Query psy16401
Match_columns 94
No_of_seqs 149 out of 1213
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 20:24:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16401.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16401hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02713 hypothetical protein; 99.9 6.7E-22 1.4E-26 142.6 8.0 84 11-94 4-91 (557)
2 KOG4441|consensus 99.9 1.5E-21 3.2E-26 141.2 7.3 89 6-94 10-100 (571)
3 PF00651 BTB: BTB/POZ domain; 99.7 1.1E-18 2.5E-23 101.8 4.2 72 23-94 1-76 (111)
4 PHA02790 Kelch-like protein; P 99.7 4.6E-18 1E-22 121.0 5.2 73 20-94 10-86 (480)
5 KOG4350|consensus 99.7 3.4E-18 7.4E-23 118.4 3.5 81 14-94 26-108 (620)
6 PHA03098 kelch-like protein; P 99.7 3.1E-17 6.8E-22 117.5 6.1 64 29-94 6-71 (534)
7 smart00225 BTB Broad-Complex, 99.6 1.3E-15 2.7E-20 84.8 6.6 61 34-94 1-63 (90)
8 KOG4591|consensus 99.4 1E-12 2.2E-17 84.2 5.1 81 13-94 47-130 (280)
9 KOG2075|consensus 99.3 2.1E-12 4.5E-17 90.9 6.0 86 9-94 91-183 (521)
10 KOG0783|consensus 99.1 5.5E-11 1.2E-15 88.5 3.9 66 28-93 554-633 (1267)
11 KOG2838|consensus 98.9 2E-09 4.4E-14 72.1 3.6 81 13-93 111-195 (401)
12 KOG4682|consensus 98.5 1.6E-07 3.4E-12 65.7 3.5 70 24-94 61-136 (488)
13 KOG0783|consensus 98.4 5.1E-08 1.1E-12 73.2 -0.1 60 32-91 710-772 (1267)
14 PF03931 Skp1_POZ: Skp1 family 97.6 0.00021 4.6E-09 37.8 4.7 55 35-90 3-58 (62)
15 KOG2838|consensus 97.5 0.00014 3.1E-09 49.2 3.5 77 18-94 221-326 (401)
16 KOG0511|consensus 96.8 0.00028 6E-09 49.7 -0.0 60 33-92 150-210 (516)
17 PF02214 BTB_2: BTB/POZ domain 96.7 0.0019 4E-08 36.6 2.5 56 35-91 1-62 (94)
18 KOG0511|consensus 96.6 0.0012 2.6E-08 46.6 1.9 51 42-93 301-357 (516)
19 smart00512 Skp1 Found in Skp1 96.5 0.0057 1.2E-07 35.3 4.1 56 35-91 4-63 (104)
20 KOG2716|consensus 95.8 0.024 5.2E-07 37.5 4.6 58 35-93 7-68 (230)
21 KOG3473|consensus 93.7 0.13 2.9E-06 29.8 3.5 54 35-89 19-77 (112)
22 KOG1987|consensus 93.6 0.025 5.4E-07 38.1 0.5 53 40-92 108-162 (297)
23 KOG2714|consensus 92.5 0.32 6.9E-06 35.1 4.7 59 35-94 13-77 (465)
24 KOG1724|consensus 83.4 1.6 3.5E-05 27.5 2.9 52 39-91 12-65 (162)
25 PF09593 Pathogen_betaC1: Beta 80.1 1 2.2E-05 26.9 1.1 59 34-93 15-76 (117)
26 PF11822 DUF3342: Domain of un 79.2 2.6 5.6E-05 29.4 3.0 50 42-91 14-67 (317)
27 COG5201 SKP1 SCF ubiquitin lig 71.5 5.7 0.00012 24.3 2.8 51 38-89 8-58 (158)
28 KOG1665|consensus 64.4 11 0.00023 25.5 3.2 59 35-94 11-76 (302)
29 KOG3342|consensus 59.7 6.8 0.00015 24.7 1.6 19 33-51 81-101 (180)
30 KOG4390|consensus 56.7 16 0.00035 26.7 3.2 57 35-94 42-103 (632)
31 KOG3863|consensus 56.3 1.1 2.5E-05 33.6 -2.6 38 22-64 4-41 (604)
32 KOG1778|consensus 52.7 2.4 5.2E-05 29.6 -1.4 57 36-92 30-88 (319)
33 KOG2715|consensus 51.5 16 0.00036 23.4 2.3 60 35-94 23-88 (210)
34 KOG3840|consensus 49.7 25 0.00055 24.8 3.2 61 34-94 97-164 (438)
35 KOG3713|consensus 44.8 75 0.0016 23.7 5.0 59 34-94 32-104 (477)
36 PF04343 DUF488: Protein of un 43.7 34 0.00073 20.0 2.8 19 35-53 101-120 (122)
37 PF06404 PSK: Phytosulfokine p 39.7 18 0.0004 20.1 1.1 15 78-92 63-77 (81)
38 COG1576 Uncharacterized conser 39.1 55 0.0012 20.6 3.3 26 15-42 81-106 (155)
39 PF02519 Auxin_inducible: Auxi 37.6 82 0.0018 18.1 4.7 52 35-89 41-99 (100)
40 cd00758 MoCF_BD MoCF_BD: molyb 37.5 69 0.0015 18.9 3.5 75 12-89 41-129 (133)
41 PRK09738 small toxic polypepti 35.3 57 0.0012 16.6 2.4 22 26-47 24-45 (52)
42 PF01848 HOK_GEF: Hok/gef fami 34.8 61 0.0013 15.8 2.5 22 26-47 19-40 (43)
43 PF04699 P16-Arc: ARP2/3 compl 31.4 17 0.00036 22.7 0.1 19 74-92 95-113 (152)
44 PRK09759 small toxic polypepti 30.2 80 0.0017 15.9 2.5 22 26-47 22-43 (50)
45 PF10905 DUF2695: Protein of u 23.8 1.1E+02 0.0024 15.6 2.3 19 21-39 34-52 (53)
46 PF00994 MoCF_biosynth: Probab 23.6 1.7E+02 0.0037 17.3 3.6 29 11-42 38-66 (144)
47 PRK04021 hypothetical protein; 22.7 98 0.0021 17.6 2.2 43 45-87 46-91 (92)
48 KOG2485|consensus 22.2 2.4E+02 0.0051 20.1 4.3 46 13-63 27-72 (335)
49 KOG3368|consensus 22.1 38 0.00082 20.8 0.4 25 67-91 78-102 (140)
50 COG0350 Ada Methylated DNA-pro 21.7 21 0.00045 22.5 -0.8 12 43-54 136-147 (168)
51 PF14615 Rsa3: Ribosome-assemb 21.1 1.2E+02 0.0027 14.9 2.1 19 16-34 11-29 (47)
52 COG1531 Uncharacterized protei 20.6 42 0.00091 18.6 0.4 15 36-50 48-62 (77)
53 PF06497 DUF1098: Protein of u 20.6 36 0.00077 19.6 0.1 77 14-93 18-94 (95)
54 KOG3380|consensus 20.5 22 0.00047 22.2 -0.8 18 75-92 96-113 (152)
55 PF08671 SinI: Anti-repressor 20.3 70 0.0015 14.3 1.0 13 76-88 16-28 (30)
No 1
>PHA02713 hypothetical protein; Provisional
Probab=99.86 E-value=6.7e-22 Score=142.64 Aligned_cols=84 Identities=23% Similarity=0.292 Sum_probs=76.4
Q ss_pred eeCCcHHHHHHHHHHHHhCCCcccEEEEeC-CeEEEhhHHHhhccCHHHHhhCCC--CCC-CCCeEEcCCCCHHHHHHhh
Q psy16401 11 RWNNHQNTLISVFHNLLNSSTLVDCALSAE-GKTIQAHKVLLSACSPYFAVSLPI--PKR-GMPETFSPDLRFYETDGIL 86 (94)
Q Consensus 11 ~~~~~~~~~~~~l~~~~~~~~~~Dv~~~~~-~~~~~~Hk~vL~a~S~~f~~~f~~--~~~-~~~~i~l~~~~~~~~~~lL 86 (94)
..+.|+..+++.|+++|.++.+|||+|.++ |+.|+|||.||||+|+||++||++ .+. .+.+|.|+++++++++.+|
T Consensus 4 ~~~~h~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll 83 (557)
T PHA02713 4 DDIKHNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIV 83 (557)
T ss_pred chhhhhHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHH
Confidence 346889999999999999999999999997 899999999999999999999965 433 4788999999999999999
Q ss_pred cccccCCC
Q psy16401 87 PFAREDLL 94 (94)
Q Consensus 87 ~f~Ytg~l 94 (94)
+|+|||+|
T Consensus 84 ~y~Yt~~i 91 (557)
T PHA02713 84 QYLYNRHI 91 (557)
T ss_pred HHhcCCCC
Confidence 99999974
No 2
>KOG4441|consensus
Probab=99.85 E-value=1.5e-21 Score=141.15 Aligned_cols=89 Identities=22% Similarity=0.295 Sum_probs=82.9
Q ss_pred cceEEeeCCcHHHHHHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCC--CCCCCCeEEcCCCCHHHHH
Q psy16401 6 QHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPI--PKRGMPETFSPDLRFYETD 83 (94)
Q Consensus 6 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~--~~~~~~~i~l~~~~~~~~~ 83 (94)
....+..+.|...+++.|+.+|.++.+|||++.+++++|+|||.||||+|+||++||++ .+..+.+|.+.++++..++
T Consensus 10 ~~~~~~~~~h~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~ 89 (571)
T KOG4441|consen 10 STSEFTDPSHSKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLE 89 (571)
T ss_pred cccccccHHHHHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHH
Confidence 33456678999999999999999999999999999999999999999999999999974 8899999999999999999
Q ss_pred HhhcccccCCC
Q psy16401 84 GILPFAREDLL 94 (94)
Q Consensus 84 ~lL~f~Ytg~l 94 (94)
.+|+|+|||++
T Consensus 90 ~ll~y~Yt~~i 100 (571)
T KOG4441|consen 90 LLLDYAYTGKL 100 (571)
T ss_pred HHHHHhhcceE
Confidence 99999999975
No 3
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.75 E-value=1.1e-18 Score=101.76 Aligned_cols=72 Identities=28% Similarity=0.426 Sum_probs=60.8
Q ss_pred HHHHHhCCCcccEEEEeC-CeEEEhhHHHhhccCHHHHhhCCCC-CCC--CCeEEcCCCCHHHHHHhhcccccCCC
Q psy16401 23 FHNLLNSSTLVDCALSAE-GKTIQAHKVLLSACSPYFAVSLPIP-KRG--MPETFSPDLRFYETDGILPFAREDLL 94 (94)
Q Consensus 23 l~~~~~~~~~~Dv~~~~~-~~~~~~Hk~vL~a~S~~f~~~f~~~-~~~--~~~i~l~~~~~~~~~~lL~f~Ytg~l 94 (94)
|+++++++.++|++|.++ ++.|+|||.||+++|+||+.+|... ... ..++.+++++++.++.+|+|+|+|++
T Consensus 1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~ 76 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEI 76 (111)
T ss_dssp HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEE
T ss_pred ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcc
Confidence 578899999999999999 7999999999999999999999765 222 34688999999999999999999863
No 4
>PHA02790 Kelch-like protein; Provisional
Probab=99.73 E-value=4.6e-18 Score=120.98 Aligned_cols=73 Identities=16% Similarity=0.153 Sum_probs=60.7
Q ss_pred HHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCC--CCCCCCeEEc--CCCCHHHHHHhhcccccCCC
Q psy16401 20 ISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPI--PKRGMPETFS--PDLRFYETDGILPFAREDLL 94 (94)
Q Consensus 20 ~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~--~~~~~~~i~l--~~~~~~~~~~lL~f~Ytg~l 94 (94)
.+.+-.++..+.+|||++.+| ++|+|||.|||++|+||++||++ .|+.+ +|.+ .+++++.++.+|+|+|||+|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~-~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l 86 (480)
T PHA02790 10 CKNILALSMTKKFKTIIEAIG-GNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKV 86 (480)
T ss_pred hhhHHHHHhhhhhceEEEEcC-cEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeE
Confidence 455667888999999887766 58999999999999999999964 45543 4544 49999999999999999975
No 5
>KOG4350|consensus
Probab=99.72 E-value=3.4e-18 Score=118.40 Aligned_cols=81 Identities=20% Similarity=0.260 Sum_probs=73.6
Q ss_pred CcHHHHHHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhC--CCCCCCCCeEEcCCCCHHHHHHhhccccc
Q psy16401 14 NHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSL--PIPKRGMPETFSPDLRFYETDGILPFARE 91 (94)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f--~~~~~~~~~i~l~~~~~~~~~~lL~f~Yt 91 (94)
+-++.+.+.+.+++....++||+++++++.|||||+|||++|.|||+++ ++.++.+..|.+++...++|+.+|+|+||
T Consensus 26 ~i~~~fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYt 105 (620)
T KOG4350|consen 26 AISNNFSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYT 105 (620)
T ss_pred hhccchhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhh
Confidence 3445567888999999999999999999999999999999999999999 44788899999999999999999999999
Q ss_pred CCC
Q psy16401 92 DLL 94 (94)
Q Consensus 92 g~l 94 (94)
|++
T Consensus 106 g~~ 108 (620)
T KOG4350|consen 106 GKI 108 (620)
T ss_pred cce
Confidence 975
No 6
>PHA03098 kelch-like protein; Provisional
Probab=99.69 E-value=3.1e-17 Score=117.50 Aligned_cols=64 Identities=17% Similarity=0.239 Sum_probs=59.0
Q ss_pred CCCcccEEEEe--CCeEEEhhHHHhhccCHHHHhhCCCCCCCCCeEEcCCCCHHHHHHhhcccccCCC
Q psy16401 29 SSTLVDCALSA--EGKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSPDLRFYETDGILPFAREDLL 94 (94)
Q Consensus 29 ~~~~~Dv~~~~--~~~~~~~Hk~vL~a~S~~f~~~f~~~~~~~~~i~l~~~~~~~~~~lL~f~Ytg~l 94 (94)
++.+||++|.+ +|+.|+|||.||+++|+||++||.+... ..+|.+++ +++.|+.+|+|+|||++
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~-~~~i~l~~-~~~~~~~~l~y~Ytg~~ 71 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK-ENEINLNI-DYDSFNEVIKYIYTGKI 71 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC-CceEEecC-CHHHHHHHHHHhcCCce
Confidence 78899999998 9999999999999999999999976444 78899999 99999999999999975
No 7
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.63 E-value=1.3e-15 Score=84.77 Aligned_cols=61 Identities=31% Similarity=0.477 Sum_probs=55.2
Q ss_pred cEEEEeCCeEEEhhHHHhhccCHHHHhhCCCCCC--CCCeEEcCCCCHHHHHHhhcccccCCC
Q psy16401 34 DCALSAEGKTIQAHKVLLSACSPYFAVSLPIPKR--GMPETFSPDLRFYETDGILPFAREDLL 94 (94)
Q Consensus 34 Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~~~~--~~~~i~l~~~~~~~~~~lL~f~Ytg~l 94 (94)
|+++.++|+.|++||.+|+++|+||+.++..... ....+.+++.++..|+.+|+|+|+|++
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~ 63 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKL 63 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCcee
Confidence 7889999999999999999999999999976333 678899999999999999999999864
No 8
>KOG4591|consensus
Probab=99.37 E-value=1e-12 Score=84.22 Aligned_cols=81 Identities=20% Similarity=0.243 Sum_probs=69.2
Q ss_pred CCcHHHHHHHHHHHHhCCCcccEEEEeC---CeEEEhhHHHhhccCHHHHhhCCCCCCCCCeEEcCCCCHHHHHHhhccc
Q psy16401 13 NNHQNTLISVFHNLLNSSTLVDCALSAE---GKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSPDLRFYETDGILPFA 89 (94)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~~~~Dv~~~~~---~~~~~~Hk~vL~a~S~~f~~~f~~~~~~~~~i~l~~~~~~~~~~lL~f~ 89 (94)
..+.+.++.-..+++.++.|+|+++.++ ++.++|||.||||+|++.+-- ++...+..+..+++.+++++...|+|+
T Consensus 47 dSF~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wkfa-N~~dekse~~~~dDad~Ea~~t~iRWI 125 (280)
T KOG4591|consen 47 DSFISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWKFA-NGGDEKSEELDLDDADFEAFHTAIRWI 125 (280)
T ss_pred hhHHHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhhhc-cCCCcchhhhcccccCHHHHHHhheee
Confidence 4678888888899999999999999998 478999999999999987622 334455667888999999999999999
Q ss_pred ccCCC
Q psy16401 90 REDLL 94 (94)
Q Consensus 90 Ytg~l 94 (94)
||++|
T Consensus 126 YTDEi 130 (280)
T KOG4591|consen 126 YTDEI 130 (280)
T ss_pred ecccc
Confidence 99975
No 9
>KOG2075|consensus
Probab=99.35 E-value=2.1e-12 Score=90.94 Aligned_cols=86 Identities=22% Similarity=0.244 Sum_probs=75.4
Q ss_pred EEeeCCcHHHHHHHHHHHHhCCCcccEEEEeCC-----eEEEhhHHHhhccCHHHHhhCCC--CCCCCCeEEcCCCCHHH
Q psy16401 9 CLRWNNHQNTLISVFHNLLNSSTLVDCALSAEG-----KTIQAHKVLLSACSPYFAVSLPI--PKRGMPETFSPDLRFYE 81 (94)
Q Consensus 9 ~~~~~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~-----~~~~~Hk~vL~a~S~~f~~~f~~--~~~~~~~i~l~~~~~~~ 81 (94)
.++|......+..+.-.++++...+|+.+++++ +.+||||.||+..|.+|.+||.+ .+....+|.++++.+..
T Consensus 91 ~~nwq~~~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaa 170 (521)
T KOG2075|consen 91 IPNWQAQKETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAA 170 (521)
T ss_pred CcccccchhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhH
Confidence 456777778888888899999999999999973 67999999999999999999965 44457899999999999
Q ss_pred HHHhhcccccCCC
Q psy16401 82 TDGILPFAREDLL 94 (94)
Q Consensus 82 ~~~lL~f~Ytg~l 94 (94)
|..+|+|+|+.++
T Consensus 171 Fl~~L~flYsdev 183 (521)
T KOG2075|consen 171 FLAFLRFLYSDEV 183 (521)
T ss_pred hHHHHHHHhcchh
Confidence 9999999999753
No 10
>KOG0783|consensus
Probab=99.12 E-value=5.5e-11 Score=88.55 Aligned_cols=66 Identities=17% Similarity=0.170 Sum_probs=55.4
Q ss_pred hCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCC--CC------------CCCCeEEcCCCCHHHHHHhhcccccCC
Q psy16401 28 NSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPI--PK------------RGMPETFSPDLRFYETDGILPFAREDL 93 (94)
Q Consensus 28 ~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~--~~------------~~~~~i~l~~~~~~~~~~lL~f~Ytg~ 93 (94)
....+.||+|.||+..|+|||.||+++|++|+.+|.. +. .....|.++++++..|+.+|.|+||+.
T Consensus 554 ~~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt 633 (1267)
T KOG0783|consen 554 YKDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDT 633 (1267)
T ss_pred cccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhccc
Confidence 3567899999999999999999999999999999832 11 223456688999999999999999985
No 11
>KOG2838|consensus
Probab=98.87 E-value=2e-09 Score=72.06 Aligned_cols=81 Identities=14% Similarity=0.155 Sum_probs=67.7
Q ss_pred CCcHHHHHHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCCCCCCCCe----EEcCCCCHHHHHHhhcc
Q psy16401 13 NNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPIPKRGMPE----TFSPDLRFYETDGILPF 88 (94)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~~~~~~~~----i~l~~~~~~~~~~lL~f 88 (94)
.....++++++.+.+......|+-+....+.|||||++|+++||+|+.+.+..+....+ +..-+++.+.|+.+|.+
T Consensus 111 R~ea~sf~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~ 190 (401)
T KOG2838|consen 111 RKEANSFLKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHS 190 (401)
T ss_pred CcchhHHHHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHH
Confidence 34567778888888877788899999999999999999999999999988775555443 44559999999999999
Q ss_pred cccCC
Q psy16401 89 AREDL 93 (94)
Q Consensus 89 ~Ytg~ 93 (94)
+|||+
T Consensus 191 l~tgE 195 (401)
T KOG2838|consen 191 LITGE 195 (401)
T ss_pred HHhcc
Confidence 99996
No 12
>KOG4682|consensus
Probab=98.46 E-value=1.6e-07 Score=65.72 Aligned_cols=70 Identities=21% Similarity=0.161 Sum_probs=60.3
Q ss_pred HHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCC--CCCCCCeEEc----CCCCHHHHHHhhcccccCCC
Q psy16401 24 HNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPI--PKRGMPETFS----PDLRFYETDGILPFAREDLL 94 (94)
Q Consensus 24 ~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~--~~~~~~~i~l----~~~~~~~~~~lL~f~Ytg~l 94 (94)
+.++.++.-+||++.+-|.+++.||.-|. .|+||.+||.+ .++....|.+ |+++.+++..++.-+|.++|
T Consensus 61 q~lf~q~enSDv~l~alg~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEv 136 (488)
T KOG4682|consen 61 QNLFLQGENSDVILEALGFEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEV 136 (488)
T ss_pred HHHHhcCCCcceehhhccceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhhe
Confidence 46788999999999999999999999998 58999999976 5666666555 38999999999999998865
No 13
>KOG0783|consensus
Probab=98.40 E-value=5.1e-08 Score=73.21 Aligned_cols=60 Identities=22% Similarity=0.290 Sum_probs=46.4
Q ss_pred cccEEEEe-CCeEEEhhHHHhhccCHHHHhhCCC--CCCCCCeEEcCCCCHHHHHHhhccccc
Q psy16401 32 LVDCALSA-EGKTIQAHKVLLSACSPYFAVSLPI--PKRGMPETFSPDLRFYETDGILPFARE 91 (94)
Q Consensus 32 ~~Dv~~~~-~~~~~~~Hk~vL~a~S~~f~~~f~~--~~~~~~~i~l~~~~~~~~~~lL~f~Yt 91 (94)
.-|+.|.+ +|+.++||+++|+|+.+||..||.. .|+....+....+..+.++.+|+|+|+
T Consensus 710 ~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs 772 (1267)
T KOG0783|consen 710 TMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYS 772 (1267)
T ss_pred ceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHc
Confidence 34666666 6777999999999999999999965 333334444445669999999999995
No 14
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=97.60 E-value=0.00021 Score=37.76 Aligned_cols=55 Identities=9% Similarity=0.042 Sum_probs=42.2
Q ss_pred EEEEe-CCeEEEhhHHHhhccCHHHHhhCCCCCCCCCeEEcCCCCHHHHHHhhcccc
Q psy16401 35 CALSA-EGKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSPDLRFYETDGILPFAR 90 (94)
Q Consensus 35 v~~~~-~~~~~~~Hk~vL~a~S~~f~~~f~~~~~~~~~i~l~~~~~~~~~~lL~f~Y 90 (94)
++++. +|+.|.+.+.+.. .|..++.++.........|.+++++...++.+++|++
T Consensus 3 v~L~SsDg~~f~V~~~~a~-~S~~i~~ml~~~~~~~~~Ipl~~v~~~~L~kViewc~ 58 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAAK-QSKTIKNMLEDLGDEDEPIPLPNVSSRILKKVIEWCE 58 (62)
T ss_dssp EEEEETTSEEEEEEHHHHT-TSHHHHHHHHCTCCCGTEEEETTS-HHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHHH-HhHHHHHHHhhhcccccccccCccCHHHHHHHHHHHH
Confidence 34444 7788999888877 7899999995433332389999999999999999985
No 15
>KOG2838|consensus
Probab=97.47 E-value=0.00014 Score=49.24 Aligned_cols=77 Identities=21% Similarity=0.144 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhCCCcccEEE-E-eCC--------------eEEEhhHHHhhccCHHHHhhCC-----CCC------CCCC
Q psy16401 18 TLISVFHNLLNSSTLVDCAL-S-AEG--------------KTIQAHKVLLSACSPYFAVSLP-----IPK------RGMP 70 (94)
Q Consensus 18 ~~~~~l~~~~~~~~~~Dv~~-~-~~~--------------~~~~~Hk~vL~a~S~~f~~~f~-----~~~------~~~~ 70 (94)
.+-.+++.++......|+.+ . ++| .+++||+.|.+++|++||.++. +++ ....
T Consensus 221 kLd~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~Pk 300 (401)
T KOG2838|consen 221 KLDEDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPK 300 (401)
T ss_pred hhhHHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCc
Confidence 33445556666655555444 2 232 3688999999999999999882 111 2334
Q ss_pred eEEcC-CCCHHHH-HHhhcccccCCC
Q psy16401 71 ETFSP-DLRFYET-DGILPFAREDLL 94 (94)
Q Consensus 71 ~i~l~-~~~~~~~-~~lL~f~Ytg~l 94 (94)
.|.+. -+=|..+ -.+|.++||+.+
T Consensus 301 RIifdE~I~PkafA~i~lhclYTD~l 326 (401)
T KOG2838|consen 301 RIIFDELIFPKAFAPIFLHCLYTDRL 326 (401)
T ss_pred eeechhhhcchhhhhhhhhhheeccc
Confidence 55554 2333333 357889999864
No 16
>KOG0511|consensus
Probab=96.84 E-value=0.00028 Score=49.67 Aligned_cols=60 Identities=20% Similarity=0.069 Sum_probs=45.3
Q ss_pred ccEEEEe-CCeEEEhhHHHhhccCHHHHhhCCCCCCCCCeEEcCCCCHHHHHHhhcccccC
Q psy16401 33 VDCALSA-EGKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSPDLRFYETDGILPFARED 92 (94)
Q Consensus 33 ~Dv~~~~-~~~~~~~Hk~vL~a~S~~f~~~f~~~~~~~~~i~l~~~~~~~~~~lL~f~Ytg 92 (94)
.|+.+.. +|+.|.||+..|+++|++|..-+.+......+|.-..+-+..|..+|+|+|-.
T Consensus 150 ~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~~~heI~~~~v~~~~f~~flk~lyl~ 210 (516)
T KOG0511|consen 150 HDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYVQGHEIEAHRVILSAFSPFLKQLYLN 210 (516)
T ss_pred cchHHHhhccccccHHHHHHHhhhcccCchhhhhccccCchhhhhhhHhhhhHHHHHHHHh
Confidence 4777755 67889999999999999987655443344455655567888999999999853
No 17
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=96.65 E-value=0.0019 Score=36.55 Aligned_cols=56 Identities=18% Similarity=0.119 Sum_probs=43.6
Q ss_pred EEEEeCCeEEEhhHHHhh-ccCHHHHhhCCCC-----CCCCCeEEcCCCCHHHHHHhhccccc
Q psy16401 35 CALSAEGKTIQAHKVLLS-ACSPYFAVSLPIP-----KRGMPETFSPDLRFYETDGILPFARE 91 (94)
Q Consensus 35 v~~~~~~~~~~~Hk~vL~-a~S~~f~~~f~~~-----~~~~~~i~l~~~~~~~~~~lL~f~Yt 91 (94)
|.+.|||+.|.+-+..|. ...++|..++... ......+-+ +-+|..|+.||+|+-+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~ 62 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRT 62 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhh
Confidence 678999999999999998 5567888887532 344556665 5799999999999988
No 18
>KOG0511|consensus
Probab=96.62 E-value=0.0012 Score=46.56 Aligned_cols=51 Identities=18% Similarity=0.012 Sum_probs=40.2
Q ss_pred eEEEhhHHHhhccCHHHHhhCCC--CC----CCCCeEEcCCCCHHHHHHhhcccccCC
Q psy16401 42 KTIQAHKVLLSACSPYFAVSLPI--PK----RGMPETFSPDLRFYETDGILPFAREDL 93 (94)
Q Consensus 42 ~~~~~Hk~vL~a~S~~f~~~f~~--~~----~~~~~i~l~~~~~~~~~~lL~f~Ytg~ 93 (94)
..+|||..+++. ++||+.||.+ .+ ..-+...+|+....+.+.+++|+|+.+
T Consensus 301 ~RyP~hla~i~R-~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~ 357 (516)
T KOG0511|consen 301 DRYPAHLARILR-VEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQ 357 (516)
T ss_pred ccccHHHHHHHH-HHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhccc
Confidence 459999999985 6899999965 22 223455777889999999999999875
No 19
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.53 E-value=0.0057 Score=35.34 Aligned_cols=56 Identities=7% Similarity=0.097 Sum_probs=42.9
Q ss_pred EEEEe-CCeEEEhhHHHhhccCHHHHhhCCC---CCCCCCeEEcCCCCHHHHHHhhccccc
Q psy16401 35 CALSA-EGKTIQAHKVLLSACSPYFAVSLPI---PKRGMPETFSPDLRFYETDGILPFARE 91 (94)
Q Consensus 35 v~~~~-~~~~~~~Hk~vL~a~S~~f~~~f~~---~~~~~~~i~l~~~~~~~~~~lL~f~Yt 91 (94)
+++.. +|..|.+.+.+.. .|..++.++.. .......|.+++++...++.+++|++-
T Consensus 4 v~L~S~Dg~~f~v~~~~a~-~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~ 63 (104)
T smart00512 4 IKLISSDGEVFEVEREVAR-QSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEH 63 (104)
T ss_pred EEEEeCCCCEEEecHHHHH-HHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHH
Confidence 44544 7788999999774 78899998843 112225899999999999999999953
No 20
>KOG2716|consensus
Probab=95.80 E-value=0.024 Score=37.54 Aligned_cols=58 Identities=22% Similarity=0.267 Sum_probs=46.3
Q ss_pred EEEEeCCeEEEhhHHHhhccCHHHHhhCCCC---CC-CCCeEEcCCCCHHHHHHhhcccccCC
Q psy16401 35 CALSAEGKTIQAHKVLLSACSPYFAVSLPIP---KR-GMPETFSPDLRFYETDGILPFAREDL 93 (94)
Q Consensus 35 v~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~~---~~-~~~~i~l~~~~~~~~~~lL~f~Ytg~ 93 (94)
+.+-+||+.|...+.-|.....+|+.|+... +. ....|-+ |=+|.-|+.+|.||-.|.
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI-DRSpKHF~~ILNfmRdGd 68 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI-DRSPKHFDTILNFMRDGD 68 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe-cCChhHHHHHHHhhhccc
Confidence 4578999999999999999999999999653 22 2233444 679999999999998775
No 21
>KOG3473|consensus
Probab=93.74 E-value=0.13 Score=29.76 Aligned_cols=54 Identities=9% Similarity=0.061 Sum_probs=40.4
Q ss_pred EEEEe-CCeEEEhhHHHhhccCHHHHhhCCC----CCCCCCeEEcCCCCHHHHHHhhccc
Q psy16401 35 CALSA-EGKTIQAHKVLLSACSPYFAVSLPI----PKRGMPETFSPDLRFYETDGILPFA 89 (94)
Q Consensus 35 v~~~~-~~~~~~~Hk~vL~a~S~~f~~~f~~----~~~~~~~i~l~~~~~~~~~~lL~f~ 89 (94)
|.++. +|.+|-.-|. +|.-|.-.|+|+.+ .+...+++.+++++...++.+-+|+
T Consensus 19 VkLvS~Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl 77 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYL 77 (112)
T ss_pred eEeecCCCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHh
Confidence 44444 4556655544 45568899999964 4667789999999999999999887
No 22
>KOG1987|consensus
Probab=93.61 E-value=0.025 Score=38.14 Aligned_cols=53 Identities=17% Similarity=0.004 Sum_probs=42.6
Q ss_pred CCeEEEhhHHHhhccCHHHHhhCCC--CCCCCCeEEcCCCCHHHHHHhhcccccC
Q psy16401 40 EGKTIQAHKVLLSACSPYFAVSLPI--PKRGMPETFSPDLRFYETDGILPFARED 92 (94)
Q Consensus 40 ~~~~~~~Hk~vL~a~S~~f~~~f~~--~~~~~~~i~l~~~~~~~~~~lL~f~Ytg 92 (94)
+++.+.+|+.++++++++|+.++.. .+.....+.+.+..+..++.+..|.|+.
T Consensus 108 ~~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~ 162 (297)
T KOG1987|consen 108 SNGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLP 162 (297)
T ss_pred cCcEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEec
Confidence 3567999999999999999999854 2333445577888999999999999974
No 23
>KOG2714|consensus
Probab=92.52 E-value=0.32 Score=35.10 Aligned_cols=59 Identities=20% Similarity=0.149 Sum_probs=44.1
Q ss_pred EEEEeCCeEEEhhHHHhhccC--HHHHhhCCC----CCCCCCeEEcCCCCHHHHHHhhcccccCCC
Q psy16401 35 CALSAEGKTIQAHKVLLSACS--PYFAVSLPI----PKRGMPETFSPDLRFYETDGILPFAREDLL 94 (94)
Q Consensus 35 v~~~~~~~~~~~Hk~vL~a~S--~~f~~~f~~----~~~~~~~i~l~~~~~~~~~~lL~f~Ytg~l 94 (94)
|.+.|||+.|.--+.-|+... .+|-+++.+ ...+...|-+ +=+|+.|..||+|+-||+|
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI-DRDPdlFaviLn~LRTg~L 77 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI-DRDPDLFAVILNLLRTGDL 77 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEe-cCCchHHHHHHHHHhcCCC
Confidence 678899999998888877655 688888853 2222233433 6789999999999999975
No 24
>KOG1724|consensus
Probab=83.37 E-value=1.6 Score=27.49 Aligned_cols=52 Identities=6% Similarity=0.081 Sum_probs=37.5
Q ss_pred eCCeEEEhhHHHhhccCHHHHhhCCCCCCCC--CeEEcCCCCHHHHHHhhccccc
Q psy16401 39 AEGKTIQAHKVLLSACSPYFAVSLPIPKRGM--PETFSPDLRFYETDGILPFARE 91 (94)
Q Consensus 39 ~~~~~~~~Hk~vL~a~S~~f~~~f~~~~~~~--~~i~l~~~~~~~~~~lL~f~Yt 91 (94)
.+|+.|.+-..+.. .|..+..++....... ..|.+++|+...|..+|+|++-
T Consensus 12 sDG~~f~ve~~~a~-~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~ 65 (162)
T KOG1724|consen 12 SDGEIFEVEEEVAR-QSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKK 65 (162)
T ss_pred cCCceeehhHHHHH-HhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHH
Confidence 36778887777665 4666666663222222 5899999999999999999974
No 25
>PF09593 Pathogen_betaC1: Beta-satellite pathogenicity beta C1 protein; InterPro: IPR018583 Cotton leaf-curl disease - CLCuD - is of major economic importance in cotton-growing areas of the far-east. The infectious agent appears to be a single-stranded DNA molecule of approx 1350 nucleotides in length, which, when inoculated with the Begomovirus into cotton, induces symptoms typical of CLCuD. This molecule requires the Begomovirus for replication and encapsidation []. DNA beta encodes a single protein, betaC1. The intracellular distribution of betaC1 is consistent with the hypothesis that it has a role in transporting the DNA A of Begomovirus from the nuclear site of replication to the plasmodesmatal exit sites of the infected cell. The DNA beta-encoded protein, betaC1, is the determinant of both pathogenicity and suppression of gene silencing [].
Probab=80.08 E-value=1 Score=26.90 Aligned_cols=59 Identities=22% Similarity=0.113 Sum_probs=37.2
Q ss_pred cEEEEeCCeEEEhhHHHhhccCHHHHhhCCCCCCCCCeEEcC---CCCHHHHHHhhcccccCC
Q psy16401 34 DCALSAEGKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSP---DLRFYETDGILPFAREDL 93 (94)
Q Consensus 34 Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~~~~~~~~i~l~---~~~~~~~~~lL~f~Ytg~ 93 (94)
||.+. ++..+.+|--+++.+||.+...=..-+=....+..| +--.+.++..|+++|.|.
T Consensus 15 dVrl~-~~~~i~V~i~l~ST~sP~l~k~~f~IpY~~~~ii~PFDFNglEe~I~~~l~~mY~~s 76 (117)
T PF09593_consen 15 DVRLM-EDMSIFVHIQLFSTRSPALIKKKFIIPYTHEGIIPPFDFNGLEEGIKNTLKIMYKDS 76 (117)
T ss_pred EEEec-CCCEEEEEEEEEECCChHHheEEEEEeccCCCeECCcccCcHHHHHHHHHHHHhCCC
Confidence 44443 567899999999999998853211111111223222 455678899999999873
No 26
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=79.21 E-value=2.6 Score=29.38 Aligned_cols=50 Identities=14% Similarity=0.127 Sum_probs=41.3
Q ss_pred eEEEhhHHHhhccCHHHHhhCCC---CCCCCCeEEcC-CCCHHHHHHhhccccc
Q psy16401 42 KTIQAHKVLLSACSPYFAVSLPI---PKRGMPETFSP-DLRFYETDGILPFARE 91 (94)
Q Consensus 42 ~~~~~Hk~vL~a~S~~f~~~f~~---~~~~~~~i~l~-~~~~~~~~~lL~f~Yt 91 (94)
+.|.|.+-+|-..=.||+..+.. .....++|.|. +.+...|+.+++|+..
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~ 67 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKG 67 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhc
Confidence 67999999999999999999953 44555667776 7888999999999865
No 27
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=71.48 E-value=5.7 Score=24.33 Aligned_cols=51 Identities=12% Similarity=0.040 Sum_probs=36.2
Q ss_pred EeCCeEEEhhHHHhhccCHHHHhhCCCCCCCCCeEEcCCCCHHHHHHhhccc
Q psy16401 38 SAEGKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSPDLRFYETDGILPFA 89 (94)
Q Consensus 38 ~~~~~~~~~Hk~vL~a~S~~f~~~f~~~~~~~~~i~l~~~~~~~~~~lL~f~ 89 (94)
..+|..|.+.+.+ |-+|-..+.++.......-.+..++++..+|..+++|+
T Consensus 8 s~dge~F~vd~~i-AerSiLikN~l~d~~~~n~p~p~pnVrSsvl~kv~ew~ 58 (158)
T COG5201 8 SIDGEIFRVDENI-AERSILIKNMLCDSTACNYPIPAPNVRSSVLMKVQEWM 58 (158)
T ss_pred ecCCcEEEehHHH-HHHHHHHHHHhccccccCCCCcccchhHHHHHHHHHHH
Confidence 3466778776654 55778888877542233334677899999999999987
No 28
>KOG1665|consensus
Probab=64.41 E-value=11 Score=25.48 Aligned_cols=59 Identities=15% Similarity=0.093 Sum_probs=38.5
Q ss_pred EEEEeCCeEEEhhHHHhhcc--CHHHHhhCCC-----CCCCCCeEEcCCCCHHHHHHhhcccccCCC
Q psy16401 35 CALSAEGKTIQAHKVLLSAC--SPYFAVSLPI-----PKRGMPETFSPDLRFYETDGILPFAREDLL 94 (94)
Q Consensus 35 v~~~~~~~~~~~Hk~vL~a~--S~~f~~~f~~-----~~~~~~~i~l~~~~~~~~~~lL~f~Ytg~l 94 (94)
|.+-++|+.|.--..-|..+ -+-+.+||.. .+.....+.| +-+|..|+.||.|+-.|++
T Consensus 11 vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lI-DRsp~yFepIlNyLr~Gq~ 76 (302)
T KOG1665|consen 11 VRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLI-DRSPKYFEPILNYLRDGQI 76 (302)
T ss_pred heeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEE-ccCchhhHHHHHHHhcCce
Confidence 56778888887544444333 3456778843 2233333443 6789999999999988864
No 29
>KOG3342|consensus
Probab=59.74 E-value=6.8 Score=24.68 Aligned_cols=19 Identities=32% Similarity=0.564 Sum_probs=14.3
Q ss_pred ccE-EEEeCCeEEE-hhHHHh
Q psy16401 33 VDC-ALSAEGKTIQ-AHKVLL 51 (94)
Q Consensus 33 ~Dv-~~~~~~~~~~-~Hk~vL 51 (94)
.|+ ++.++|+++| +||+|-
T Consensus 81 GdivVf~vegR~IPiVHRviK 101 (180)
T KOG3342|consen 81 GDIVVFKVEGREIPIVHRVIK 101 (180)
T ss_pred ccEEEEEECCccCchhHHHHH
Confidence 455 4578999998 688874
No 30
>KOG4390|consensus
Probab=56.72 E-value=16 Score=26.68 Aligned_cols=57 Identities=19% Similarity=0.152 Sum_probs=39.4
Q ss_pred EEEEeCCeEEEhhHHHhhccCHHHHhhCCCCCCC-----CCeEEcCCCCHHHHHHhhcccccCCC
Q psy16401 35 CALSAEGKTIQAHKVLLSACSPYFAVSLPIPKRG-----MPETFSPDLRFYETDGILPFAREDLL 94 (94)
Q Consensus 35 v~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~~~~~-----~~~i~l~~~~~~~~~~lL~f~Ytg~l 94 (94)
+++.+.|+.|.-+|.-|-. |-..++++.+.. ...-.+-+-+|+.|+.+|.|--||++
T Consensus 42 lvlNvSGrRFeTWknTLer---yPdTLLGSsEkeFFy~~dt~eYFFDRDPdiFRhvLnFYRTGkL 103 (632)
T KOG4390|consen 42 LVLNVSGRRFETWKNTLER---YPDTLLGSSEKEFFYDEDTGEYFFDRDPDIFRHVLNFYRTGKL 103 (632)
T ss_pred EEEeccccchhHHHhHHHh---CchhhhCCcchheeecCCcccccccCChHHHHHHHHHhhcCcc
Confidence 4556789999999998875 444555543221 11223346799999999999999975
No 31
>KOG3863|consensus
Probab=56.34 E-value=1.1 Score=33.63 Aligned_cols=38 Identities=24% Similarity=0.421 Sum_probs=31.8
Q ss_pred HHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCC
Q psy16401 22 VFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPI 64 (94)
Q Consensus 22 ~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~ 64 (94)
.++..+.+...||++..+.++.|.+|+ ++.||.....+
T Consensus 4 ~~~~qr~~~~~~~~~~~~~~~~f~~~~-----~~e~~~~~~~G 41 (604)
T KOG3863|consen 4 SLNDQRKKDVLCDVTAFVERQGFRAHR-----CSEYFTSRIVG 41 (604)
T ss_pred cccccccccccchhHHHHhccccccee-----ccchhhhhhcc
Confidence 456678888999999999999999999 88999766533
No 32
>KOG1778|consensus
Probab=52.72 E-value=2.4 Score=29.58 Aligned_cols=57 Identities=18% Similarity=0.173 Sum_probs=38.7
Q ss_pred EEEeCCeEEEhhHHHhhccCHHHHhhCCC--CCCCCCeEEcCCCCHHHHHHhhcccccC
Q psy16401 36 ALSAEGKTIQAHKVLLSACSPYFAVSLPI--PKRGMPETFSPDLRFYETDGILPFARED 92 (94)
Q Consensus 36 ~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~--~~~~~~~i~l~~~~~~~~~~lL~f~Ytg 92 (94)
++..+...+++|+.+|+..|+.|...... .......+.+.+++...+..+.+++|.+
T Consensus 30 ~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~ 88 (319)
T KOG1778|consen 30 IVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSS 88 (319)
T ss_pred hhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccc
Confidence 33445567899999999999999866532 1223344555567777777788887764
No 33
>KOG2715|consensus
Probab=51.54 E-value=16 Score=23.45 Aligned_cols=60 Identities=18% Similarity=0.177 Sum_probs=41.1
Q ss_pred EEEEeCCeEEEhhHHHhhccCHHHHhhCCCCC------CCCCeEEcCCCCHHHHHHhhcccccCCC
Q psy16401 35 CALSAEGKTIQAHKVLLSACSPYFAVSLPIPK------RGMPETFSPDLRFYETDGILPFAREDLL 94 (94)
Q Consensus 35 v~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~~~------~~~~~i~l~~~~~~~~~~lL~f~Ytg~l 94 (94)
|.+.+||+.|.--|.-|+.-+..|-..|...+ ....--.+-+=+|..|-.+|.|+-.|++
T Consensus 23 VRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgkl 88 (210)
T KOG2715|consen 23 VRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKL 88 (210)
T ss_pred EEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchh
Confidence 56678999999999999988866655442211 1111223346788899999999987764
No 34
>KOG3840|consensus
Probab=49.68 E-value=25 Score=24.84 Aligned_cols=61 Identities=10% Similarity=0.083 Sum_probs=39.6
Q ss_pred cEEEEeCCeEEEhhHHHhhccC-HHHHhhCCC-----CCCCCCeEEc-CCCCHHHHHHhhcccccCCC
Q psy16401 34 DCALSAEGKTIQAHKVLLSACS-PYFAVSLPI-----PKRGMPETFS-PDLRFYETDGILPFAREDLL 94 (94)
Q Consensus 34 Dv~~~~~~~~~~~Hk~vL~a~S-~~f~~~f~~-----~~~~~~~i~l-~~~~~~~~~~lL~f~Ytg~l 94 (94)
-++..+++..|.+-+.+|.+.= .-+-.+|.+ ..+...+..+ ++++..+|+.||+|.-||.|
T Consensus 97 ~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~i 164 (438)
T KOG3840|consen 97 KVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTM 164 (438)
T ss_pred ceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCce
Confidence 3566777778888777776532 122344432 2334444544 59999999999999888854
No 35
>KOG3713|consensus
Probab=44.80 E-value=75 Score=23.68 Aligned_cols=59 Identities=19% Similarity=0.001 Sum_probs=36.0
Q ss_pred cEEEEeCCeEEEhhHHHhhccCHHHH--hhCC------------CCCCCCCeEEcCCCCHHHHHHhhcccccCCC
Q psy16401 34 DCALSAEGKTIQAHKVLLSACSPYFA--VSLP------------IPKRGMPETFSPDLRFYETDGILPFAREDLL 94 (94)
Q Consensus 34 Dv~~~~~~~~~~~Hk~vL~a~S~~f~--~~f~------------~~~~~~~~i~l~~~~~~~~~~lL~f~Ytg~l 94 (94)
-+++.|||..+..-+..|.. .|.=| .+.. .-....++..+ +=+|..|..+|+|.+||++
T Consensus 32 ~i~lNVGG~r~~l~~~tL~~-~P~TRL~rL~~~~~~~~~l~~cDdyd~~~~EyfF-DR~P~~F~~Vl~fYrtGkL 104 (477)
T KOG3713|consen 32 RVRLNVGGTRHELYWSTLKR-FPLTRLGRLADCNSHEERLELCDDYDPVTNEYFF-DRHPGAFAYVLNFYRTGKL 104 (477)
T ss_pred EEEEeeCCeeEEehHHHHhh-CchhHHHHHHhcccchhhhhhccccCcccCeeee-ccChHHHHHHHHHHhcCee
Confidence 46778899877766655554 22111 1111 01223344444 5689999999999999985
No 36
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=43.66 E-value=34 Score=20.01 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=14.2
Q ss_pred EEEEeCC-eEEEhhHHHhhc
Q psy16401 35 CALSAEG-KTIQAHKVLLSA 53 (94)
Q Consensus 35 v~~~~~~-~~~~~Hk~vL~a 53 (94)
+++.+.. ....||+.||+.
T Consensus 101 v~LlC~e~dp~~CHR~iLa~ 120 (122)
T PF04343_consen 101 VALLCAEKDPERCHRRILAE 120 (122)
T ss_pred eEEEEEecChhcCcHHHHHH
Confidence 7777744 456799999984
No 37
>PF06404 PSK: Phytosulfokine precursor protein (PSK); InterPro: IPR009438 This family consists of several plant specific phytosulfokine precursor proteins. Phytosulfokines, are active as either a pentapeptide or a C-terminally truncated tetrapeptide. These compounds were first isolated because of their ability to stimulate cell division in somatic embryo cultures of Asparagus officinalis [].; GO: 0008083 growth factor activity, 0008283 cell proliferation, 0005576 extracellular region
Probab=39.70 E-value=18 Score=20.06 Aligned_cols=15 Identities=7% Similarity=-0.075 Sum_probs=11.1
Q ss_pred CHHHHHHhhcccccC
Q psy16401 78 RFYETDGILPFARED 92 (94)
Q Consensus 78 ~~~~~~~lL~f~Ytg 92 (94)
....+.+-++||||-
T Consensus 63 ~RRtL~AHlDYIYTQ 77 (81)
T PF06404_consen 63 MRRTLAAHLDYIYTQ 77 (81)
T ss_pred HHHHHHHHhhheecc
Confidence 445566888999994
No 38
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=39.15 E-value=55 Score=20.56 Aligned_cols=26 Identities=12% Similarity=0.225 Sum_probs=20.6
Q ss_pred cHHHHHHHHHHHHhCCCcccEEEEeCCe
Q psy16401 15 HQNTLISVFHNLLNSSTLVDCALSAEGK 42 (94)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~Dv~~~~~~~ 42 (94)
-+..+...+.+.+..+ .|+.|.+||-
T Consensus 81 sSe~fA~~l~~~~~~G--~~i~f~IGG~ 106 (155)
T COG1576 81 SSEEFADFLERLRDDG--RDISFLIGGA 106 (155)
T ss_pred ChHHHHHHHHHHHhcC--CeEEEEEeCc
Confidence 3556777788888888 8999999874
No 39
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=37.58 E-value=82 Score=18.09 Aligned_cols=52 Identities=13% Similarity=0.028 Sum_probs=35.5
Q ss_pred EEEEeCC--eEEEhhHHHhhccCHHHHhhCCCC-----CCCCCeEEcCCCCHHHHHHhhccc
Q psy16401 35 CALSAEG--KTIQAHKVLLSACSPYFAVSLPIP-----KRGMPETFSPDLRFYETDGILPFA 89 (94)
Q Consensus 35 v~~~~~~--~~~~~Hk~vL~a~S~~f~~~f~~~-----~~~~~~i~l~~~~~~~~~~lL~f~ 89 (94)
+.+.+|+ +.|-+....|. .|.|+.++... -.....|.+| ++...|+.+|..+
T Consensus 41 ~~VyVG~~~~Rfvvp~~~L~--hp~f~~LL~~aeeEfG~~~~G~l~iP-C~~~~Fe~~l~~l 99 (100)
T PF02519_consen 41 FAVYVGEERRRFVVPVSYLN--HPLFQELLEQAEEEFGFDQDGPLTIP-CDVVLFEHLLWLL 99 (100)
T ss_pred EEEEeCccceEEEechHHcC--chhHHHHHHHHhhhcCcCCCCcEEee-CCHHHHHHHHHHh
Confidence 4566665 45777777776 68999998431 1224567777 7888899888754
No 40
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=37.49 E-value=69 Score=18.94 Aligned_cols=75 Identities=8% Similarity=-0.020 Sum_probs=42.2
Q ss_pred eCCcHHHHHHHHHHHHhCCCcccEEEEeCCeEEE----hhHHHhhccCHHHH--hhC--CCC------CCCCCeEEcCCC
Q psy16401 12 WNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQ----AHKVLLSACSPYFA--VSL--PIP------KRGMPETFSPDL 77 (94)
Q Consensus 12 ~~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~----~Hk~vL~a~S~~f~--~~f--~~~------~~~~~~i~l~~~ 77 (94)
.++....+.+.+.++.++ +|+++..||.-.- ....+-...-..|. ..- ... -.+...+.+|+.
T Consensus 41 v~Dd~~~i~~~i~~~~~~---~DlvittGG~g~g~~D~t~~ai~~~g~~~~~g~~~~~~pg~~~~~~~~~~~~i~~LPG~ 117 (133)
T cd00758 41 VPDDADSIRAALIEASRE---ADLVLTTGGTGVGRRDVTPEALAELGEREAHGKGVALAPGSRTAFGIIGKVLIINLPGS 117 (133)
T ss_pred cCCCHHHHHHHHHHHHhc---CCEEEECCCCCCCCCcchHHHHHHhcCEEeccCcccccCCCceEEEEECCEEEEECCCC
Confidence 467888888888888665 7999999874322 22333222222222 100 000 123346788888
Q ss_pred CHHHHHHhhccc
Q psy16401 78 RFYETDGILPFA 89 (94)
Q Consensus 78 ~~~~~~~lL~f~ 89 (94)
+......+..|+
T Consensus 118 p~a~~~~~~~~v 129 (133)
T cd00758 118 PKSALTTFEALV 129 (133)
T ss_pred HHHHHHHHHHhh
Confidence 777766655544
No 41
>PRK09738 small toxic polypeptide; Provisional
Probab=35.26 E-value=57 Score=16.62 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=18.3
Q ss_pred HHhCCCcccEEEEeCCeEEEhh
Q psy16401 26 LLNSSTLVDCALSAEGKTIQAH 47 (94)
Q Consensus 26 ~~~~~~~~Dv~~~~~~~~~~~H 47 (94)
+...+.+|++.+.-|+.++.|.
T Consensus 24 ~l~r~sLCEl~i~~g~~evaA~ 45 (52)
T PRK09738 24 YLTRKSLCELRYRDGDREVAAF 45 (52)
T ss_pred HHccCCceEEEEecCCEEEEEE
Confidence 4567889999999999988764
No 42
>PF01848 HOK_GEF: Hok/gef family; InterPro: IPR000021 The hok/gef family of Gram-negative bacterial proteins are toxic to cells when over-expressed, killing the cells from within by interfering with a vital function in the cell membrane []. Some family members (flm) increase the stability of unstable RNA [], some (pnd) induce the degradation of stable RNA at higher than optimum growth temperatures [], while others affect the release of cellular magnesium by membrane alterations []. The proteins are short (50-70 residues), consisting of an N-terminal hydrophobic (possibly membrane spanning) domain, and a C-terminal periplasmic region, which contains the toxic domain. The C-terminal region contains a conserved cysteine residue that mediates homo-dimerisation in the gef protein, although dimerisation is not necessary for the toxic effect [].; GO: 0016020 membrane
Probab=34.81 E-value=61 Score=15.77 Aligned_cols=22 Identities=14% Similarity=0.268 Sum_probs=18.0
Q ss_pred HHhCCCcccEEEEeCCeEEEhh
Q psy16401 26 LLNSSTLVDCALSAEGKTIQAH 47 (94)
Q Consensus 26 ~~~~~~~~Dv~~~~~~~~~~~H 47 (94)
+...+.+|.+.+..|+.++.|.
T Consensus 19 ~l~r~sLCEl~i~~g~~evaA~ 40 (43)
T PF01848_consen 19 WLTRDSLCELRIKDGNTEVAAF 40 (43)
T ss_pred HHhccCcEEEEEecCCEEEEEE
Confidence 4557889999999999988763
No 43
>PF04699 P16-Arc: ARP2/3 complex 16 kDa subunit (p16-Arc); InterPro: IPR006789 The Arp2/3 protein complex has been implicated in the control of actin polymerisation. The human complex consists of seven subunits which include the actin related proteins Arp2 and Arp3, and five others referred to as p41-Arc, p34-Arc, p21-Arc, p20-Arc, and p16-Arc. The precise function of p16-Arc is currently unknown. Its structure consists of a single domain containing a bundle of seven alpha helices [, ].; GO: 0030833 regulation of actin filament polymerization, 0005856 cytoskeleton; PDB: 3DWL_G 1TYQ_G 1U2V_G 2P9U_G 2P9L_G 1K8K_G 3DXM_G 2P9N_G 3DXK_G 2P9I_G ....
Probab=31.41 E-value=17 Score=22.72 Aligned_cols=19 Identities=11% Similarity=0.137 Sum_probs=15.8
Q ss_pred cCCCCHHHHHHhhcccccC
Q psy16401 74 SPDLRFYETDGILPFARED 92 (94)
Q Consensus 74 l~~~~~~~~~~lL~f~Ytg 92 (94)
+..++.+....+++|+|.|
T Consensus 95 v~~L~~~~~D~LMKYiYkg 113 (152)
T PF04699_consen 95 VKSLDSDQQDILMKYIYKG 113 (152)
T ss_dssp HCCS-HHHHHHHHHHHHHH
T ss_pred HHhCCHHHHhHHHHHHHHh
Confidence 4678999999999999976
No 44
>PRK09759 small toxic polypeptide; Provisional
Probab=30.21 E-value=80 Score=15.91 Aligned_cols=22 Identities=9% Similarity=0.161 Sum_probs=18.1
Q ss_pred HHhCCCcccEEEEeCCeEEEhh
Q psy16401 26 LLNSSTLVDCALSAEGKTIQAH 47 (94)
Q Consensus 26 ~~~~~~~~Dv~~~~~~~~~~~H 47 (94)
+...+.+|.+.+.-|+.++.|.
T Consensus 22 ~l~r~sLCEl~i~~g~~evaA~ 43 (50)
T PRK09759 22 WMIRDSLCELHIKQGSYELAAF 43 (50)
T ss_pred HHhCCCceEEEEecCCEEEEEE
Confidence 4567889999999999988764
No 45
>PF10905 DUF2695: Protein of unknown function (DUF2695); InterPro: IPR024248 This bacterial family of proteins has no known function.
Probab=23.77 E-value=1.1e+02 Score=15.56 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=14.0
Q ss_pred HHHHHHHhCCCcccEEEEe
Q psy16401 21 SVFHNLLNSSTLVDCALSA 39 (94)
Q Consensus 21 ~~l~~~~~~~~~~Dv~~~~ 39 (94)
..+.-+++.+-+||+.|..
T Consensus 34 ~vl~~l~~nGg~CDCEVl~ 52 (53)
T PF10905_consen 34 DVLEWLRENGGYCDCEVLY 52 (53)
T ss_pred HHHHHHHHcCCCcceeeec
Confidence 3455677889999998764
No 46
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=23.57 E-value=1.7e+02 Score=17.35 Aligned_cols=29 Identities=10% Similarity=0.268 Sum_probs=23.1
Q ss_pred eeCCcHHHHHHHHHHHHhCCCcccEEEEeCCe
Q psy16401 11 RWNNHQNTLISVFHNLLNSSTLVDCALSAEGK 42 (94)
Q Consensus 11 ~~~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~ 42 (94)
..++....+.+.+.+..++. |+++..||.
T Consensus 38 ~v~Dd~~~i~~~l~~~~~~~---D~VittGG~ 66 (144)
T PF00994_consen 38 IVPDDPDAIKEALRRALDRA---DLVITTGGT 66 (144)
T ss_dssp EEESSHHHHHHHHHHHHHTT---SEEEEESSS
T ss_pred EECCCHHHHHHHHHhhhccC---CEEEEcCCc
Confidence 34688888999997776665 999999874
No 47
>PRK04021 hypothetical protein; Reviewed
Probab=22.70 E-value=98 Score=17.55 Aligned_cols=43 Identities=14% Similarity=0.110 Sum_probs=31.6
Q ss_pred EhhHHHhhccCHHHHhhC---CCCCCCCCeEEcCCCCHHHHHHhhc
Q psy16401 45 QAHKVLLSACSPYFAVSL---PIPKRGMPETFSPDLRFYETDGILP 87 (94)
Q Consensus 45 ~~Hk~vL~a~S~~f~~~f---~~~~~~~~~i~l~~~~~~~~~~lL~ 87 (94)
.|++.++.-=|..|..-. .+..+....+.+.+++++.+...|.
T Consensus 46 kAN~ali~~LAk~l~~~I~I~~G~~sr~K~v~i~g~~~e~l~~~L~ 91 (92)
T PRK04021 46 KANKELVKFFSKLLGAEVEIIRGETSREKDLLVKGISLEEVKKKLK 91 (92)
T ss_pred hHHHHHHHHHHHHhCCCEEEEecCCcCceEEEEecCCHHHHHHHhc
Confidence 478888876666665311 3467788899999999999888775
No 48
>KOG2485|consensus
Probab=22.25 E-value=2.4e+02 Score=20.12 Aligned_cols=46 Identities=24% Similarity=0.375 Sum_probs=36.4
Q ss_pred CCcHHHHHHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCC
Q psy16401 13 NNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLP 63 (94)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~ 63 (94)
.-++.++.+.++.+.+.=.+.|+++.+-+..+| |+.+-+.|+...+
T Consensus 27 ~wfpgHmakalr~i~~~l~~~D~iiEvrDaRiP-----Lssrn~~~~~~~~ 72 (335)
T KOG2485|consen 27 RWFPGHMAKALRAIQNRLPLVDCIIEVRDARIP-----LSSRNELFQDFLP 72 (335)
T ss_pred ccCchHHHHHHHHHHhhcccccEEEEeeccccC-----CccccHHHHHhcC
Confidence 457778888888888888889999999887776 6677778877654
No 49
>KOG3368|consensus
Probab=22.09 E-value=38 Score=20.79 Aligned_cols=25 Identities=12% Similarity=0.208 Sum_probs=20.0
Q ss_pred CCCCeEEcCCCCHHHHHHhhccccc
Q psy16401 67 RGMPETFSPDLRFYETDGILPFARE 91 (94)
Q Consensus 67 ~~~~~i~l~~~~~~~~~~lL~f~Yt 91 (94)
.+-..|...+.....++.+|.++|+
T Consensus 78 tglk~vl~Tdpk~~~ir~vLq~IYs 102 (140)
T KOG3368|consen 78 TGLKFVLNTDPKAGSIRDVLQYIYS 102 (140)
T ss_pred CCcEEEEecCCCcccHHHHHHHHHH
Confidence 3445566678889999999999997
No 50
>COG0350 Ada Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]
Probab=21.71 E-value=21 Score=22.53 Aligned_cols=12 Identities=25% Similarity=0.362 Sum_probs=8.9
Q ss_pred EEEhhHHHhhcc
Q psy16401 43 TIQAHKVLLSAC 54 (94)
Q Consensus 43 ~~~~Hk~vL~a~ 54 (94)
.+||||+|=+..
T Consensus 136 iIPCHRVig~~G 147 (168)
T COG0350 136 IIPCHRVIGADG 147 (168)
T ss_pred EecCeEeEcCCC
Confidence 389999886554
No 51
>PF14615 Rsa3: Ribosome-assembly protein 3
Probab=21.11 E-value=1.2e+02 Score=14.94 Aligned_cols=19 Identities=11% Similarity=0.200 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhCCCccc
Q psy16401 16 QNTLISVFHNLLNSSTLVD 34 (94)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~D 34 (94)
...+.++|+++|+...|.+
T Consensus 11 t~efgdDLd~lR~~~dF~~ 29 (47)
T PF14615_consen 11 TDEFGDDLDELRKAPDFTD 29 (47)
T ss_pred HHHHHHHHHHHhcCCCCCc
Confidence 3456678899999888866
No 52
>COG1531 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.60 E-value=42 Score=18.56 Aligned_cols=15 Identities=27% Similarity=0.428 Sum_probs=9.8
Q ss_pred EEEeCCeEEEhhHHH
Q psy16401 36 ALSAEGKTIQAHKVL 50 (94)
Q Consensus 36 ~~~~~~~~~~~Hk~v 50 (94)
.+..++..+|.||.|
T Consensus 48 ~~~~~~~~IP~HRIv 62 (77)
T COG1531 48 YLLYQGTYIPYHRIV 62 (77)
T ss_pred EEEecCceeeeEEEE
Confidence 444566777888765
No 53
>PF06497 DUF1098: Protein of unknown function (DUF1098); InterPro: IPR009477 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf102; it is a family of uncharacterised viral proteins.
Probab=20.55 E-value=36 Score=19.57 Aligned_cols=77 Identities=10% Similarity=-0.063 Sum_probs=43.4
Q ss_pred CcHHHHHHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCCCCCCCCeEEcCCCCHHHHHHhhcccccCC
Q psy16401 14 NHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSPDLRFYETDGILPFAREDL 93 (94)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~~~~~~~~i~l~~~~~~~~~~lL~f~Ytg~ 93 (94)
.....+++.|++. ..-.++++.=.+..=..---+|+..|...+.++..-+...+.|.+.-+....+-.+|.=+|..+
T Consensus 18 ~~~~~lL~~Ln~~---~tva~~IlnD~S~~K~~sl~~Ls~~S~~aK~il~~Ie~~~~~i~l~~~~avnvL~~lsdIydNk 94 (95)
T PF06497_consen 18 INAEDLLQSLNEN---QTVARLILNDTSENKRNSLKRLSPQSAGAKKILESIEDDDDSIKLNTDDAVNVLRLLSDIYDNK 94 (95)
T ss_pred CCHHHHHHHHHhc---ccHHHHHHcCCCHhHHHHHHHHhHhhHHHHHHHHHHhcCCcceeecHHHHHHHHHHHHHHhhcc
Confidence 4566777777664 2222222211111001223357778888888887666777888885555555555666566654
No 54
>KOG3380|consensus
Probab=20.53 E-value=22 Score=22.20 Aligned_cols=18 Identities=17% Similarity=0.202 Sum_probs=14.4
Q ss_pred CCCCHHHHHHhhcccccC
Q psy16401 75 PDLRFYETDGILPFARED 92 (94)
Q Consensus 75 ~~~~~~~~~~lL~f~Ytg 92 (94)
...+.+....+++|+|.|
T Consensus 96 ~~Ls~e~~DiLmKYiYkG 113 (152)
T KOG3380|consen 96 KKLSTEEIDILMKYIYKG 113 (152)
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 356777888999999987
No 55
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=20.31 E-value=70 Score=14.27 Aligned_cols=13 Identities=31% Similarity=0.291 Sum_probs=8.5
Q ss_pred CCCHHHHHHhhcc
Q psy16401 76 DLRFYETDGILPF 88 (94)
Q Consensus 76 ~~~~~~~~~lL~f 88 (94)
|++.+.++.+|++
T Consensus 16 Gls~eeir~FL~~ 28 (30)
T PF08671_consen 16 GLSKEEIREFLEF 28 (30)
T ss_dssp T--HHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 6788888888765
Done!