RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16400
(145 letters)
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 43.9 bits (103), Expect = 1e-07
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 48 ENQYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIR 101
+ Y CQ CGK + KS RH + C C + K +L H++
Sbjct: 1 DKLYPCQ-CGKSFTHKSQRDRHMSMHL--GLRPYGCGVCGKKFKMKHHLVGHMK 51
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 36.1 bits (84), Expect = 5e-05
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHE 70
+ E Y C CGK + S L +H+
Sbjct: 3 SGEKPYGCVECGKAFSRSSILVQHQ 27
Score = 29.1 bits (66), Expect = 0.019
Identities = 8/25 (32%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 81 HQCPHCDYRAKQSGNLRVHIRKYHT 105
+ C C +S L H R HT
Sbjct: 8 YGCVECGKAFSRSSILVQHQRV-HT 31
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 35.0 bits (81), Expect = 2e-04
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHE 70
+ E Y C C R+ T+K H
Sbjct: 4 SGEKPYECYICHARFTQSGTMKMHI 28
Score = 34.2 bits (79), Expect = 3e-04
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 81 HQCPHCDYRAKQSGNLRVHIRKYHT 105
++C C R QSG +++HI + HT
Sbjct: 9 YECYICHARFTQSGTMKMHILQKHT 33
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 34.6 bits (80), Expect = 2e-04
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHE 70
T E Y+C HC K +R K L H
Sbjct: 4 TGEKPYACSHCDKTFRQKQLLDMHF 28
Score = 29.3 bits (66), Expect = 0.021
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 81 HQCPHCDYRAKQSGNLRVHIRKYH 104
+ C HCD +Q L +H ++YH
Sbjct: 9 YACSHCDKTFRQKQLLDMHFKRYH 32
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 34.6 bits (80), Expect = 2e-04
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 81 HQCPHCDYRAKQSGNLRVHIRKYHT 105
+ C C + +L HI++ HT
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHT 30
Score = 34.2 bits (79), Expect = 4e-04
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 51 YSCQHCGKRYRWKSTLKRHE 70
Y CQ CGK + L H
Sbjct: 6 YICQSCGKGFSRPDHLNGHI 25
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 33.7 bits (78), Expect = 4e-04
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 48 ENQYSCQHCGKRYRWKSTLKRHE 70
+ + C+ C + + L H
Sbjct: 1 QKPFQCRICMRNFSRSDHLTTHI 23
Score = 27.2 bits (61), Expect = 0.11
Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 81 HQCPHCDYRAKQSGNLRVHIRKYHT 105
QC C +S +L HIR HT
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRT-HT 27
>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 33.5 bits (76), Expect = 6e-04
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 81 HQCPHCDYRAKQSGNLRVHIRKYHT 105
CPHCD + +L VH+RK H+
Sbjct: 3 FHCPHCDTVIARKSDLGVHLRKQHS 27
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 33.1 bits (76), Expect = 7e-04
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 51 YSCQHCGKRYRWKSTLKRHE 70
++C C KR+ L +H
Sbjct: 3 FACPECPKRFMRSDHLSKHI 22
Score = 28.8 bits (65), Expect = 0.028
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 81 HQCPHCDYRAKQSGNLRVHIRKYHT 105
CP C R +S +L HI+ H
Sbjct: 3 FACPECPKRFMRSDHLSKHIKT-HQ 26
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 33.0 bits (76), Expect = 7e-04
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 51 YSCQHCGKRYRWKSTLKRHE 70
+ C+ C + + + LKRH
Sbjct: 3 FVCEVCTRAFARQEHLKRHY 22
Score = 28.7 bits (65), Expect = 0.031
Identities = 7/25 (28%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 81 HQCPHCDYRAKQSGNLRVHIRKYHT 105
C C + +L+ H R HT
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRS-HT 26
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 31.2 bits (71), Expect = 0.004
Identities = 5/25 (20%), Positives = 8/25 (32%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHE 70
T + C C + + L H
Sbjct: 7 TGIKPFQCPDCDRSFSRSDHLALHR 31
Score = 23.9 bits (52), Expect = 1.6
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 81 HQCPHCDYRAKQSGNLRVHIRKYHTSI 107
QCP CD +S +L +H ++ H +
Sbjct: 12 FQCPDCDRSFSRSDHLALHRKR-HMLV 37
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 30.9 bits (69), Expect = 0.005
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 81 HQCPHCDYRAKQSGNLRVHIRKYHT 105
+QC +C++R+ S NL+ HI+ H+
Sbjct: 3 YQCQYCEFRSADSSNLKTHIKTKHS 27
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 30.3 bits (69), Expect = 0.008
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 51 YSCQHCGKRYRWKSTLKRHE 70
Y C CGK + S L H+
Sbjct: 3 YKCLECGKAFSQNSGLINHQ 22
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 30.1 bits (68), Expect = 0.009
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHE 70
+ + + C+ C + K+ RH
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHL 27
Score = 25.5 bits (56), Expect = 0.48
Identities = 6/28 (21%), Positives = 9/28 (32%), Gaps = 1/28 (3%)
Query: 78 EPVHQCPHCDYRAKQSGNLRVHIRKYHT 105
+ C C N H++ HT
Sbjct: 5 KRPFVCRICLSAFTTKANCARHLKV-HT 31
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 29.7 bits (67), Expect = 0.016
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHE 70
+ +Y C CGK + S L +H
Sbjct: 8 RERRRYKCDECGKSFSHSSDLSKHR 32
Score = 24.7 bits (54), Expect = 1.0
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 68 RHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIRKYHT 105
R E + + ++C C S +L H R HT
Sbjct: 2 RSEWQQRERRR--YKCDECGKSFSHSSDLSKHRRT-HT 36
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 29.2 bits (66), Expect = 0.021
Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 51 YSCQH--CGKRYRWKSTLKRHE 70
+ C CGKR+ L+RH+
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHK 24
Score = 23.8 bits (52), Expect = 1.9
Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 8/34 (23%)
Query: 72 FECGGKEPVHQCPHCDYRAKQSGNLRVHIRKYHT 105
F C C R +S L+ H R HT
Sbjct: 3 FMCTWSY-------CGKRFTRSDELQRHKRT-HT 28
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 30
Score = 28.1 bits (63), Expect = 0.058
Identities = 7/22 (31%), Positives = 8/22 (36%), Gaps = 2/22 (9%)
Query: 51 YSCQH--CGKRYRWKSTLKRHE 70
+ C C K Y LK H
Sbjct: 3 HKCTFEGCRKSYSRLENLKTHL 24
Score = 23.1 bits (50), Expect = 3.5
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 81 HQCPH--CDYRAKQSGNLRVHIRKYHT 105
H+C C + NL+ H+R HT
Sbjct: 3 HKCTFEGCRKSYSRLENLKTHLRS-HT 28
>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 27.7 bits (61), Expect = 0.074
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 82 QCPHCDYRAKQSGNLRVHIRKYH 104
+C +C + KQ NL H++K+H
Sbjct: 4 KCNYCSFDTKQPSNLSKHMKKFH 26
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 28.0 bits (62), Expect = 0.088
Identities = 6/32 (18%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 41 KYVRTTQENQYSCQHC--GKRYRWKSTLKRHE 70
KYV+ + + C K ++ + ++ H
Sbjct: 9 KYVKEMPDKTFECLFPGCTKTFKRRYNIRSHI 40
Score = 25.3 bits (55), Expect = 0.76
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 63 KSTLKRHEVFECGGKEPVHQCPHCDYRAKQSGNLRVHIRKYHT 105
+ ++ ++ V E K P C K+ N+R HI+ H
Sbjct: 4 RGSIDKY-VKEMPDKTFECLFPGCTKTFKRRYNIRSHIQT-HL 44
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 27.4 bits (61), Expect = 0.091
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 51 YSCQH--CGKRYRWKSTLKRHE 70
+SC CGK + +K LK H
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHM 23
Score = 23.1 bits (50), Expect = 3.5
Identities = 6/27 (22%), Positives = 11/27 (40%), Gaps = 3/27 (11%)
Query: 81 HQCPH--CDYRAKQSGNLRVHIRKYHT 105
CP C +L+ H++ H+
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKL-HS 27
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 26.9 bits (60), Expect = 0.12
Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 2/24 (8%)
Query: 48 ENQYSCQH--CGKRYRWKSTLKRH 69
+ YSC H C K + L RH
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRH 24
>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 27.0 bits (59), Expect = 0.13
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 81 HQCPHCDYRAKQSGNLRVHIR 101
++C CDY A S +L H+R
Sbjct: 4 YKCKTCDYAAADSSSLNKHLR 24
>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 44
Score = 27.4 bits (60), Expect = 0.14
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 51 YSCQHCGKRYRWKSTLKRH 69
Y C C KR+ W+ + RH
Sbjct: 6 YECNICAKRFMWRDSFHRH 24
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 26.5 bits (59), Expect = 0.17
Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 51 YSCQH--CGKRYRWKSTLKRHE 70
Y+C C +R+ + L RH
Sbjct: 3 YACPVESCDRRFSRSADLTRHI 24
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 26.6 bits (59), Expect = 0.19
Identities = 7/22 (31%), Positives = 10/22 (45%), Gaps = 2/22 (9%)
Query: 51 YSCQH--CGKRYRWKSTLKRHE 70
+ C CGKR+ L+ H
Sbjct: 3 FQCTFEGCGKRFSLDFNLRTHV 24
>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1
ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
Length = 285
Score = 28.2 bits (63), Expect = 0.36
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 106 SIELQSPSPAPRKPIVNPMQTQQQASNL 133
+ L++P PR + PMQT +A +
Sbjct: 34 RVGLKAPGIIPRISVREPMQTGIKAVDS 61
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 25.8 bits (57), Expect = 0.75
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 48 ENQYSCQHCGKRYRWKSTLKRHE 70
+ C C + + + LK H
Sbjct: 13 GGLHRCLACARYFIDSTNLKTHF 35
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 24.6 bits (53), Expect = 0.83
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 50 QYSCQHCGKRYRWKSTLKRHEVFECG 75
+ C CGK + S LKRH++ G
Sbjct: 2 VHVCAECGKAFVESSKLKRHQLVHTG 27
>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1
ATP synthase {Spinach (Spinacia oleracea), chloroplast
[TaxId: 3562]}
Length = 276
Score = 26.8 bits (59), Expect = 0.85
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 106 SIELQSPSPAPRKPIVNPMQTQQQASNLST 135
IE +P R+ + P+QT A +
Sbjct: 33 LIESPAPGIMSRRSVYEPLQTGLIAIDAMI 62
>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 28
Score = 24.6 bits (53), Expect = 1.0
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 51 YSCQHCGKRYRWKSTLKRHEVFEC 74
+ C CGK Y K L HE C
Sbjct: 2 FECPKCGKCYFRKENLLEHEARNC 25
>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor,
different fingers {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 36
Score = 24.3 bits (52), Expect = 1.6
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 50 QYSCQHCGKRYRWKSTLKRHEVFEC 74
++ C CG + STL+ H+ + C
Sbjct: 8 RFMCLPCGIAFSSPSTLEAHQAYYC 32
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 25.4 bits (55), Expect = 1.7
Identities = 7/48 (14%), Positives = 12/48 (25%)
Query: 46 TQENQYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCDYRAKQS 93
E + C + + E+ G E CP +
Sbjct: 16 PVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGH 63
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 67
Score = 24.6 bits (53), Expect = 1.8
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 50 QYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHC 86
++ C+ CG + + + + + G EPV C C
Sbjct: 21 KHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRVCDSC 57
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 23.8 bits (51), Expect = 1.8
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 78 EPVHQCPHCDYRAKQSGNLRVHIRKY 103
E +C C Y ++ S L VH+R +
Sbjct: 1 ERPFKCQICPYASRNSSQLTVHLRSH 26
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 23.8 bits (52), Expect = 1.9
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 81 HQCPH--CDYRAKQSGNLRVHIRKYHT 105
+ CP C+ + QS NL+ HI H
Sbjct: 3 YVCPFDGCNKKFAQSTNLKSHILT-HA 28
Score = 23.5 bits (51), Expect = 2.1
Identities = 7/21 (33%), Positives = 10/21 (47%), Gaps = 2/21 (9%)
Query: 51 YSCQH--CGKRYRWKSTLKRH 69
Y C C K++ + LK H
Sbjct: 3 YVCPFDGCNKKFAQSTNLKSH 23
>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 23.9 bits (51), Expect = 1.9
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 51 YSCQHCGKRYRWKSTLKRH 69
++C HCGK+ R + +K H
Sbjct: 3 FTCHHCGKQLRSLAGMKYH 21
Score = 23.2 bits (49), Expect = 3.0
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 83 CPHCDYRAKQSGNLRVHIRKYHTSI 107
C HC + + ++ H+ H S+
Sbjct: 5 CHHCGKQLRSLAGMKYHVMANHNSL 29
>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 29
Score = 23.9 bits (51), Expect = 2.0
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 51 YSCQH--CGKRYRWKSTLKRHE 70
Y C H C KR+ S LKRHE
Sbjct: 4 YECPHEGCDKRFSLPSRLKRHE 25
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 72
Score = 24.6 bits (53), Expect = 2.0
Identities = 9/37 (24%), Positives = 21/37 (56%)
Query: 50 QYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHC 86
++ C++CG+ + + T K+ + + G ++ V C C
Sbjct: 29 KHHCRNCGQVFCGQCTAKQCPLPKYGIEKEVRVCDGC 65
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 23.9 bits (51), Expect = 2.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 50 QYSCQHCGKRYRWKSTLKRHEVFECGGK 77
Q +C+ CGK +R L RH++ G K
Sbjct: 5 QVACEICGKIFRDVYHLNRHKLSHSGEK 32
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 23.2 bits (50), Expect = 3.0
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 48 ENQYSCQHCGKRYRWKSTLKRHE 70
E ++C CG+++ KRH
Sbjct: 1 EKPFACDICGRKFARSDERKRHT 23
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 64
Score = 23.9 bits (51), Expect = 3.1
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 50 QYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHC 86
++ C+ CG + + + K K+PV C C
Sbjct: 24 RHHCRQCGNIFCAECSAKNALTP--SSKKPVRVCDAC 58
>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz
{Human (Homo sapiens) [TaxId: 9606]}
Length = 33
Score = 23.1 bits (50), Expect = 3.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 51 YSCQHCGKRYRWKSTLKRH 69
Y C+ C K + ++ L++H
Sbjct: 8 YLCEFCLKYMKSRTILQQH 26
>d1cvra2 c.17.1.2 (A:1-350) Gingipain R (RgpB), N-terminal domain
{Porphyromonas gingivalis [TaxId: 837]}
Length = 350
Score = 25.5 bits (55), Expect = 3.3
Identities = 5/26 (19%), Positives = 9/26 (34%), Gaps = 1/26 (3%)
Query: 19 GVFTA-ALSTLARFHWLNWDPNPKYV 43
TA A+ + + + YV
Sbjct: 48 SPVTANAIQQFVKQEYEKEGNDLTYV 73
>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 23.9 bits (51), Expect = 3.7
Identities = 9/44 (20%), Positives = 22/44 (50%)
Query: 79 PVHQCPHCDYRAKQSGNLRVHIRKYHTSIELQSPSPAPRKPIVN 122
+QC HCD + + + L H+ ++ + ++ RK +++
Sbjct: 17 STYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQERRKQLLS 60
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 28
Score = 22.9 bits (49), Expect = 4.1
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 50 QYSCQHCGKRYRWKSTLKRH 69
+Y C+ CG R + S LK+H
Sbjct: 1 KYICEECGIRAKKPSMLKKH 20
Score = 22.1 bits (47), Expect = 6.9
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 83 CPHCDYRAKQSGNLRVHIRKYHT 105
C C RAK+ L+ HIR HT
Sbjct: 4 CEECGIRAKKPSMLKKHIRT-HT 25
>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)
{Bacteriophage T4 [TaxId: 10665]}
Length = 87
Score = 23.9 bits (51), Expect = 4.3
Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 72 FECGGKEP-VHQCPHCDYRAKQ 92
F+ G + +H+C CD AK+
Sbjct: 2 FKVYGYDSNIHKCGPCD-NAKR 22
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 24.3 bits (53), Expect = 5.7
Identities = 4/28 (14%), Positives = 10/28 (35%)
Query: 106 SIELQSPSPAPRKPIVNPMQTQQQASNL 133
+I ++P + T + +L
Sbjct: 34 AIHAEAPEFVEMSVEQEILVTGIKVVDL 61
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 59
Score = 23.2 bits (50), Expect = 5.8
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 8/39 (20%)
Query: 48 ENQYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHC 86
++ Y C C + + H+ +H CP C
Sbjct: 28 QHVYVCAVCQNVFCVDCDVFVHDS--------LHSCPGC 58
>d2dkta1 g.89.1.1 (A:8-81) RING finger and CHY zinc finger
domain-containing protein 1 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 74
Score = 23.5 bits (50), Expect = 6.3
Identities = 8/45 (17%), Positives = 14/45 (31%), Gaps = 10/45 (22%)
Query: 43 VRTTQENQYSCQHCGKRYRWKSTLKRHEVFECGGKEPVHQCPHCD 87
VR + C+H + K+ C ++ C C
Sbjct: 2 VRNLAQGPRGCEHYDRACLLKAP-------CCDK---LYTCRLCH 36
>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 22.4 bits (47), Expect = 7.6
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 51 YSCQHCGKRYRWKSTLKRH 69
+ C CGK + ++T+ RH
Sbjct: 5 FVCSKCGKTFTRRNTMARH 23
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 21.9 bits (46), Expect = 9.5
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 78 EPVHQCPHCDYRAKQSGNLRVHIRKYHTSIE 108
E + CP C R K+ + H+R + S+
Sbjct: 1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG 31
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.131 0.427
Gapped
Lambda K H
0.267 0.0628 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 561,003
Number of extensions: 24875
Number of successful extensions: 195
Number of sequences better than 10.0: 1
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 93
Length of query: 145
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 68
Effective length of database: 1,350,386
Effective search space: 91826248
Effective search space used: 91826248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (22.9 bits)