDA- 130
Query: 139 DQDTGRIPYEYYINHIMKSEE 159
+ Y ++ K+E+
Sbjct: 131 PLKNKQFNYNKMVDIKGKAED 151
Score = 35.2 bits (82), Expect = 0.003
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 12 DFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEII 57
D E + +AF +FD G I + +L +G ++ +I+ +
Sbjct: 82 DPEDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVW 127
Score = 29.8 bits (68), Expect = 0.25
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 92 EELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMS 135
+EL +AF +D+D ++ E L + G +E++ M+
Sbjct: 16 QELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLK 59
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 103 bits (260), Expect = 2e-29
Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 6/139 (4%)
Query: 19 DAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVS 78
+AF++FD I + TVL+ G A E+ + G I FL ++
Sbjct: 10 EAFELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQFPEFLSMMG 69
Query: 79 GMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAV 138
+ + S + L +AFRT D + Y+ K L ++ G+ P E E +
Sbjct: 70 RRMKQ----TTSEDILRQAFRTFDPEGTGYIPKAALQDALLNLGDRLKPHEFAEFLGIT- 124
Query: 139 DQDTGRIPYEYYINHIMKS 157
+ + G+I Y+ +IN M +
Sbjct: 125 ETEKGQIRYDNFIN-TMFT 142
Score = 35.5 bits (83), Expect = 0.002
Identities = 11/46 (23%), Positives = 15/46 (32%)
Query: 12 DFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEII 57
E + AF FD G I + L LG + E +
Sbjct: 76 TSEDILRQAFRTFDPEGTGYIPKAALQDALLNLGDRLKPHEFAEFL 121
Score = 34.4 bits (80), Expect = 0.005
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 92 EELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQD-TGRIPYE 148
E +AF D + ++ KE L ++ + G P +EM + D G+I +
Sbjct: 6 SEFKEAFELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFN-EADATGNGKIQFP 62
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 103 bits (259), Expect = 5e-29
Identities = 31/141 (21%), Positives = 57/141 (40%), Gaps = 9/141 (6%)
Query: 19 DAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVS 78
+AF + D + + ++ + LG P + ++ ++ E P G + + FL I S
Sbjct: 22 EAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAML--KEAP--GPLNFTMFLSIFS 77
Query: 79 GMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAV 138
+S S E + AF D+ L+ EY+ L+ G+ F +E+
Sbjct: 78 DKLSGT----DSEETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTFK-EA 132
Query: 139 DQDTGRIPYEYYINHIMKSEE 159
+ G+ Y + I S E
Sbjct: 133 PVEGGKFDYVKFTAMIKGSGE 153
Score = 36.7 bits (86), Expect = 8e-04
Identities = 10/46 (21%), Positives = 22/46 (47%)
Query: 12 DFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEII 57
D E+ I +AF +FD K ++ + +L +G + +++
Sbjct: 84 DSEETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTF 129
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 102 bits (258), Expect = 6e-29
Identities = 32/142 (22%), Positives = 68/142 (47%), Gaps = 10/142 (7%)
Query: 19 DAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVS 78
+AF++ D + ID ++ +L ++G PT+ ++ ++ E P G I + FL +
Sbjct: 11 EAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMM--SEAP--GPINFTMFLTMFG 66
Query: 79 GMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTA- 137
++ + + AF D++ ++ +++L +L+ G+ FT EE+DEM A
Sbjct: 67 EKLNG----TDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYREAP 122
Query: 138 VDQDTGRIPYEYYINHIMKSEE 159
+D+ G Y + + +
Sbjct: 123 IDKK-GNFNYVEFTRILKHGAK 143
Score = 35.5 bits (83), Expect = 0.002
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 12 DFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEII 57
D E I +AF FD + I + +L +G T+ ++ E+
Sbjct: 73 DPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMY 118
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 108 bits (271), Expect = 1e-28
Identities = 51/157 (32%), Positives = 85/157 (54%), Gaps = 6/157 (3%)
Query: 1 MSLSEEVHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTC 60
+ + +T + + +AF +FD G+ TI +E+GTV+R+LG PTEA++Q++I
Sbjct: 298 LEYNTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEV 357
Query: 61 ENPEFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIE 120
+ G I FL +++ + + S EE+ +AFR DKD Y+ L +M
Sbjct: 358 DADGNGTIDFPEFLTMMARKMKD----TDSEEEIREAFRVFDKDGNGYISAAELRHVMTN 413
Query: 121 EGEPFTPEEIDEMMSTA-VDQDTGRIPYEYYINHIMK 156
GE T EE+DEM+ A +D D G++ YE ++ +
Sbjct: 414 LGEKLTDEEVDEMIREADIDGD-GQVNYEEFVQMMTA 449
Score = 58.0 bits (140), Expect = 9e-11
Identities = 28/130 (21%), Positives = 46/130 (35%), Gaps = 14/130 (10%)
Query: 20 AFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSG 79
IF EV L +++ I + E GNI +
Sbjct: 252 ERTIFFKDDGNYKTRAEVKFEGDTLV---NRIELKGI----DFKEDGNILGHKLEYNTRD 304
Query: 80 MISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVD 139
++E + E +AF DKD + + L +M G+ T E+ +M++ VD
Sbjct: 305 QLTEEQIA-----EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINE-VD 358
Query: 140 QD-TGRIPYE 148
D G I +
Sbjct: 359 ADGNGTIDFP 368
Score = 29.9 bits (67), Expect = 0.32
Identities = 9/52 (17%), Positives = 18/52 (34%)
Query: 80 MISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEID 131
M + F+ A E ++ KD+ +Y + + + ID
Sbjct: 235 MKQHDFFKSAMPEGYIQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGID 286
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 100 bits (251), Expect = 6e-28
Identities = 49/139 (35%), Positives = 79/139 (56%), Gaps = 6/139 (4%)
Query: 19 DAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVS 78
+AF +FD G+ TI +E+GTV+R+LG PTEA++Q++I + G I FL +++
Sbjct: 14 EAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMA 73
Query: 79 GMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTA- 137
+ E S EEL++AF+ D+D + L +M GE T +E+DEM+ A
Sbjct: 74 RKMKE----QDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREAD 129
Query: 138 VDQDTGRIPYEYYINHIMK 156
+D D G I YE ++ ++
Sbjct: 130 IDGD-GHINYEEFVRMMVS 147
Score = 36.7 bits (86), Expect = 8e-04
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 12 DFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEII 57
D E+++ +AF +FD GN I E+ V+ LG T+ ++ E+I
Sbjct: 80 DSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMI 125
Score = 31.7 bits (73), Expect = 0.046
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 92 EELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQD-TGRIPYE 148
E +AF DKD + + L +M G+ T E+ +M++ VD D G I +
Sbjct: 10 AEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMIN-EVDADGNGTIDFP 66
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 99.5 bits (249), Expect = 1e-27
Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 5/130 (3%)
Query: 19 DAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVS 78
+AF +FD + +I E+ TV+R+LG P+EA++ +++ + I S FL ++S
Sbjct: 15 EAFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHAIEFSEFLALMS 74
Query: 79 GMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAV 138
+ S +ELL+AF+ DK+ + L ++ GE T E+DEM+
Sbjct: 75 RQLKC----NDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREVS 130
Query: 139 DQDTGRIPYE 148
D G I +
Sbjct: 131 DGS-GEINIK 139
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 99.1 bits (248), Expect = 1e-27
Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 8/138 (5%)
Query: 19 DAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVS 78
+ F IFD + + E+G+ LR+LG PT A++ I L+ F +
Sbjct: 9 ECFQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTIK---GQLNAKEFDLATFKTVYR 65
Query: 79 GMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTA- 137
I ++E+L AFR LDK+ + + L +L++ G+ T E++E+M
Sbjct: 66 KPIKTPT---EQSKEMLDAFRALDKEGNGTIQEAELRQLLLNLGDALTSSEVEELMKEVS 122
Query: 138 VDQDTGRIPYEYYINHIM 155
V D G I YE +++ ++
Sbjct: 123 VSGD-GAINYESFVDMLV 139
Score = 36.7 bits (86), Expect = 7e-04
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 11 NDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEII 57
+ K++ DAF D GN TI E+ +L LG T ++++E++
Sbjct: 72 TEQSKEMLDAFRALDKEGNGTIQEAELRQLLLNLGDALTSSEVEELM 118
Score = 31.3 bits (72), Expect = 0.068
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 89 ASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDT 142
ASA+++ + F+ DKDN + E L + G+ T E++ + ++
Sbjct: 2 ASADQIQECFQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTIKGQ-LNAKE 54
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 99.5 bits (249), Expect = 2e-27
Identities = 32/143 (22%), Positives = 68/143 (47%), Gaps = 12/143 (8%)
Query: 19 DAFDIFDHAGNK--TIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGN--IALSRFL 74
D F++FD + +D ++G V R LG P D+ + + G + FL
Sbjct: 13 DVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDVFAVG---GTHKMGEKSLPFEEFL 69
Query: 75 PIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMM 134
P G++ + + + ++AF+T D++ + ++ L ++ GE + E++DE++
Sbjct: 70 PAYEGLMDCEQ---GTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEII 126
Query: 135 STA-VDQDT-GRIPYEYYINHIM 155
+ +D G + YE ++ +M
Sbjct: 127 KLTDLQEDLEGNVKYEDFVKKVM 149
Score = 36.4 bits (85), Expect = 0.001
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 12 DFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEII 57
+AF FD G I E+ VL ALG ++ D+ EII
Sbjct: 81 GTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEII 126
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 99.6 bits (249), Expect = 2e-27
Identities = 39/142 (27%), Positives = 70/142 (49%), Gaps = 9/142 (6%)
Query: 19 DAFDIFDHAGNK--TIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPI 76
+ FD+FD + +D +VG +LR LG PTEA + + T + E L LPI
Sbjct: 13 EVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQHGGTKKMGE-KAYKLEEILPI 71
Query: 77 VSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMST 136
M S++ +A+E ++AF+T D++ + + + ++ GE T ++ +++ +
Sbjct: 72 YEEMSSKD--TGTAADEFMEAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFTF 129
Query: 137 A---VDQDTGRIPYEYYINHIM 155
D D G I YE + +M
Sbjct: 130 CDIREDID-GNIKYEDLMKKVM 150
Score = 35.6 bits (83), Expect = 0.002
Identities = 16/56 (28%), Positives = 23/56 (41%)
Query: 12 DFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGN 67
+ +AF FD G I E+ VL+ LG TE +I C+ E +
Sbjct: 82 TAADEFMEAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFTFCDIREDID 137
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 98.8 bits (247), Expect = 4e-27
Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 11/143 (7%)
Query: 19 DAFDIFDHAGNKTIDCREVGTVLRALGGC-PTEADIQEIIVTCENPEFGNIALSRFLPIV 77
+AF + D + ID ++ A+G ++ +I E G I + FL +
Sbjct: 29 EAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIK--EAS--GPINFTVFLTMF 84
Query: 78 SGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTA 137
+ + ++ AF+ LD D K + K +L +L+ G FTPEEI M +
Sbjct: 85 GEKLKG----ADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMWAAF 140
Query: 138 -VDQDTGRIPYEYYINHIMKSEE 159
D G + Y+ I E+
Sbjct: 141 PPDVA-GNVDYKNICYVITHGED 162
Score = 36.8 bits (86), Expect = 9e-04
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 12 DFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEII 57
D E I AF + D G +I + +L GG T +I+ +
Sbjct: 92 DPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMW 137
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 98.4 bits (246), Expect = 7e-27
Identities = 50/139 (35%), Positives = 79/139 (56%), Gaps = 6/139 (4%)
Query: 19 DAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVS 78
+AF +FD G+ TI +E+GTV+R+LG PTEA++Q++I + G I FL +++
Sbjct: 15 EAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMA 74
Query: 79 GMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTA- 137
+ + S EE+ +AFR DKD Y+ L +M GE T EE+DEM+ A
Sbjct: 75 RKMKD----TDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREAD 130
Query: 138 VDQDTGRIPYEYYINHIMK 156
+D D G++ YE ++ +
Sbjct: 131 IDGD-GQVNYEEFVQMMTA 148
Score = 50.2 bits (121), Expect = 2e-08
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 11/102 (10%)
Query: 12 DFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEF-----G 66
D E++I +AF +FD GN I E+ V+ LG T+ ++ E+I E G
Sbjct: 81 DSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIR-----EADIDGDG 135
Query: 67 NIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSY 108
+ F+ +++ A E + R + K + +
Sbjct: 136 QVNYEEFVQMMTAKGGG-GGAAARKEVIRNKIRAIGKMARVF 176
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 96.5 bits (241), Expect = 3e-26
Identities = 48/163 (29%), Positives = 76/163 (46%), Gaps = 17/163 (10%)
Query: 11 NDFEKKIAD------------AFDIFDHAGNK-TIDCREVGTVLRALGGCPTEADIQEII 57
+D K + AFDIF +I +E+G V+R LG PT ++QE+I
Sbjct: 2 DDIYKAAVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMI 61
Query: 58 VTCENPEFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKL 117
+ G + FL ++ + + + S EEL FR DK+ Y+D E L +
Sbjct: 62 DEVDEDGSGTVDFDEFLVMMVRSMKD-DSKGKSEEELSDLFRMFDKNADGYIDLEELKIM 120
Query: 118 MIEEGEPFTPEEIDEMMSTA-VDQDTGRIPYEYYINHIMKSEE 159
+ GE T ++I+E+M + D GRI Y+ ++ MK E
Sbjct: 121 LQATGETITEDDIEELMKDGDKNND-GRIDYDEFLE-FMKGVE 161
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 96.1 bits (240), Expect = 3e-26
Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 3/131 (2%)
Query: 19 DAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVS 78
AFD+FD G I +E+GTV+R LG PT+ ++ II + G I FL ++
Sbjct: 24 AAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMV 83
Query: 79 GMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTA- 137
+ E + S EEL FR DK+ ++D E L +++ GE T E+I+++M +
Sbjct: 84 RQMKE-DAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSD 142
Query: 138 VDQDTGRIPYE 148
+ D GRI ++
Sbjct: 143 KNND-GRIDFD 152
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 96.1 bits (240), Expect = 4e-26
Identities = 48/149 (32%), Positives = 79/149 (53%), Gaps = 6/149 (4%)
Query: 1 MSLSEEVHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTC 60
V +T + +++I +AFD+FD G+ TID +E+ +RALG P + +I+++I
Sbjct: 14 DQKKGRVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEI 73
Query: 61 ENPEFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIE 120
+ G I FL +++ + E S EE+LKAFR D DN + + L ++ E
Sbjct: 74 DKDGSGTIDFEEFLTMMTAKMGER----DSREEILKAFRLFDDDNSGTITIKDLRRVAKE 129
Query: 121 EGEPFTPEEIDEMMSTA-VDQDTGRIPYE 148
GE T EE+ EM++ A + D I +
Sbjct: 130 LGENLTEEELQEMIAEADRNDD-NEIDED 157
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 95.2 bits (238), Expect = 5e-26
Identities = 44/133 (33%), Positives = 71/133 (53%), Gaps = 6/133 (4%)
Query: 17 IADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPI 76
I +AFD+FD G TID +E+ +RALG P + +I+++I + G + FL +
Sbjct: 8 IREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDFLTV 67
Query: 77 VSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMST 136
++ +SE + EE+LKAF+ D D + + L ++ E GE T EE+ EM+
Sbjct: 68 MTQKMSEK----DTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDE 123
Query: 137 A-VDQDTGRIPYE 148
A D D G + +
Sbjct: 124 ADRDGD-GEVSEQ 135
Score = 36.7 bits (86), Expect = 7e-04
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 12 DFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEII 57
D +++I AF +FD I + + V + LG T+ ++QE+I
Sbjct: 76 DTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMI 121
Score = 34.4 bits (80), Expect = 0.005
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 92 EELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQD-TGRIPYE 148
+E+ +AF D D +D + L M G EEI +M+S +D++ TG++ +
Sbjct: 6 QEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMIS-EIDKEGTGKMNFG 62
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 95.7 bits (239), Expect = 6e-26
Identities = 33/142 (23%), Positives = 63/142 (44%), Gaps = 7/142 (4%)
Query: 17 IADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPI 76
I +AF +FD + +D E+ ++ALG + +I ++I ++ + F +
Sbjct: 25 IYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLIDEYDSEGRHLMKYDDFYIV 84
Query: 77 VSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMST 136
+ I + +E+ +AF+ D D+ + + L ++ E GE T EE+ M+
Sbjct: 85 MGEKILKR----DPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIEE 140
Query: 137 A-VDQDTGRIPYEYYINHIMKS 157
+D D G I +I I
Sbjct: 141 FDLDGD-GEINENEFIA-ICTD 160
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 96.2 bits (240), Expect = 7e-26
Identities = 32/142 (22%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
Query: 19 DAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVS 78
+AF + D + I ++ +LG TE ++ ++ E P G I + FL I
Sbjct: 61 EAFQLIDQDKDGFISKNDIRATFDSLGRLCTEQELDSMV--AEAP--GPINFTMFLTIFG 116
Query: 79 GMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTA- 137
I+ + ++ AF D+ + +E L + + GE F+ +E+D+ +S A
Sbjct: 117 DRIAGTD----EEDVIVNAFNLFDEGD-GKCKEETLKRSLTTWGEKFSQDEVDQALSEAP 171
Query: 138 VDQDTGRIPYEYYINHIMKSEE 159
+D + G I + + + K +
Sbjct: 172 IDGN-GLIDIKKFAQILTKGAK 192
Score = 32.7 bits (75), Expect = 0.032
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 11 NDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEII 57
D E I +AF++FD G+ + L G ++ ++ + +
Sbjct: 122 TDEEDVIVNAFNLFDE-GDGKCKEETLKRSLTTWGEKFSQDEVDQAL 167
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 94.9 bits (237), Expect = 8e-26
Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 3/132 (2%)
Query: 19 DAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVS 78
+AF FD + I+CR++G +R +G PTE ++ E+ G++ F+ ++
Sbjct: 15 EAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFVELMG 74
Query: 79 GMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEE-GEPFTPEEIDEMMSTA 137
+ +EL AFR D + + L + M G +I+E++
Sbjct: 75 PKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDV 134
Query: 138 -VDQDTGRIPYE 148
++ D GR+ +E
Sbjct: 135 DLNGD-GRVDFE 145
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 94.9 bits (237), Expect = 9e-26
Identities = 33/145 (22%), Positives = 68/145 (46%), Gaps = 3/145 (2%)
Query: 17 IADAFDIFDHA-GNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLP 75
+ AF F+ G+ + ++G +L LG T++ I+++I + G+I F
Sbjct: 15 LETAFRDFETPEGSGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPFGNGDIDFDSFKI 74
Query: 76 IVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMS 135
I + + E +EL +AFR DK+ Y+ + + +++ E E + E++D M+
Sbjct: 75 IGARFLGEEVNPEQMQQELREAFRLYDKEGNGYISTDVMREILAELDETLSSEDLDAMID 134
Query: 136 TA-VDQDTGRIPYEYYINHIMKSEE 159
D G + +E ++ + +E
Sbjct: 135 EIDADGS-GTVDFEEFMGVMTGGDE 158
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 81.1 bits (201), Expect = 4e-20
Identities = 29/133 (21%), Positives = 55/133 (41%), Gaps = 9/133 (6%)
Query: 17 IADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPI 76
+ + F + D + TI E+ L+ +G E++I++++ + + G I F+
Sbjct: 12 LKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAA 71
Query: 77 VSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMST 136
+ E L+ AF DKD Y+ + + + + G ID+M+
Sbjct: 72 TVHLNKLE-----REENLVSAFSYFDKDGSGYITLDEIQQACKDFG--LDDIHIDDMIKE 124
Query: 137 A-VDQDTGRIPYE 148
D D G+I Y
Sbjct: 125 IDQDND-GQIDYG 136
Score = 34.9 bits (81), Expect = 0.005
Identities = 19/107 (17%), Positives = 34/107 (31%), Gaps = 15/107 (14%)
Query: 12 DFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEF-----G 66
+ E+ + AF FD G+ I E+ + G + I ++I E G
Sbjct: 79 EREENLVSAFSYFDKDGSGYITLDEIQQACKDFGL--DDIHIDDMIK-----EIDQDNDG 131
Query: 67 NIALSRFLPIVSGMISE---NRFQPASAEELLKAFRTLDKDNKSYLD 110
I F ++ R L A +D + ++
Sbjct: 132 QIDYGEFAAMMRKRKGNGGIGRRTMRKTLNLRDALGLVDNGSNQVIE 178
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 80.5 bits (199), Expect = 1e-19
Identities = 25/142 (17%), Positives = 51/142 (35%), Gaps = 13/142 (9%)
Query: 15 KKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFL 74
+ +A F D G++++D E L LG +A+ + + + G + L FL
Sbjct: 37 QGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEFL 96
Query: 75 PIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKL-------MIEEGEPFTP 127
+ +S+ R + AF LD+ + + L + + GE
Sbjct: 97 RALRPPMSQAR-----EAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTED 151
Query: 128 EEIDEMMSTAVDQD-TGRIPYE 148
E + + + G++
Sbjct: 152 EVLRRFLDNFDSSEKDGQVTLA 173
Score = 26.9 bits (60), Expect = 3.0
Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 7/53 (13%)
Query: 12 DFEKKIADAFDIFDHAGNKTIDCREVGTVLRA-------LGGCPTEADIQEII 57
E IA AF D +G+ + ++ V G + ++ +
Sbjct: 106 AREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFL 158
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 79.1 bits (196), Expect = 1e-19
Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 9/133 (6%)
Query: 17 IADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPI 76
+ + F++ D + I E+ L+ +G E++I +++ + G I F+
Sbjct: 29 LKEMFNMIDADKSGQITFEELKAGLKRVGANLKESEILDLMQAADVDNSGTIDYKEFI-- 86
Query: 77 VSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMST 136
+ + + + L AF DKD Y+ + L + E G I+E+M
Sbjct: 87 ---AATLHLNKIEREDHLFAAFTYFDKDGSGYITPDELQQACEEFG--VEDVRIEELMRD 141
Query: 137 A-VDQDTGRIPYE 148
D D GRI Y
Sbjct: 142 VDQDND-GRIDYN 153
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 79.6 bits (197), Expect = 2e-19
Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 9/137 (6%)
Query: 15 KKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFL 74
+ + F D + T+ +E+ L+ +G DI +++ ++ G I + FL
Sbjct: 57 NNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQIHYTDFL 116
Query: 75 PIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEE--GEPFTPEEIDE 132
I + + E L F+ D D + E L ++ + P + ID
Sbjct: 117 AA---TIDKQTYL--KKEVCLIPFKFFDIDGNGKISVEELKRIFGRDDIENPLIDKAIDS 171
Query: 133 MMSTA-VDQDTGRIPYE 148
++ ++ D G I +
Sbjct: 172 LLQEVDLNGD-GEIDFH 187
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 76.0 bits (188), Expect = 1e-18
Identities = 26/131 (19%), Positives = 45/131 (34%), Gaps = 8/131 (6%)
Query: 19 DAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVS 78
F D G+ + EV + E +Q I + + G I + F
Sbjct: 4 ALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYG 63
Query: 79 GMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTA- 137
+ ++ L ++ +D D L KE +T + G E++ E + A
Sbjct: 64 SIQGQDLSD--DKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKHGI----EKVAEQVMKAD 117
Query: 138 VDQDTGRIPYE 148
+ D G I E
Sbjct: 118 ANGD-GYITLE 127
Score = 33.7 bits (78), Expect = 0.009
Identities = 7/46 (15%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Query: 12 DFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEII 57
D + + + + D G+ + EV + + G + E +
Sbjct: 72 DDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKHG----IEKVAEQV 113
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 76.7 bits (189), Expect = 2e-18
Identities = 26/151 (17%), Positives = 43/151 (28%), Gaps = 18/151 (11%)
Query: 15 KKIADAFDIFDHAGNKTIDCRE-----VGTVLRALGGCPTEADIQEIIV-----TCENPE 64
K+ FD D GN I E + L P + ++ V C
Sbjct: 20 KRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGMEY 79
Query: 65 FGNIALSRFLPIVSGMISENRFQPA------SAEELLKAFRTLDKDNKSYLDKEYLTKLM 118
IA +FL + + + A E F DKD + +
Sbjct: 80 GKEIAFPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEWKAYG 139
Query: 119 IEEGEPFTPEEIDEMMSTA-VDQDTGRIPYE 148
G + E+ + +D G + +
Sbjct: 140 KISGISPSQEDCEATFRHCDLDNA-GDLDVD 169
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 75.0 bits (185), Expect = 1e-17
Identities = 22/148 (14%), Positives = 50/148 (33%), Gaps = 12/148 (8%)
Query: 14 EKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRF 73
+++ + F D G+ I E+ L + G + A ++++ + G I F
Sbjct: 26 NQELMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHMYDKNHSGEITFDEF 85
Query: 74 LPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEM 133
+ + + FR D LD + ++ G + + +
Sbjct: 86 KDLH-----------HFILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQAL 134
Query: 134 MSTAVDQDTGRIPYEYYINHIMKSEERL 161
M Q G + ++ Y+ + R+
Sbjct: 135 MRKFDRQRRGSLGFDDYV-ELSIFVCRV 161
Score = 45.0 bits (107), Expect = 2e-06
Identities = 15/76 (19%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 74 LPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEM 133
+P +G+ + + +EL++ FR +D D + L + G PF+ +++
Sbjct: 9 MPTSTGVYAPSARHMNDNQELMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKL 68
Query: 134 MSTAVDQD-TGRIPYE 148
+ D++ +G I ++
Sbjct: 69 LH-MYDKNHSGEITFD 83
Score = 43.1 bits (102), Expect = 7e-06
Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 11/93 (11%)
Query: 13 FEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSR 72
F + + F D +G+ +D EV L + G +E Q ++ + G++
Sbjct: 91 FILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGFDD 150
Query: 73 FLPIVSGMISENRFQPASAEELLKAFRTLDKDN 105
+ V I + F D++
Sbjct: 151 Y---VELSIFV--------CRVRNVFAFYDRER 172
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 73.8 bits (181), Expect = 1e-16
Identities = 25/163 (15%), Positives = 60/163 (36%), Gaps = 21/163 (12%)
Query: 17 IADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEAD------IQEIIVTCENPEFGNIAL 70
+ + FD G+ ++ +E+ +++ L +A ++ + + G I +
Sbjct: 18 FFEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQRDDGKIGI 77
Query: 71 SRFLPIVS----GMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFT 126
++ ++ Q S EE +K +R D D+ +++ E L + + E
Sbjct: 78 VELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEELKNFLKDLLEKAN 137
Query: 127 P--------EEIDEMMSTA-VDQDTGRIPYEYYINHIMKSEER 160
E D M+ + D G++ ++ +E
Sbjct: 138 KTVDDTKLAEYTDLMLKLFDSNND-GKLELTEMA-RLLPVQEN 178
Score = 59.1 bits (143), Expect = 2e-11
Identities = 21/153 (13%), Positives = 50/153 (32%), Gaps = 16/153 (10%)
Query: 12 DFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEA--------DIQEIIVTCENP 63
++ + +D + I+ E+ L+ L + ++ ++
Sbjct: 100 KSCEEFMKTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSN 159
Query: 64 EFGNIALSRFLPIVS---GMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIE 120
G + L+ ++ + + + +E KAF D+D Y+D+ L L+ +
Sbjct: 160 NDGKLELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENELDALLKD 219
Query: 121 EGEPFTPE----EIDEMMSTAVDQDT-GRIPYE 148
E E I + G++
Sbjct: 220 LCEKNKQELDINNISTYKKNIMALSDGGKLYRT 252
Score = 35.2 bits (81), Expect = 0.004
Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 8/79 (10%)
Query: 90 SAEELLKAFRTLDKDNKSYLDKEYLTKLM------IEEGEPFTPEEIDEMMSTAVDQD-T 142
+A + + + D D YL+ + L L+ ++ E+ + Q
Sbjct: 14 TASQFFEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVD-QYGQRDD 72
Query: 143 GRIPYEYYINHIMKSEERL 161
G+I + + E L
Sbjct: 73 GKIGIVELAHVLPTEENFL 91
Score = 31.8 bits (72), Expect = 0.067
Identities = 13/60 (21%), Positives = 23/60 (38%)
Query: 1 MSLSEEVHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTC 60
+ + K+ AF+++D GN ID E+ +L+ L + I T
Sbjct: 177 ENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENELDALLKDLCEKNKQELDINNISTY 236
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 73.7 bits (181), Expect = 2e-16
Identities = 21/155 (13%), Positives = 53/155 (34%), Gaps = 15/155 (9%)
Query: 8 HITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGN 67
++ + + F +G+ +++ VL E ++++ V EN G
Sbjct: 115 MLSEEDTNILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVENDTKGR 174
Query: 68 IALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTP 127
++ + + L+ FR +D ++ L ++ + + G
Sbjct: 175 MSYITLV---AVANDL--------AALVADFRKIDTNSNGTLSRKEFREHFVRLGFD-KK 222
Query: 128 EEIDEMMSTAVDQD-TGRIPYEYYINHIMKSEERL 161
D + D+D + + + Y+ H+ L
Sbjct: 223 SVQDALFR-YADEDESDDVGFSEYV-HLGLCLLVL 255
Score = 57.5 bits (139), Expect = 1e-10
Identities = 21/144 (14%), Positives = 43/144 (29%), Gaps = 25/144 (17%)
Query: 12 DFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEF-----G 66
+ + F D N T+ +E LG ++ +
Sbjct: 185 NDLAALVADFRKIDTNSNGTLSRKEFREHFVRLGFD-KKSVQDALF-----RYADEDESD 238
Query: 67 NIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEG-EPF 125
++ S + V + L + D D L KE + K++ +
Sbjct: 239 DVGFSEY---VHLGLCL--------LVLRILYAFADFDKSGQLSKEEVQKVLEDAHIPES 287
Query: 126 TPEEIDEMMSTAVDQD-TGRIPYE 148
++ + S VD D + + Y+
Sbjct: 288 ARKKFEHQFS-VVDVDDSKSLSYQ 310
Score = 51.7 bits (124), Expect = 1e-08
Identities = 19/148 (12%), Positives = 44/148 (29%), Gaps = 7/148 (4%)
Query: 14 EKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRF 73
E++ +D D RE R A+ Q + ++ E +R
Sbjct: 50 EQEQKAKLAEYDQKVQNEFDARERAEREREAARGDAAAEKQRLASLLKDLEDDASGYNRL 109
Query: 74 LPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEM 133
P + E+ L + F + + L +++ + + + ++
Sbjct: 110 RPSKPMLSEEDT------NILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKL 163
Query: 134 MSTAVDQDTGRIPYEYYINHIMKSEERL 161
+ GR+ Y + + L
Sbjct: 164 FVMVENDTKGRMSYITLV-AVANDLAAL 190
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 70.2 bits (172), Expect = 6e-16
Identities = 22/151 (14%), Positives = 44/151 (29%), Gaps = 18/151 (11%)
Query: 15 KKIADAFDIFDHAGNKTIDCRE-----VGTVLRALGGCPTEADIQEIIV-----TCENPE 64
+ F+ D N I E V+ LG P +A + V
Sbjct: 16 GRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAGMKY 75
Query: 65 FGNIALSRFLPIVSGMISENRFQPASAEE------LLKAFRTLDKDNKSYLDKEYLTKLM 118
++ + ++ + A E F +DKD + +
Sbjct: 76 GVETDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEWKAYT 135
Query: 119 IEEGEPFTPEEIDEMMSTA-VDQDTGRIPYE 148
G + E+ +E +D+ G++ +
Sbjct: 136 KAAGIIQSSEDCEETFRVCDIDES-GQLDVD 165
Score = 35.9 bits (83), Expect = 0.002
Identities = 11/57 (19%), Positives = 15/57 (26%)
Query: 1 MSLSEEVHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEII 57
+ FDI D N I E +A G + D +E
Sbjct: 95 ELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEWKAYTKAAGIIQSSEDCEETF 151
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 70.0 bits (172), Expect = 1e-15
Identities = 22/140 (15%), Positives = 48/140 (34%), Gaps = 14/140 (10%)
Query: 15 KKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFL 74
+K+ F + D G I ++ L G + ++ ++ G I + F+
Sbjct: 52 EKLKSTFLVLDEDGKGYITKEQLKKGLEKDG-LKLPYNFDLLLDQIDSDGSGKIDYTEFI 110
Query: 75 PIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTP-----EE 129
+ + + S + + AFR D DN + L ++ +
Sbjct: 111 ---AAALDRKQL---SKKLIYCAFRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNR 164
Query: 130 IDEMMSTA-VDQDTGRIPYE 148
+ M+ + D G+I +
Sbjct: 165 VKRMIRDVDKNND-GKIDFH 183
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 66.5 bits (163), Expect = 1e-14
Identities = 31/152 (20%), Positives = 57/152 (37%), Gaps = 20/152 (13%)
Query: 9 ITNDFEKKIADAFDIFDHAGNKTIDCRE-----------VGTVLRALGGCPTEADIQEII 57
T + K++ F D+ G+ +D +E G + L EA++ I+
Sbjct: 34 TTLEETKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHIL 93
Query: 58 VTCENPEFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKL 117
+ + G I S F+ + ++ S E LL AF+ D D + E L +L
Sbjct: 94 QSVDFDRNGYIEYSEFV-----TVCMDKQLLLSRERLLAAFQQFDSDGSGKITNEELGRL 148
Query: 118 MIEEGEPFTPEEIDEMMSTA-VDQDTGRIPYE 148
E +++ + D G + +E
Sbjct: 149 FGVTE--VDDETWHQVLQECDKNND-GEVDFE 177
Score = 37.3 bits (87), Expect = 8e-04
Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 18/99 (18%)
Query: 80 MISENRFQPASAEELLKAFRTLDKDNKSYLDKE-----------YLTKLMIEEGEPFTPE 128
+ +EL + FR LD + LD++ + + +
Sbjct: 28 FMGSKLTTLEETKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEA 87
Query: 129 EIDEMMSTAVDQD-TGRIPYEYYIN---HIMK--SEERL 161
E+D ++ +VD D G I Y ++ S ERL
Sbjct: 88 EVDHILQ-SVDFDRNGYIEYSEFVTVCMDKQLLLSRERL 125
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 63.2 bits (154), Expect = 2e-13
Identities = 24/155 (15%), Positives = 44/155 (28%), Gaps = 21/155 (13%)
Query: 12 DFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEF------ 65
++E++IA F FD GN ID + +A+ A +
Sbjct: 1 EYERRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGL 60
Query: 66 ---------GNIALSRFLPIVSGMISEN--RFQPASAEELLKAFRTLDKDNKSYLDKEYL 114
I F+ + + RF + L A D D +
Sbjct: 61 AGIADRDGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADT 120
Query: 115 TKLMIEEGEPFTPEEIDEMMSTA-VDQDTGRIPYE 148
+ + G + + + D D G++
Sbjct: 121 ARALTAFG--VPEDLARQAAAALDTDGD-GKVGET 152
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 63.5 bits (155), Expect = 2e-13
Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 11/127 (8%)
Query: 15 KKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFL 74
K I + F D N ++ RE+ TVL ++G + DI I+ + + GNI + F+
Sbjct: 39 KYINELFYKLDTNHNGSLSHREIYTVLASVG--IKKWDINRILQALDINDRGNITYTEFM 96
Query: 75 PIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMM 134
+G + L AF +DKD Y+ K + L+ ++ +ID
Sbjct: 97 ---AGCYRWKNI---ESTFLKAAFNKIDKDEDGYISKSDIVSLVHDKV--LDNNDIDNFF 148
Query: 135 STAVDQD 141
+V
Sbjct: 149 L-SVHSI 154
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 63.0 bits (153), Expect = 5e-13
Identities = 20/146 (13%), Positives = 45/146 (30%), Gaps = 18/146 (12%)
Query: 15 KKIADAFDIFDHAGNKTIDCREVGTVL-RALGGCPTEADIQEIIVTCENPEF-------- 65
++ + F FD + EV + L + +++I +
Sbjct: 48 QRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLEN 107
Query: 66 -GNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEG-E 123
G+ FL EL F +D +D+E + + +
Sbjct: 108 KGSEDFVEFL-----EFRLMLCYIYDFFELTVMFDEIDASGNMLVDEEEFKRAVPKLEAW 162
Query: 124 PFTPEEIDEMMSTAVDQD-TGRIPYE 148
E+ + +D++ TG + ++
Sbjct: 163 GAKVEDPAALFK-ELDKNGTGSVTFD 187
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 61.1 bits (149), Expect = 1e-12
Identities = 27/149 (18%), Positives = 52/149 (34%), Gaps = 13/149 (8%)
Query: 14 EKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCP-TEADIQEIIVTCENPEFGNIALSR 72
+ + + F D + I E+ L P ++ II + + S
Sbjct: 6 QSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSE 65
Query: 73 FLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDE 132
F + + + FRT D+DN +DK L + + G + + D
Sbjct: 66 FTGVWKYI-----------TDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDI 114
Query: 133 MMSTAVDQDTGRIPYEYYINHIMKSEERL 161
++ Q G+I ++ +I +RL
Sbjct: 115 LIRKFDRQGRGQIAFDDFI-QGCIVLQRL 142
Score = 43.0 bits (102), Expect = 7e-06
Identities = 19/93 (20%), Positives = 30/93 (32%), Gaps = 11/93 (11%)
Query: 13 FEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSR 72
+ + F +D + ID E+ L G ++ +I + G IA
Sbjct: 72 YITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDD 131
Query: 73 FLPIVSGMISENRFQPASAEELLKAFRTLDKDN 105
F + G I + L FR D D
Sbjct: 132 F---IQGCIVL--------QRLTDIFRRYDTDQ 153
Score = 37.6 bits (88), Expect = 5e-04
Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 87 QPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEG-EPFTPEEIDEMMSTAVDQD-TGR 144
L F+ +DKD + L + + PF P + ++S D++
Sbjct: 2 ALPDQSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIIS-MFDRENKAG 60
Query: 145 IPYE 148
+ +
Sbjct: 61 VNFS 64
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 59.0 bits (143), Expect = 1e-11
Identities = 15/151 (9%), Positives = 43/151 (28%), Gaps = 13/151 (8%)
Query: 10 TNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGC---------PTEADIQEIIVTC 60
+K+ D G+ I + + + T + +
Sbjct: 9 RAYHLRKMKTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQL 68
Query: 61 ENPEFGNIALSRFLPIVSGMISE--NRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLM 118
I++ + + + + + + L + +D D Y+ +
Sbjct: 69 GLAPGVRISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFL 128
Query: 119 IEEGEPFTPEEIDEMMSTA-VDQDTGRIPYE 148
G T ++ +T +++ G+I +
Sbjct: 129 QAVGPDLTDDKAITCFNTLDFNKN-GQISRD 158
Score = 28.2 bits (63), Expect = 0.89
Identities = 11/107 (10%), Positives = 24/107 (22%), Gaps = 41/107 (38%)
Query: 14 EKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRF 73
+ +D D + + E L+A+G T+
Sbjct: 101 VIQSLIMYDCIDTDKDGYVSLPEFKAFLQAVGPDLTDDKAITC----------------- 143
Query: 74 LPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIE 120
F TLD + + ++ + +
Sbjct: 144 ------------------------FNTLDFNKNGQISRDEFLVTVND 166
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 56.5 bits (137), Expect = 1e-11
Identities = 23/81 (28%), Positives = 40/81 (49%)
Query: 4 SEEVHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENP 63
++ +T + +++ +AF +FD + + E+GTV+RALG PT+ I EI+ +
Sbjct: 3 EQKKVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKD 62
Query: 64 EFGNIALSRFLPIVSGMISEN 84
G FL I+ E
Sbjct: 63 NSGKFDQETFLTIMLEYGQEV 83
Score = 39.2 bits (92), Expect = 5e-05
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 92 EELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQD-TGRIPYE 148
+E +AF+ DKDN + L E L +M G T ++I E++ D+D +G+ E
Sbjct: 14 QEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKD-YDKDNSGKFDQE 70
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 58.2 bits (141), Expect = 2e-11
Identities = 22/154 (14%), Positives = 49/154 (31%), Gaps = 22/154 (14%)
Query: 14 EKKIADAFDIFDHAGNKTIDCRE----VGTVLRALGGCPTEADIQEIIVTCENPEF---- 65
++ FD +D GN ++ + + A G A++Q +
Sbjct: 6 SDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAK 65
Query: 66 -------GNIALSRFLPIVSGMISEN---RFQPASAEELLKAFRTLDKDNKSYLDKEYLT 115
G++ +F+ + +I E F + DK+ ++ +
Sbjct: 66 EAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFA 125
Query: 116 KLMIEEGEPFTPEEIDEMMSTAVDQD-TGRIPYE 148
+ G + E E + VD + G + +
Sbjct: 126 AWLTALG--MSKAEAAEAFN-QVDTNGNGELSLD 156
Score = 32.4 bits (74), Expect = 0.037
Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 2/57 (3%)
Query: 1 MSLSEEVHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEII 57
+ E + + D + I+ E L ALG ++A+ E
Sbjct: 88 IFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFAAWLTALGM--SKAEAAEAF 142
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 57.4 bits (139), Expect = 4e-11
Identities = 16/147 (10%), Positives = 41/147 (27%), Gaps = 15/147 (10%)
Query: 14 EKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEAD-----IQEIIVTCENPEF--- 65
+K+ F+ D + I + ++ + + + +
Sbjct: 5 VQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAV 64
Query: 66 ---GNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEG 122
I + F+ + M+ + L FR +D + + + ++ G
Sbjct: 65 AGGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLG 124
Query: 123 EPFTPEEIDEMMSTAVDQD-TGRIPYE 148
A+D + G + E
Sbjct: 125 --LDKTMAPASFD-AIDTNNDGLLSLE 148
Score = 30.1 bits (68), Expect = 0.20
Identities = 8/57 (14%), Positives = 14/57 (24%), Gaps = 2/57 (3%)
Query: 1 MSLSEEVHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEII 57
+ + + E + F D + I E G LG +
Sbjct: 80 KEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLGL--DKTMAPASF 134
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 55.3 bits (134), Expect = 6e-11
Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 15/119 (12%)
Query: 43 ALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLD 102
A G +AD+ + CE + F V SA+++ KAF +D
Sbjct: 2 AFSGILADADVAAALKACEAA--DSFNYKAFFAKVG-------LTAKSADDIKKAFFVID 52
Query: 103 KDNKSYLDKEYL---TKLMIEEGEPFTPEEIDEMMSTAVDQDT-GRIPYEYYINHIMKS 157
+D +++++ L ++ T E + A D D G I + + ++K+
Sbjct: 53 QDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLK-AGDSDGDGAIGVDEWA-ALVKA 109
Score = 28.4 bits (64), Expect = 0.47
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 10 TNDFEKKIADAFDIFDHAGNKTIDCREVGTVLR---ALGGCPTEADIQEII 57
T I AF + D + I+ E+ L+ A T+A+ + +
Sbjct: 37 TAKSADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFL 87
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 54.9 bits (133), Expect = 8e-11
Identities = 22/119 (18%), Positives = 48/119 (40%), Gaps = 15/119 (12%)
Query: 43 ALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLD 102
A DI++ + + G+ +F +V + SA ++ K F+ +D
Sbjct: 2 AAKDLLKADDIKKALDAVKAE--GSFNHKKFFALVG-------LKAMSANDVKKVFKAID 52
Query: 103 KDNKSYLDKEYLTKLMIE---EGEPFTPEEIDEMMSTAVDQD-TGRIPYEYYINHIMKS 157
D ++++E L ++ +G T E + A D+D G+I + + ++
Sbjct: 53 ADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLK-AADKDGDGKIGIDEFET-LVHE 109
Score = 31.4 bits (72), Expect = 0.038
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 7 VHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRAL---GGCPTEADIQEII 57
V + + F D + I+ E+ VL++ G T+A+ + +
Sbjct: 34 VGLKAMSANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFL 87
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 55.2 bits (133), Expect = 4e-10
Identities = 20/160 (12%), Positives = 44/160 (27%), Gaps = 23/160 (14%)
Query: 15 KKIADAFDIFDHAGNKTIDCREVGTVLRALGGC--PTEADIQEIIVTCEN---------- 62
++ FD FD + ++ EV + T+ ++++
Sbjct: 36 SRLYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEPV 95
Query: 63 -----PEFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKL 117
++ + +R A + LD D +D + L +
Sbjct: 96 NGLLREDW--VEANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGDGTVDVDELKTM 153
Query: 118 MIEEGEPFTPEEIDEMMSTA-VDQDTGRIPYEYYINHIMK 156
M E A D+ G++ ++ K
Sbjct: 154 MKAFD--VPQEAAYTFFEKADTDKS-GKLERTELVHLFRK 190
Score = 30.6 bits (69), Expect = 0.15
Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 5 EEVHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEII 57
E + +D+ D G+ T+D E+ T+++A +
Sbjct: 118 ERRGEPSLIALLSNSYYDVLDDDGDGTVDVDELKTMMKAFDV--PQEAAYTFF 168
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 53.0 bits (128), Expect = 4e-10
Identities = 21/104 (20%), Positives = 43/104 (41%), Gaps = 14/104 (13%)
Query: 49 TEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSY 108
DI + I ++P G RF + + + + + ++ + F LDKD +
Sbjct: 7 KADDINKAISAFKDP--GTFDYKRFFHL---VGLKGK----TDAQVKEVFEILDKDQSGF 57
Query: 109 LDKEYLTKLMIE---EGEPFTPEEIDEMMSTAVDQD-TGRIPYE 148
+++E L ++ G E +++ A D D G+I +
Sbjct: 58 IEEEELKGVLKGFSAHGRDLNDTETKALLA-AGDSDHDGKIGAD 100
Score = 29.8 bits (68), Expect = 0.13
Identities = 8/50 (16%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 11 NDFEKKIADAFDIFDHAGNKTIDCREVGTVLRAL---GGCPTEADIQEII 57
+ ++ + F+I D + I+ E+ VL+ G + + + ++
Sbjct: 37 GKTDAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALL 86
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 55.8 bits (134), Expect = 4e-10
Identities = 24/167 (14%), Positives = 46/167 (27%), Gaps = 24/167 (14%)
Query: 19 DAFDIFDHAGNKTIDCREVGTVLRALG--GCPTEADIQEIIVTCENPEF--------GNI 68
+ FD N I+ +E+ R + P + E + + G +
Sbjct: 15 QIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDATFDGRL 74
Query: 69 ALSRFLPIVSGMISE------NRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIE-- 120
+ ++ ++ E +K +R D D+ Y+ L + +
Sbjct: 75 QIEELANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDADSSGYISAAELKNFLKDLF 134
Query: 121 ------EGEPFTPEEIDEMMSTAVDQDTGRIPYEYYINHIMKSEERL 161
E D MM GR+ + E L
Sbjct: 135 LQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLARILALQENFL 181
Score = 49.7 bits (118), Expect = 5e-08
Identities = 20/160 (12%), Positives = 48/160 (30%), Gaps = 23/160 (14%)
Query: 12 DFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCP--------TEADIQEIIVTCENP 63
D + + +D + I E+ L+ L + ++ +
Sbjct: 101 DNSVEFMKIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKN 160
Query: 64 EFGNIALSRFLPIVS-------GMISENRFQPASAEELLKAFRTLDKDNKSYLD----KE 112
+ G + L+ I++ + Q + K F D L+
Sbjct: 161 KDGRLDLNDLARILALQENFLLQFKMDASSQVERKRDFEKIFAHYDVSRTGALEGPEVDG 220
Query: 113 YLTKLMIEEGEPFTPEEIDE---MMSTAVDQDT-GRIPYE 148
++ +M + ++D+ + T D + G+I
Sbjct: 221 FVKDMMELVRPSISGGDLDKFRECLLTHCDMNKDGKIQKS 260
Score = 33.5 bits (76), Expect = 0.019
Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 10/88 (11%)
Query: 82 SENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTP----------EEID 131
S++ F A L+ ++ D D+ Y++ + L + P +
Sbjct: 1 SDSAFANLDAAGFLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKK 60
Query: 132 EMMSTAVDQDTGRIPYEYYINHIMKSEE 159
MS GR+ E N I+ EE
Sbjct: 61 SFMSAYDATFDGRLQIEELANMILPQEE 88
Score = 26.2 bits (57), Expect = 5.8
Identities = 4/53 (7%), Positives = 16/53 (30%)
Query: 10 TNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCEN 62
+ ++ F +D + ++ EV ++ + + +
Sbjct: 191 QVERKRDFEKIFAHYDVSRTGALEGPEVDGFVKDMMELVRPSISGGDLDKFRE 243
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 52.1 bits (126), Expect = 5e-10
Identities = 21/68 (30%), Positives = 33/68 (48%)
Query: 17 IADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPI 76
I +AFD+FD +ID E+ +RALG + +I E++ + G I FL I
Sbjct: 9 IKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGFDDFLDI 68
Query: 77 VSGMISEN 84
++ I
Sbjct: 69 MTEKIKNR 76
Score = 37.9 bits (89), Expect = 1e-04
Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 92 EELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQD-TGRIPYEYY 150
+E+ +AF D + +D L M G EI E+M+ D++ G I ++ +
Sbjct: 7 QEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMN-EYDREGNGYIGFDDF 65
Query: 151 INHIMK 156
++ + +
Sbjct: 66 LDIMTE 71
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 52.3 bits (126), Expect = 7e-10
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 90 SAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTA-VDQDTGRIPYE 148
S EE+ +AFR DKD Y+ L +M GE T EE+DEM+ A +D D G++ YE
Sbjct: 27 SEEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGD-GQVNYE 85
Query: 149 YYINHIMK 156
++ +
Sbjct: 86 EFVQMMTA 93
Score = 41.5 bits (98), Expect = 7e-06
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 12 DFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEII 57
D E++I +AF + D GN I E+ V+ LG T+ ++ E+I
Sbjct: 26 DSEEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMI 71
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 51.8 bits (125), Expect = 8e-10
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 6 EVHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEF 65
++ + + AFD+FD G I +E+GTV+R LG PT+ ++ II +
Sbjct: 11 RAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGS 70
Query: 66 GNIALSRFLPIVSGMISEN 84
G I FL ++ + E+
Sbjct: 71 GTIDFEEFLVMMVRQMKED 89
Score = 41.4 bits (98), Expect = 6e-06
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 92 EELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQD-TGRIPYE 148
E AF D D + + L +M G+ T EE+D ++ VD+D +G I +E
Sbjct: 20 AEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIE-EVDEDGSGTIDFE 76
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 51.3 bits (124), Expect = 8e-10
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 89 ASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDT-GRIPY 147
A E+L AFR D+D ++ + L + M G+P EE+D M+ D D GR+ Y
Sbjct: 3 AGLEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIR-EADVDQDGRVNY 61
Query: 148 E 148
E
Sbjct: 62 E 62
Score = 40.6 bits (96), Expect = 9e-06
Identities = 10/46 (21%), Positives = 19/46 (41%)
Query: 12 DFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEII 57
+ + AF FD G+ I E+ + LG + ++ +I
Sbjct: 3 AGLEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMI 48
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 51.5 bits (124), Expect = 2e-09
Identities = 22/119 (18%), Positives = 46/119 (38%), Gaps = 15/119 (12%)
Query: 43 ALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLD 102
A+ + DI+ + +C+ + F V + +++ K F LD
Sbjct: 2 AITDILSAKDIESALSSCQAA--DSFNYKSFFSTVG-------LSSKTPDQIKKVFGILD 52
Query: 103 KDNKSYLDKEYLTKLMIE---EGEPFTPEEIDEMMSTAVDQDT-GRIPYEYYINHIMKS 157
+D ++++E L + T E ++ A D D G+I E + ++K+
Sbjct: 53 QDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLA-AGDTDGDGKIGVEEFQ-SLVKA 109
Score = 30.7 bits (70), Expect = 0.072
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 7 VHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCP---TEADIQEII 57
V +++ +I F I D + I+ E+ L+ T A+ + +
Sbjct: 34 VGLSSKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFL 87
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 52.2 bits (125), Expect = 2e-09
Identities = 14/108 (12%), Positives = 32/108 (29%), Gaps = 10/108 (9%)
Query: 4 SEEVHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENP 63
+ + + + FD ID + ++ LG T +++++I
Sbjct: 39 YSDEENLPEKLTAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGG 98
Query: 64 EFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDK 111
I+ F+ ++ G +LK + K
Sbjct: 99 VSDTISYRDFVNMMLG----------KRSAVLKLVMMFEGKANESSPK 136
Score = 42.9 bits (101), Expect = 5e-06
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 82 SENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQD 141
S+ P + + D +N+ +D L ++M + G P T E+ +M+S V
Sbjct: 40 SDEENLPEKLTAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMIS-EVTGG 98
Query: 142 -TGRIPYE 148
+ I Y
Sbjct: 99 VSDTISYR 106
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 52.2 bits (126), Expect = 2e-09
Identities = 30/140 (21%), Positives = 53/140 (37%), Gaps = 15/140 (10%)
Query: 15 KKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFL 74
K++ F D + ++ E + L L P +Q +I + G + F+
Sbjct: 6 KRLGKRFKKLDLDNSGSLSVEEFMS-LPELQQNPL---VQRVIDIFDTDGNGEVDFKEFI 61
Query: 75 PIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIE-EGEPFTPEE---- 129
VS + ++L AFR D D Y+ L +++ G +
Sbjct: 62 EGVSQFSVKG----DKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQI 117
Query: 130 IDEMMSTA-VDQDTGRIPYE 148
+D+ + A D D GRI +E
Sbjct: 118 VDKTIINADKDGD-GRISFE 136
Score = 34.1 bits (79), Expect = 0.008
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 11 NDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCP-TEADIQEII 57
D E+K+ AF I+D + I E+ VL+ + G + +Q+I+
Sbjct: 71 GDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIV 118
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 50.3 bits (121), Expect = 3e-09
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 90 SAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTA-VDQDTGRIPYE 148
+ EEL +AF+ DKD Y+ L +MI GE T EE+++M+ A +D D G++ YE
Sbjct: 7 AEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGD-GQVNYE 65
Query: 149 YYINHIMK 156
++ +M
Sbjct: 66 EFVKMMMT 73
Score = 46.8 bits (112), Expect = 6e-08
Identities = 19/93 (20%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 8 HITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGN 67
H+ D E+++ +AF +FD N I E+ V+ LG T+ +++++I + G
Sbjct: 2 HMDTDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQ 61
Query: 68 IALSRFLPIVSGMISENRFQPASAEELLKAFRT 100
+ F+ ++ + L + F +
Sbjct: 62 VNYEEFVKMMMTVRGGG--GGNGWSRLRRKFSS 92
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 50.6 bits (121), Expect = 4e-09
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 92 EELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTA-VDQDTGRIPYE 148
+ + F D + + +E + + T E+ D + + V+ GR+ Y
Sbjct: 24 HAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAK-GRLKYP 80
Score = 35.5 bits (82), Expect = 0.001
Identities = 11/61 (18%), Positives = 16/61 (26%)
Query: 14 EKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRF 73
I F+ FD TI E + T+ + G + F
Sbjct: 23 YHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPDF 82
Query: 74 L 74
L
Sbjct: 83 L 83
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 50.8 bits (122), Expect = 6e-09
Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 7/101 (6%)
Query: 50 EADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYL 109
E + +++ + LP+++ + EL K F L + +
Sbjct: 2 EPTEKSMLLETTSTTKMETKYEDMLPVMAEKMDVE----EFVSELCKGFSLLADPERHLI 57
Query: 110 DKEYLTKLMIEEG-EPFTPEEIDEMMSTA-VDQDTGRIPYE 148
E L + G E + E+ M+ +D D G +
Sbjct: 58 TAESLRRNSGILGIEGMSKEDAQGMVREGDLDGD-GALNQT 97
Score = 33.1 bits (76), Expect = 0.013
Identities = 7/47 (14%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 12 DFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCP-TEADIQEII 57
+F ++ F + I + LG ++ D Q ++
Sbjct: 37 EFVSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMV 83
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 49.1 bits (118), Expect = 1e-08
Identities = 14/72 (19%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 90 SAEELLKAFRTLDKDNKSYLDKEYLTKLMIE---EGEPFTPEEIDEMMSTAVDQDT-GRI 145
S +++ KAF +D+D +++++ L + T E ++ D+D G I
Sbjct: 39 SLDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLA-DGDKDGDGMI 97
Query: 146 PYEYYINHIMKS 157
+ + ++K+
Sbjct: 98 GVDEFA-AMIKA 108
Score = 31.8 bits (73), Expect = 0.029
Identities = 9/54 (16%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 7 VHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRAL---GGCPTEADIQEII 57
V + + + AF + D + I+ E+ L+ T+A+ + +
Sbjct: 33 VGLASKSLDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFL 86
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 50.5 bits (121), Expect = 2e-08
Identities = 25/146 (17%), Positives = 45/146 (30%), Gaps = 19/146 (13%)
Query: 19 DAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEII-----VTCENPEFGNIALSRF 73
F D + ++ + AL P I E + P F L+ F
Sbjct: 33 HRFRALDRNKKGYLSRMDLQQ-IGALAVNPLGDRIIESFFPDGSQRVDFPGFVR-VLAHF 90
Query: 74 LPIVSGMISENRFQPASA-----EELLKAFRTLDKDNKSYLDKEYLTKLMIE-EGEPFTP 127
P+ + +L AF+ D D + + + +++ G T
Sbjct: 91 RPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTE 150
Query: 128 EE----IDEMMSTA-VDQDTGRIPYE 148
E+ D + A D D G + +
Sbjct: 151 EQLENIADRTVQEADEDGD-GAVSFV 175
Score = 33.6 bits (77), Expect = 0.016
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 11 NDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCP-TEADIQEII 57
N K+ AF ++D + I E+ VLR + G TE ++ I
Sbjct: 110 NSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIA 157
Score = 31.3 bits (71), Expect = 0.093
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 92 EELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEM 133
L FR LD++ K YL + L ++ P I+
Sbjct: 29 LRLHHRFRALDRNKKGYLSRMDLQQIGALAVNPLGDRIIESF 70
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 48.8 bits (117), Expect = 2e-08
Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 15/119 (12%)
Query: 43 ALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLD 102
++ + DI + C++P +F G+ SA ++ FR +D
Sbjct: 1 SITDILSAEDIAAALQECQDP--DTFEPQKFFQTS-GLSKM------SASQVKDIFRFID 51
Query: 103 KDNKSYLDKEYLTKLMI---EEGEPFTPEEIDEMMSTAVDQD-TGRIPYEYYINHIMKS 157
D YLD + L + + T E +M A D D G+I + + ++ S
Sbjct: 52 NDQSGYLDGDELKYFLQKFQSDARELTESETKSLMD-AADNDGDGKIGADEFQ-EMVHS 108
Score = 31.5 bits (72), Expect = 0.037
Identities = 8/54 (14%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 7 VHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCP---TEADIQEII 57
++ ++ D F D+ + +D E+ L+ TE++ + ++
Sbjct: 33 SGLSKMSASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLM 86
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 48.8 bits (117), Expect = 2e-08
Identities = 22/119 (18%), Positives = 51/119 (42%), Gaps = 15/119 (12%)
Query: 43 ALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLD 102
++ + DI++ I + +F +V + SA+++ K F LD
Sbjct: 1 SMTDLLSAEDIKKAIGAFTAA--DSFDHKKFFQMVG-------LKKKSADDVKKVFHILD 51
Query: 103 KDNKSYLDKEYLTKLM---IEEGEPFTPEEIDEMMSTAVDQD-TGRIPYEYYINHIMKS 157
KD +++++ L ++ + + +E +M+ A D+D G+I E + ++
Sbjct: 52 KDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMA-AGDKDGDGKIGVEEFS-TLVAE 108
Score = 30.7 bits (70), Expect = 0.067
Identities = 7/47 (14%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 14 EKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCP---TEADIQEII 57
+ F I D + I+ E+G++L+ + + + ++
Sbjct: 40 ADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLM 86
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 49.3 bits (118), Expect = 3e-08
Identities = 23/127 (18%), Positives = 51/127 (40%), Gaps = 12/127 (9%)
Query: 28 GNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQ 87
+ +D E+ L G T + + TC I ++ +G + N F+
Sbjct: 12 QDGEVDAEELQRCLTQSGINGTYSPFS--LETCR------IMIAMLDRDHTGKMGFNAFK 63
Query: 88 P--ASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRI 145
A+ + F T+D+D ++ L + + G +P+ + ++ ++ GRI
Sbjct: 64 ELWAALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRY-SKN-GRI 121
Query: 146 PYEYYIN 152
++ Y+
Sbjct: 122 FFDDYVA 128
Score = 39.7 bits (93), Expect = 1e-04
Identities = 14/102 (13%), Positives = 29/102 (28%), Gaps = 13/102 (12%)
Query: 5 EEVHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPE 64
+ F D G+ T++ E+ + +G + + I+ +
Sbjct: 60 NAFKELWAALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIV--KRYSK 117
Query: 65 FGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNK 106
G I + V+ + L FR D +
Sbjct: 118 NGRIFFDDY---VACCVKL--------RALTDFFRKRDHLQQ 148
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 48.0 bits (115), Expect = 3e-08
Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 15/119 (12%)
Query: 43 ALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLD 102
+L + +DI + C+ P + + +F I GM + S+ +L + FR LD
Sbjct: 1 SLTDILSPSDIAAALRDCQAP--DSFSPKKFFQIS-GMSKK------SSSQLKEIFRILD 51
Query: 103 KDNKSYLDKEYLTKLMIE---EGEPFTPEEIDEMMSTAVDQD-TGRIPYEYYINHIMKS 157
D +++++ L + T E ++ A D D G+I E + +++S
Sbjct: 52 NDQSGFIEEDELKYFLQRFESGARVLTASETKTFLA-AADHDGDGKIGAEEFQ-EMVQS 108
Score = 30.3 bits (69), Expect = 0.087
Identities = 7/54 (12%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 7 VHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCP---TEADIQEII 57
++ ++ + F I D+ + I+ E+ L+ T ++ + +
Sbjct: 33 SGMSKKSSSQLKEIFRILDNDQSGFIEEDELKYFLQRFESGARVLTASETKTFL 86
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 48.8 bits (116), Expect = 5e-08
Identities = 15/167 (8%), Positives = 42/167 (25%), Gaps = 24/167 (14%)
Query: 9 ITNDFEKKIADAFD-IFDHAGNKTIDCREVGTVLRALGGCPT---------------EAD 52
+ + ++KI FD D + +I + ++ E +
Sbjct: 2 LNDFQKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDE 61
Query: 53 IQEIIVTCENPEFGNIALSRFLPIVSGMI----SENRFQPASAEELLKAFRTLDKDNKSY 108
+++ + + ++ +L + I S + F+ +D
Sbjct: 62 WRDLKGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGI 121
Query: 109 LDKEYLTKLMIEEGEPFTPEEIDEMMSTA-VDQDTGRIPYEYYINHI 154
+D E ++ + + Y
Sbjct: 122 VDLEEFQNYCKNFQ--LQCADVPAVYNVITDGGK-VTFDLNRYKELY 165
Score = 28.7 bits (64), Expect = 0.73
Identities = 15/124 (12%), Positives = 35/124 (28%), Gaps = 12/124 (9%)
Query: 4 SEEVHITNDFEKKIADAFDIFDHAGNKTIDCRE-VGTVLRALGGCPTEADIQEIIVTCEN 62
++ + E + D D + + E + + + C + AD+
Sbjct: 49 ADYKSMQASLEDEWRDLKGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIP 108
Query: 63 PEFGNIALSRFLPIVSGMISENRFQPA------SAEELLKAFRTLDKDNKSYLDKEYLTK 116
F + +S G++ FQ ++ + + K D +
Sbjct: 109 FLFKGMDVSG-----DGIVDLEEFQNYCKNFQLQCADVPAVYNVITDGGKVTFDLNRYKE 163
Query: 117 LMIE 120
L
Sbjct: 164 LYYR 167
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 47.0 bits (112), Expect = 9e-08
Identities = 11/53 (20%), Positives = 21/53 (39%)
Query: 5 EEVHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEII 57
+ + + FD GN ID + +L LG T +++++I
Sbjct: 22 SSDEDLPSKLEGFKEKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLI 74
Score = 42.7 bits (101), Expect = 3e-06
Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 82 SENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQD 141
S + P+ E + + D + +D L +++ + G P T E+ +++ V
Sbjct: 22 SSDEDLPSKLEGFKEKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIG-EVSSG 80
Query: 142 -TGRIPYE 148
Y
Sbjct: 81 SGETFSYP 88
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 48.3 bits (115), Expect = 9e-08
Identities = 16/162 (9%), Positives = 40/162 (24%), Gaps = 24/162 (14%)
Query: 14 EKKIADAFD-IFDHAGNKTIDCREVGTVLRAL----GGCPTEADIQEIIVTCENPEF--- 65
KI F+ +D + I+ + ++ + E T +
Sbjct: 11 RNKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLR 70
Query: 66 --------GNIALSRFLPIVSGMI----SENRFQPASAEELLKAFRTLDKDNKSYLDKEY 113
+ +L + + + + + F D + +DK
Sbjct: 71 KYADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKHE 130
Query: 114 LTKLMIEEGEPFTPEEIDEMMSTA-VDQDTGRIPYEYYINHI 154
+ + + G + D T + E +
Sbjct: 131 YSTVYMSYG--IPKSDCDAAFDTLSDGGK-TMVTREIFARLW 169
Score = 31.3 bits (71), Expect = 0.084
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 13 FEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEII 57
K + FD+ D +G+ ID E TV + G ++D
Sbjct: 107 LTKYMNFMFDVNDTSGDNIIDKHEYSTVYMSYGI--PKSDCDAAF 149
Score = 27.5 bits (61), Expect = 1.8
Identities = 15/123 (12%), Positives = 33/123 (26%), Gaps = 12/123 (9%)
Query: 5 EEVHITNDFEKKIADAFDIFDHAGNKTIDCRE-VGTVLRALGGCPTEADIQEIIVTCENP 63
+ + D ++ + E + + + E + N
Sbjct: 54 KHNEARATLKLIWDGLRKYADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNF 113
Query: 64 EFGNIALSRFLPIVSGMISENRFQPA------SAEELLKAFRTLDKDNKSYLDKEYLTKL 117
F S +I ++ + + AF TL K+ + +E +L
Sbjct: 114 MFDVNDTSG-----DNIIDKHEYSTVYMSYGIPKSDCDAAFDTLSDGGKTMVTREIFARL 168
Query: 118 MIE 120
E
Sbjct: 169 WTE 171
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 46.0 bits (110), Expect = 1e-07
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 92 EELLKAFRTLDKDNKSYLDKEYLTKLMIEEGE-PFTPEEIDEMMSTAVDQD-TGRIPYEY 149
EE+L+AF+ D + +D + +M + GE P T E++E M D+D G I
Sbjct: 8 EEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMK-EADEDGNGVIDIPE 66
Query: 150 YINHIMKS 157
+++ ++K
Sbjct: 67 FMD-LIKK 73
Score = 41.0 bits (97), Expect = 9e-06
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 9 ITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCP-TEADIQEII 57
+ D E++I AF +FD G+ ID E +++ +G P T+A+++E +
Sbjct: 2 VRQDDEEEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAM 51
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 49.3 bits (118), Expect = 1e-07
Identities = 27/149 (18%), Positives = 52/149 (34%), Gaps = 21/149 (14%)
Query: 15 KKIADAFDIFDHAGNKTIDCREVGTVLRALGGCP--------------TEADIQEIIVTC 60
K++ + F D + +D E+ E I ++
Sbjct: 331 KQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLL 390
Query: 61 ENPEFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIE 120
+ G+I S F+ + I S E + +AF+ DKD + + L KL +
Sbjct: 391 DMDGSGSIEYSEFI---ASAIDRTILL--SRERMERAFKMFDKDGSGKISTKELFKLFSQ 445
Query: 121 EGEPFTPEEIDEMMSTAVDQDT-GRIPYE 148
EE++ ++ VD + G + +
Sbjct: 446 ADSSIQMEELESIIE-QVDNNKDGEVDFN 473
Score = 32.0 bits (73), Expect = 0.082
Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 16/95 (16%)
Query: 69 ALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLM---------- 118
A + ++ ++L + FR LD +N LD++ L +
Sbjct: 308 AEKKLAQAALLYMASKLTTLDETKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVD 367
Query: 119 ----IEEGEPFTPEEIDEMMSTAVDQD-TGRIPYE 148
I+ ++ID +M +D D +G I Y
Sbjct: 368 SNSLIQNEGSTIEDQIDSLMP-LLDMDGSGSIEYS 401
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 47.9 bits (114), Expect = 2e-07
Identities = 15/139 (10%), Positives = 35/139 (25%), Gaps = 12/139 (8%)
Query: 14 EKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRF 73
+I F D + T++ E+ G + ++ + G+I+ F
Sbjct: 50 YTRIYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNGHISFYEF 109
Query: 74 LPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEM 133
+ + M E F + L+ + + + G +
Sbjct: 110 MAMYKFM-----------ELAYNLFVMNARARSGTLEPHEILPALQQLGFYINQRTSLLL 158
Query: 134 MSTAVDQDTGRIPYEYYIN 152
+I
Sbjct: 159 HRLFARGM-AFCDLNCWIA 176
Score = 40.5 bits (95), Expect = 6e-05
Identities = 13/78 (16%), Positives = 23/78 (29%), Gaps = 8/78 (10%)
Query: 86 FQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQD-TGR 144
+ + F +D+D L+ L G +P+ MM D D G
Sbjct: 45 IPLDQYTRIYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMR-IFDTDFNGH 103
Query: 145 IPYE------YYINHIMK 156
I + ++
Sbjct: 104 ISFYEFMAMYKFMELAYN 121
Score = 31.7 bits (72), Expect = 0.074
Identities = 14/115 (12%), Positives = 37/115 (32%), Gaps = 13/115 (11%)
Query: 1 MSLSEEVHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTC 60
+S E + + F + + F + A + T++ E+ L+ L G ++
Sbjct: 104 ISFYEFMAMYK-FMELAYNLFVMNARARSGTLEPHEILPALQQL-GFYINQRTSLLLHRL 161
Query: 61 ENPEFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLT 115
L+ ++ I + + A++ + + K +
Sbjct: 162 FARGMAFCDLNCWIAICAFA-----------AQTRSAYQMIFMNPYYGPMKPFNP 205
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: a.39.1.5
Length = 67
Score = 44.8 bits (107), Expect = 2e-07
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 93 ELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTA-VDQDTGRIPYEYYI 151
+ F DK+ L + ++ + FT E+I + VD + G + + +
Sbjct: 2 SAKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGN-GELNADEFT 60
Query: 152 NHIMKS 157
+ I K
Sbjct: 61 SCIEKM 66
Score = 42.9 bits (102), Expect = 1e-06
Identities = 9/41 (21%), Positives = 14/41 (34%)
Query: 17 IADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEII 57
F+ FD + + E V A T+ DI +
Sbjct: 3 AKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFF 43
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 44.8 bits (107), Expect = 4e-07
Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 13/59 (22%)
Query: 12 DF-EKKIAD------------AFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEII 57
D +K +A+ F + D + TI E+ L+ +G E++I++++
Sbjct: 7 DDDDKHMAERLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLM 65
Score = 43.3 bits (103), Expect = 1e-06
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 92 EELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQD-TGRIPYE 148
L + F+ +D DN + + L + G EI ++M A D D +G I Y
Sbjct: 23 GGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMD-AADIDKSGTIDYG 79
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 44.7 bits (106), Expect = 4e-07
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 4/64 (6%)
Query: 86 FQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQD-TGR 144
L F D + L++E L E P + + + +D D G
Sbjct: 21 GDGEELARLRSVFAACDANRSGRLEREEFRALCTELR--VRPADAEAVFQ-RLDADRDGA 77
Query: 145 IPYE 148
I ++
Sbjct: 78 ITFQ 81
Score = 31.9 bits (73), Expect = 0.018
Identities = 6/44 (13%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
Query: 14 EKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEII 57
++ F D + ++ E + L AD + +
Sbjct: 26 LARLRSVFAACDANRSGRLEREEFRALCTELR--VRPADAEAVF 67
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 45.7 bits (108), Expect = 5e-07
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 2/74 (2%)
Query: 76 IVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMS 135
+ S + P+ E + D + +D L +++ + G P T E+ ++
Sbjct: 32 LDDPKYSNDEDLPSKLEAFKVKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKRLIR 91
Query: 136 TAVDQD-TGRIPYE 148
V Y
Sbjct: 92 -EVSSGSEETFSYS 104
Score = 40.7 bits (95), Expect = 3e-05
Identities = 11/53 (20%), Positives = 19/53 (35%)
Query: 5 EEVHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEII 57
+ + FD GN ID + +L LG T +++ +I
Sbjct: 38 SNDEDLPSKLEAFKVKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKRLI 90
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 45.8 bits (109), Expect = 1e-06
Identities = 30/151 (19%), Positives = 60/151 (39%), Gaps = 18/151 (11%)
Query: 8 HITNDFE-KKIADAFDIFDHAGNKTIDCREVGTVLRALGG--------CPTEADIQEIIV 58
+T+ E K++ D F D G+ +D +E+ L G E+++ I+
Sbjct: 338 KLTSQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILG 397
Query: 59 TCENPEFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLM 118
+ G I S F+ + + S ++L AF+ D+D + + L +
Sbjct: 398 AADFDRNGYIDYSEFV---TVAMDRKSLL--SKDKLESAFQKFDQDGNGKISVDELASVF 452
Query: 119 IEEGEPFTPEEIDEMMSTAVDQDT-GRIPYE 148
+ + EM+S +D + G + +E
Sbjct: 453 GLDH--LESKTWKEMISG-IDSNNDGDVDFE 480
Score = 32.0 bits (73), Expect = 0.078
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 10/89 (11%)
Query: 69 ALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLD----KEYLTKLMIEEGEP 124
+ ++ +EL FR +DK+ LD + +KL EE
Sbjct: 323 NSQKLAQAALLYMASKLTSQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAV 382
Query: 125 FTP----EEIDEMMSTAVDQD-TGRIPYE 148
F E+D ++ A D D G I Y
Sbjct: 383 FDLPQIESEVDAILG-AADFDRNGYIDYS 410
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 42.9 bits (102), Expect = 2e-06
Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 91 AEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQD-TGRIPYEY 149
A+++ + F+ D + + LT + G + +E+ MM+ +D D G I +
Sbjct: 2 ADDMERIFKRFDTNGDGKISLSELTDALRTLGST-SADEVQRMMA-EIDTDGDGFIDFNE 59
Query: 150 YINHIMKSEE 159
+I+ +
Sbjct: 60 FIS-FCNANP 68
Score = 41.0 bits (97), Expect = 7e-06
Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 8/85 (9%)
Query: 14 EKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRF 73
+ F FD G+ I E+ LR LG + ++Q ++ + G I + F
Sbjct: 2 ADDMERIFKRFDTNGDGKISLSELTDALRTLGSTSAD-EVQRMMAEIDTDGDGFIDFNEF 60
Query: 74 LPIVSGMISENRFQPASAEELLKAF 98
+ + P +++ K F
Sbjct: 61 ISFCNA-------NPGLMKDVAKVF 78
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 42.6 bits (101), Expect = 2e-06
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 90 SAEELLKAFRTLDKD--NKSYLDKEYLTKLMIEEGEPFTP--EEIDEMMSTA-VDQDTGR 144
S EE+ AF + + + KE L +M G +DEM+ + D G
Sbjct: 3 SPEEIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGD-GE 61
Query: 145 IPYEYYINHIMK 156
+ +E ++ +MK
Sbjct: 62 VSFEEFLV-MMK 72
Score = 31.8 bits (73), Expect = 0.017
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 14 EKKIADAFDIFDHA-GNK-TIDCREVGTVLRALGG--CPTEADIQEII 57
++I AF++F G+ I E+ V++ LG + + E+I
Sbjct: 4 PEEIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMI 51
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 44.8 bits (106), Expect = 2e-06
Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 12/127 (9%)
Query: 28 GNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQ 87
+ ID E+ L G + TC + +S +SG + N F+
Sbjct: 45 QDGQIDADELQRCLTQSGIAGGYKPFN--LETCR------LMVSMLDRDMSGTMGFNEFK 96
Query: 88 P--ASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRI 145
A + F + D D +D + L K + G +P+ ++ + + G+I
Sbjct: 97 ELWAVLNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRY-STN-GKI 154
Query: 146 PYEYYIN 152
++ YI
Sbjct: 155 TFDDYIA 161
Score = 37.4 bits (87), Expect = 6e-04
Identities = 15/95 (15%), Positives = 28/95 (29%), Gaps = 13/95 (13%)
Query: 12 DFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALS 71
F FD + T+D +E+ L +G + + I G I
Sbjct: 100 AVLNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIA--KRYSTNGKITFD 157
Query: 72 RFLPIVSGMISENRFQPASAEELLKAFRTLDKDNK 106
+ ++ + L +FR D +
Sbjct: 158 DY---IACCV--------KLRALTDSFRRRDTAQQ 181
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer,
domain-swapping, EF-hand; 1.75A {Chenopodium album}
SCOP: a.39.1.10 PDB: 1h4b_A
Length = 86
Score = 42.6 bits (101), Expect = 2e-06
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 8 HITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEII 57
T F FD G+ I E+G L+ LG T +++ ++
Sbjct: 4 EDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGS-VTPDEVRRMM 52
Score = 40.7 bits (96), Expect = 1e-05
Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 92 EELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQD-TGRIPYEYY 150
+ + F+ D + + L + G TP+E+ MM+ +D D G I ++ +
Sbjct: 11 ADRERIFKRFDTNGDGKISSSELGDALKTLGSV-TPDEVRRMMA-EIDTDGDGFISFDEF 68
Query: 151 INHIMKSE 158
+ ++
Sbjct: 69 TD-FARAN 75
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 45.1 bits (107), Expect = 2e-06
Identities = 29/143 (20%), Positives = 54/143 (37%), Gaps = 17/143 (11%)
Query: 15 KKIADAFDIFDHAGNKTIDCREVGTVLRALGGCP--------TEADIQEIIVTCENPEFG 66
K++ D F D G+ +D +E+ L E ++ I+ + + G
Sbjct: 355 KELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKNG 414
Query: 67 NIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFT 126
I S F+ S + + S E L +AF D D + KE L L +
Sbjct: 415 YIEYSEFI---SVCMDKQILF--SEERLRRAFNLFDTDKSGKITKEELANLFGLTS--IS 467
Query: 127 PEEIDEMMSTAVDQDT-GRIPYE 148
+ ++++ DQ+ I ++
Sbjct: 468 EKTWNDVLGE-ADQNKDNMIDFD 489
Score = 30.8 bits (70), Expect = 0.15
Identities = 20/89 (22%), Positives = 29/89 (32%), Gaps = 10/89 (11%)
Query: 69 ALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGE----- 123
+ I +EL F+ LDK+ LDK+ L +
Sbjct: 332 GSQKLAQAAILFIGSKLTTLEERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNEL 391
Query: 124 ---PFTPEEIDEMMSTAVDQD-TGRIPYE 148
EE+D ++ VD D G I Y
Sbjct: 392 GELKNVEEEVDNILK-EVDFDKNGYIEYS 419
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB:
1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 43.9 bits (104), Expect = 3e-06
Identities = 15/151 (9%), Positives = 43/151 (28%), Gaps = 12/151 (7%)
Query: 14 EKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEI-IVTCENPEFGNIALSR 72
++ F + + E+ +L + + I TC ++
Sbjct: 3 VRQFRRLFAQLAG-DDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCR------SMVAV 55
Query: 73 FLPIVSGMISENRFQPASA--EELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEI 130
+G + F+ ++ ++ D D + L G
Sbjct: 56 MDSDTTGKLGFEEFKYLWNNIKKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHLY 115
Query: 131 DEMMSTAVDQDTGRIPYEYYINHIMKSEERL 161
++ D+ G + ++ +I + + +
Sbjct: 116 SMIIRRYSDEG-GNMDFDNFI-SCLVRLDAM 144
Score = 36.2 bits (84), Expect = 0.001
Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 12/95 (12%)
Query: 12 DFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALS 71
+ KK + FD + TI E+ A G E II + GN+
Sbjct: 74 NNIKKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHLYSMIIRRYSDEG-GNMDFD 132
Query: 72 RFLPIVSGMISENRFQPASAEELLKAFRTLDKDNK 106
F +S ++ + + +AF++LDKD
Sbjct: 133 NF---ISCLVRL--------DAMFRAFKSLDKDGT 156
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.2 bits (106), Expect = 3e-06
Identities = 26/173 (15%), Positives = 48/173 (27%), Gaps = 42/173 (24%)
Query: 2 SLSEEVHITNDFEKKIADAFDIF-DHAGNKTIDCREVGTVLRAL---------GGCPTEA 51
++ +V ++ + F IF + N C TVL L
Sbjct: 165 WVALDV--CLSYKVQCKMDFKIFWLNLKN----CNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 52 DIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQPA-------SAEELLKAF----RT 100
I + + L R L ++ + AF +
Sbjct: 219 HSSNIKLRIHS---IQAELRRLL-------KSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268
Query: 101 L----DKDNKSYLDKEYLTKL-MIEEGEPFTPEEIDEMMSTAVDQDTGRIPYE 148
L K +L T + + TP+E+ ++ +D +P E
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Score = 36.4 bits (83), Expect = 0.003
Identities = 22/140 (15%), Positives = 51/140 (36%), Gaps = 35/140 (25%)
Query: 10 TNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEII------------ 57
T + + + D +F+ A DC++V + +++ ++ +I II
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI---LSKEEIDHIIMSKDAVSGTLRL 67
Query: 58 --VTCENPEFGNIALSRFLP---------IVSGMISENRFQPASAEELLKAFRTLDKDNK 106
E + +F+ ++S + +E R QP+ + R ++
Sbjct: 68 FWTLLSKQE--EMV-QKFVEEVLRINYKFLMSPIKTEQR-QPSMMTRMYIEQR-----DR 118
Query: 107 SYLDKEYLTKLMIEEGEPFT 126
Y D + K + +P+
Sbjct: 119 LYNDNQVFAKYNVSRLQPYL 138
Score = 29.1 bits (64), Expect = 0.75
Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 18/76 (23%)
Query: 89 ASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRIPYE 148
E + FR + +LD +L + + + + +++T +
Sbjct: 484 IEHPERMTLFRMV------FLDFRFLEQKIRHDSTAWNAS--GSILNTLQQ-------LK 528
Query: 149 YYINHIMKSE---ERL 161
+Y +I ++ ERL
Sbjct: 529 FYKPYICDNDPKYERL 544
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 43.1 bits (102), Expect = 6e-06
Identities = 25/127 (19%), Positives = 45/127 (35%), Gaps = 12/127 (9%)
Query: 28 GNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGMISENRFQ 87
+ ID E+ L G + TC + +S +SG + N F+
Sbjct: 14 QDGQIDADELQRCLTQSGIAGGYKPFN--LETCR------LMVSMLDRDMSGTMGFNEFK 65
Query: 88 P--ASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRI 145
A + F + D D +D + L K + G P+ ++ + G+I
Sbjct: 66 ELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKR-YSTS-GKI 123
Query: 146 PYEYYIN 152
++ YI
Sbjct: 124 TFDDYIA 130
Score = 39.7 bits (93), Expect = 9e-05
Identities = 15/95 (15%), Positives = 27/95 (28%), Gaps = 13/95 (13%)
Query: 12 DFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALS 71
F FD + T+D +E+ L +G + I G I
Sbjct: 69 AVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIA--KRYSTSGKITFD 126
Query: 72 RFLPIVSGMISENRFQPASAEELLKAFRTLDKDNK 106
+ ++ + L +FR D +
Sbjct: 127 DY---IACCV--------KLRALTDSFRRRDSAQQ 150
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 43.5 bits (103), Expect = 9e-06
Identities = 29/154 (18%), Positives = 57/154 (37%), Gaps = 21/154 (13%)
Query: 8 HITNDFE-KKIADAFDIFDHAGNKTIDCREVGTVLR-----------ALGGCPTEADIQE 55
+T+ E K++ F D G+ +D E+ + L E ++ +
Sbjct: 327 KLTSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQ 386
Query: 56 IIVTCENPEFGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLT 115
++ + + G I S F+ + + S E L +AFR D DN + L
Sbjct: 387 VLDAVDFDKNGYIEYSEFV---TVAMDRKTLL--SRERLERAFRMFDSDNSGKISSTELA 441
Query: 116 KLMIEEGEPFTPEEIDEMMSTAVDQDT-GRIPYE 148
+ E ++S VD++ G + ++
Sbjct: 442 TIF--GVSDVDSETWKSVLSE-VDKNNDGEVDFD 472
Score = 31.2 bits (71), Expect = 0.13
Identities = 16/92 (17%), Positives = 27/92 (29%), Gaps = 13/92 (14%)
Query: 69 ALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKE-----------YLTKL 117
+ + +EL F +DK+ LD+ +
Sbjct: 312 GTQKLAQAALLYMGSKLTSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQD 371
Query: 118 MIEEGEPFTPEEIDEMMSTAVDQD-TGRIPYE 148
E+D+++ AVD D G I Y
Sbjct: 372 ASMLDASAVEHEVDQVLD-AVDFDKNGYIEYS 402
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 40.9 bits (96), Expect = 4e-05
Identities = 22/179 (12%), Positives = 58/179 (32%), Gaps = 27/179 (15%)
Query: 1 MSLSEEVHITNDFEKKIADAFDIF-DHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVT 59
E + ++ + + F + + T+ E + ++ +
Sbjct: 8 EEAEENGAVGAADAAQLQEWYKKFLEECPSGTLFMHEFKRFFKVPDNEEATQYVEAMFRA 67
Query: 60 CENPEFGNIALSRFLPIVSGMISENRFQPASAEELLK-AFRTLDKDNKSYLDKEYLTKLM 118
+ I ++ ++ + E LK F+ DKD +D++ L ++
Sbjct: 68 FDTNGDNTIDFLEYVAALN------LVLRGTLEHKLKWTFKIYDKDRNGCIDRQELLDIV 121
Query: 119 I----------------EEGEPFTPEEI-DEMMSTA-VDQDTGRIPYEYYINHIMKSEE 159
++G+ TPEE+ D + + D G++ ++ + +
Sbjct: 122 ESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDENGD-GQLSLNEFVEGARRDKW 179
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 41.4 bits (96), Expect = 5e-05
Identities = 25/138 (18%), Positives = 52/138 (37%), Gaps = 15/138 (10%)
Query: 15 KKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFL 74
+ +F+ FD +DC + L ++G EA+ I+ + G + F
Sbjct: 725 NEFRASFNHFDRKKTGMMDCEDFRACLISMGYNMGEAEFARIMSIVDPNRMGVVTFQAF- 783
Query: 75 PIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEID--- 131
+ M E +A++++ +F+ L DK Y+T + P++ +
Sbjct: 784 --IDFMSRETADT-DTADQVMASFKILAG------DKNYITVDELRRE--LPPDQAEYCI 832
Query: 132 EMMSTAVDQDTGRIPYEY 149
M+ +D +Y
Sbjct: 833 ARMAPYNGRDAVPGALDY 850
Score = 33.7 bits (76), Expect = 0.022
Identities = 12/61 (19%), Positives = 22/61 (36%)
Query: 92 EELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRIPYEYYI 151
E +F D+ +D E +I G E +MS G + ++ +I
Sbjct: 725 NEFRASFNHFDRKKTGMMDCEDFRACLISMGYNMGEAEFARIMSIVDPNRMGVVTFQAFI 784
Query: 152 N 152
+
Sbjct: 785 D 785
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 38.8 bits (91), Expect = 6e-05
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 8/64 (12%)
Query: 92 EELLKAFRTLDKDNKSYLDKEYLTKLMIEEG------EPFTPEEIDEMMSTA-VDQDTGR 144
EL AF+ LD + Y+ L M+ + E +++ A + D G+
Sbjct: 7 AELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSD-GK 65
Query: 145 IPYE 148
I E
Sbjct: 66 ISKE 69
Score = 37.2 bits (87), Expect = 2e-04
Identities = 8/55 (14%), Positives = 19/55 (34%), Gaps = 6/55 (10%)
Query: 9 ITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCP------TEADIQEII 57
+ + ++ AF D G+ + E+ T + L + ++I
Sbjct: 1 MACKVKAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLI 55
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 40.1 bits (94), Expect = 8e-05
Identities = 28/149 (18%), Positives = 47/149 (31%), Gaps = 18/149 (12%)
Query: 15 KKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEII-----VTCENPEFGNIA 69
++ F D N T+ + + L P I F
Sbjct: 29 TRLYSRFTSLDKGENGTLSREDFQRI-PELAINPLGDRIINAFFSEGEDQVNFRGF-MRT 86
Query: 70 LSRFLPIVSGMISENRFQPASA----EELLKAFRTLDKDNKSYLDKEYLTKLMIEE-GEP 124
L+ F PI S++ P +L AFR D D + ++ L +++ G
Sbjct: 87 LAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVN 146
Query: 125 FTPEE----IDEMMSTA-VDQDTGRIPYE 148
+ E+ D + A D D I +
Sbjct: 147 ISDEQLGSIADRTIQEADQDGD-SAISFT 174
Score = 29.4 bits (66), Expect = 0.45
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 11 NDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCP-TEADIQEII 57
N K+ AF ++D + I E+ VLR + G ++ + I
Sbjct: 109 NSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIA 156
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 4e-04
Identities = 28/151 (18%), Positives = 46/151 (30%), Gaps = 38/151 (25%)
Query: 12 DFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALS 71
D K A D+++ A N D G I +I++ NP I
Sbjct: 1634 DLYKTSKAAQDVWNRADNHFKD---------TYGF-----SILDIVI--NNPVNLTI--- 1674
Query: 72 RFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEID 131
F I EN + E ++ +K K ++ E+ T +
Sbjct: 1675 HFGGEKGKRIREN-YSAMIFETIVDGKLKTEKIFKE-IN-EHSTSYTFRS-----EKG-- 1724
Query: 132 EMMSTAVDQDTGRIP----YEYYINHIMKSE 158
+ +T Q P E +KS+
Sbjct: 1725 LLSATQFTQ-----PALTLMEKAAFEDLKSK 1750
Score = 35.0 bits (80), Expect = 0.008
Identities = 28/160 (17%), Positives = 50/160 (31%), Gaps = 46/160 (28%)
Query: 6 EVHI--TNDF---EKKI-------ADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADI 53
+ ++ TN K++ A + +G + LR P+ D
Sbjct: 350 QDYVNKTNSHLPAGKQVEISLVNGAKNLVV---SGP-PQSLYGLNLTLRKAK-APSGLDQ 404
Query: 54 QEIIVTCENPEFGNIALSRFLPIVSGMISENRFQP------ASAEELLKAFRTLDKDNKS 107
I + +F N RFLP+ P A +L+ L K+N S
Sbjct: 405 SRIPFSERKLKFSN----RFLPV---------ASPFHSHLLVPASDLINK--DLVKNNVS 449
Query: 108 YLDKE-----YLT---KLMIEEGEPFTPEEIDEMMSTAVD 139
+ K+ Y T + + +D ++ V
Sbjct: 450 FNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK 489
Score = 27.3 bits (60), Expect = 2.6
Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 13/59 (22%)
Query: 72 RF---LPIVS-GMISENRFQPASAEELLKAF-----RTLDKDNKSYLDKEYLTKLMIEE 121
+F LP + G +++ +P + EL+ F ++ D+ + L + E
Sbjct: 36 QFNKILPEPTEGFAADD--EPTTPAELVGKFLGYVSSLVEPSKVGQFDQ--VLNLCLTE 90
Score = 27.3 bits (60), Expect = 3.1
Identities = 37/184 (20%), Positives = 59/184 (32%), Gaps = 42/184 (22%)
Query: 3 LSEEVHITNDFEKKIADAFDIFD--HAGNKTIDCREVGTVLRALGGCPTEADIQ--EIIV 58
LSE + T D EK +I + + T D +L CP IQ +V
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEWLENPSNTPD---KDYLLSIPISCPLIGVIQLAHYVV 251
Query: 59 TCE----NP-EFGNI---ALSRFLPIVSGMI-----SENRFQPASAEELLKAF----RTL 101
T + P E + A +V+ + S F + + + F R
Sbjct: 252 TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY 311
Query: 102 DKDNKSYLDKEYLTK-LMIEEGEPFTPEEIDEMMS----------TAVDQDTGRIPYEYY 150
+ + L L L EG P +P M+S V++ +P
Sbjct: 312 EAYPNTSLPPSILEDSLENNEGVP-SP-----MLSISNLTQEQVQDYVNKTNSHLPAGKQ 365
Query: 151 INHI 154
+ I
Sbjct: 366 V-EI 368
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 38.1 bits (89), Expect = 6e-04
Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 9/67 (13%)
Query: 92 EELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDT-GRIPYEYY 150
+L L D + + +T+ + G P T + + T V G+
Sbjct: 382 TTILNPHIHLMGDESACIAYIRITQYLDAGGIPRTAQSEE----TRVWHRRDGKWQIV-- 435
Query: 151 INHIMKS 157
H +S
Sbjct: 436 --HFHRS 440
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 34.1 bits (79), Expect = 0.002
Identities = 7/56 (12%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 94 LLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQD-TGRIPYE 148
F+ +D + + E + + ++ + + + ++D D G I
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFK-SIDADGNGEIDQN 56
Score = 32.5 bits (75), Expect = 0.008
Identities = 8/41 (19%), Positives = 12/41 (29%)
Query: 17 IADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEII 57
F D G+ + EV + E +Q I
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIF 42
Score = 24.1 bits (53), Expect = 8.6
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 14 EKKIADAFDIFDHAGNKTIDCREVGTVLRAL 44
E+ + F D GN ID E ++
Sbjct: 35 EQLLQLIFKSIDADGNGEIDQNEFAKFYGSI 65
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 32.6 bits (74), Expect = 0.025
Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 14/83 (16%)
Query: 79 GMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMI--------EEGEPFTPEE- 129
G+I++ + + E L F+ D D + LD L+ + E+ + +E
Sbjct: 55 GVINKPEAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDEL 114
Query: 130 ---IDEMMSTA-VDQDTGRIPYE 148
ID ++ + D G I Y
Sbjct: 115 INIIDGVLRDDDKNND-GYIDYA 136
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 32.1 bits (73), Expect = 0.050
Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 8/75 (10%)
Query: 92 EELLKAFRTLDKDNKSYLDKEYLTKL------MIEEGEPFTPEEIDEMMSTA-VDQDTGR 144
++L F+ D D +DK L + + + E I+ + ++ D G
Sbjct: 93 QKLKWYFKLYDADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFINLVFHKIDINND-GE 151
Query: 145 IPYEYYINHIMKSEE 159
+ E +IN + K ++
Sbjct: 152 LTLEEFINGMAKDQD 166
Score = 27.1 bits (60), Expect = 2.2
Identities = 10/90 (11%), Positives = 23/90 (25%), Gaps = 8/90 (8%)
Query: 78 SGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTA 137
S + + F L+ +G + + +
Sbjct: 8 SIAGDQKAVPTQETHVWYRTFMMEYPSGL--QTLHEFKTLLGLQGLNQKANKHIDQVYNT 65
Query: 138 VDQD-TGRIPYEYYIN-----HIMKSEERL 161
D + G + + +I K E++L
Sbjct: 66 FDTNKDGFVDFLEFIAAVNLIMQEKMEQKL 95
Score = 25.9 bits (57), Expect = 6.0
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 12 DFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGC--PTEADIQEII 57
E+K+ F ++D GN +ID E+ + A+ +E I
Sbjct: 90 KMEQKLKWYFKLYDADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFI 137
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 29.7 bits (67), Expect = 0.25
Identities = 9/45 (20%), Positives = 19/45 (42%)
Query: 11 NDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQE 55
+ K AF IFD + T++ ++ ++ L G + +
Sbjct: 94 ATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSA 138
Score = 27.4 bits (61), Expect = 1.5
Identities = 28/157 (17%), Positives = 61/157 (38%), Gaps = 18/157 (11%)
Query: 13 FEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSR 72
F + + + + + ++ + L L P + I + +P +++
Sbjct: 26 FCELLPQEQRSVESSLRAQVPFEQILS-LPELKANPFKERICRVF--STSPAKDSLSFED 82
Query: 73 FLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLM-----IEEGEPFTP 127
FL ++S + AFR D D+ L++E L++L+ E +
Sbjct: 83 FLDLLSVFSDTATPD----IKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSA 138
Query: 128 EE----IDEMMSTA-VDQDTGRIPYEYYINHIMKSEE 159
E ID ++ + +D+D G I + + I +S +
Sbjct: 139 SEMKQLIDNILEESDIDRD-GTINLSEFQHVISRSPD 174
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 29.7 bits (67), Expect = 0.27
Identities = 23/147 (15%), Positives = 43/147 (29%), Gaps = 50/147 (34%)
Query: 21 FDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGM 80
F+ FD + ID E V+ +
Sbjct: 58 FETFDFNKDGYIDFME---------------------------------------YVAAL 78
Query: 81 ISENRFQPASAEELLK-AFRTLDKDNKSYLDKEYLTKLMI------EEGEPFTPEEIDEM 133
+ ++ L+ F+ D D +D+ L ++ E T EE M
Sbjct: 79 ---SLVLKGKVDQKLRWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTNM 135
Query: 134 MSTAVDQD-TGRIPYEYYINHIMKSEE 159
+ +D + G + E ++ + K E
Sbjct: 136 VFDKIDINGDGELSLEEFMEGVQKDEV 162
Score = 26.7 bits (59), Expect = 3.2
Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 12 DFEKKIADAFDIFDHAGNKTIDCREVGTVLRALG---GCPTEADIQEII 57
++K+ F ++D GN ID E+ +++A+ C +E
Sbjct: 85 KVDQKLRWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFT 133
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 29.8 bits (67), Expect = 0.31
Identities = 21/161 (13%), Positives = 45/161 (27%), Gaps = 21/161 (13%)
Query: 14 EKKIADAFDIF-DHAGNKTIDCREVGTVLRALGGCPTEADIQE-IIVTCENPEFGNIALS 71
++I F + + + + + + D + + G I
Sbjct: 24 RREIQQWHKGFLRDCPSGQLAREDFVKIYKQFFPFGSPEDFANHLFTVFDKDNNGFIHFE 83
Query: 72 RFLPIVSGMISENRFQPASAEELLK-AFRTLDKDNKSYLDKE----YLTKLMIEEGEPFT 126
F+ ++S + EE L AF D ++ Y+ + + + G T
Sbjct: 84 EFITVLS------TTSRGTLEEKLSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVT 137
Query: 127 PEEIDEMMSTAVDQ-----DT---GRIPYEYYINHIMKSEE 159
E + V + D G I + +
Sbjct: 138 LNEDEATPEMRVKKIFKLMDKNEDGYITLDEFREGSKVDPS 178
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 29.8 bits (67), Expect = 0.31
Identities = 28/157 (17%), Positives = 61/157 (38%), Gaps = 18/157 (11%)
Query: 13 FEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSR 72
F + + + + + ++ + L L P + I + +P +++
Sbjct: 57 FCELLPQEQRSVESSLRAQVPFEQILS-LPELKANPFKERICRVF--STSPAKDSLSFED 113
Query: 73 FLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLM-----IEEGEPFTP 127
FL ++S + AFR D D+ L++E L++L+ E +
Sbjct: 114 FLDLLSVFSDTATPD----IKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSA 169
Query: 128 EE----IDEMMSTA-VDQDTGRIPYEYYINHIMKSEE 159
E ID ++ + +D+D G I + + I +S +
Sbjct: 170 SEMKQLIDNILEESDIDRD-GTINLSEFQHVISRSPD 205
Score = 29.4 bits (66), Expect = 0.38
Identities = 11/55 (20%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 8 HITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCP-----TEADIQEII 57
T + K AF IFD + T++ ++ ++ L G + ++++++I
Sbjct: 122 SDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLI 176
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 29.8 bits (67), Expect = 0.34
Identities = 11/77 (14%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 92 EELLKAFRTLDKDNKSYLDKEYLTKLMI----EEGEPFTPEE----IDEMMSTA-VDQDT 142
+++ +F+ D + +++++ + ++++ E G ID+ A D
Sbjct: 122 DKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHD- 180
Query: 143 GRIPYEYYINHIMKSEE 159
G+I E + + +++
Sbjct: 181 GKIDKEEWRSLVLRHPS 197
Score = 27.5 bits (61), Expect = 1.6
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 12 DFEKKIADAFDIFDHAGNKTIDCREVGTVLRAL----GGCPTEADIQEII 57
+ KI +F ++D I+ +EV ++ A G + I++II
Sbjct: 119 PIDDKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDII 168
>3a8r_A Putative uncharacterized protein; EF-hand, membrane,
oxidoreductase, transmembrane, calcium BI protein; 2.40A
{Oryza sativa japonica group}
Length = 179
Score = 29.3 bits (65), Expect = 0.41
Identities = 17/113 (15%), Positives = 39/113 (34%), Gaps = 3/113 (2%)
Query: 11 NDFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIAL 70
++F ++ D+ + + E+ L + ++ + G +
Sbjct: 58 DEFAVQMFDSLARKRGIVKQVLTKDELKDFYEQLTDQGFDNRLRTFFDMVDKNADGRLTA 117
Query: 71 SRFLPIVSGMISENRFQPAS--AEELLKA-FRTLDKDNKSYLDKEYLTKLMIE 120
I++ S N+ A+E LD N Y++ E L L+++
Sbjct: 118 EEVKEIIALSASANKLSKIKERADEYTALIMEELDPTNLGYIEMEDLEALLLQ 170
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 28.6 bits (64), Expect = 0.66
Identities = 14/77 (18%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
Query: 92 EELLKAFRTLDKDNKSYLDKEYLT---KLMIEEGEPFTPEE-----IDEMMSTA-VDQDT 142
E++ AF+ D ++++E L ++ E E E+ +D+ A D
Sbjct: 111 EKVKFAFKLYDLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKND- 169
Query: 143 GRIPYEYYINHIMKSEE 159
G+I + + + + +
Sbjct: 170 GKIDIDEWKDFVSLNPS 186
Score = 27.4 bits (61), Expect = 1.9
Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 12 DFEKKIADAFDIFDHAGNKTIDCREVGTVLRALGG----CPTEADIQEII 57
+K+ AF ++D I+ E+ ++ AL +E I+ ++
Sbjct: 108 PVHEKVKFAFKLYDLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMV 157
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA
binding protein; HET: CIT; 2.20A {Gallus gallus} PDB:
3b0d_T* 3vh5_T 3vh6_T
Length = 111
Score = 28.0 bits (62), Expect = 0.76
Identities = 10/45 (22%), Positives = 22/45 (48%)
Query: 13 FEKKIADAFDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEII 57
F++ +D HAG KT++ +V ++R G + + ++
Sbjct: 41 FKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTDKMPLHVLV 85
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif,
liddle syndrome, proline-rich, ligase; NMR {Rattus
norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*
Length = 50
Score = 26.1 bits (58), Expect = 1.1
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 13/42 (30%)
Query: 122 GEPFTPEEID------EMMSTAVDQDTGRIPYEYYINHIMKS 157
G P ++ E + GR+ ++INH +K
Sbjct: 1 GSPVDSNDLGPLPPGWEERTHT----DGRV---FFINHNIKK 35
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 27.0 bits (60), Expect = 1.4
Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 90 SAEELLK---AFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRI 145
S E K F DKD ++ + ++ ++ G P + + S +D G++
Sbjct: 5 SPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLP--STLLAHIWSLCDTKDCGKL 61
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 27.6 bits (61), Expect = 1.6
Identities = 17/101 (16%), Positives = 35/101 (34%), Gaps = 9/101 (8%)
Query: 21 FDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGM 80
F FD + T+D +E L T ++ + G I+ + L IV +
Sbjct: 77 FRSFDSNLDGTLDFKEYVIALHMTTAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVMAI 136
Query: 81 ISENRFQPA--------SAEELL-KAFRTLDKDNKSYLDKE 112
+ + E+ K ++ K++ L ++
Sbjct: 137 FKMITPEDVKLLPDDENTPEKRAEKIWKYFGKNDDDKLTEK 177
>1h8b_A ACT-EF34, alpha-actinin 2, skeletal muscle isoform; structural
protein, Z-DISK structural complex; NMR {Homo sapiens}
SCOP: a.39.1.7
Length = 75
Score = 26.3 bits (58), Expect = 1.6
Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 11/63 (17%)
Query: 90 SAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEID---EMMSTAVDQDTGRIP 146
+AE+++ +FR L DK Y+ + P++ + M +
Sbjct: 8 TAEQVIASFRILAS------DKPYILAEELRRE--LPPDQAQYCIKRMPAYSGPGSVPGA 59
Query: 147 YEY 149
+Y
Sbjct: 60 LDY 62
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 27.3 bits (60), Expect = 2.0
Identities = 14/99 (14%), Positives = 33/99 (33%), Gaps = 7/99 (7%)
Query: 21 FDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIV--- 77
F+ FD ++ + T L L ++ + + G I + IV
Sbjct: 95 FNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAI 154
Query: 78 ---SGMISENRFQPASAEELL-KAFRTLDKDNKSYLDKE 112
G + + + + + F+ +DK+ + +
Sbjct: 155 YDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLD 193
Score = 27.3 bits (60), Expect = 2.3
Identities = 12/90 (13%), Positives = 31/90 (34%), Gaps = 15/90 (16%)
Query: 84 NRFQPASAEELLK-AFRTLDKDNKSYLDKEYLTKLM-----------IEEGEPFTPEEI- 130
+ + E L+ F D + Y++KE + ++ + TP +
Sbjct: 116 SILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHV 175
Query: 131 DEMMSTA-VDQDTGRIPYEYYINHIMKSEE 159
D ++D G + + ++ + +
Sbjct: 176 DVFFQKMDKNKD-GIVTLDEFLESCQEDDN 204
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 27.4 bits (60), Expect = 2.1
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 7/60 (11%)
Query: 52 DIQEIIVTCENPEFGNIALSRFLP---IVSGMISENRFQPASAEELLKAFRTLDKDNKSY 108
+ +++ E P F NIA+ LP I+ ++ +EL K D +K Y
Sbjct: 160 GKKFLVIAYE-P-FENIAIE--LPPNEILFSENNDMDNNNDGVDELNKKCTFWDAISKLY 215
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein,
oxidoreductase, thiamine diphosphate, thiamine
pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A
{Escherichia coli} PDB: 2jgd_B*
Length = 933
Score = 27.6 bits (62), Expect = 2.2
Identities = 11/63 (17%), Positives = 19/63 (30%), Gaps = 2/63 (3%)
Query: 81 ISENRFQPASAEELLKAFRT-LDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVD 139
E A E++ +R LD + + + P+ E DE V+
Sbjct: 492 EQEKVATLEDATEMVNLYRDALDAGDCVVAEWRPMNMHSFTW-SPYLNHEWDEEYPNKVE 550
Query: 140 QDT 142
Sbjct: 551 MKR 553
>2nzw_A Alpha1,3-fucosyltransferase; FUCT, GT 10; 1.90A {Helicobacter
pylori} SCOP: c.87.1.11 PDB: 2nzx_A* 2nzy_A*
Length = 371
Score = 27.5 bits (60), Expect = 2.3
Identities = 14/94 (14%), Positives = 37/94 (39%), Gaps = 8/94 (8%)
Query: 65 FGNIALSRFLPIVSGMISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEP 124
+G+ ++++ S ++ + F+ + +E + + L +YLD Y L +G+
Sbjct: 264 WGSPSVAKDFNPKS-FVNVHDFK--NFDEAIDYIKYLHTHKNAYLDMLYENPLNTLDGKA 320
Query: 125 FTPEEID-----EMMSTAVDQDTGRIPYEYYINH 153
+ + + T ++ DT +
Sbjct: 321 YFYQNLSFKKILAFFKTILENDTIYHDNPFIFCR 354
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 26.9 bits (59), Expect = 2.8
Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 15/88 (17%)
Query: 86 FQPASAEE-LLKAFRTLDKDNKSYLDKEYLTKLM------------IEEGEPFTPEEIDE 132
+ E L AF D + + KE + +M E E ++
Sbjct: 158 LLRGTVHEKLKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVER 217
Query: 133 MMSTA-VDQDTGRIPYEYYINHIMKSEE 159
+QD G + + ++ K E
Sbjct: 218 FFQKMDRNQD-GVVTIDEFLETCQKDEN 244
>2po1_B Probable exosome complex exonuclease 2; RNAse PH,
hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus
abyssi} PDB: 2po0_B* 2pnz_B 2po2_B*
Length = 277
Score = 26.6 bits (59), Expect = 3.4
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 121 EGEPFTPEEIDEMMSTAVD 139
EG F EE+ + TA
Sbjct: 241 EGGAFKLEEVMYAVETAFK 259
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding
protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Length = 113
Score = 26.0 bits (57), Expect = 3.5
Identities = 12/75 (16%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
Query: 90 SAEELLKAFR--TLDKDNKSYLDKEYLTKLMIEE-----GEPFTPEEIDEMMSTAVDQDT 142
+ + ++ F + + +K L+K L +L+ E G+ ++MS +D +
Sbjct: 20 ALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMS-NLDSNR 78
Query: 143 -GRIPYEYYINHIMK 156
+ ++ Y +
Sbjct: 79 DNEVDFQEYCVFLSC 93
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 26.4 bits (58), Expect = 3.9
Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 15/88 (17%)
Query: 86 FQPASAEELLK-AFRTLDKDNKSYLDKEYLTKLM-----------IEEGEPFTPEE-IDE 132
+ +E L AF D + Y+ KE + +M + P + ++
Sbjct: 131 LLRGTVQEKLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVET 190
Query: 133 MMSTA-VDQDTGRIPYEYYINHIMKSEE 159
++D G + + +I K E
Sbjct: 191 FFQKMDKNKD-GVVTIDEFIESCQKDEN 217
Score = 25.2 bits (55), Expect = 9.3
Identities = 7/38 (18%), Positives = 21/38 (55%)
Query: 7 VHITNDFEKKIADAFDIFDHAGNKTIDCREVGTVLRAL 44
+ + ++K+ AF+++D + I E+ +++A+
Sbjct: 130 ILLRGTVQEKLNWAFNLYDINKDGYITKEEMLDIMKAI 167
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural
genomics, PSI-B protein structure initiative, NEW YORK
structural genomics consortium; 1.54A {Homo sapiens}
PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Length = 93
Score = 25.5 bits (56), Expect = 4.0
Identities = 12/73 (16%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
Query: 92 EELLKAFRT--LDKDNKSYLDKEYLTKLMIEE-----GEPFTPEEIDEMMSTAVDQDT-G 143
+ ++ F + +K L+K L +L+ E G+ ++MS +D +
Sbjct: 10 DVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMS-NLDSNRDN 68
Query: 144 RIPYEYYINHIMK 156
+ ++ Y +
Sbjct: 69 EVDFQEYCVFLSC 81
>2h4v_A Receptor-type tyrosine-protein phosphatase gamma; tyrosine receptor
phosphatase, human, structural GENO structural genomics
consortium, SGC; HET: FLC; 1.55A {Homo sapiens} PDB:
3qcd_A 3qcc_A 3qcb_A 3qce_A* 3qcf_A* 3qcg_A* 3qch_A*
3qci_A* 3qcj_A* 3qck_A* 2pbn_A 2hy3_A 3qcm_A* 3qcl_A*
3qcn_A
Length = 320
Score = 26.5 bits (59), Expect = 4.4
Identities = 6/49 (12%), Positives = 15/49 (30%)
Query: 81 ISENRFQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEE 129
+ S ++ +K L +N+ +++ T E
Sbjct: 13 LGTENLYFQSMKQFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEH 61
>2nn6_C Exosome complex exonuclease RRP43; RNA, exosome, PM/SCL,
phosphorolytic, hydrolase/transferase complex; 3.35A
{Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Length = 278
Score = 26.5 bits (58), Expect = 4.5
Identities = 19/143 (13%), Positives = 40/143 (27%), Gaps = 16/143 (11%)
Query: 3 LSEEVHITNDFEKKIADAFDIFDHAGNKTIDCREVGTV--LRALGGCPTEADIQEIIVTC 60
+ + D+ GN +D + L+ + + + +
Sbjct: 123 KEDLCISPGKLVWVLYCDLICLDYDGN-ILDACTFALLAALKNVQLPEVTINEETALAEV 181
Query: 61 ENPEFGNIALSRFLPIVS-GMISENRF--QPASAEELLKAFR---TLDKDNKSYLDKEYL 114
+ + + S + + P EE L +D++ K L
Sbjct: 182 NLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGK-------L 234
Query: 115 TKLMIEEGEPFTPEEIDEMMSTA 137
L G T ++ + MS A
Sbjct: 235 CCLHKPGGSGLTGAKLQDCMSRA 257
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 26.2 bits (57), Expect = 4.7
Identities = 7/48 (14%), Positives = 12/48 (25%), Gaps = 17/48 (35%)
Query: 23 IFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPE---FGN 67
+ + + C G VL + + E F N
Sbjct: 35 VERFSEGDVV-CALCGLVL--------SDKLVD-----TRSEWRTFSN 68
>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S
genomics, seattle structural genomics center for
infectious ssgcid; NMR {Brucella abortus}
Length = 120
Score = 25.6 bits (57), Expect = 4.9
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 96 KAFRTLDKDNKSYLDKEYLTKLMIEEG 122
FR L +D +S +D +LM+ +
Sbjct: 65 TTFRKLPEDVRSNVDAASARELMLAQP 91
>2qr4_A Peptidase M3B, oligoendopeptidase F; structural genomics, PSI-2,
protein ST initiative; 2.50A {Enterococcus faecium}
Length = 587
Score = 26.2 bits (58), Expect = 5.5
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 15/49 (30%)
Query: 118 MIEEGEPFTPEEIDEMMST--------AVDQDTG------RIPYEYYIN 152
E+G P T E + + AV++D RIP+ +Y N
Sbjct: 452 EDEKGVPLTSEYLSDSYGKLNAKYYGPAVEEDPEIKFEWSRIPH-FYYN 499
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 25.9 bits (57), Expect = 5.6
Identities = 17/160 (10%), Positives = 47/160 (29%), Gaps = 19/160 (11%)
Query: 14 EKKIADAFDIF-DHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSR 72
+K++ + F + ++ E + + + E + + +
Sbjct: 24 KKELQQWYKGFFKDCPSGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGYI--D 81
Query: 73 FLPIVSGMISENRFQPASAEELLK-AFRTLDKDNKSYLDKE----YLTKLMIEEGEPFTP 127
F + + + + L AF+ D DN + + + + G
Sbjct: 82 FKEFICAL---SVTSRGELNDKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKL 138
Query: 128 EEIDEMMSTAVDQ-----DT---GRIPYEYYINHIMKSEE 159
E ++ V++ D G++ E + +
Sbjct: 139 PEDEDTPEKRVNKIFNMMDKNKDGQLTLEEFCEGSKRDPT 178
>3d3b_A Protein NUSB, N utilization substance protein B; NUSB, NUSE, NUT
site, phage lambda, lambdan antitermina antitermination;
HET: NHE; 1.30A {Escherichia coli} PDB: 3d3c_A 3imq_A
1ey1_A
Length = 141
Score = 25.7 bits (57), Expect = 5.7
Identities = 7/61 (11%), Positives = 16/61 (26%), Gaps = 4/61 (6%)
Query: 86 FQPASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVDQDTGRI 145
++ F D Y +L+ G +D +M + + +
Sbjct: 24 LSQNDIADVEYQFLAEQDVKDV--DVLYFRELL--AGVATNTAYLDGLMKPYLSRLLEEL 79
Query: 146 P 146
Sbjct: 80 G 80
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA
interaction, nucleoprotein, supercoiled DNA; 3.10A
{Saccharomyces cerevisiae} SCOP: a.22.1.1
Length = 102
Score = 25.4 bits (55), Expect = 5.7
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 13 FEKKIADAFDIFDHAGNKTIDCREVGTVLRALG 45
E I D+ +HA KT+ +V L+ G
Sbjct: 62 LESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 94
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100
proteins, EF-; 1.94A {Homo sapiens}
Length = 104
Score = 25.2 bits (55), Expect = 6.0
Identities = 11/72 (15%), Positives = 27/72 (37%), Gaps = 7/72 (9%)
Query: 92 EELLKAFR--TLDKDNKSYLDKEYLTKLMIEE-----GEPFTPEEIDEMMSTAVDQDTGR 144
+ ++ F + + +K L+K L +L+ E G+ ++MS
Sbjct: 13 DVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLDSNRDNE 72
Query: 145 IPYEYYINHIMK 156
+ ++ Y +
Sbjct: 73 VDFQEYCVFLSS 84
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein,
alternative splicing, cholesterol biosynthesis,
endoplasmic reticulum, heme, iron; HET: HEM KLN BCD;
2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Length = 461
Score = 26.1 bits (58), Expect = 6.0
Identities = 19/121 (15%), Positives = 41/121 (33%), Gaps = 10/121 (8%)
Query: 21 FDIFDHAGNKTIDCREVGTVLRALGGCPTEADIQEIIVTCENPEFGNIALSRFLPIVSGM 80
++F+ I T L G + + E + G + + +L
Sbjct: 144 KNVFEALSELIIL-----TASHCLHGKEIRSQLNEKVAQLYADLDGGFSHAAWLLPGWLP 198
Query: 81 ISENRFQPASAEELLKAFRTLDKDNKSYLDKEY--LTKLM---IEEGEPFTPEEIDEMMS 135
+ R + + E+ F + + +K L L+ ++G P T +E+ M+
Sbjct: 199 LPSFRRRDRAHREIKDIFYKAIQKRRQSQEKIDDILQTLLDATYKDGRPLTDDEVAGMLI 258
Query: 136 T 136
Sbjct: 259 G 259
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 25.5 bits (56), Expect = 6.7
Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 15/90 (16%)
Query: 84 NRFQPASAEELLK-AFRTLDKDNKSYLDKE-------YLTKLMIEEGEPFTPEE-----I 130
+ + E L+ F D + Y++KE + +M + P E+ +
Sbjct: 83 SILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHV 142
Query: 131 DEMMSTA-VDQDTGRIPYEYYINHIMKSEE 159
D ++D G + + ++ + +
Sbjct: 143 DVFFQKMDKNKD-GIVTLDEFLESXQEDDN 171
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A
single chain of CSE4+SCM3+H4, fusion protein; NMR
{Saccharomyces cerevisiae}
Length = 235
Score = 25.7 bits (55), Expect = 6.8
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 5 EEVHITNDF-EKKIADAFDIFDHAGNKTIDCREVGTVLRALG 45
E + F E I D+ +HA KT+ +V L+ G
Sbjct: 186 EVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 227
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 25.8 bits (57), Expect = 7.0
Identities = 5/28 (17%), Positives = 15/28 (53%)
Query: 119 IEEGEPFTPEEIDEMMSTAVDQDTGRIP 146
I++G + P E+ +++ + + +P
Sbjct: 291 IDKGARWDPAELGPVVADLLGKARPPVP 318
>3fnv_A CDGSH iron sulfur domain-containing protein 2; diabetes, membrane
bound, thiazolidinedione, oxidative stres endoplasmic
reticulum, membrane; 2.10A {Homo sapiens}
Length = 83
Score = 24.7 bits (53), Expect = 7.3
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 14 EKKIADAFDIFDHAGNKTIDCR 35
K+ + +I D + K CR
Sbjct: 27 NPKVVNEINIEDLSLTKAAYCR 48
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL,
phosphorolytic, hydrolase/transferase complex; 3.35A
{Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Length = 358
Score = 25.8 bits (56), Expect = 7.3
Identities = 2/17 (11%), Positives = 5/17 (29%)
Query: 121 EGEPFTPEEIDEMMSTA 137
G +++ A
Sbjct: 255 GGIMLLKDQVLRCSKIA 271
>3ce2_A Putative peptidase; structural genomics, unknown function, P
protein structure initiative; 2.60A {Chlamydophila
abortus}
Length = 618
Score = 25.8 bits (57), Expect = 8.0
Identities = 5/17 (29%), Positives = 6/17 (35%)
Query: 118 MIEEGEPFTPEEIDEMM 134
E G P T E +
Sbjct: 485 AAEHGVPLTEEYLSSTY 501
>2pbk_A KSHV protease; KSHV, KSHV protease, herpesvirus protease, viral
protease, V protein; 1.73A {Human herpesvirus} SCOP:
b.57.1.1 PDB: 1fl1_A 3njq_A*
Length = 228
Score = 25.6 bits (56), Expect = 8.2
Identities = 8/51 (15%), Positives = 25/51 (49%)
Query: 89 ASAEELLKAFRTLDKDNKSYLDKEYLTKLMIEEGEPFTPEEIDEMMSTAVD 139
AE ++ F ++ K ++++ + + + + P ++ +M+ A+D
Sbjct: 150 HDAEWVVSRFSSVSKSERAHILQHVSSCRLEDLSTPNFVSPLETLMAKAID 200
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA
binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1
PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Length = 84
Score = 24.4 bits (53), Expect = 9.5
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 17 IADAFDIFDHAGNKTIDCREVGTVLRALG 45
I DA +HA KT+ +V L+ G
Sbjct: 48 IRDAVTYTEHAKRKTVTAMDVVYALKRQG 76
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.135 0.383
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,639,413
Number of extensions: 160200
Number of successful extensions: 1172
Number of sequences better than 10.0: 1
Number of HSP's gapped: 947
Number of HSP's successfully gapped: 315
Length of query: 161
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 75
Effective length of database: 4,300,587
Effective search space: 322544025
Effective search space used: 322544025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.1 bits)