BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16401
(94 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OHU|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHV|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
Length = 125
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 11/72 (15%)
Query: 32 LVDCALSAEGKTIQAHKVLLSACSPYFAVSL----------PIPKRGMPETFSPDLRFYE 81
L D L E K +AH+ +L+ACS YF +L +P+ F P L+F
Sbjct: 32 LCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKNDLVVSLPEEVTARGFGPLLQFAY 91
Query: 82 TDGILPFAREDL 93
T +L +RE++
Sbjct: 92 TAKLL-LSRENI 102
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 35.0 bits (79), Expect = 0.011, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 26 LLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFA 59
L +S DC L G+ QAHK +L+A SP F+
Sbjct: 168 LWENSRFTDCCLCVAGQEFQAHKAILAARSPVFS 201
>pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of
Human Bach1
pdb|2IHC|B Chain B, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of
Human Bach1
pdb|2IHC|C Chain C, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of
Human Bach1
pdb|2IHC|D Chain D, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of
Human Bach1
Length = 124
Score = 33.5 bits (75), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 8 FCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYF--------- 58
F + H ++ ++ L D + EG+ +AH+ +L+ACS YF
Sbjct: 5 FAYESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQAD 64
Query: 59 -AVSLPIPKRGMPETFSPDLRFYETDGIL 86
+++ +P+ + F P ++F T ++
Sbjct: 65 GELNITLPEEVTVKGFEPLIQFAYTAKLI 93
>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain
Length = 138
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 8 FCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYF--------- 58
F + H ++ ++ L D + EG+ +AH+ +L+ACS YF
Sbjct: 12 FAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTD 71
Query: 59 -AVSLPIPKRGMPETFSPDLRFYETDGIL 86
+++ +P+ + F P ++F T ++
Sbjct: 72 AELTVTLPEEVTVKGFEPLIQFAYTAKLI 100
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|C Chain C, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|D Chain D, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
Length = 172
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 26 LLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAV 60
L +S DC L G+ QAHK +L+A SP F+
Sbjct: 28 LWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSA 62
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 33.1 bits (74), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 26 LLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAV 60
L +S DC L G+ QAHK +L+A SP F+
Sbjct: 19 LWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSA 53
>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
pdb|3M52|B Chain B, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
Length = 117
Score = 32.7 bits (73), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 32 LVDCALSAEGKTIQAHKVLLSACSPYF 58
L DC +G +AHK +L+ACS YF
Sbjct: 25 LCDCTFVVDGVHFKAHKAVLAACSEYF 51
>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|B Chain B, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|C Chain C, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|D Chain D, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
Length = 119
Score = 32.7 bits (73), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 32 LVDCALSAEGKTIQAHKVLLSACSPYF 58
L DC +G +AHK +L+ACS YF
Sbjct: 27 LCDCTFVVDGVHFKAHKAVLAACSEYF 53
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 14 NHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYF 58
+H + ++S + L D + EG+ H+ +L+ACS YF
Sbjct: 17 DHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYF 61
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|B Chain B, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|C Chain C, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|D Chain D, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|E Chain E, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|F Chain F, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
Length = 130
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 4 GDQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYF 58
G C+++ H + ++ + L + L D + + +AHK +L ACS F
Sbjct: 4 GSADSCIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLF 58
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 14 NHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYF 58
+H + ++S + L D + EG+ H+ +L+ACS YF
Sbjct: 7 DHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYF 51
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 14 NHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYF--------AVSLPIP 65
N N+++ + D ++ +G +AH+ +L+A S YF + + +P
Sbjct: 15 NFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNSRSAVVELP 74
Query: 66 KRGMPETFSPDLRFYETDGI-LPFAREDLL 94
P++F L F T + + +DLL
Sbjct: 75 AAVQPQSFQQILSFCYTGRLSMNVGDQDLL 104
>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin
Length = 359
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 56 PYFAVSLPIPKRGMPETFSPD-LRFYETDGIL 86
P++ +SLPI KRG PE D +R + + +L
Sbjct: 180 PFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVL 211
>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With
Ubiquitin
Length = 348
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 56 PYFAVSLPIPKRGMPETFSPD-LRFYETDGIL 86
P++ +SLPI KRG PE D +R + + +L
Sbjct: 180 PFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVL 211
>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated
Ubiquitin
pdb|3V6E|A Chain A, Crystal Structure Of Usp2 And A Mutant Form Of Ubiquitin
Length = 367
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 56 PYFAVSLPIPKRGMPETFSPD-LRFYETDGIL 86
P++ +SLPI KRG PE D +R + + +L
Sbjct: 199 PFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVL 230
>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex
Length = 374
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 56 PYFAVSLPIPKRGMPETFSPD-LRFYETDGIL 86
P++ +SLPI KRG PE D +R + + +L
Sbjct: 206 PFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVL 237
>pdb|3FKC|A Chain A, Crystal Structure Of Human Zinc Finger And Btb Domain
Containing 33
Length = 116
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 34 DCALSAEGKTIQAHKVLLSACSPYFAVSLPIPKRGM------PETFSPDLRFYETDGILP 87
D + E + +AHK +LSA S YF + + + E F+ L + + I+
Sbjct: 33 DVTVIVEDRKFRAHKNILSASSTYFHQLFSVAGQVVELSFIRAEIFAEILNYIYSSKIVR 92
Query: 88 FAREDLL 94
R DLL
Sbjct: 93 -VRSDLL 98
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R28|B Chain B, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R29|A Chain A, Crystal Structure Of The B-cell Lymphoma 6 (bcl6) Btb
Domain To 1.3 Angstrom
pdb|1R2B|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
A Smrt Co-Repressor Peptide
pdb|1R2B|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
A Smrt Co-Repressor Peptide
pdb|3BIM|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Dimer In
Complex With The Bcor Bbd Corepressor Peptide
pdb|3BIM|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Dimer In
Complex With The Bcor Bbd Corepressor Peptide
pdb|3BIM|C Chain C, Crystal Structure Of The Bcl6 Btb Domain Dimer In
Complex With The Bcor Bbd Corepressor Peptide
pdb|3BIM|D Chain D, Crystal Structure Of The Bcl6 Btb Domain Dimer In
Complex With The Bcor Bbd Corepressor Peptide
pdb|3BIM|E Chain E, Crystal Structure Of The Bcl6 Btb Domain Dimer In
Complex With The Bcor Bbd Corepressor Peptide
pdb|3BIM|F Chain F, Crystal Structure Of The Bcl6 Btb Domain Dimer In
Complex With The Bcor Bbd Corepressor Peptide
pdb|3BIM|G Chain G, Crystal Structure Of The Bcl6 Btb Domain Dimer In
Complex With The Bcor Bbd Corepressor Peptide
pdb|3BIM|H Chain H, Crystal Structure Of The Bcl6 Btb Domain Dimer In
Complex With The Bcor Bbd Corepressor Peptide
pdb|3LBZ|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
pdb|3LBZ|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
Length = 127
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 10 LRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYF 58
+++ H + ++ + L + L D + + +AHK +L ACS F
Sbjct: 7 IQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLF 55
>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
II
pdb|3M4T|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
I
Length = 124
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 34 DCALSAEGKTIQAHKVLLSACSPYFAVSLPIPKRGM------PETFSPDLRFYETDGILP 87
D + E + +AHK +LSA S YF + + + E F+ L + + I+
Sbjct: 35 DVTVIVEDRKFRAHKNILSASSTYFHQLFSVAGQVVELSFIRAEIFAEILNYIYSSKIVR 94
Query: 88 FAREDLL 94
R DLL
Sbjct: 95 -VRSDLL 100
>pdb|3QKC|B Chain B, Crystal Structure Of Geranyl Diphosphate Synthase Small
Subunit From Antirrhinum Majus
pdb|3QKC|A Chain A, Crystal Structure Of Geranyl Diphosphate Synthase Small
Subunit From Antirrhinum Majus
Length = 273
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 63 PIPKRGMPETFSPDLRFYETDGILPFARE 91
P+ K + F P++ DGI+PF E
Sbjct: 93 PMSKSEIQHKFDPNIELLTGDGIIPFGLE 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,824,401
Number of Sequences: 62578
Number of extensions: 86536
Number of successful extensions: 201
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 181
Number of HSP's gapped (non-prelim): 20
length of query: 94
length of database: 14,973,337
effective HSP length: 61
effective length of query: 33
effective length of database: 11,156,079
effective search space: 368150607
effective search space used: 368150607
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)