BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16400
(145 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 12/78 (15%)
Query: 26 STLARFHWLNWDPNPKYVRTTQENQYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPH 85
STL+ ++ D P Y CQ+CGKR+ KS +K+H G E H+C
Sbjct: 15 STLSTHLLIHSDTRP----------YPCQYCGKRFHQKSDMKKHTFIHTG--EKPHKCQV 62
Query: 86 CDYRAKQSGNLRVHIRKY 103
C QS NL H RK+
Sbjct: 63 CGKAFSQSSNLITHSRKH 80
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIRKY 103
T E Y C CGK + K L RH+ G E ++CP C Q NLR H R +
Sbjct: 45 TGEKPYKCPECGKSFSDKKDLTRHQRTHTG--EKPYKCPECGKSFSQRANLRAHQRTH 100
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIRKY 103
T E Y C CGK + ++ L+ H+ G E + CP C Q +LR H R +
Sbjct: 73 TGEKPYKCPECGKSFSQRANLRAHQRTHTG--EKPYACPECGKSFSQLAHLRAHQRTH 128
Score = 29.6 bits (65), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIRKY 103
T E Y+C CGK + + L+ H+ G E ++CP C + NL H R +
Sbjct: 101 TGEKPYACPECGKSFSQLAHLRAHQRTHTG--EKPYKCPECGKSFSREDNLHTHQRTH 156
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIRKY 103
T E Y C CGK + + L H+ G E ++CP C + L VH R +
Sbjct: 129 TGEKPYKCPECGKSFSREDNLHTHQRTHTG--EKPYKCPECGKSFSRRDALNVHQRTH 184
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 34.7 bits (78), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIRKYHT 105
+ E Y C C R+ T+K H + + CPHCD + +L VH+RK H+
Sbjct: 11 SGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS 70
>pdb|2M0E|A Chain A, Solution Structure Of Miz-1 Zinc Finger 6
Length = 29
Score = 33.9 bits (76), Expect = 0.033, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 81 HQCPHCDYRAKQSGNLRVHIR 101
H+CPHCD + Q GNL+ H++
Sbjct: 3 HKCPHCDKKFNQVGNLKAHLK 23
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 32.7 bits (73), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 45 TTQENQYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIRKYH 104
++ + +C+ CGK +R L RH++ G E + CP C R K+ + H+R +
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSG--EKPYSCPVCGLRFKRKDRMSYHVRSHD 59
Query: 105 TSI 107
S+
Sbjct: 60 GSV 62
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 32.7 bits (73), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 48 ENQYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIR 101
E Y C CGK + S L++H+ G E ++CP C QS +L+ H R
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTG--EKPYKCPECGKSFSQSSDLQKHQR 53
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 41 KYVRT-TQENQYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVH 99
K+ RT T E Y C CGK + S L++H+ G E ++CP C +S +L H
Sbjct: 22 KHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTG--EKPYKCPECGKSFSRSDHLSRH 79
Query: 100 IR 101
R
Sbjct: 80 QR 81
>pdb|5ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 79 PVHQCPHCDYRAKQSGNLRVHIRKYHT 105
+QC +C+YR+ S NL+ HI+ H+
Sbjct: 1 KTYQCQYCEYRSADSSNLKTHIKTKHS 27
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 41 KYVRTTQENQYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPH--CDYRAKQSGNLRV 98
K++ T + C CGK + S LKRH++ G E QC C R NLR
Sbjct: 25 KHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTG--EKPFQCTFEGCGKRFSLDFNLRT 82
Query: 99 HIR 101
H+R
Sbjct: 83 HVR 85
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 46 TQENQYSC--QHCGKRYRWKSTLKRHEVFECGGKEPVHQCPH--CDYRAKQSGNLRVHI 100
T E + C + CGKR+ L+ H G + V CP C+ + QS NL+ HI
Sbjct: 58 TGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYV--CPFDGCNKKFAQSTNLKSHI 114
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 53 CQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIRKYH 104
C +CGK +R L H G E ++C C+Y A Q +LR H+ ++H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTG--EKPYKCEFCEYAAAQKTSLRYHLERHH 56
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 51 YSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIR 101
+ C+ CGK + K LK H G K ++C CDY A S +L H+R
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKP--YKCKTCDYAAADSSSLNKHLR 57
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 48 ENQYSCQHCGKRYRWKSTLKRHEVFECGGK 77
E Y+C+ CGK +RW S L +H+ G K
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEK 39
>pdb|1KLR|A Chain A, Nmr Structure Of The Zfy-6t[y10f] Zinc Finger
Length = 30
Score = 30.8 bits (68), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 79 PVHQCPHCDYRAKQSGNLRVHIRKYHT 105
+QC +C++R+ S NL+ HI+ H+
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHS 27
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 30.8 bits (68), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 50 QYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIR 101
+Y C+ CG R + S LK+H + P H C +C++ K GNL H++
Sbjct: 1 KYICEECGIRXKKPSMLKKH-IRTHTDVRPYH-CTYCNFSFKTKGNLTKHMK 50
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHEVFECGGK 77
T+E Y C CGK +R +S L H+V G K
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 30.4 bits (67), Expect = 0.37, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 15/32 (46%)
Query: 48 ENQYSCQHCGKRYRWKSTLKRHEVFECGGKEP 79
E Y C CGK + WKS L HE G P
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAGVSGP 41
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 29.6 bits (65), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 63 KSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIRKYHTSIELQSPS 113
K+ L+ HE C + +C +C + KQ NL H++K+H ++ PS
Sbjct: 22 KAALRIHERIHC--TDRPFKCNYCSFDTKQPSNLSKHMKKFHG--DMSGPS 68
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 29.6 bits (65), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 51 YSCQHCGKRYRWKSTLKRHEVFECG 75
Y CQ CGK +R K +L HE G
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTG 35
>pdb|1KLS|A Chain A, Nmr Structure Of The Zfy-6t[y10l] Zinc Finger
Length = 30
Score = 29.3 bits (64), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 79 PVHQCPHCDYRAKQSGNLRVHIRKYHT 105
+QC +C+ R+ S NL+ HI+ H+
Sbjct: 1 KTYQCQYCELRSADSSNLKTHIKTKHS 27
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 48 ENQYSCQHCGKRYRWKSTLKRHEVFECGGK 77
E Y C CGK +R S L H+V G K
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEK 39
>pdb|1XRZ|A Chain A, Nmr Structure Of A Zinc Finger With Cyclohexanylalanine
Substituted For The Central Aromatic Residue
Length = 30
Score = 29.3 bits (64), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 79 PVHQCPHCDYRAKQSGNLRVHIRKYHT 105
+QC +C+ R+ S NL+ HI+ H+
Sbjct: 1 KTYQCQYCEXRSADSSNLKTHIKTKHS 27
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 48 ENQYSCQHCGKRYRWKSTLKRHEVFECGGK 77
E Y C CGK +R S L RH++ G K
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEK 39
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 51 YSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIR 101
Y C C +R+K L H+ G E ++C C + + NL+ H R
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTG--EKPYRCNICGAQFNRPANLKTHTR 66
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHEVFECGGK-EPVHQCPHCDYRAKQSGNLRVHI 100
T E + C CGK Y K L HE C + E V C C ++ LR+H+
Sbjct: 31 TGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHM 86
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 81 HQCPHCDYRAKQSGNLRVHIRKY 103
++CP C Y + NL VH+RK+
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKH 32
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 48 ENQYSCQHCGKRYRWKSTLKRHE 70
E Y C CGK + WKS L+ H+
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQ 32
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIRKYHT 105
T E Y+C C K +R + L+ H KE +C C QS L V H
Sbjct: 41 TDERPYTCDICHKAFRRQDHLRDHRYIH--SKEKPFKCQECGKGFCQSRTLAV-----HK 93
Query: 106 SIELQSPSPA 115
++ +Q+ SP
Sbjct: 94 TLHMQTSSPT 103
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 48 ENQYSCQHCGKRYRWKSTLKRHEVFECGGK 77
E Y C CGK +R +S+L H+ G K
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEK 39
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 48 ENQYSCQHCGKRYRWKSTLKRHEVFECGGK 77
E Y C CGK +R S L RH+ G K
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEK 39
>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 27.3 bits (59), Expect = 2.8, Method: Composition-based stats.
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 53 CQHCGKRYRWKSTLKRHEVF 72
C CGK+++ K TLK H++
Sbjct: 12 CDMCGKKFKSKGTLKSHKLL 31
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 27.3 bits (59), Expect = 2.9, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 45 TTQENQYSCQHCGKRYRWKSTLKRHEVFECGGK 77
++ E YSC CGK + +KS L H+ G K
Sbjct: 5 SSGEKPYSCNECGKAFTFKSQLIVHKGVHTGVK 37
>pdb|2CTD|A Chain A, Solution Structure Of Two Zf-C2h2 Domains From Human
Zinc Finger Protein 512
Length = 96
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 41 KYVRTTQENQYSCQHCGKRYRWKSTLKRH 69
K++ ++ ++C HCGK+ R + +K H
Sbjct: 53 KHMENCKQEMFTCHHCGKQLRSLAGMKYH 81
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 79 PVHQCPHCDYRAKQSGNLRVHIRKYHT 105
+QC +C+ R S NL+ HI+ H+
Sbjct: 1 KTYQCQYCEKRFADSSNLKTHIKTKHS 27
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 14/30 (46%)
Query: 48 ENQYSCQHCGKRYRWKSTLKRHEVFECGGK 77
E Y C CGK + S L RH GGK
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGK 39
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 48 ENQYSCQHCGKRYRWKSTLKRHEVFECGGK 77
E Y C CGK + KSTL H+ G K
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEK 39
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 48 ENQYSCQHCGKRYRWKSTLKRHEVFECGGK 77
E Y C CGK + +S+L H+ G K
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKK 39
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 2/72 (2%)
Query: 35 NWDPNPKYVRTTQENQYSCQH--CGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQ 92
NW + T E + C+ C K + L RH + G K CD R
Sbjct: 18 NWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTT 77
Query: 93 SGNLRVHIRKYH 104
N++ H ++H
Sbjct: 78 KANMKKHFNRFH 89
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 24/57 (42%)
Query: 48 ENQYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIRKYH 104
E+ Y C+ C + Y S RH V V+ CP C + N+ H++ H
Sbjct: 8 EHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Transcriptional Repressor Ctcf
Length = 86
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T E Y+C HC K +R K L H
Sbjct: 11 TGEKPYACSHCDKTFRQKQLLDMH 34
>pdb|2EOU|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
370- 400) Of Human Zinc Finger Protein 473
Length = 44
Score = 26.9 bits (58), Expect = 4.1, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 44 RTTQENQYSCQHCGKRYRWKSTLKRHEVFECGGKEP 79
+TT E CQ CGK +R S L H+ G P
Sbjct: 10 KTTSE----CQECGKIFRHSSLLIEHQALHAGESGP 41
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 51 YSCQHCGKRYRWKSTLKRHEVFECGGK 77
+ C HCGK +R K L H+ G K
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 26.9 bits (58), Expect = 4.3, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 45 TTQENQYSCQHCGKRYRWKSTLKRHEVFECGGKEP 79
++ E Y C CGK + +KS L H+ G P
Sbjct: 5 SSGEKPYVCSDCGKAFTFKSQLIVHQGIHTGVSGP 39
>pdb|2OK7|A Chain A, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK7|B Chain B, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK7|C Chain C, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK7|D Chain D, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK7|E Chain E, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK7|F Chain F, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK8|A Chain A, Ferredoxin-nadp+ Reductase From Plasmodium Falciparum
pdb|2OK8|B Chain B, Ferredoxin-nadp+ Reductase From Plasmodium Falciparum
pdb|2OK8|C Chain C, Ferredoxin-nadp+ Reductase From Plasmodium Falciparum
pdb|2OK8|D Chain D, Ferredoxin-nadp+ Reductase From Plasmodium Falciparum
Length = 316
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 51 YSCQHCGKRYRWKSTLKRHEVFECGGKEPVH 81
Y C H RY+ LK H+ F+ K+ VH
Sbjct: 282 YICGHKSIRYKVMDILKSHDQFDEKKKKRVH 312
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 2/72 (2%)
Query: 35 NWDPNPKYVRTTQENQYSCQH--CGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQ 92
NW + T E + C+ C K + L RH + G K CD R
Sbjct: 27 NWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTT 86
Query: 93 SGNLRVHIRKYH 104
N++ H ++H
Sbjct: 87 KANMKKHFNRFH 98
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 51 YSCQHCGKRYRWKSTLKRHEVFECGGK 77
Y C CGK + S+L H+V G K
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEK 39
>pdb|3JQQ|A Chain A, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
pdb|3JQQ|B Chain B, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
pdb|3JQQ|C Chain C, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
pdb|3JQQ|D Chain D, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
pdb|3JQQ|E Chain E, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
pdb|3JQQ|F Chain F, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
Length = 316
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 49 NQYSCQH--CGK---RYRWKSTLKRHEVFECGGKEPVH 81
N Y C+ CGK RY+ LK H+ F+ K+ VH
Sbjct: 275 NNYKCELYICGKKSIRYKVMDILKSHDQFDEKKKKRVH 312
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 48 ENQYSCQHCGKRYRWKSTLKRHEVFECGGK 77
E Y C CGK + KSTL H+ G K
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEK 39
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHEVFECG 75
T+E+ + C CGK + + L +H++ G
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHAG 37
>pdb|1X6F|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 462
Length = 88
Score = 26.6 bits (57), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 64 STLKRHEVFECGG---KEPVHQCPHCDYRAKQSGNLRVHIRKYHTSIELQSPSPAPRKPI 120
S LKR + G + +QC HCD + + + L H+ ++ + ++ RK +
Sbjct: 6 SGLKRDFIILGNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQERRKQL 65
Query: 121 VNPMQ 125
++ +
Sbjct: 66 LSKQK 70
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 26.2 bits (56), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 48 ENQYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIRKYHTS 106
E Y C CGK + S L +H+ G E ++C C Q+ L H R HTS
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTG--EKPYKCLECGKAFSQNSGLINHQR-IHTS 67
>pdb|2LVH|A Chain A, Solution Structure Of The Zinc Finger Afv1p06 Protein
From The Hyperthermophilic Archaeal Virus Afv1
Length = 59
Score = 26.2 bits (56), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 45 TTQENQYSCQHCGKRYRWKSTLKRHEV 71
++ E Y C CG +R K L RH V
Sbjct: 5 SSMERVYQCLRCGLTFRTKKQLIRHLV 31
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 26.2 bits (56), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 48 ENQYSCQHCGKRYRWKSTLKRH 69
E Y C+ CG R+R TLK H
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSH 30
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 26.2 bits (56), Expect = 6.7, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 76 GKEPVHQCPHCDYRAKQSGNLRVHIRKYHTSIELQSPS 113
G++P + CP C R K+ + H+R + S+ PS
Sbjct: 7 GEKP-YSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPS 43
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 26.2 bits (56), Expect = 7.3, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 45 TTQENQYSCQHCGKRYRWKSTLKRHEVFECGGK 77
++ E Y C CGK + KS L H+ G K
Sbjct: 5 SSGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.2 bits (56), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 48 ENQYSCQHCGKRYRWKSTLKRHEVFECGGK 77
E Y C CGK + S L RH+ G K
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEK 39
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 25.8 bits (55), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 14/30 (46%)
Query: 48 ENQYSCQHCGKRYRWKSTLKRHEVFECGGK 77
E Y C CGK + KS L RH G K
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEK 39
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 25.8 bits (55), Expect = 8.4, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 45 TTQENQYSCQHCGKRYRWKSTLKRHEVFECGGKEP 79
++ + Y C CGK + KS L HE G P
Sbjct: 5 SSGQKPYVCNECGKAFGLKSQLIIHERIHTGESGP 39
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 25.8 bits (55), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 48 ENQYSCQHCGKRYRWKSTLKRHEVFECG 75
E Y CQ CGK +R S L +H G
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSG 37
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 25.8 bits (55), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 45 TTQENQYSCQHCGKRYRWKSTLKRHEVFECG 75
++ E Y C+ CGK + + +L HE G
Sbjct: 5 SSGEKPYQCKECGKSFSQRGSLAVHERLHTG 35
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 25.8 bits (55), Expect = 9.1, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 45 TTQENQYSCQHCGKRYRWKSTLKRHEVFECGGKEP 79
++ E + C +CGK + +KS L H+ G P
Sbjct: 5 SSGEKLHECNNCGKAFSFKSQLIIHQRIHTGESGP 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.131 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,326,466
Number of Sequences: 62578
Number of extensions: 163053
Number of successful extensions: 582
Number of sequences better than 100.0: 128
Number of HSP's better than 100.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 412
Number of HSP's gapped (non-prelim): 172
length of query: 145
length of database: 14,973,337
effective HSP length: 89
effective length of query: 56
effective length of database: 9,403,895
effective search space: 526618120
effective search space used: 526618120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)