RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16400
(145 letters)
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 63.3 bits (155), Expect = 1e-14
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 44 RT-TQENQYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIRK 102
RT + E Y C C R+ T+K H + + CPHCD + +L VH+RK
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Query: 103 YHT 105
H+
Sbjct: 68 QHS 70
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 55.6 bits (135), Expect = 1e-11
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 44 RT-TQENQYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIRK 102
T E+ Y C+ C + Y S RH V V+ CP C + N+ H++
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Query: 103 YH 104
H
Sbjct: 63 IH 64
Score = 27.1 bits (61), Expect = 0.62
Identities = 5/28 (17%), Positives = 7/28 (25%)
Query: 81 HQCPHCDYRAKQSGNLRVHIRKYHTSIE 108
++C C N H H
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNV 38
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 55.2 bits (134), Expect = 2e-11
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIRKYHT 105
+ + C C K+ L+ HE C + P +C +C + KQ NL H++K
Sbjct: 5 SSGHPEKCSECSYSCSSKAALRIHERIHCTDR-P-FKCNYCSFDTKQPSNLSKHMKK-FH 61
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 52.4 bits (126), Expect = 3e-10
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 45 TTQENQYSCQHCGKRYRWKSTLKRHEVF--ECGGKEPVHQCPHCDYRAKQSGNLRVHIRK 102
++ + C+ CG R K++L H+ E C C R ++ ++ H K
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALR-FPCEFCGKRFEKPDSVAAHRSK 60
Query: 103 YHTSIELQSPSPA 115
H ++ L +
Sbjct: 61 SHPALLLAPQESS 73
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 47.8 bits (113), Expect = 1e-08
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 50 QYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIRKY 103
+Y C+ CG R + S LK+H + C +C++ K GNL H++
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTD--VRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 28.9 bits (64), Expect = 0.11
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 41 KYVRT-TQENQYSCQHCGKRYRWKSTLKRHEVFECGGK 77
K++RT T Y C +C ++ K L +H + K
Sbjct: 19 KHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 42.8 bits (102), Expect = 2e-06
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIRKYHT 105
+ C+ CGK + K LK H G K P ++C CDY A S +L H+R H+
Sbjct: 4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVK-P-YKCKTCDYAAADSSSLNKHLRI-HS 60
Score = 39.3 bits (93), Expect = 4e-05
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIRKYHT 105
T Y C+ C S+L +H + P +C C Y ++ S L VH+R HT
Sbjct: 32 TGVKPYKCKTCDYAAADSSSLNKHLRIHSDER-P-FKCQICPYASRNSSQLTVHLRS-HT 88
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 43.8 bits (104), Expect = 2e-06
Identities = 14/67 (20%), Positives = 19/67 (28%), Gaps = 8/67 (11%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHEVFECGGK-------EPVHQCPHCDYRAKQSGNLRV 98
+ + C + + L H E G +CP K L
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVN 80
Query: 99 HIRKYHT 105
HIR HT
Sbjct: 81 HIRV-HT 86
Score = 31.5 bits (72), Expect = 0.050
Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 5/66 (7%)
Query: 42 YVRTTQENQYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPH--CDYRAKQSGNLRVH 99
C GK ++ K L H G K P CP C +S NL++H
Sbjct: 54 EQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEK-P-FPCPFPGCGKIFARSENLKIH 111
Query: 100 IRKYHT 105
R HT
Sbjct: 112 KRT-HT 116
Score = 30.7 bits (70), Expect = 0.084
Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 17/70 (24%)
Query: 46 TQENQYSCQH--CGKRYRWKSTLKRHEV-------FECGGKEPVHQCPHCDYRAKQSGNL 96
T E + C CGK + LK H+ F+C + CD R S +
Sbjct: 86 TGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEG-------CDRRFANSSDR 138
Query: 97 RVHIRKYHTS 106
+ H+ HTS
Sbjct: 139 KKHMHV-HTS 147
Score = 26.5 bits (59), Expect = 2.6
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 44 RT-TQENQYSCQH--CGKRYRWKSTLKRH 69
RT T E + C+ C +R+ S K+H
Sbjct: 113 RTHTGEKPFKCEFEGCDRRFANSSDRKKH 141
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 41.7 bits (99), Expect = 4e-06
Identities = 16/60 (26%), Positives = 26/60 (43%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIRKYHT 105
+ E YSC CG R++ K + H G + C C + +L HI++ H+
Sbjct: 31 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHS 90
Score = 38.6 bits (91), Expect = 7e-05
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIRKYHT 105
+ + +C+ CGK +R L RH++ G K P + CP C R K+ + H+R H
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEK-P-YSCPVCGLRFKRKDRMSYHVRS-HD 59
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 41.5 bits (98), Expect = 4e-06
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 46 TQENQYSCQH--CGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIRKY 103
TQ+ Y C H C KR+ S LKRHE G P + C + K H+ +
Sbjct: 27 TQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKDDSCSFVGKTWTLYLKHVAEC 84
Query: 104 H 104
H
Sbjct: 85 H 85
Score = 35.3 bits (82), Expect = 8e-04
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 51 YSCQH--CGKRYRWKSTLKRHEVFECGGKEPVHQCPH--CDYRAKQSGNLRVHIRKYHT 105
Y C CGK ++ + LK H+ + ++CPH CD R L+ H + H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQ--QLPYECPHEGCDKRFSLPSRLKRHEKV-HA 57
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 43.0 bits (102), Expect = 5e-06
Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 9/65 (13%)
Query: 48 ENQYSCQHCGKRYRWKSTLKRHEVFEC--GGKEPVHQCPHCDYRA-----KQSGNLRVHI 100
E C + + + L H E G ++ C K L VH+
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKE-FVCHWGGCSRELRPFKAQYMLVVHM 59
Query: 101 RKYHT 105
R+ HT
Sbjct: 60 RR-HT 63
Score = 36.0 bits (84), Expect = 0.001
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 19/73 (26%)
Query: 44 RT-TQENQYSCQH--CGKRYRWKSTLKRHEV--------FECGGKEPVHQCPHCDYRAKQ 92
R+ T E Y C+H C K + S +H+ + C + P C R
Sbjct: 90 RSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVC-------KLPGCTKRYTD 142
Query: 93 SGNLRVHIRKYHT 105
+LR H++
Sbjct: 143 PSSLRKHVKT-VH 154
Score = 30.3 bits (69), Expect = 0.12
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 10/67 (14%)
Query: 46 TQENQYSCQHCG-----KRYRWKSTLKRHEVFECGGKEPVHQCPH--CDYRAKQSGNLRV 98
+ ++ C G + ++ + L H G K P H+C C + NL+
Sbjct: 30 GERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEK-P-HKCTFEGCRKSYSRLENLKT 87
Query: 99 HIRKYHT 105
H+R HT
Sbjct: 88 HLR-SHT 93
Score = 30.3 bits (69), Expect = 0.12
Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 17/73 (23%)
Query: 43 VRT-TQENQYSCQH--CGKRYRWKSTLKRHEV-------FECGGKEPVHQCPHCDYRAKQ 92
+R T E + C C K Y LK H + C + C
Sbjct: 59 MRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMC-------EHEGCSKAFSN 111
Query: 93 SGNLRVHIRKYHT 105
+ + H + H+
Sbjct: 112 ASDRAKHQNRTHS 124
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 42.2 bits (98), Expect = 6e-06
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 41 KYVRTTQENQYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHI 100
+ + + +Q+ C C + +LK+H + K CP C + + H+
Sbjct: 65 RLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKV----CPVCKKEFTSTDSALDHV 120
Query: 101 RKYHT 105
K H
Sbjct: 121 CKKHN 125
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 41.0 bits (97), Expect = 8e-06
Identities = 16/66 (24%), Positives = 20/66 (30%), Gaps = 6/66 (9%)
Query: 44 RT-TQENQYSCQHCGKRYRWKSTLKRHEVF---ECGGKEPVHQCPHCDYRAKQSGNLRVH 99
RT T E Y+C HC K +R K L H C C + + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAA-FVCSKCGKTFTRRNTMARH 66
Query: 100 IRKYHT 105
Sbjct: 67 ADN-CA 71
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 41.3 bits (98), Expect = 1e-05
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIRKYHT 105
E ++C C + +R + L+ H V G P ++C C + Q +L+ H+ K H+
Sbjct: 62 RSEQVFTCSVCQETFRRRMELRLHMVSHTGEM-P-YKCSSCSQQFMQKKDLQSHMIKLHS 119
Score = 39.4 bits (93), Expect = 5e-05
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIRKY-- 103
+ + C C K++ K LK H G K P +CP C + NL H +
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEK-P-FECPKCGKCYFRKENLLEHEARNCM 60
Query: 104 HT 105
+
Sbjct: 61 NR 62
Score = 37.9 bits (89), Expect = 2e-04
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHEVFECG--GKEPVHQCPHCDYRAKQSGNLRVHIRKY 103
T E + C CGK Y K L HE C ++ C C ++ LR+H+
Sbjct: 31 TGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV-FTCSVCQETFRRRMELRLHMVS- 88
Query: 104 HT 105
HT
Sbjct: 89 HT 90
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 40.5 bits (96), Expect = 1e-05
Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIRKYHT 105
+ Y CQ+CGKR+ KS +K+H G K P H+C C QS NL H RK HT
Sbjct: 25 SDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEK-P-HKCQVCGKAFSQSSNLITHSRK-HT 81
Score = 33.9 bits (79), Expect = 0.002
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 51 YSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIRKYHT 105
+ C+ CGK ++ STL H + + P + C +C R Q +++ H HT
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTR-P-YPCQYCGKRFHQKSDMKKHTF-IHT 53
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 38.6 bits (91), Expect = 3e-05
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 51 YSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIRKYHT 105
+ C+ C + + + LKRH K P + C C+ + L H +K H+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK-P-YPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 30.1 bits (69), Expect = 0.038
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHE 70
T E Y C C + + + L RH
Sbjct: 26 TNEKPYPCGLCNRAFTRRDLLIRHA 50
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 39.0 bits (90), Expect = 5e-05
Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 2/65 (3%)
Query: 44 RTTQENQYSCQHCGKRYRWKSTLKRHEVFECGG--KEPVHQCPHCDYRAKQSGNLRVHIR 101
E Y C++C + + H E + C C++ K+ L H
Sbjct: 12 NKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNL 71
Query: 102 KYHTS 106
KYH
Sbjct: 72 KYHPG 76
Score = 32.1 bits (72), Expect = 0.022
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 81 HQCPHCDYRAKQSGNLRVHIRKYHTSIELQS 111
++C +C ++ H+ H ++ L S
Sbjct: 19 YECKYCTFQTPDLNMFTFHVDSEHPNVVLNS 49
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 37.4 bits (88), Expect = 1e-04
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIRKYHT 105
+ Y C C +R+K L H+ G K P ++C C + + NL+ H R H+
Sbjct: 13 HSDKPYKCDRCQASFRYKGNLASHKTVHTGEK-P-YRCNICGAQFNRPANLKTHTRI-HS 69
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 37.8 bits (89), Expect = 1e-04
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Query: 44 RT-TQENQYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIRK 102
R T + + C+ C + + L H G K P C C + +S + H +
Sbjct: 27 RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK-P-FACDICGRKFARSDERKRHTKI 84
Query: 103 YHT 105
H
Sbjct: 85 -HL 86
Score = 34.7 bits (81), Expect = 0.002
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 51 YSCQ--HCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIRKYHT 105
Y+C C +R+ +L RH G K P QC C +S +L HIR HT
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQK-P-FQCRICMRNFSRSDHLTTHIRT-HT 58
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 38.4 bits (88), Expect = 2e-04
Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 6/26 (23%)
Query: 91 KQSGNLRVHIRKYHTSIELQSPSPAP 116
KQ+ ++K S++L + AP
Sbjct: 19 KQA------LKKLQASLKLYADDSAP 38
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 37.1 bits (87), Expect = 2e-04
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 3/55 (5%)
Query: 51 YSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIRKYHT 105
+ C+ C + + L H G K P C C + +S + H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEK-P-FACDICGRKFARSDERKRHRDI-QH 55
Score = 35.5 bits (83), Expect = 8e-04
Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 16/70 (22%)
Query: 44 RT-TQENQYSCQHCGKRYRWKSTLKRHEVFECGGKEPVH-----QCPHCDYRAKQSGNLR 97
RT T E ++C CG+++ KRH + + ++ +L
Sbjct: 24 RTHTGEKPFACDICGRKFARSDERKRHRD--------IQHILPILEDKVEELLSKNYHLE 75
Query: 98 VHIRKY--HT 105
+ +
Sbjct: 76 NEVARLKKLV 85
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 37.9 bits (89), Expect = 2e-04
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 15/62 (24%)
Query: 51 YSCQHCGKRYRWKSTLKRHEV-------FECGGKEPVHQCPHCDYRAKQSGNLRVHIRKY 103
+ C CGK + S LKRH++ F+C + C R NLR H+R
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEG-------CGKRFSLDFNLRTHVRI- 86
Query: 104 HT 105
HT
Sbjct: 87 HT 88
Score = 34.4 bits (80), Expect = 0.003
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 6/61 (9%)
Query: 47 QENQYSCQH--CGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIRKYH 104
+ +C H C K +R S +++H G H C C +S L+ H H
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH--GPRV-HVCAECGKAFVESSKLKRHQL-VH 57
Query: 105 T 105
T
Sbjct: 58 T 58
Score = 33.3 bits (77), Expect = 0.008
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 17/64 (26%)
Query: 51 YSCQH--CGKRYRWKSTLKRHEV-------FECGGKEPVHQCPHCDYRAKQSGNLRVHIR 101
+ C CGKR+ L+ H + C C+ + QS NL+ HI
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDG-------CNKKFAQSTNLKSHIL 115
Query: 102 KYHT 105
H
Sbjct: 116 T-HA 118
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 36.8 bits (86), Expect = 2e-04
Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 46 TQENQYSCQH--CGKRYRWKSTLKRHEVFECGGKEPVHQCPH--CDYRAKQSGNLRVHIR 101
+ + C CG+ + + L H+ ++ ++ CP C +L+ H++
Sbjct: 3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKS-FSCPEPACGKSFNFKKHLKEHMK 61
Query: 102 KYHT 105
H+
Sbjct: 62 L-HS 64
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 35.6 bits (83), Expect = 3e-04
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
E Y C+ CG R+R TLK H
Sbjct: 7 GGEKPYPCEICGTRFRHLQTLKSH 30
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 36.7 bits (86), Expect = 4e-04
Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 33/92 (35%)
Query: 45 TTQENQYSCQH--CGKRYRWKSTLKRH------------EVFECG--------------- 75
+++ + C + C KRY S L+ H + +C
Sbjct: 1 ASEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR 60
Query: 76 --GKEPVHQCPHCDYRAKQSGNLRVHIRKYHT 105
G +P QC C + +S +L+ H R HT
Sbjct: 61 HTGVKP-FQCKTCQRKFSRSDHLKTHTRT-HT 90
Score = 35.2 bits (82), Expect = 0.002
Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 15/66 (22%)
Query: 44 RT-TQENQYSCQHCGKRYRWKSTLKRHEV-------FECGGKEPVHQCPHCDYRAKQSGN 95
R T + C+ C +++ LK H F C C + +S
Sbjct: 59 RRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPS-------CQKKFARSDE 111
Query: 96 LRVHIR 101
L H
Sbjct: 112 LVRHHN 117
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 34.1 bits (79), Expect = 0.001
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHE 70
T E + C+ CG + W +L +H
Sbjct: 8 TGEKPFQCKECGMNFSWSCSLFKHL 32
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 34.8 bits (81), Expect = 0.001
Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 15/69 (21%)
Query: 44 RTTQENQYSCQHCGKRYRWKSTLKRHEV-------FECGGKEPVHQCPHCDYRAKQSGNL 96
+ T + CGK Y S LK H + C C ++ +S L
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHC-------DWDGCGWKFARSDEL 53
Query: 97 RVHIRKYHT 105
H RK HT
Sbjct: 54 TRHYRK-HT 61
Score = 33.7 bits (78), Expect = 0.004
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 51 YSCQH--CGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIR 101
Y C CG ++ L RH G + P QC CD +S +L +H++
Sbjct: 36 YHCDWDGCGWKFARSDELTRHYRKHTGHR-P-FQCQKCDRAFSRSDHLALHMK 86
Score = 26.0 bits (58), Expect = 2.2
Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 1/27 (3%)
Query: 44 RT-TQENQYSCQHCGKRYRWKSTLKRH 69
R T + CQ C + + L H
Sbjct: 58 RKHTGHRPFQCQKCDRAFSRSDHLALH 84
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 34.9 bits (81), Expect = 0.002
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 44 RT-TQENQYSCQH--CGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHI 100
RT T E Y C C R+ L RH G K QC C+ +S +L +H+
Sbjct: 38 RTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKP--FQCGVCNRSFSRSDHLALHM 95
Query: 101 RKYHTS 106
++ H +
Sbjct: 96 KR-HQN 100
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 34.3 bits (80), Expect = 0.002
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIRKYHT 105
+ +Y C CGK + S L +H G K P ++C C Q +L H R HT
Sbjct: 14 RERRRYKCDECGKSFSHSSDLSKHRRTHTGEK-P-YKCDECGKAFIQRSHLIGHHRV-HT 70
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 34.2 bits (79), Expect = 0.002
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
Query: 38 PNPKYVRTTQENQYSC--QHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGN 95
N + Y+C + C +R+ L RH G K QC C +S +
Sbjct: 7 NNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKP--FQCRICMRNFSRSDH 64
Query: 96 LRVHIRKYHT 105
L HIR HT
Sbjct: 65 LTTHIRT-HT 73
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 33.3 bits (77), Expect = 0.002
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T E Y+C+ CGK +RW S L +H
Sbjct: 8 TGEKPYNCKECGKSFRWASCLLKH 31
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 35.5 bits (83), Expect = 0.003
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIRKYHT 105
T E Y+C CGK + + L+ H+ G K P ++CP C + NL H R HT
Sbjct: 101 TGEKPYACPECGKSFSQLAHLRAHQRTHTGEK-P-YKCPECGKSFSREDNLHTHQRT-HT 157
Score = 35.1 bits (82), Expect = 0.003
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 51 YSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIRKYHT 105
Y+C CGK + L H+ G K P ++CP C +L H R HT
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEK-P-YKCPECGKSFSDKKDLTRHQRT-HT 73
Score = 34.7 bits (81), Expect = 0.004
Identities = 25/60 (41%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIRKYHT 105
T E Y C CGK + K L RH+ G K P ++CP C Q NLR H R HT
Sbjct: 45 TGEKPYKCPECGKSFSDKKDLTRHQRTHTGEK-P-YKCPECGKSFSQRANLRAHQRT-HT 101
Score = 34.3 bits (80), Expect = 0.005
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIRKYHT 105
T E Y C CGK + + L H+ G K P ++CP C + L VH R HT
Sbjct: 129 TGEKPYKCPECGKSFSREDNLHTHQRTHTGEK-P-YKCPECGKSFSRRDALNVHQRT-HT 185
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 34.3 bits (80), Expect = 0.003
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIRKYHT 105
+ + Y CQ CGK + KS RH G + P + C C + K +L H++ HT
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLR-P-YGCGVCGKKFKMKHHLVGHMK-IHT 61
Score = 30.9 bits (71), Expect = 0.053
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIRKYHT 105
Y C CGK+++ K L H G K P ++C C R + H+ +
Sbjct: 33 LGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK-P-YECNICAKRFMWRDSFHRHV---TS 87
Score = 25.1 bits (56), Expect = 5.9
Identities = 2/21 (9%), Positives = 4/21 (19%)
Query: 46 TQENQYSCQHCGKRYRWKSTL 66
+ Y + S
Sbjct: 87 SCTKSYEAAKAEQNTTEASGP 107
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 34.9 bits (81), Expect = 0.004
Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 6/63 (9%)
Query: 46 TQENQYSCQH--CGKRYRWKSTLKRHEVFECGGK-EPVHQCPHCDYRAKQSGNLRVHIRK 102
TQ+ Y C H C KR+ S LKRHE G + C K H+ +
Sbjct: 130 TQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFV---GKTWTLYLKHVAE 186
Query: 103 YHT 105
H
Sbjct: 187 CHQ 189
Score = 33.7 bits (78), Expect = 0.009
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 51 YSC--QHCGKRYRWKSTLKRHEVFECGGKEPVHQC--PHCDYRAKQSGNLRVHIRKYHT 105
++C C R+ K+ +K+H K V+ C +C K+ L+VH HT
Sbjct: 73 FTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFS-HT 130
Score = 29.1 bits (66), Expect = 0.40
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 47 QENQYSC--QHCGKRYRWKSTLKRHEVFECGGKEPVHQCPH--CDYRAKQSGNLRVHIRK 102
+ Y C ++CGK ++ + LK H+ + ++CPH CD R L+ H +
Sbjct: 101 KICVYVCHFENCGKAFKKHNQLKVHQFSHTQ--QLPYECPHEGCDKRFSLPSRLKRHEKV 158
Query: 103 YHT 105
H
Sbjct: 159 -HA 160
Score = 28.3 bits (64), Expect = 0.67
Identities = 16/69 (23%), Positives = 20/69 (28%), Gaps = 17/69 (24%)
Query: 46 TQENQYSC--QHCGKRYRWKSTLKRHEV-------FECGGKEPVHQCPHCDYRAKQSGNL 96
+Y C CG Y L+ H F C KE C+ +L
Sbjct: 8 VVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPC--KE-----EGCEKGFTSLHHL 60
Query: 97 RVHIRKYHT 105
H HT
Sbjct: 61 TRHSL-THT 68
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 33.9 bits (79), Expect = 0.004
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIRKYHT 105
+ ++ C+ CG+ + L HE + P + C C ++ +LR H H+
Sbjct: 13 KTKKEFICKFCGRHFTKSYNLLIHERTHTDER-P-YTCDICHKAFRRQDHLRDHRY-IHS 69
Score = 29.3 bits (67), Expect = 0.16
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
++E + CQ CGK + TL H
Sbjct: 69 SKEKPFKCQECGKGFCQSRTLAVH 92
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 33.2 bits (77), Expect = 0.005
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIRKYHT 105
+ E Y C CGK + S L +H+ G K P ++C C Q+ L H R HT
Sbjct: 10 SGEKPYGCVECGKAFSRSSILVQHQRVHTGEK-P-YKCLECGKAFSQNSGLINHQR-IHT 66
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.005
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T E C CGK + WKS L H
Sbjct: 8 TGEKPCKCTECGKAFCWKSQLIMH 31
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 32.4 bits (74), Expect = 0.009
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 43 VRTTQENQYSCQH--CGKRYRWKSTLKRHEVFECGGKEPVHQC--PHCDYRAKQSGNLRV 98
+ +++ + C H CGK Y S LK H G K P C C+ R +S L
Sbjct: 10 IDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEK-P-FSCSWKGCERRFARSDELSR 67
Query: 99 HIRK 102
H R
Sbjct: 68 HRRT 71
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 33.2 bits (75), Expect = 0.010
Identities = 14/90 (15%), Positives = 25/90 (27%), Gaps = 31/90 (34%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH---------------EVFECGGKEP----------- 79
T +++ C+ C Y L H +P
Sbjct: 15 TGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGK 74
Query: 80 -----VHQCPHCDYRAKQSGNLRVHIRKYH 104
V +C +C + + +L VH+ K
Sbjct: 75 EDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 25.1 bits (54), Expect = 6.7
Identities = 5/32 (15%), Positives = 10/32 (31%)
Query: 51 YSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQ 82
C +CG + L H + ++
Sbjct: 81 LKCMYCGHSFESLQDLSVHMIKTKHYQKVSGP 112
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.4 bits (72), Expect = 0.012
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T E Y C CGK + WKS L+ H
Sbjct: 8 TGEKPYKCSDCGKSFTWKSRLRIH 31
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 31.4 bits (72), Expect = 0.013
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T E Y C+ CGK + + L H
Sbjct: 8 TGEKPYKCEECGKGFICRRDLYTH 31
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 31.0 bits (71), Expect = 0.013
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
+ E ++C CGK + + S L+ H
Sbjct: 8 SGEKSHTCDECGKNFCYISALRIH 31
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 31.4 bits (72), Expect = 0.013
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
+ Y CQ CGK + L H
Sbjct: 8 SVGKPYICQSCGKGFSRPDHLNGH 31
Score = 24.5 bits (54), Expect = 4.9
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 83 CPHCDYRAKQSGNLRVHIRKYHT 105
C C + +L HI++ HT
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHT 37
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 32.6 bits (73), Expect = 0.015
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 48 ENQYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIRKYHT 105
N C +C R+ + HE +C K+ C C K S ++ H + H
Sbjct: 40 RNAAVCPYCSLRFFSPELKQEHES-KCEYKK--LTCLECMRTFKSSFSIWRHQVEVHN 94
Score = 27.6 bits (60), Expect = 0.87
Identities = 11/65 (16%), Positives = 17/65 (26%), Gaps = 4/65 (6%)
Query: 38 PNPKYVRTTQENQYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLR 97
+ + Y C+ C + HE CP+C R +
Sbjct: 4 GSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLC----RNAAVCPYCSLRFFSPELKQ 59
Query: 98 VHIRK 102
H K
Sbjct: 60 EHESK 64
Score = 26.0 bits (56), Expect = 3.1
Identities = 5/26 (19%), Positives = 14/26 (53%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHEV 71
+ + +C C + ++ ++ RH+V
Sbjct: 65 CEYKKLTCLECMRTFKSSFSIWRHQV 90
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 31.0 bits (71), Expect = 0.016
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
E + C+ C + S+L+ H
Sbjct: 8 MGEKTWKCRECDMCFSQASSLRLH 31
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 32.1 bits (72), Expect = 0.017
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 41 KYVRTTQENQYSCQHCGKRYRWKSTLKRH 69
K++ ++ ++C HCGK+ R + +K H
Sbjct: 53 KHMENCKQEMFTCHHCGKQLRSLAGMKYH 81
Score = 29.1 bits (64), Expect = 0.20
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 42 YVRTTQENQYSCQHCGK-RYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHI 100
Y+ + SC C + LK+H + C K+ + C HC + + ++ H+
Sbjct: 26 YLEIVDKGSVSCPTCQAVGRKTIEGLKKH-MENC--KQEMFTCHHCGKQLRSLAGMKYHV 82
Query: 101 RKYHTS 106
H S
Sbjct: 83 MANHNS 88
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 31.0 bits (71), Expect = 0.017
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHE 70
+ E Y C CGK + WKS L HE
Sbjct: 8 SGEKPYECNECGKAFIWKSLLIVHE 32
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.9 bits (71), Expect = 0.018
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHE 70
T E + C CGK + +S L RH
Sbjct: 8 TGEKPFKCDICGKSFCGRSRLNRHS 32
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 30.6 bits (70), Expect = 0.019
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T + + C HCGK +R K L H
Sbjct: 8 TGQKPFECTHCGKSFRAKGNLVTH 31
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 31.8 bits (71), Expect = 0.022
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 47 QENQYSCQHCGKRYRWKST-LKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIRKYHT 105
+ + C C R LK+H C + +C HC + K L H H+
Sbjct: 21 ERGEAVCPTCNVVTRKTLVGLKKHME-VCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS 79
Query: 106 S 106
+
Sbjct: 80 A 80
Score = 29.1 bits (64), Expect = 0.21
Identities = 12/49 (24%), Positives = 20/49 (40%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSG 94
++ CQHC K+++ K+ L H + E K + SG
Sbjct: 50 KLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSDAEASEGGESGPSSG 98
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 30.6 bits (70), Expect = 0.022
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHE 70
+ + Y CQ CGK +R K +L HE
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHE 30
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 30.2 bits (69), Expect = 0.026
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHE 70
N Y C C K + K L H+
Sbjct: 8 AGVNPYKCSQCEKSFSGKLRLLVHQ 32
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.027
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T E Y C C K +R+ S+L H
Sbjct: 8 TGEKPYKCDVCHKSFRYGSSLTVH 31
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.028
Identities = 15/109 (13%), Positives = 28/109 (25%), Gaps = 31/109 (28%)
Query: 16 FPRGVF--TAALSTLARFHWLNWDPNPKYVRTTQENQYSCQHCGKRYRWKSTLKRHEVFE 73
FP T LS + W + + K S +++
Sbjct: 381 FPPSAHIPTILLSLI----WFD--------VIKSDVMVVVNKLHK----YSLVEKQ---- 420
Query: 74 CGGKEP---VHQCPHCDYRAKQSGNLRVH---IRKYHTSIELQSPSPAP 116
KE + + + + K +H + Y+ S P
Sbjct: 421 --PKESTISIPSI-YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 30.2 bits (69), Expect = 0.028
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
E Y C+ CG R+ + L+ H
Sbjct: 7 GGEKPYKCETCGARFVQVAHLRAH 30
Score = 24.4 bits (54), Expect = 3.2
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 81 HQCPHCDYRAKQSGNLRVHIRKYHT 105
++C C R Q +LR H+ HT
Sbjct: 12 YKCETCGARFVQVAHLRAHVL-IHT 35
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.030
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHE 70
T E Y+C+ CGK + L +HE
Sbjct: 8 TGEKLYNCKECGKSFSRAPCLLKHE 32
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 30.2 bits (67), Expect = 0.032
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 81 HQCPHCDYRAKQSGNLRVHIRKY 103
++CP C Y + NL VH+RK+
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKH 32
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.034
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
+ + Y C+ C K + L +H
Sbjct: 8 SGKKPYECKECRKTFIQIGHLNQH 31
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 30.3 bits (68), Expect = 0.035
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 47 QENQYSCQHCGKRYRWKSTLKRHE 70
Q +C+ CGK +R L RH+
Sbjct: 9 TRKQVACEICGKIFRDVYHLNRHK 32
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.037
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
+ E Y C+ CGK Y + L H
Sbjct: 8 SVEKPYKCEDCGKGYNRRLNLDMH 31
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.037
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T E Y C CGK +R S L RH
Sbjct: 8 TGEKPYKCNECGKVFRHNSYLSRH 31
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 29.8 bits (68), Expect = 0.039
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T EN Y C CGK + K L H
Sbjct: 8 TGENPYECCECGKVFSRKDQLVSH 31
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.042
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T E Y CQ CGK +R S L +H
Sbjct: 8 TGEKPYKCQVCGKAFRVSSHLVQH 31
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 29.8 bits (68), Expect = 0.044
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHE 70
T Y C CGK +R KS L H
Sbjct: 8 TGMKPYVCNECGKAFRSKSYLIIHT 32
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 29.6 bits (67), Expect = 0.044
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 48 ENQYSCQHCGKRYRWKSTLKRHE 70
E Y C CGK + + +L H+
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQ 31
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.051
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T E Y C CGK +R S L H
Sbjct: 8 TGEKPYKCNECGKAFRAHSNLTTH 31
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.052
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHE 70
T E Y C CGK +R +S+L H+
Sbjct: 8 TGEKPYKCNECGKAFRARSSLAIHQ 32
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.056
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T E Y+C+ CGK + S L+ H
Sbjct: 8 TGEKPYNCEECGKAFIHDSQLQEH 31
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.060
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T E Y C CGK + +S L +H
Sbjct: 8 TGEKPYICAECGKAFTIRSNLIKH 31
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.060
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
E Y C CGK + L +H
Sbjct: 8 EGEKPYQCSECGKSFSGSYRLTQH 31
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 29.4 bits (67), Expect = 0.063
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
+ + C CG+ + KS L +H
Sbjct: 8 SSTKSHQCHECGRGFTLKSHLNQH 31
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.068
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T E Y C+ CGK Y K L H
Sbjct: 8 TGEKPYKCEKCGKGYNSKFNLDMH 31
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 29.2 bits (66), Expect = 0.068
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHE 70
+ E YSC C + + + L +H+
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQ 30
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 29.0 bits (64), Expect = 0.069
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 81 HQCPHCDYRAKQSGNLRVHIRKYHT 105
+QC +C++R+ S NL+ HI+ H+
Sbjct: 3 YQCQYCEFRSADSSNLKTHIKTKHS 27
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.070
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
+ E Y C +CGK + + L RH
Sbjct: 8 SGEKPYVCDYCGKAFGLSAELVRH 31
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.075
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
+ E Y C CGK Y+ + L H
Sbjct: 8 SGEKPYKCVECGKGYKRRLDLDFH 31
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 30.0 bits (67), Expect = 0.078
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHEVFEC 74
+ C CG + +STL R + C
Sbjct: 14 LGDRSQKCSKCGIIFIRRSTLSRRKTPMC 42
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 29.1 bits (66), Expect = 0.078
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
+ E + C+ CGK + S H
Sbjct: 8 SGEKPFKCEECGKGFYTNSQCYSH 31
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 30.3 bits (68), Expect = 0.083
Identities = 14/71 (19%), Positives = 19/71 (26%), Gaps = 16/71 (22%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH-----------EVFECGGKEPVHQCPHCDYRAKQSG 94
+ + C + + L H C +E CP K
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEE----CPREGKSFKAKY 76
Query: 95 NLRVHIRKYHT 105
L HIR HT
Sbjct: 77 KLVNHIRV-HT 86
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.085
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
+ E + C+ CGK +R L H
Sbjct: 8 SGEKPFKCKECGKAFRQNIHLASH 31
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.087
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T Y C CGK + S+L H
Sbjct: 8 TGVKPYMCNECGKAFSVYSSLTTH 31
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.7 bits (65), Expect = 0.099
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHE 70
T E Y C CGK + S+ +H+
Sbjct: 8 TGEKPYKCMECGKAFGDNSSCTQHQ 32
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.100
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T EN + C CGK + K+ L H
Sbjct: 8 TGENPFICSECGKVFTHKTNLIIH 31
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 28.7 bits (65), Expect = 0.10
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
+ E + C C K + KS L H
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVH 29
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.10
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
+ E + C+ CGKR+ S L H
Sbjct: 8 SGEKPFKCEECGKRFTQNSQLHSH 31
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.10
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T EN Y C CGK + K L H
Sbjct: 8 TGENPYECHECGKAFSRKYQLISH 31
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.11
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T E YSC CGK + + L +H
Sbjct: 8 TGEKPYSCNVCGKAFVLSAHLNQH 31
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 28.6 bits (65), Expect = 0.11
Identities = 11/37 (29%), Positives = 13/37 (35%), Gaps = 7/37 (18%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHEV-------FECG 75
T E Y C C K + KS L H+ G
Sbjct: 8 TGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG 44
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.12
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T E Y C CGK + +S L +H
Sbjct: 8 TGERPYICTVCGKAFTDRSNLIKH 31
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 28.7 bits (65), Expect = 0.12
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
+ E + C CGK + +S L H
Sbjct: 8 SGERPFKCNECGKGFGRRSHLAGH 31
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.12
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T E Y C CGK + KS L RH
Sbjct: 8 TGEKPYICNECGKSFIQKSHLNRH 31
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.7 bits (65), Expect = 0.12
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
+ E Y C CGK + KS L H
Sbjct: 8 SGEKPYGCNECGKTFSQKSILSAH 31
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 28.6 bits (65), Expect = 0.12
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T E + C CGK + S L H
Sbjct: 8 TGEKPFECAECGKSFSISSQLATH 31
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.12
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T E Y C CGK + S L RH
Sbjct: 8 TGEKPYKCNECGKVFTQNSHLARH 31
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.7 bits (65), Expect = 0.12
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T E + C+ CGK + + S L H
Sbjct: 8 TGEKPHECRECGKSFSFNSQLIVH 31
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 28.7 bits (65), Expect = 0.12
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T + Y C CGK ++ KS+L H
Sbjct: 8 TGQRPYECIECGKAFKTKSSLICH 31
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.13
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHE 70
+ E Y C CGK + S L H
Sbjct: 8 SGERPYGCNECGKNFGRHSHLIEHL 32
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.13
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T E Y C CGK +R S L RH
Sbjct: 8 TGEKPYKCHECGKVFRRNSHLARH 31
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 28.3 bits (64), Expect = 0.14
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T + Y C CGK + ++L RH
Sbjct: 8 TGKKPYECIECGKAFIQNTSLIRH 31
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 28.3 bits (64), Expect = 0.14
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
E + C CGK + S +H
Sbjct: 8 HGERGHRCSDCGKFFLQASNFIQH 31
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.15
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T E Y C+ C K + K+ L +H
Sbjct: 8 TGEKPYECKVCSKAFTQKAHLAQH 31
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 28.2 bits (64), Expect = 0.15
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHE 70
+ EN Y C CGK + K L H+
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQ 30
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.15
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T E Y C CGK + S L RH
Sbjct: 8 TGEKPYKCNECGKVFTQNSHLARH 31
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.15
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T E Y C CGK + KSTL H
Sbjct: 8 TGERHYECSECGKAFIQKSTLSMH 31
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.15
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T + Y C CGK + S L RH
Sbjct: 8 TGKKPYKCNECGKVFTQNSHLARH 31
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.15
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
+ E + C+ CGKR+ S L H
Sbjct: 8 SGEKPFQCEECGKRFTQNSHLHSH 31
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 28.3 bits (64), Expect = 0.16
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T Y+C CGK + L RH
Sbjct: 8 TDSKSYNCNECGKAFTRIFHLTRH 31
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.17
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T E + C C K + KS L H
Sbjct: 8 TGEKPFECSECQKAFNTKSNLIVH 31
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.17
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T E + C CGK Y + L +H
Sbjct: 8 TGEKPFKCGECGKSYNQRVHLTQH 31
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.18
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T + C CGK + KSTL H
Sbjct: 8 TGGKHFECTECGKAFTRKSTLSMH 31
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.18
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T E Y C CGK + K+ L +H
Sbjct: 8 TGEKPYRCGECGKAFAQKANLTQH 31
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.19
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHE 70
T E + C CGK + L +H
Sbjct: 8 TGEKPFDCIDCGKAFSDHIGLNQHR 32
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces
cerevisiae} SCOP: c.31.1.5
Length = 361
Score = 30.4 bits (68), Expect = 0.21
Identities = 8/36 (22%), Positives = 11/36 (30%), Gaps = 6/36 (16%)
Query: 52 SCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCD 87
C CGK Y + + P+ CD
Sbjct: 146 HCIGCGKVYPPQ------VFKSKLAEHPIKDFVKCD 175
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.21
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T E Y C CGK + KS L H
Sbjct: 8 TGEKPYKCSDCGKAFTRKSGLHIH 31
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 27.9 bits (63), Expect = 0.21
Identities = 9/24 (37%), Positives = 10/24 (41%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T Y C C K + KS L H
Sbjct: 8 TGVKPYGCSQCAKTFSLKSQLIVH 31
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.22
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T E Y C CGK + +S L H
Sbjct: 8 TGEKPYRCAECGKAFTDRSNLFTH 31
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family;
enzyme-substrate complex, protein binding,
transcription; HET: ALY MES; 2.00A {Archaeoglobus
fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Length = 253
Score = 29.8 bits (68), Expect = 0.23
Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 6/35 (17%)
Query: 53 CQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCD 87
C C + Y W E E K + +C C
Sbjct: 126 CLDCHETYDWS------EFVEDFNKGEIPRCRKCG 154
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.25
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T E Y C C K + ++L +H
Sbjct: 8 TGEKPYECDVCRKAFSHHASLTQH 31
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.26
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T Y C CGK + S L RH
Sbjct: 8 TGGKPYQCNECGKAFSQTSKLARH 31
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.8 bits (63), Expect = 0.26
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T E Y C CGK + KSTL H
Sbjct: 8 TGERHYECSECGKAFARKSTLIMH 31
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 27.5 bits (62), Expect = 0.26
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T E + C CGK + +S L H
Sbjct: 8 TGEKPFKCVECGKGFSRRSALNVH 31
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 27.9 bits (61), Expect = 0.26
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHEVFECGGK 77
++E + C+ CG+ + +L H+V G K
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.8 bits (63), Expect = 0.26
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T E Y C CGK + S L RH
Sbjct: 8 TGEKPYKCNECGKVFTQNSHLVRH 31
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.27
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHE 70
T E Y C CGK + +S+L H+
Sbjct: 8 TGEKPYECNQCGKAFSVRSSLTTHQ 32
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.27
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
+ E Y C CGK + S L H
Sbjct: 8 SGEKPYKCNECGKVFTQNSHLTNH 31
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 27.5 bits (62), Expect = 0.27
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T E Y C+ CGK + + L +H
Sbjct: 8 TGEKPYECKECGKAFSQTTHLIQH 31
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.28
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T E Y C CGK + KS L H
Sbjct: 8 TGEKPYECSDCGKSFIKKSQLHVH 31
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP
ribose,, gene regulation; HET: ALY OAD; 1.50A
{Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A*
1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Length = 289
Score = 29.7 bits (67), Expect = 0.29
Identities = 8/36 (22%), Positives = 11/36 (30%), Gaps = 6/36 (16%)
Query: 52 SCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCD 87
C CGK Y + + P+ CD
Sbjct: 138 HCIGCGKVYPPQ------VFKSKLAEHPIKDFVKCD 167
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.29
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T E Y C CGK + S L RH
Sbjct: 8 TGEKPYKCNECGKAFSQTSKLARH 31
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.30
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T E Y C CGK + KS L H
Sbjct: 8 TGEKPYECSICGKSFTKKSQLHVH 31
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.5 bits (60), Expect = 0.32
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHEV 71
+ + C CGK+++ K TLK H++
Sbjct: 5 SSGKTHLCDMCGKKFKSKGTLKSHKL 30
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.33
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T E Y C CGK + S L H
Sbjct: 8 TGEKPYKCNECGKVFTQNSHLANH 31
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.35
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHE 70
E Y C CGK + KS L H
Sbjct: 8 AGEKPYGCSECGKAFSSKSYLIIHM 32
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.36
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
E Y C CGK + S L+ H
Sbjct: 8 MGEKCYKCDVCGKEFSQSSHLQTH 31
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.37
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
+ + C C K + S+L H
Sbjct: 8 AGKKLFKCNECKKTFTQSSSLTVH 31
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.39
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T E Y C CGK + + +L H
Sbjct: 8 TGEKPYECSVCGKAFSHRQSLSVH 31
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 27.1 bits (61), Expect = 0.39
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
E Y C CGK + K +L H
Sbjct: 7 GGEKPYRCDQCGKAFSQKGSLIVH 30
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.40
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
+ E Y C CGK + + L H
Sbjct: 8 SGEKPYKCSECGKAFHRHTHLNEH 31
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 66
Score = 27.6 bits (61), Expect = 0.49
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 52 SCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPH-CDYRAKQSGNLRVHIRK 102
C +C K + + T++ H+ ++C + PV CP+ C +L H++
Sbjct: 12 PCTYCTKEFVFD-TIQSHQ-YQC-PRLPV-ACPNQCGVGTVAREDLPGHLKD 59
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.52
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T E + C CGK + + L +H
Sbjct: 8 TGERPHKCNECGKSFIQSAHLIQH 31
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 26.7 bits (60), Expect = 0.55
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
T E +Y C CGK + S L +H
Sbjct: 8 TGEKRYKCNECGKVFSRNSQLSQH 31
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 26.7 bits (59), Expect = 0.55
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 48 ENQYSCQHCGKRYRWKSTLKRHEVFECGGKEP 79
EN + C C + + ++ L +HE P
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTHARKSGP 41
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 27.1 bits (59), Expect = 0.57
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 47 QENQYSCQHCGKRYRWKSTLKRH 69
++ Y+C CGKRY+ + L H
Sbjct: 4 RDKPYACDICGKRYKNRPGLSYH 26
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase,
single analysis, thermoalkaliphilic, hydrolase; 3.06A
{Bacillus SP} PDB: 1sky_B
Length = 502
Score = 28.8 bits (65), Expect = 0.61
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 107 IELQSPSPAPRKPIVNPMQT 126
IE +P RK + P+QT
Sbjct: 129 IESPAPGVMDRKSVHEPLQT 148
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability,
potential tentoxin binding hydrolase; 3.20A {Spinacia
oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Length = 507
Score = 28.8 bits (65), Expect = 0.65
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 107 IELQSPSPAPRKPIVNPMQT 126
IE +P R+ + P+QT
Sbjct: 130 IESPAPGIMSRRSVYEPLQT 149
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent
deacetylase, sirtuin, substrate peptide comple
hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens}
PDB: 3gls_A 3glt_A* 3glu_A
Length = 285
Score = 28.5 bits (64), Expect = 0.76
Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 6/40 (15%)
Query: 52 SCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAK 91
+C C + + + ++ + V +CP C K
Sbjct: 141 TCTVCQRPFPGE------DIRADVMADRVPRCPVCTGVVK 174
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for
structural genomics, JCSG, protein structure initiative
ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima
MSB8}
Length = 515
Score = 28.4 bits (64), Expect = 0.82
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 107 IELQSPSPAPRKPIVNPMQT 126
IE+++P RKP+ P+QT
Sbjct: 142 IEIKAPGVIYRKPVDTPLQT 161
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 26.4 bits (57), Expect = 0.85
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 43 VRTTQENQYSCQHCGKRYRWKSTLKRHEVFECGGKEP 79
+TT E CQ CGK +R S L H+ G P
Sbjct: 9 AKTTSE----CQECGKIFRHSSLLIEHQALHAGESGP 41
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP
ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A*
1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A*
2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Length = 510
Score = 28.4 bits (64), Expect = 0.95
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 107 IELQSPSPAPRKPIVNPMQT 126
+ L++P PR + PMQT
Sbjct: 129 VGLKAPGIIPRISVREPMQT 148
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin,
acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ;
1.85A {Saccharomyces cerevisiae}
Length = 354
Score = 27.9 bits (62), Expect = 1.3
Identities = 11/76 (14%), Positives = 22/76 (28%), Gaps = 10/76 (13%)
Query: 52 SCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCD----YRAKQSGNLRVHIRKYHTSI 107
+C C +F + CP+C + N +V + S+
Sbjct: 163 TCVTCHWNL------PGERIFNKIRNLELPLCPYCYKKRREYFPEGYNNKVGVAASQGSM 216
Query: 108 ELQSPSPAPRKPIVNP 123
+ P ++ P
Sbjct: 217 SERPPYILNSYGVLKP 232
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase,
hydrolase-transport PROT complex; HET: ANP ADP; 3.26A
{Escherichia coli DH1} PDB: 2a7u_A
Length = 513
Score = 28.0 bits (63), Expect = 1.3
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 107 IELQSPSPAPRKPIVNPMQT 126
+E +P R+ + P+QT
Sbjct: 129 VEAIAPGVIERQSVDQPVQT 148
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 25.5 bits (55), Expect = 1.4
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 51 YSCQHCGKRYRWKSTLKRHEVFECGGK 77
Y C HC +++ L+RH G K
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHTGEK 30
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding
domain, structural genomics, struc genomics consortium,
SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Length = 318
Score = 27.7 bits (62), Expect = 1.5
Identities = 5/37 (13%), Positives = 7/37 (18%), Gaps = 3/37 (8%)
Query: 53 CQHCGKRY---RWKSTLKRHEVFECGGKEPVHQCPHC 86
C C +Y T+ C
Sbjct: 141 CAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRAC 177
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue,
hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP:
c.31.1.5
Length = 235
Score = 27.5 bits (62), Expect = 1.5
Identities = 8/48 (16%), Positives = 11/48 (22%), Gaps = 15/48 (31%)
Query: 53 CQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHI 100
C G+ W + E C LR H+
Sbjct: 116 CSQSGQVLDWTGDVTP---------EDKCHCCQFP------APLRPHV 148
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural
genomics, riken structural genomics/proteomics in RSGI;
HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Length = 392
Score = 27.5 bits (60), Expect = 1.5
Identities = 5/44 (11%), Positives = 13/44 (29%)
Query: 80 VHQCPHCDYRAKQSGNLRVHIRKYHTSIELQSPSPAPRKPIVNP 123
+ C +C R + + + H + P + +
Sbjct: 244 IQYCFNCMNREVVTDLYKFKEKCPHCGSKFHIGGPLWIGKLWDE 287
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural
genomics, structural genomics consortium, SGC,
hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Length = 355
Score = 27.4 bits (61), Expect = 1.6
Identities = 5/37 (13%), Positives = 7/37 (18%), Gaps = 3/37 (8%)
Query: 53 CQHCGKRY---RWKSTLKRHEVFECGGKEPVHQCPHC 86
C C +Y T+ C
Sbjct: 141 CAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRAC 177
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 27.5 bits (62), Expect = 1.6
Identities = 7/15 (46%), Positives = 9/15 (60%), Gaps = 1/15 (6%)
Query: 73 ECGGKEPVHQCPHCD 87
E GK + CP+CD
Sbjct: 127 EYYGKS-LFSCPYCD 140
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 25.0 bits (55), Expect = 1.7
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 50 QYSCQHCGKRYRWKSTLKRHE 70
+ C+ C + + + LKRH
Sbjct: 2 SFVCEVCTRAFARQEHLKRHY 22
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 27.6 bits (61), Expect = 1.7
Identities = 5/24 (20%), Positives = 9/24 (37%), Gaps = 2/24 (8%)
Query: 9 LSGFAFFFPRGVFTAALSTLARFH 32
L G P TA + ++ +
Sbjct: 3106 LGGL--LNPEAYITATRQSASQLN 3127
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 25.3 bits (54), Expect = 1.8
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 77 KEPVHQCPHCDYRAKQSGNLRVHIRKYHTSIELQSPSPA 115
E + CP C R K+ + H+R + S+ PS
Sbjct: 7 GEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG 45
Score = 24.5 bits (52), Expect = 4.0
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHEVFECGG 76
+ E YSC CG R++ K + H G
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 36
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1,
nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga
maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A*
2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A*
2h4h_A* 3jr3_A* 2h59_A*
Length = 246
Score = 27.1 bits (61), Expect = 1.8
Identities = 8/34 (23%), Positives = 11/34 (32%), Gaps = 6/34 (17%)
Query: 53 CQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHC 86
C C K+Y +V + V C C
Sbjct: 124 CVRCEKKY------TVEDVIKKLESSDVPLCDDC 151
>1m2k_A Silent information regulator 2; protein-ligand complex, gene
regulation; HET: APR; 1.47A {Archaeoglobus fulgidus}
SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A*
1ici_A*
Length = 249
Score = 27.1 bits (61), Expect = 1.9
Identities = 9/48 (18%), Positives = 14/48 (29%), Gaps = 15/48 (31%)
Query: 53 CQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHI 100
C C + +S K P+ +C C LR +
Sbjct: 124 CTSCNNSFEVESAPKI---------PPLPKCDKCG------SLLRPGV 156
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 27.1 bits (59), Expect = 2.1
Identities = 2/37 (5%), Positives = 6/37 (16%)
Query: 38 PNPKYVRTTQENQYSCQHCGKRYRWKSTLKRHEVFEC 74
E + + + L+
Sbjct: 196 ETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSV 232
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 27.1 bits (59), Expect = 2.5
Identities = 5/27 (18%), Positives = 7/27 (25%)
Query: 44 RTTQENQYSCQHCGKRYRWKSTLKRHE 70
+ + Y C C L H
Sbjct: 174 TASSGHGYQCHVCSAVLFSPLDLDAHV 200
Score = 26.4 bits (57), Expect = 5.3
Identities = 8/60 (13%), Positives = 18/60 (30%)
Query: 76 GKEPVHQCPHCDYRAKQSGNLRVHIRKYHTSIELQSPSPAPRKPIVNPMQTQQQASNLST 135
+QC C +L H+ + + S ++ I + + Q +
Sbjct: 176 SSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRHITEFISSWQNHPIVQV 235
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 24.6 bits (54), Expect = 2.9
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 76 GKEPVHQCPH--CDYRAKQSGNLRVHIRKYHT 105
GK+ H C C ++ +LR H+R HT
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRW-HT 34
Score = 23.9 bits (52), Expect = 4.8
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 43 VRTTQENQYSCQH--CGKRYRWKSTLKRH 69
+ ++ Q+ C CGK Y S L+ H
Sbjct: 1 MDPGKKKQHICHIQGCGKVYGKTSHLRAH 29
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.4 bits (52), Expect = 3.2
Identities = 6/24 (25%), Positives = 16/24 (66%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRH 69
+ ++C++C K +++K +L+ H
Sbjct: 5 SSGKIFTCEYCNKVFKFKHSLQAH 28
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 24.4 bits (53), Expect = 4.1
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 41 KYVRTTQENQYSCQH--CGKRYRWKSTLKRH 69
KYV+ + + C C K ++ + ++ H
Sbjct: 9 KYVKEMPDKTFECLFPGCTKTFKRRYNIRSH 39
>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1
Length = 88
Score = 25.2 bits (54), Expect = 4.5
Identities = 9/44 (20%), Positives = 22/44 (50%)
Query: 79 PVHQCPHCDYRAKQSGNLRVHIRKYHTSIELQSPSPAPRKPIVN 122
+QC HCD + + + L H+ ++ + ++ RK +++
Sbjct: 24 STYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQERRKQLLS 67
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 25.8 bits (56), Expect = 4.5
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 50 QYSCQHCGKRYRWKSTLKRHE 70
+ C C + + + LK H
Sbjct: 50 LHRCLACARYFIDSTNLKTHF 70
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 24.0 bits (51), Expect = 4.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 51 YSCQHCGKRYRWKSTLKRH 69
YSC CGKR+ K ++ H
Sbjct: 4 YSCSVCGKRFSLKHQMETH 22
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue;
Zn-binding domain, rossmann fold domain; HET: MYK NAD;
2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Length = 290
Score = 26.1 bits (58), Expect = 4.8
Identities = 7/48 (14%), Positives = 12/48 (25%), Gaps = 9/48 (18%)
Query: 53 CQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHI 100
C C K + + + P C G + +I
Sbjct: 157 CCTCNKIVKLNKIMLQKTSHFMHQLPP---ECPCG------GIFKPNI 195
>3m73_A Tellurite resistance protein TEHA homolog; anion channel, alpha
helical integral membrane protein, STRU genomics, PSI-2;
HET: BOG; 1.15A {Haemophilus influenzae} PDB: 3m75_A*
3m74_A* 3m77_A* 3m71_A* 3m7b_A* 3m7c_A* 3m7e_A* 3m7l_A*
3m78_A* 3m76_A* 3m72_A*
Length = 314
Score = 26.0 bits (57), Expect = 4.8
Identities = 3/29 (10%), Positives = 9/29 (31%)
Query: 8 SLSGFAFFFPRGVFTAALSTLARFHWLNW 36
++ +AF + + + L
Sbjct: 254 NIGLWAFSAGLASMANSATAFYHGNVLQG 282
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 24.2 bits (53), Expect = 5.9
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 46 TQENQYSCQH--CGKRYRWKSTLKRH 69
T E ++C CG R+ L RH
Sbjct: 8 TGEKPFACTWPGCGWRFSRSDELSRH 33
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination,
hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9
PDB: 1nbf_A
Length = 353
Score = 25.6 bits (56), Expect = 7.3
Identities = 3/12 (25%), Positives = 6/12 (50%)
Query: 48 ENQYSCQHCGKR 59
+N+Y G +
Sbjct: 169 DNKYDAGEHGLQ 180
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 23.7 bits (50), Expect = 7.6
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 82 QCPHCDYRAKQSGNLRVHIRKYHT 105
+C C+Y + NL+ H+ ++ T
Sbjct: 11 KCSLCEYATRSKSNLKAHMNRHST 34
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc
finger, gene regulation; NMR {Agrobacterium
tumefaciens}
Length = 87
Score = 24.4 bits (53), Expect = 8.4
Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
Query: 44 RTTQENQYSCQHCGKRYRWKSTLKRH 69
++ Q++ C CG ++ +LKRH
Sbjct: 15 KSVQDDHIVCLECGGSFK---SLKRH 37
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP,
deubiquitinating enzyme, substrate recognition; 3.20A
{Homo sapiens}
Length = 522
Score = 25.3 bits (55), Expect = 9.7
Identities = 3/12 (25%), Positives = 6/12 (50%)
Query: 48 ENQYSCQHCGKR 59
+N+Y G +
Sbjct: 338 DNKYDAGEHGLQ 349
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO
zinc finger, beta-BETA- alpha fold, coiled coil,
cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Length = 28
Score = 23.2 bits (49), Expect = 9.8
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 83 CPHCDYRAKQSGNLRVHI 100
CP C Y+A L++H+
Sbjct: 6 CPKCQYQAPDMDTLQIHV 23
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix
bundle, rubre like, electron transport; 1.63A
{Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB:
1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A
1ryt_A
Length = 191
Score = 25.1 bits (54), Expect = 9.8
Identities = 8/60 (13%), Positives = 16/60 (26%), Gaps = 14/60 (23%)
Query: 32 HWLNWDPNPKYVRTTQENQYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAK 91
+ + Q ++ C++CG + G CP C +
Sbjct: 137 DFARNIKEGRVFLREQATKWRCRNCG--------------YVHEGTGAPELCPACAHPKA 182
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.131 0.427
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,179,739
Number of extensions: 111743
Number of successful extensions: 643
Number of sequences better than 10.0: 1
Number of HSP's gapped: 554
Number of HSP's successfully gapped: 260
Length of query: 145
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 60
Effective length of database: 4,328,508
Effective search space: 259710480
Effective search space used: 259710480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.7 bits)