Query psy16401
Match_columns 94
No_of_seqs 149 out of 1213
Neff 9.0
Searched_HMMs 29240
Date Fri Aug 16 20:24:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16401.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16401hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ohu_A Transcription regulator 99.9 1.7E-26 5.7E-31 137.4 8.5 91 4-94 4-95 (125)
2 3fkc_A Transcriptional regulat 99.9 2.1E-26 7.3E-31 135.7 8.0 88 4-94 3-90 (116)
3 2z8h_A Transcription regulator 99.9 1.7E-26 5.8E-31 139.6 7.4 94 1-94 4-99 (138)
4 2ihc_A Transcription regulator 99.9 1.4E-26 4.9E-31 137.7 6.7 90 5-94 2-92 (124)
5 2if5_A Zinc finger and BTB dom 99.9 2.5E-26 8.6E-31 135.7 6.7 86 9-94 2-89 (120)
6 1r29_A B-cell lymphoma 6 prote 99.9 4.8E-26 1.6E-30 135.7 7.7 90 5-94 2-93 (127)
7 3b84_A Zinc finger and BTB dom 99.9 1.1E-26 3.6E-31 137.4 4.7 83 10-94 2-84 (119)
8 1buo_A POZ domain, protein (pr 99.9 7.5E-26 2.6E-30 134.0 7.1 85 7-94 3-87 (121)
9 3ga1_A Nucleus accumbens-assoc 99.9 6.2E-26 2.1E-30 135.7 6.5 89 4-94 5-94 (129)
10 2ppi_A Gigaxonin; BTB domain, 99.9 9E-26 3.1E-30 137.5 6.3 90 5-94 20-113 (144)
11 2yy9_A Zinc finger and BTB dom 99.9 2.7E-25 9.3E-30 134.0 6.8 82 11-94 4-85 (135)
12 2vpk_A Myoneurin; transcriptio 99.9 5.7E-25 2E-29 129.2 6.3 80 13-94 3-84 (116)
13 2q81_A MIZ-1 protein; BTB/POZ 99.9 1.3E-25 4.3E-30 132.8 2.3 84 8-94 3-86 (119)
14 3hve_A Gigaxonin; ubiquitin, c 99.9 5.7E-24 1.9E-28 139.3 6.8 90 5-94 4-97 (256)
15 3i3n_A Kelch-like protein 11; 99.9 2.1E-23 7.2E-28 138.1 6.4 90 5-94 5-105 (279)
16 3m5b_A Zinc finger and BTB dom 99.9 1.3E-22 4.4E-27 120.1 5.8 79 7-94 7-85 (119)
17 3htm_A Speckle-type POZ protei 99.9 8.2E-23 2.8E-27 126.6 4.8 83 12-94 14-98 (172)
18 2vkp_A BTB/POZ domain-containi 99.9 3.2E-22 1.1E-26 116.1 4.4 68 26-94 2-75 (109)
19 4eoz_A Speckle-type POZ protei 99.9 7.5E-23 2.6E-27 123.7 1.7 81 14-94 7-89 (145)
20 3hqi_A Speckle-type POZ protei 99.8 3E-20 1E-24 124.4 7.9 80 15-94 157-238 (312)
21 4ajy_C Transcription elongatio 99.1 7.5E-11 2.6E-15 67.1 4.8 55 35-90 4-63 (97)
22 2ast_A S-phase kinase-associat 99.0 2.5E-10 8.6E-15 70.2 5.0 58 35-93 3-65 (159)
23 1fs1_B SKP1, cyclin A/CDK2-ass 98.5 5.1E-08 1.7E-12 58.8 2.7 55 35-92 4-59 (141)
24 1hv2_A Elongin C, ELC1; protei 98.4 8.5E-07 2.9E-11 50.4 5.7 56 35-91 6-63 (99)
25 2fnj_C Transcription elongatio 98.4 4E-07 1.4E-11 51.5 4.0 56 35-91 3-63 (96)
26 2p1m_A SKP1-like protein 1A; F 98.4 5.3E-08 1.8E-12 59.9 0.1 57 35-93 6-63 (160)
27 1vcb_B Protein (elongin C); tu 97.7 6.1E-05 2.1E-09 43.6 5.1 57 34-91 18-79 (112)
28 3drz_A BTB/POZ domain-containi 97.5 0.0002 6.8E-09 41.0 5.0 59 35-94 8-73 (107)
29 3v7d_A Suppressor of kinetocho 97.5 0.00013 4.5E-09 45.0 4.1 57 34-91 8-71 (169)
30 3kvt_A Potassium channel prote 95.3 0.019 6.6E-07 33.1 3.4 59 35-94 7-69 (115)
31 3drx_A BTB/POZ domain-containi 94.2 0.024 8.2E-07 35.9 2.1 59 35-94 14-79 (202)
32 1s1g_A Potassium voltage-gated 93.8 0.083 2.8E-06 30.8 3.8 57 34-94 14-76 (124)
33 2nz0_B Potassium voltage-gated 92.1 0.14 4.9E-06 30.5 3.2 57 34-94 36-98 (140)
34 1t1d_A Protein (potassium chan 90.5 0.21 7.3E-06 28.0 2.7 56 35-94 3-66 (100)
35 1nn7_A Potassium channel KV4.2 90.2 0.075 2.6E-06 30.0 0.6 56 35-94 2-63 (105)
36 2r9r_B Paddle chimera voltage 67.8 3.7 0.00013 29.2 2.7 57 34-94 53-117 (514)
37 4h63_H Mediator of RNA polymer 46.5 6.5 0.00022 24.7 0.9 13 81-93 187-199 (200)
38 2g2c_A Putative molybdenum cof 39.5 54 0.0018 19.4 4.2 30 11-42 50-79 (167)
39 1o6d_A Hypothetical UPF0247 pr 37.0 37 0.0013 20.5 3.2 25 15-41 79-103 (163)
40 1ns5_A Hypothetical protein YB 34.9 38 0.0013 20.3 3.0 25 15-41 80-104 (155)
41 3kbq_A Protein TA0487; structu 28.6 72 0.0025 19.2 3.5 27 12-41 45-71 (172)
42 1k8k_G P16, ARP2/3 complex 16 27.1 10 0.00035 22.8 -0.5 18 75-92 96-113 (151)
43 2hzs_I RNA polymerase II media 23.0 18 0.00063 14.7 0.1 12 82-93 9-20 (27)
No 1
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.94 E-value=1.7e-26 Score=137.35 Aligned_cols=91 Identities=23% Similarity=0.313 Sum_probs=84.4
Q ss_pred CCcceEEeeCCcHHHHHHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCCCCCCCCeEEcCC-CCHHHH
Q psy16401 4 GDQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSPD-LRFYET 82 (94)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~~~~~~~~i~l~~-~~~~~~ 82 (94)
+.....+.++.|+..+++.++++++++.+|||++.++|+.|+|||.||+++|+||+++|.........|.+++ ++++.|
T Consensus 4 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~l~~~~~~~~f 83 (125)
T 3ohu_A 4 GSPMYVYESTVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKNDLVVSLPEEVTARGF 83 (125)
T ss_dssp SCCCEEEECSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCSSCEEECCTTCCHHHH
T ss_pred CCcceeeecHHHHHHHHHHHHHHHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCCCcEEEeCCCCCHHHH
Confidence 4556788999999999999999999999999999999999999999999999999999987666688999998 999999
Q ss_pred HHhhcccccCCC
Q psy16401 83 DGILPFAREDLL 94 (94)
Q Consensus 83 ~~lL~f~Ytg~l 94 (94)
+.+|+|+|||++
T Consensus 84 ~~~l~~iYtg~~ 95 (125)
T 3ohu_A 84 GPLLQFAYTAKL 95 (125)
T ss_dssp HHHHHHHTTSEE
T ss_pred HHHHHhHcCCce
Confidence 999999999964
No 2
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.93 E-value=2.1e-26 Score=135.74 Aligned_cols=88 Identities=17% Similarity=0.176 Sum_probs=81.0
Q ss_pred CCcceEEeeCCcHHHHHHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCCCCCCCCeEEcCCCCHHHHH
Q psy16401 4 GDQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSPDLRFYETD 83 (94)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~~~~~~~~i~l~~~~~~~~~ 83 (94)
+...+.+.+++|+..+++.++++++++.+|||++.++|+.|+|||.||+++|+||+++|... ...|.+++++++.|+
T Consensus 3 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~---~~~i~l~~~~~~~f~ 79 (116)
T 3fkc_A 3 SRKLISATDIQYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA---GQVVELSFIRAEIFA 79 (116)
T ss_dssp -CCCCCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC---CSEEEECSSCHHHHH
T ss_pred cCceeeecCccHHHHHHHHHHHHHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC---CCEEEeCCCCHHHHH
Confidence 34566678899999999999999999999999999999999999999999999999999654 678999999999999
Q ss_pred HhhcccccCCC
Q psy16401 84 GILPFAREDLL 94 (94)
Q Consensus 84 ~lL~f~Ytg~l 94 (94)
.+|+|+|||++
T Consensus 80 ~~l~~~Ytg~~ 90 (116)
T 3fkc_A 80 EILNYIYSSKI 90 (116)
T ss_dssp HHHHHHTTSCC
T ss_pred HHHHhhcCCCc
Confidence 99999999975
No 3
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.93 E-value=1.7e-26 Score=139.58 Aligned_cols=94 Identities=20% Similarity=0.341 Sum_probs=84.8
Q ss_pred CCC-CCcceEEeeCCcHHHHHHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCCCCCCCCeEEcC-CCC
Q psy16401 1 MES-GDQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSP-DLR 78 (94)
Q Consensus 1 M~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~~~~~~~~i~l~-~~~ 78 (94)
|++ +...+.+.++.|+..+++.|+++++++.+|||+|.++|+.|+|||.||+++|+||+++|.+.......|.++ +++
T Consensus 4 m~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~l~~~v~ 83 (138)
T 2z8h_A 4 MSVSESAVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAELTVTLPEEVT 83 (138)
T ss_dssp CCCCTTCCCCCCCSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCTTEEEECCTTSC
T ss_pred CCCCCCCeeEecCCchHHHHHHHHHHHHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCCCceEEeCCCCC
Confidence 444 445688899999999999999999999999999999999999999999999999999997755556789995 999
Q ss_pred HHHHHHhhcccccCCC
Q psy16401 79 FYETDGILPFAREDLL 94 (94)
Q Consensus 79 ~~~~~~lL~f~Ytg~l 94 (94)
++.|+.+|+|+|||++
T Consensus 84 ~~~~~~lL~~~Ytg~~ 99 (138)
T 2z8h_A 84 VKGFEPLIQFAYTAKL 99 (138)
T ss_dssp HHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhcCCCc
Confidence 9999999999999975
No 4
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.93 E-value=1.4e-26 Score=137.72 Aligned_cols=90 Identities=21% Similarity=0.358 Sum_probs=80.7
Q ss_pred CcceEEeeCCcHHHHHHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCCCCCCCCeEEcC-CCCHHHHH
Q psy16401 5 DQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSP-DLRFYETD 83 (94)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~~~~~~~~i~l~-~~~~~~~~ 83 (94)
.+.+.++++.|+..+++.++++++++.+|||++.++|+.|+|||.||+++|+||+++|.+.......|.++ +++++.|+
T Consensus 2 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~i~l~~~v~~~~f~ 81 (124)
T 2ihc_A 2 MSVFAYESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGELNITLPEEVTVKGFE 81 (124)
T ss_dssp -CEEEEECSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC---CEEEECCTTSCHHHHH
T ss_pred CceeeecCcchHHHHHHHHHHHHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCCCceEeecCCcCHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999997755556789995 99999999
Q ss_pred HhhcccccCCC
Q psy16401 84 GILPFAREDLL 94 (94)
Q Consensus 84 ~lL~f~Ytg~l 94 (94)
.+|+|+|||++
T Consensus 82 ~lL~~iYtg~~ 92 (124)
T 2ihc_A 82 PLIQFAYTAKL 92 (124)
T ss_dssp HHHHHHHHSEE
T ss_pred HHHHHhcCCCc
Confidence 99999999964
No 5
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.93 E-value=2.5e-26 Score=135.67 Aligned_cols=86 Identities=19% Similarity=0.276 Sum_probs=78.4
Q ss_pred EEeeCCcHHHHHHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCC--CCCCCCeEEcCCCCHHHHHHhh
Q psy16401 9 CLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPI--PKRGMPETFSPDLRFYETDGIL 86 (94)
Q Consensus 9 ~~~~~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~--~~~~~~~i~l~~~~~~~~~~lL 86 (94)
.++|++|+..+++.++++++++.+|||++.++|+.|+|||.||+++|+||+++|.+ .+.....|.+++++++.|+.+|
T Consensus 2 ~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll 81 (120)
T 2if5_A 2 GIPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALM 81 (120)
T ss_dssp CCCCTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSCHHHHHHHH
T ss_pred CcCccchHHHHHHHHHHHHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCCHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999954 4667789999999999999999
Q ss_pred cccccCCC
Q psy16401 87 PFAREDLL 94 (94)
Q Consensus 87 ~f~Ytg~l 94 (94)
+|+|||++
T Consensus 82 ~~~Yt~~~ 89 (120)
T 2if5_A 82 DFAYTATL 89 (120)
T ss_dssp HHHHHSCC
T ss_pred HHHcCCCC
Confidence 99999975
No 6
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.93 E-value=4.8e-26 Score=135.72 Aligned_cols=90 Identities=18% Similarity=0.269 Sum_probs=80.5
Q ss_pred CcceEEeeCCcHHHHHHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCCCCC-CCCeEEc-CCCCHHHH
Q psy16401 5 DQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPIPKR-GMPETFS-PDLRFYET 82 (94)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~~~~-~~~~i~l-~~~~~~~~ 82 (94)
.....+.+++|+..+++.++++++++.+|||+|.++|+.|+|||.||+++|+||+++|.+... ....|.+ ++++++.|
T Consensus 2 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e~~~~i~l~~~~~~~~f 81 (127)
T 1r29_A 2 SADSQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGF 81 (127)
T ss_dssp ---CCCCCTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHH
T ss_pred CCCccccchhHHHHHHHHHHHHHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccCCCCEEEeCCCCCHHHH
Confidence 345667889999999999999999999999999999999999999999999999999965322 6789999 99999999
Q ss_pred HHhhcccccCCC
Q psy16401 83 DGILPFAREDLL 94 (94)
Q Consensus 83 ~~lL~f~Ytg~l 94 (94)
+.+|+|+|||++
T Consensus 82 ~~ll~~~Ytg~~ 93 (127)
T 1r29_A 82 NILLDFMYTSRL 93 (127)
T ss_dssp HHHHHHHHHSCC
T ss_pred HHHHHHHcCCCc
Confidence 999999999975
No 7
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.93 E-value=1.1e-26 Score=137.43 Aligned_cols=83 Identities=17% Similarity=0.183 Sum_probs=77.6
Q ss_pred EeeCCcHHHHHHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCCCCCCCCeEEcCCCCHHHHHHhhccc
Q psy16401 10 LRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSPDLRFYETDGILPFA 89 (94)
Q Consensus 10 ~~~~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~~~~~~~~i~l~~~~~~~~~~lL~f~ 89 (94)
++|++|+..+++.++++++++.+|||++.++|+.|+|||.||+++|+||+++|.... ...|.+++++++.|+.+|+|+
T Consensus 2 ~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~--~~~i~l~~~~~~~f~~ll~~i 79 (119)
T 3b84_A 2 MSFVQHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS--GGSVVLPAGFAEIFGLLLDFF 79 (119)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT--CCCEEECGGGHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC--CCeEEeCCCCHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999997643 678999999999999999999
Q ss_pred ccCCC
Q psy16401 90 REDLL 94 (94)
Q Consensus 90 Ytg~l 94 (94)
|||++
T Consensus 80 Ytg~~ 84 (119)
T 3b84_A 80 YTGHL 84 (119)
T ss_dssp HHSCC
T ss_pred cCCCC
Confidence 99975
No 8
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.93 E-value=7.5e-26 Score=134.03 Aligned_cols=85 Identities=19% Similarity=0.208 Sum_probs=79.3
Q ss_pred ceEEeeCCcHHHHHHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCCCCCCCCeEEcCCCCHHHHHHhh
Q psy16401 7 HFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSPDLRFYETDGIL 86 (94)
Q Consensus 7 ~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~~~~~~~~i~l~~~~~~~~~~lL 86 (94)
.+.+.+++|+..+++.++++++++.+|||++.++|+.|+|||.||+++|+||+++|.+ +..+|.+++++++.|+.+|
T Consensus 3 ~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~---~~~~i~l~~~~~~~f~~ll 79 (121)
T 1buo_A 3 MIQLQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHR---NSQHYTLDFLSPKTFQQIL 79 (121)
T ss_dssp CCCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTS---CCSEEEECSSCHHHHHHHH
T ss_pred ceeccCcchHHHHHHHHHHHHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcC---CCcEEEeCCCCHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999965 3568999999999999999
Q ss_pred cccccCCC
Q psy16401 87 PFAREDLL 94 (94)
Q Consensus 87 ~f~Ytg~l 94 (94)
+|+|||++
T Consensus 80 ~~~Ytg~~ 87 (121)
T 1buo_A 80 EYAYTATL 87 (121)
T ss_dssp HHHHHSCC
T ss_pred HhhcCCCc
Confidence 99999975
No 9
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.93 E-value=6.2e-26 Score=135.69 Aligned_cols=89 Identities=19% Similarity=0.268 Sum_probs=81.8
Q ss_pred CCcceEEeeCCcHHHHHHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCCCCCCCCeEEcC-CCCHHHH
Q psy16401 4 GDQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSP-DLRFYET 82 (94)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~~~~~~~~i~l~-~~~~~~~ 82 (94)
..+.+.++|++|+..+++.++++++++.+|||++.++|+.|+|||.||+++|+||+++|... ...+|.++ +++++.|
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~--~~~~i~l~~~~~~~~f 82 (129)
T 3ga1_A 5 SAQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS--RSAVVELPAAVQPQSF 82 (129)
T ss_dssp --CEEEEECTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC--CCSEEECCTTCCHHHH
T ss_pred CCceEEeecCcHHHHHHHHHHHHHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC--CCCEEEECCCCCHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999654 67799997 9999999
Q ss_pred HHhhcccccCCC
Q psy16401 83 DGILPFAREDLL 94 (94)
Q Consensus 83 ~~lL~f~Ytg~l 94 (94)
+.+|+|+|||++
T Consensus 83 ~~ll~~iYtg~~ 94 (129)
T 3ga1_A 83 QQILSFCYTGRL 94 (129)
T ss_dssp HHHHHHHHHSEE
T ss_pred HHHHHHHhCCcc
Confidence 999999999964
No 10
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.92 E-value=9e-26 Score=137.47 Aligned_cols=90 Identities=20% Similarity=0.286 Sum_probs=79.2
Q ss_pred CcceEEeeCCcHHHHHHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCC--C--CCCCCeEEcCCCCHH
Q psy16401 5 DQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPI--P--KRGMPETFSPDLRFY 80 (94)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~--~--~~~~~~i~l~~~~~~ 80 (94)
-+.+.+.++.|+..+++.++++++++.+|||+|.++|+.|+|||.||+++|+||+++|.+ . +.....|.+++++++
T Consensus 20 ~~~~~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~ 99 (144)
T 2ppi_A 20 FQSMAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVM 99 (144)
T ss_dssp CCCCCCCCTTHHHHHHHHHHHTTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSCHH
T ss_pred eeeeeecCcchHHHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCHH
Confidence 345778889999999999999999999999999999999999999999999999999953 2 356789999999999
Q ss_pred HHHHhhcccccCCC
Q psy16401 81 ETDGILPFAREDLL 94 (94)
Q Consensus 81 ~~~~lL~f~Ytg~l 94 (94)
+|+.+|+|+|||++
T Consensus 100 ~f~~lL~fiYtg~~ 113 (144)
T 2ppi_A 100 VMREILDYIFSGQI 113 (144)
T ss_dssp HHHHHHHHHTTSCC
T ss_pred HHHHHHHHHhCCCC
Confidence 99999999999975
No 11
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.92 E-value=2.7e-25 Score=133.97 Aligned_cols=82 Identities=17% Similarity=0.151 Sum_probs=72.7
Q ss_pred eeCCcHHHHHHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCCCCCCCCeEEcCCCCHHHHHHhhcccc
Q psy16401 11 RWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSPDLRFYETDGILPFAR 90 (94)
Q Consensus 11 ~~~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~~~~~~~~i~l~~~~~~~~~~lL~f~Y 90 (94)
.+++|...+++.|+++++++.+|||+|.++|+.|+|||.||+++|+||+++|.... ...|.+++++++.|+.+|+|+|
T Consensus 4 ~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~--~~~i~l~~~~~~~f~~lL~fiY 81 (135)
T 2yy9_A 4 GSSGHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT--GGSVVLPAGFAEIFGLLLDFFY 81 (135)
T ss_dssp ---CHHHHHHHHHHHHHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC------CCEEECGGGHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC--CCeEEeCCCCHHHHHHHHHHHh
Confidence 46799999999999999999999999999999999999999999999999997643 6789999999999999999999
Q ss_pred cCCC
Q psy16401 91 EDLL 94 (94)
Q Consensus 91 tg~l 94 (94)
||++
T Consensus 82 tg~~ 85 (135)
T 2yy9_A 82 TGHL 85 (135)
T ss_dssp HSCC
T ss_pred CCCC
Confidence 9975
No 12
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.91 E-value=5.7e-25 Score=129.22 Aligned_cols=80 Identities=19% Similarity=0.306 Sum_probs=74.2
Q ss_pred CCcHHHHHHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCCCCCCCCeEEcC--CCCHHHHHHhhcccc
Q psy16401 13 NNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSP--DLRFYETDGILPFAR 90 (94)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~~~~~~~~i~l~--~~~~~~~~~lL~f~Y 90 (94)
++|+..+++.++++++++.+|||++.++|+.|+|||.||+++|+||+++|.+. ....|.++ +++++.|+.+|+|+|
T Consensus 3 ~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~--~~~~i~l~~~~~~~~~f~~ll~~~Y 80 (116)
T 2vpk_A 3 SHHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST--SENNVFLDQSQVKADGFQKLLEFIY 80 (116)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC--CCSCEECCTTTCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC--CCCeEEeecCCCCHHHHHHHHHHHc
Confidence 57899999999999999999999999999999999999999999999999765 46677777 999999999999999
Q ss_pred cCCC
Q psy16401 91 EDLL 94 (94)
Q Consensus 91 tg~l 94 (94)
||++
T Consensus 81 t~~~ 84 (116)
T 2vpk_A 81 TGTL 84 (116)
T ss_dssp HSCC
T ss_pred CCCc
Confidence 9975
No 13
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.91 E-value=1.3e-25 Score=132.76 Aligned_cols=84 Identities=20% Similarity=0.305 Sum_probs=76.1
Q ss_pred eEEeeCCcHHHHHHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCCCCCCCCeEEcCCCCHHHHHHhhc
Q psy16401 8 FCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSPDLRFYETDGILP 87 (94)
Q Consensus 8 ~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~~~~~~~~i~l~~~~~~~~~~lL~ 87 (94)
..++++.|+..+++.++++++++.+|||++.++|+.|+|||.||+++|+||+++|.+ ....|.+++++++.|+.+|+
T Consensus 3 ~~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~---~~~~i~l~~~~~~~f~~ll~ 79 (119)
T 2q81_A 3 LGSDFPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVD---QKDVVHLDISNAAGLGQVLE 79 (119)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHH---CCSGGGGGGCCHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcC---CCCEEEeCCCCHHHHHHHHH
Confidence 345668999999999999999999999999999999999999999999999999964 34578889999999999999
Q ss_pred ccccCCC
Q psy16401 88 FAREDLL 94 (94)
Q Consensus 88 f~Ytg~l 94 (94)
|+|||++
T Consensus 80 ~~Ytg~~ 86 (119)
T 2q81_A 80 FMYTAKL 86 (119)
T ss_dssp HHHHSCC
T ss_pred HHcCCCC
Confidence 9999975
No 14
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.90 E-value=5.7e-24 Score=139.29 Aligned_cols=90 Identities=18% Similarity=0.245 Sum_probs=73.1
Q ss_pred CcceEEeeCCcHHHHHHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCCC----CCCCCeEEcCCCCHH
Q psy16401 5 DQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPIP----KRGMPETFSPDLRFY 80 (94)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~~----~~~~~~i~l~~~~~~ 80 (94)
+....+.++.|+..+++.++++++++.+|||++.++|+.|+|||.||+++|+||++||.+. +.....|.++++++.
T Consensus 4 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~ 83 (256)
T 3hve_A 4 AEGSAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVM 83 (256)
T ss_dssp ------CCTTTHHHHHHHHHTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHH
T ss_pred CCCCccCChHHHHHHHHHHHHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHH
Confidence 3446678899999999999999999999999999999999999999999999999999652 456789999999999
Q ss_pred HHHHhhcccccCCC
Q psy16401 81 ETDGILPFAREDLL 94 (94)
Q Consensus 81 ~~~~lL~f~Ytg~l 94 (94)
+|+.+|+|+|||++
T Consensus 84 ~f~~ll~~~Yt~~~ 97 (256)
T 3hve_A 84 VMREILDYIFSGQI 97 (256)
T ss_dssp HHHHHHHHHHHSCC
T ss_pred HHHHHHhhccCCCC
Confidence 99999999999975
No 15
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.88 E-value=2.1e-23 Score=138.10 Aligned_cols=90 Identities=13% Similarity=0.138 Sum_probs=77.9
Q ss_pred CcceEEeeCCcHHHHHHHHHHHHhCCCcccEEEEeC---CeEEEhhHHHhhccCHHHHhhCCC--CCCCCCeEEcC----
Q psy16401 5 DQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAE---GKTIQAHKVLLSACSPYFAVSLPI--PKRGMPETFSP---- 75 (94)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~~~~~---~~~~~~Hk~vL~a~S~~f~~~f~~--~~~~~~~i~l~---- 75 (94)
.+...+.++.|+..+++.++++++++.+|||+|.++ |+.|+|||.||+++|+||++||.+ .++....|.++
T Consensus 5 ~~~~~~~~~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~ 84 (279)
T 3i3n_A 5 MEAEDFECSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSS 84 (279)
T ss_dssp CCEEEEECTTHHHHHHHHHHHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSS
T ss_pred ccccCcCCHhHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccc
Confidence 356778899999999999999999999999999998 899999999999999999999965 46677899998
Q ss_pred --CCCHHHHHHhhcccccCCC
Q psy16401 76 --DLRFYETDGILPFAREDLL 94 (94)
Q Consensus 76 --~~~~~~~~~lL~f~Ytg~l 94 (94)
++++.+|+.+|+|+|||++
T Consensus 85 ~~~v~~~~f~~ll~~~Ytg~~ 105 (279)
T 3i3n_A 85 EPGPEPDTVEAVIEYMYTGRI 105 (279)
T ss_dssp TTCSCHHHHHHHHHHHHHSEE
T ss_pred cCCCCHHHHHHHHHhhCcCCc
Confidence 9999999999999999964
No 16
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.87 E-value=1.3e-22 Score=120.11 Aligned_cols=79 Identities=13% Similarity=0.124 Sum_probs=69.6
Q ss_pred ceEEeeCCcHHHHHHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCCCCCCCCeEEcCCCCHHHHHHhh
Q psy16401 7 HFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSPDLRFYETDGIL 86 (94)
Q Consensus 7 ~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~~~~~~~~i~l~~~~~~~~~~lL 86 (94)
+.....+.+...+++.++ +.++.+|||++.++|+.|+|||.|||++|+||++ ....|.+++++++.|+.+|
T Consensus 7 p~~~~~~~~~~~~l~~l~--r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~-------~~~~i~l~~v~~~~f~~ll 77 (119)
T 3m5b_A 7 PIRLPSPYGSDRLVQLAA--RLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR-------RGQWALGEGISPSTFAQLL 77 (119)
T ss_dssp CEEECCTTTTCHHHHHHH--HHTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC-------CEEEECCSSCCHHHHHHHH
T ss_pred CCCCCCCcchHHHHHHHH--HhcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc-------CCCEEEeCCCCHHHHHHHH
Confidence 344556778888998887 6789999999999999999999999999999984 3568999999999999999
Q ss_pred cccccCCC
Q psy16401 87 PFAREDLL 94 (94)
Q Consensus 87 ~f~Ytg~l 94 (94)
+|+|||++
T Consensus 78 ~fiYtg~~ 85 (119)
T 3m5b_A 78 NFVYGESV 85 (119)
T ss_dssp HHHTTCCE
T ss_pred HHHcCCCc
Confidence 99999974
No 17
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.87 E-value=8.2e-23 Score=126.55 Aligned_cols=83 Identities=22% Similarity=0.258 Sum_probs=75.8
Q ss_pred eCCcHHHHHHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCC--CCCCCCeEEcCCCCHHHHHHhhccc
Q psy16401 12 WNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPI--PKRGMPETFSPDLRFYETDGILPFA 89 (94)
Q Consensus 12 ~~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~--~~~~~~~i~l~~~~~~~~~~lL~f~ 89 (94)
++.++..+.+.++++++++.+|||+|.++|+.|+|||.||+++|+||+++|.+ .+.....|.+++++++.|+.+|+|+
T Consensus 14 ~~~p~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~ 93 (172)
T 3htm_A 14 VKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFI 93 (172)
T ss_dssp SCCCCCCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHHH
Confidence 45566789999999999999999999999999999999999999999999954 5666789999999999999999999
Q ss_pred ccCCC
Q psy16401 90 REDLL 94 (94)
Q Consensus 90 Ytg~l 94 (94)
|||++
T Consensus 94 Yt~~~ 98 (172)
T 3htm_A 94 YTGKA 98 (172)
T ss_dssp HHSCC
T ss_pred hCCCC
Confidence 99974
No 18
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.85 E-value=3.2e-22 Score=116.06 Aligned_cols=68 Identities=21% Similarity=0.238 Sum_probs=60.1
Q ss_pred HHhCCCcccEEEEeCC----eEEEhhHHHhhccCHHHHhhCCC--CCCCCCeEEcCCCCHHHHHHhhcccccCCC
Q psy16401 26 LLNSSTLVDCALSAEG----KTIQAHKVLLSACSPYFAVSLPI--PKRGMPETFSPDLRFYETDGILPFAREDLL 94 (94)
Q Consensus 26 ~~~~~~~~Dv~~~~~~----~~~~~Hk~vL~a~S~~f~~~f~~--~~~~~~~i~l~~~~~~~~~~lL~f~Ytg~l 94 (94)
+++++.+|||++.+++ +.|+|||.||+++|+||+++|.+ .+.. ..|.+++++++.|+.+|+|+|||++
T Consensus 2 l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l~~~~~~~f~~~l~~iYt~~~ 75 (109)
T 2vkp_A 2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIPDVEPAAFLILLKYMYSDEI 75 (109)
T ss_dssp CTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEETTSCHHHHHHHHHHHHHCCC
T ss_pred cccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEeCCCCHHHHHHHHHHHcCCCc
Confidence 5788999999999988 89999999999999999999965 3444 8999999999999999999999975
No 19
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.85 E-value=7.5e-23 Score=123.69 Aligned_cols=81 Identities=22% Similarity=0.272 Sum_probs=73.1
Q ss_pred CcHHHHHHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCC--CCCCCCeEEcCCCCHHHHHHhhccccc
Q psy16401 14 NHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPI--PKRGMPETFSPDLRFYETDGILPFARE 91 (94)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~--~~~~~~~i~l~~~~~~~~~~lL~f~Yt 91 (94)
-.+..+.+.++++++++.+|||++.++|+.|+|||.||+++|+||+++|.+ .+.....|.+++++++.|+.+|+|+||
T Consensus 7 ~p~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~ 86 (145)
T 4eoz_A 7 VPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYT 86 (145)
T ss_dssp CCCCCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhcc
Confidence 345678899999999999999999999999999999999999999999965 344557999999999999999999999
Q ss_pred CCC
Q psy16401 92 DLL 94 (94)
Q Consensus 92 g~l 94 (94)
|++
T Consensus 87 ~~~ 89 (145)
T 4eoz_A 87 GKA 89 (145)
T ss_dssp SCC
T ss_pred Ccc
Confidence 974
No 20
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.82 E-value=3e-20 Score=124.39 Aligned_cols=80 Identities=23% Similarity=0.284 Sum_probs=71.6
Q ss_pred cHHHHHHHHHHHHhCCCcccEEEEeCCeEEEhhHHHhhccCHHHHhhCCC--CCCCCCeEEcCCCCHHHHHHhhcccccC
Q psy16401 15 HQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPI--PKRGMPETFSPDLRFYETDGILPFARED 92 (94)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~--~~~~~~~i~l~~~~~~~~~~lL~f~Ytg 92 (94)
.+..+.+.+.++++++.++||+|.++|+.|+|||.|||++|+||+++|.+ .+....+|.+++++++.|+.+|+|+|||
T Consensus 157 p~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~ 236 (312)
T 3hqi_A 157 PECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTG 236 (312)
T ss_dssp CCCCHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHS
T ss_pred CCchHHHHHHHHHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCC
Confidence 34568899999999999999999999999999999999999999999965 5677789999999999999999999999
Q ss_pred CC
Q psy16401 93 LL 94 (94)
Q Consensus 93 ~l 94 (94)
++
T Consensus 237 ~~ 238 (312)
T 3hqi_A 237 KA 238 (312)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 21
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.12 E-value=7.5e-11 Score=67.12 Aligned_cols=55 Identities=9% Similarity=0.018 Sum_probs=45.0
Q ss_pred EEEEe-CCeEEEhhHHHhhccCHHHHhhCCC----CCCCCCeEEcCCCCHHHHHHhhcccc
Q psy16401 35 CALSA-EGKTIQAHKVLLSACSPYFAVSLPI----PKRGMPETFSPDLRFYETDGILPFAR 90 (94)
Q Consensus 35 v~~~~-~~~~~~~Hk~vL~a~S~~f~~~f~~----~~~~~~~i~l~~~~~~~~~~lL~f~Y 90 (94)
|+++. +|..|.+||.+ |++|++|++||.. .+.....|.++++++..++.+++|+|
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~ 63 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 63 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHH
Confidence 44554 78899999999 9999999999954 34457899999999999999999999
No 22
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=99.04 E-value=2.5e-10 Score=70.16 Aligned_cols=58 Identities=9% Similarity=0.074 Sum_probs=47.4
Q ss_pred EEEEe-CCeEEEhhHHHhhccCHHHHhhCCC---C-CCCCCeEEcCCCCHHHHHHhhcccccCC
Q psy16401 35 CALSA-EGKTIQAHKVLLSACSPYFAVSLPI---P-KRGMPETFSPDLRFYETDGILPFAREDL 93 (94)
Q Consensus 35 v~~~~-~~~~~~~Hk~vL~a~S~~f~~~f~~---~-~~~~~~i~l~~~~~~~~~~lL~f~Ytg~ 93 (94)
|+|.. +|+.|.+|+.+ |++|+||++||.. . +.....|.+++++...++.+++|+|++.
T Consensus 3 v~L~ssDg~~f~v~~~v-A~~S~~i~~m~~~~~~~~e~~~~~Ipl~~V~~~iL~kViey~~~h~ 65 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHK 65 (159)
T ss_dssp EEEECTTSCEEEEEHHH-HHTCHHHHHHTTSSCSS------CEECTTSCHHHHHHHHHHHHHTT
T ss_pred EEEEcCCCCEEEeCHHH-HHHhHHHHHHHHhcCCcccccCCCcCCCCccHHHHHHHHHHHHHcC
Confidence 66764 78999999999 8999999999964 2 4555789999999999999999999875
No 23
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=98.51 E-value=5.1e-08 Score=58.79 Aligned_cols=55 Identities=11% Similarity=0.116 Sum_probs=47.2
Q ss_pred EEEEe-CCeEEEhhHHHhhccCHHHHhhCCCCCCCCCeEEcCCCCHHHHHHhhcccccC
Q psy16401 35 CALSA-EGKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSPDLRFYETDGILPFARED 92 (94)
Q Consensus 35 v~~~~-~~~~~~~Hk~vL~a~S~~f~~~f~~~~~~~~~i~l~~~~~~~~~~lL~f~Ytg 92 (94)
|++.. +|+.|.+|+.+ |.+|.+++.|+.... ...|.+++++...++.+++|+|..
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~--~~~Ipl~~V~~~iL~kVieyc~~h 59 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLG--MDPVPLPNVNAAILKKVIQWCTHH 59 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTC--CSSEECTTCCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcC--CCceecCCcCHHHHHHHHHHHHHh
Confidence 56666 78999999998 889999999995422 568999999999999999999864
No 24
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=98.39 E-value=8.5e-07 Score=50.44 Aligned_cols=56 Identities=7% Similarity=0.023 Sum_probs=47.2
Q ss_pred EEEEe-CCeEEEhhHHHhhccCHHHHhhCCC-CCCCCCeEEcCCCCHHHHHHhhccccc
Q psy16401 35 CALSA-EGKTIQAHKVLLSACSPYFAVSLPI-PKRGMPETFSPDLRFYETDGILPFARE 91 (94)
Q Consensus 35 v~~~~-~~~~~~~Hk~vL~a~S~~f~~~f~~-~~~~~~~i~l~~~~~~~~~~lL~f~Yt 91 (94)
+++.. +|..|.+++.+ |..|.+++.|+.. .+.....|.+++++...++.+++|+|.
T Consensus 6 v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~e~~~~~Iplp~V~~~iL~kVieyc~~ 63 (99)
T 1hv2_A 6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNY 63 (99)
T ss_dssp EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSSTTTCTTEEEETTSCHHHHHHHHHHHHH
T ss_pred EEEEecCCCEEEECHHH-HHHhHHHHHHHhcccccCCCceecCCcCHHHHHHHHHHHHH
Confidence 56655 88999999997 8899999999943 234457899999999999999999975
No 25
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=98.37 E-value=4e-07 Score=51.51 Aligned_cols=56 Identities=9% Similarity=0.002 Sum_probs=44.7
Q ss_pred EEEEe-CCeEEEhhHHHhhccCHHHHhhCCC----CCCCCCeEEcCCCCHHHHHHhhccccc
Q psy16401 35 CALSA-EGKTIQAHKVLLSACSPYFAVSLPI----PKRGMPETFSPDLRFYETDGILPFARE 91 (94)
Q Consensus 35 v~~~~-~~~~~~~Hk~vL~a~S~~f~~~f~~----~~~~~~~i~l~~~~~~~~~~lL~f~Yt 91 (94)
+++.. +|..|.+++.+ |..|.+++.|+.. .+.....|.+++++...++.+++|+|.
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~ 63 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTY 63 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHH
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHH
Confidence 45555 88999999997 8899999999943 244457899999999999999999975
No 26
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=98.36 E-value=5.3e-08 Score=59.85 Aligned_cols=57 Identities=9% Similarity=0.105 Sum_probs=27.9
Q ss_pred EEEEe-CCeEEEhhHHHhhccCHHHHhhCCCCCCCCCeEEcCCCCHHHHHHhhcccccCC
Q psy16401 35 CALSA-EGKTIQAHKVLLSACSPYFAVSLPIPKRGMPETFSPDLRFYETDGILPFAREDL 93 (94)
Q Consensus 35 v~~~~-~~~~~~~Hk~vL~a~S~~f~~~f~~~~~~~~~i~l~~~~~~~~~~lL~f~Ytg~ 93 (94)
|+|.. +|..|.+|+.+ |.+|++++.|+... .....|.+++++...++.+++|+|...
T Consensus 6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~-~~~~~Ipl~~V~~~iL~kVieyc~~h~ 63 (160)
T 2p1m_A 6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDD-CVDNGVPLPNVTSKILAKVIEYCKRHV 63 (160)
T ss_dssp --CCC---------CHH-HHTCTTTC-------------CCTTSCHHHHHHHHHC-----
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHcc-CCCCceeCCcCcHHHHHHHHHHHHHcc
Confidence 55654 78999999998 88999999999642 234589999999999999999999763
No 27
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=97.75 E-value=6.1e-05 Score=43.65 Aligned_cols=57 Identities=9% Similarity=-0.014 Sum_probs=44.4
Q ss_pred cEEEE-eCCeEEEhhHHHhhccCHHHHhhCCC----CCCCCCeEEcCCCCHHHHHHhhccccc
Q psy16401 34 DCALS-AEGKTIQAHKVLLSACSPYFAVSLPI----PKRGMPETFSPDLRFYETDGILPFARE 91 (94)
Q Consensus 34 Dv~~~-~~~~~~~~Hk~vL~a~S~~f~~~f~~----~~~~~~~i~l~~~~~~~~~~lL~f~Yt 91 (94)
-|++. .+|..|.+.+.+ |..|..++.|+.. .+.....|.|++++...++.+++|++.
T Consensus 18 ~v~L~SsDG~~F~V~~~~-A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~ 79 (112)
T 1vcb_B 18 YVKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTY 79 (112)
T ss_dssp EEEEECTTSCEEEEEHHH-HHTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCEEEECHHH-HHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHH
Confidence 35665 488899999995 6789999999953 233346899999999999999999964
No 28
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=97.52 E-value=0.0002 Score=41.00 Aligned_cols=59 Identities=14% Similarity=0.071 Sum_probs=46.5
Q ss_pred EEEEeCCeEEEhhHHHhhccC-HHHHhhCCCC------CCCCCeEEcCCCCHHHHHHhhcccccCCC
Q psy16401 35 CALSAEGKTIQAHKVLLSACS-PYFAVSLPIP------KRGMPETFSPDLRFYETDGILPFAREDLL 94 (94)
Q Consensus 35 v~~~~~~~~~~~Hk~vL~a~S-~~f~~~f~~~------~~~~~~i~l~~~~~~~~~~lL~f~Ytg~l 94 (94)
|.|.|||+.|...+..|+... .+|..+|... .....++-+ +-++..|+.||+|+.+|++
T Consensus 8 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi-DRdp~~F~~IL~~lr~g~l 73 (107)
T 3drz_A 8 VRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKL 73 (107)
T ss_dssp EEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE-CSCHHHHHHHHHHHHHSCC
T ss_pred EEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe-cCChHHHHHHHHHhCCCee
Confidence 678999999999999998875 5677887542 123345555 6899999999999999975
No 29
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=97.47 E-value=0.00013 Score=45.03 Aligned_cols=57 Identities=16% Similarity=0.151 Sum_probs=44.5
Q ss_pred cEEEEe-CCeEEEhhHHHhhccCHHHHhhCCCC-C-----CCCCeEEcCCCCHHHHHHhhccccc
Q psy16401 34 DCALSA-EGKTIQAHKVLLSACSPYFAVSLPIP-K-----RGMPETFSPDLRFYETDGILPFARE 91 (94)
Q Consensus 34 Dv~~~~-~~~~~~~Hk~vL~a~S~~f~~~f~~~-~-----~~~~~i~l~~~~~~~~~~lL~f~Yt 91 (94)
-|+|+. +|..|.+++.+ |..|..++.|+... . .....|.|++++...++.+++|++.
T Consensus 8 ~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~ 71 (169)
T 3v7d_A 8 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEH 71 (169)
T ss_dssp EEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHH
Confidence 456655 77899999998 77899999998431 1 2337899999999999999999964
No 30
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=95.28 E-value=0.019 Score=33.12 Aligned_cols=59 Identities=15% Similarity=0.047 Sum_probs=43.3
Q ss_pred EEEEeCCeEEEhhHHHhhccCH-HHHhhCCCC---CCCCCeEEcCCCCHHHHHHhhcccccCCC
Q psy16401 35 CALSAEGKTIQAHKVLLSACSP-YFAVSLPIP---KRGMPETFSPDLRFYETDGILPFAREDLL 94 (94)
Q Consensus 35 v~~~~~~~~~~~Hk~vL~a~S~-~f~~~f~~~---~~~~~~i~l~~~~~~~~~~lL~f~Ytg~l 94 (94)
|+|.|||+.|...+..|...-. .+..++... .....++-+ +=++..|+.||+|+-+|++
T Consensus 7 V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnylR~G~l 69 (115)
T 3kvt_A 7 VIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFF-DRHPGVFAQIINYYRSGKL 69 (115)
T ss_dssp EEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEE-CSCTTTHHHHHHHHHHSCB
T ss_pred EEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEE-ecChHHHHHHHHHhcCCCC
Confidence 6789999999999999987643 344555331 123455555 5789999999999999875
No 31
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=94.20 E-value=0.024 Score=35.94 Aligned_cols=59 Identities=14% Similarity=0.071 Sum_probs=44.3
Q ss_pred EEEEeCCeEEEhhHHHhhccC-HHHHhhCCCC------CCCCCeEEcCCCCHHHHHHhhcccccCCC
Q psy16401 35 CALSAEGKTIQAHKVLLSACS-PYFAVSLPIP------KRGMPETFSPDLRFYETDGILPFAREDLL 94 (94)
Q Consensus 35 v~~~~~~~~~~~Hk~vL~a~S-~~f~~~f~~~------~~~~~~i~l~~~~~~~~~~lL~f~Ytg~l 94 (94)
|.|.|||+.|...+..|...- .+|..+|... .....++-+ |-++..|+.||+|+-+|++
T Consensus 14 V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFI-DRDP~~F~~ILnyLRtG~L 79 (202)
T 3drx_A 14 VRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKL 79 (202)
T ss_dssp EEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEE-CSCSTTHHHHHHHHHHSCC
T ss_pred EEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEe-cCChHHHHHHHHHhcCCcc
Confidence 677999999999999998754 4667777432 122345555 5789999999999999875
No 32
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=93.79 E-value=0.083 Score=30.83 Aligned_cols=57 Identities=21% Similarity=0.146 Sum_probs=40.7
Q ss_pred cEEEEeCCeEEEhhHHHhhccCHHHHhhCCC------CCCCCCeEEcCCCCHHHHHHhhcccccCCC
Q psy16401 34 DCALSAEGKTIQAHKVLLSACSPYFAVSLPI------PKRGMPETFSPDLRFYETDGILPFAREDLL 94 (94)
Q Consensus 34 Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~------~~~~~~~i~l~~~~~~~~~~lL~f~Ytg~l 94 (94)
=|.|.|||+.|..-+..|...-. .+++. ......++-+ +=++..|+.||+|+-+|++
T Consensus 14 ~V~LNVGG~~F~t~~~TL~~~p~---S~L~~~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnflR~G~l 76 (124)
T 1s1g_A 14 LIVLNVSGRRFQTWRTTLERYPD---TLLGSTEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKL 76 (124)
T ss_dssp EEEEEETTEEEEEEHHHHTTSTT---SSTTSSGGGGTBCSSSCSEEE-CSCHHHHHHHHHHHHHSCB
T ss_pred EEEEEeCCEEEEEeHHHHhcCCC---ceecccCCcccccCCCCcEEE-cCChHHHHHHHHHHhcCCC
Confidence 36789999999999999976432 23322 1123345555 5699999999999999875
No 33
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=92.06 E-value=0.14 Score=30.45 Aligned_cols=57 Identities=21% Similarity=0.169 Sum_probs=41.0
Q ss_pred cEEEEeCCeEEEhhHHHhhccCHHHHhhCCCC------CCCCCeEEcCCCCHHHHHHhhcccccCCC
Q psy16401 34 DCALSAEGKTIQAHKVLLSACSPYFAVSLPIP------KRGMPETFSPDLRFYETDGILPFAREDLL 94 (94)
Q Consensus 34 Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~~------~~~~~~i~l~~~~~~~~~~lL~f~Ytg~l 94 (94)
-|+|.|||+.|...+..|...-. .+++.. .....++-+ |=++..|+.||+|+-+|++
T Consensus 36 ~V~LNVGG~~F~T~~~TL~~~P~---S~L~~~~~~~~~~~~~g~yFi-DRdp~~F~~ILnflR~G~l 98 (140)
T 2nz0_B 36 LIVLNVSGRRFQTWRTTLERYPD---TLLGSTEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKL 98 (140)
T ss_dssp EEEEEETTEEEEEEHHHHHTCTT---STTTSGGGGGSEETTTTEEEE-CSCHHHHHHHHHHHHHSSB
T ss_pred EEEEEECCEEEEeeHHHHhcCCC---eeecccCCcccccCCCCeEEE-eCCcHHHHHHHHHHhcCCc
Confidence 47789999999999999976432 233221 123445555 5699999999999999875
No 34
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=90.49 E-value=0.21 Score=27.95 Aligned_cols=56 Identities=20% Similarity=0.107 Sum_probs=39.8
Q ss_pred EEEEeCCeEEEhhHHHhhccCHHHHhhCCC-------CCCCCCeEEcCCCCHHHHHHhhccccc-CCC
Q psy16401 35 CALSAEGKTIQAHKVLLSACSPYFAVSLPI-------PKRGMPETFSPDLRFYETDGILPFARE-DLL 94 (94)
Q Consensus 35 v~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~-------~~~~~~~i~l~~~~~~~~~~lL~f~Yt-g~l 94 (94)
|++.|||+.|...+..|+..- ..+++. ......++-+ +=++..|+.||+|+-+ |++
T Consensus 3 v~LNVGG~~f~t~~~TL~~~p---~s~L~~~~~~~~~~~~~~~eyFi-DRdp~~F~~ILnflR~~G~l 66 (100)
T 1t1d_A 3 VVINVSGLRFETQLKTLNQFP---DTLLGNPQKRNRYYDPLRNEYFF-DRNRPSFDAILYFYQSGGRL 66 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTST---TSTTTCHHHHGGGEETTTTEEEE-CSCSTTHHHHHHHHHTTSCC
T ss_pred EEEEECCEEEEeeHHHHhcCC---CccccchhccccccCCCceeEEE-cCChHHHHHHHHHHhcCCcc
Confidence 678999999999999986542 223322 1123456665 5689999999999998 764
No 35
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=90.17 E-value=0.075 Score=30.04 Aligned_cols=56 Identities=21% Similarity=0.138 Sum_probs=39.8
Q ss_pred EEEEeCCeEEEhhHHHhhccCHHHHhhCCCC------CCCCCeEEcCCCCHHHHHHhhcccccCCC
Q psy16401 35 CALSAEGKTIQAHKVLLSACSPYFAVSLPIP------KRGMPETFSPDLRFYETDGILPFAREDLL 94 (94)
Q Consensus 35 v~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~~------~~~~~~i~l~~~~~~~~~~lL~f~Ytg~l 94 (94)
|++.|||+.|...+..|...-. .+++.. .....++-+ +=++..|+.||+|+-+|++
T Consensus 2 V~LNVGG~~f~t~~~TL~~~p~---s~L~~~~~~~~~~~~~~~~Fi-DRdp~~F~~ILnflR~g~l 63 (105)
T 1nn7_A 2 IVLNVSGTRFQTWQDTLERYPD---TLLGSSERDFFYHPETQQYFF-DRDPDIFRHILNFYRTGKL 63 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSCS---SSTTSGGGGGGEEGGGTEEEE-CSCTTTHHHHHHHHHHSCB
T ss_pred EEEEECCEEEEEeHHHHhcCCC---ccccccCCcccccCCCCcEEE-eCCcHHHHHHHHHHhcCCC
Confidence 6789999999999999976432 233221 112345555 5589999999999999875
No 36
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=67.83 E-value=3.7 Score=29.19 Aligned_cols=57 Identities=18% Similarity=0.081 Sum_probs=40.7
Q ss_pred cEEEEeCCeEEEhhHHHhhccCHHHHhhCCC-------CCCCCCeEEcCCCCHHHHHHhhccccc-CCC
Q psy16401 34 DCALSAEGKTIQAHKVLLSACSPYFAVSLPI-------PKRGMPETFSPDLRFYETDGILPFARE-DLL 94 (94)
Q Consensus 34 Dv~~~~~~~~~~~Hk~vL~a~S~~f~~~f~~-------~~~~~~~i~l~~~~~~~~~~lL~f~Yt-g~l 94 (94)
-|.+.|||+.|...+..|...- ..+++. .....++.-+ |=++..|+.+|+|+.| |++
T Consensus 53 ~v~lNVgG~~f~t~~~tL~~~p---~s~l~~~~~~~~~~~~~~~~~f~-DR~~~~F~~IL~~~r~~g~l 117 (514)
T 2r9r_B 53 RVVINISGLRFETQLKTLAQFP---ETLLGDPKKRMRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRL 117 (514)
T ss_dssp EEEEEETTEEEEEEHHHHTTST---TSTTTCHHHHGGGEETTTTEEEE-CSCHHHHHHHHHHHHHTSCC
T ss_pred EEEEEeCCEEEEecHHHHhcCC---CCcccccccCCcccCCCCCCEEE-cCChHHHHHHHHHHhcCCcc
Confidence 3677899999999999987532 233322 1123455655 6799999999999999 875
No 37
>4h63_H Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; 3.40A {Schizosaccharomyces pombe}
Probab=46.51 E-value=6.5 Score=24.70 Aligned_cols=13 Identities=23% Similarity=0.319 Sum_probs=11.2
Q ss_pred HHHHhhcccccCC
Q psy16401 81 ETDGILPFAREDL 93 (94)
Q Consensus 81 ~~~~lL~f~Ytg~ 93 (94)
....+|+|+|+|+
T Consensus 187 ~~~~vl~f~~~G~ 199 (200)
T 4h63_H 187 MLTDILSFMKSGK 199 (200)
T ss_dssp HHHHHHHHHHTCC
T ss_pred CHHHHHHHHhcCC
Confidence 4678999999996
No 38
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=39.49 E-value=54 Score=19.39 Aligned_cols=30 Identities=13% Similarity=0.201 Sum_probs=24.5
Q ss_pred eeCCcHHHHHHHHHHHHhCCCcccEEEEeCCe
Q psy16401 11 RWNNHQNTLISVFHNLLNSSTLVDCALSAEGK 42 (94)
Q Consensus 11 ~~~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~ 42 (94)
..++....+.+.+++....+ +|++|..||.
T Consensus 50 iv~Dd~~~I~~~l~~a~~~~--~DlVittGG~ 79 (167)
T 2g2c_A 50 VVPEGYDTVVEAIATALKQG--ARFIITAGGT 79 (167)
T ss_dssp EECSSHHHHHHHHHHHHHTT--CSEEEEESCC
T ss_pred EeCCCHHHHHHHHHHHHhCC--CCEEEECCCC
Confidence 45788899999999887654 7999999874
No 39
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=36.98 E-value=37 Score=20.49 Aligned_cols=25 Identities=12% Similarity=0.203 Sum_probs=20.1
Q ss_pred cHHHHHHHHHHHHhCCCcccEEEEeCC
Q psy16401 15 HQNTLISVFHNLLNSSTLVDCALSAEG 41 (94)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~Dv~~~~~~ 41 (94)
-+..+.+.+.+.+.++ +|++|++||
T Consensus 79 sS~~fA~~l~~~~~~G--~~i~FvIGG 103 (163)
T 1o6d_A 79 SSEEFADFLKDLEMKG--KDITILIGG 103 (163)
T ss_dssp CHHHHHHHHHHHHHHT--CCEEEEECC
T ss_pred CHHHHHHHHHHHHhcC--CeEEEEEEC
Confidence 3566778888888888 699999987
No 40
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3
Probab=34.90 E-value=38 Score=20.25 Aligned_cols=25 Identities=16% Similarity=0.141 Sum_probs=19.8
Q ss_pred cHHHHHHHHHHHHhCCCcccEEEEeCC
Q psy16401 15 HQNTLISVFHNLLNSSTLVDCALSAEG 41 (94)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~Dv~~~~~~ 41 (94)
-+..+.+.+.+.+.++ +|++|++||
T Consensus 80 sS~~fA~~l~~~~~~g--~~i~FvIGG 104 (155)
T 1ns5_A 80 DTPQLAAELERWKLDG--RDVSLLIGG 104 (155)
T ss_dssp CHHHHHHHHHHHHHHC--SCEEEEECB
T ss_pred CHHHHHHHHHHHHhcC--CeEEEEEEC
Confidence 3566777888888887 699999987
No 41
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=28.58 E-value=72 Score=19.24 Aligned_cols=27 Identities=19% Similarity=0.183 Sum_probs=22.6
Q ss_pred eCCcHHHHHHHHHHHHhCCCcccEEEEeCC
Q psy16401 12 WNNHQNTLISVFHNLLNSSTLVDCALSAEG 41 (94)
Q Consensus 12 ~~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~ 41 (94)
.++....+.+.+++.... +|++|..||
T Consensus 45 v~Dd~~~I~~~l~~a~~~---~DlVittGG 71 (172)
T 3kbq_A 45 VMDDLDEIGWAFRVALEV---SDLVVSSGG 71 (172)
T ss_dssp ECSCHHHHHHHHHHHHHH---CSEEEEESC
T ss_pred eCCCHHHHHHHHHHHHhc---CCEEEEcCC
Confidence 578888999999887664 799999987
No 42
>1k8k_G P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.118.13.1 PDB: 1tyq_G* 1u2v_G* 2p9i_G* 2p9k_G* 2p9l_G 2p9n_G* 2p9p_G* 2p9s_G* 2p9u_G* 3rse_G 3dxm_G* 3dxk_G
Probab=27.08 E-value=10 Score=22.81 Aligned_cols=18 Identities=11% Similarity=0.143 Sum_probs=15.8
Q ss_pred CCCCHHHHHHhhcccccC
Q psy16401 75 PDLRFYETDGILPFARED 92 (94)
Q Consensus 75 ~~~~~~~~~~lL~f~Ytg 92 (94)
..++.+....+++|+|.|
T Consensus 96 ~~L~~e~~D~LMKYiYkG 113 (151)
T 1k8k_G 96 QSLDKNGVDLLMKYIYKG 113 (151)
T ss_dssp HTSCHHHHHHHHHHHHHH
T ss_pred HHhChhhhhHHHHHHHHh
Confidence 478889999999999976
No 43
>2hzs_I RNA polymerase II mediator complex subunit 8; beta barrel, channel, helix, transcription; 2.70A {Saccharomyces cerevisiae}
Probab=23.02 E-value=18 Score=14.67 Aligned_cols=12 Identities=25% Similarity=0.360 Sum_probs=8.5
Q ss_pred HHHhhcccccCC
Q psy16401 82 TDGILPFAREDL 93 (94)
Q Consensus 82 ~~~lL~f~Ytg~ 93 (94)
+..+|+|-+||+
T Consensus 9 vddvlkftftge 20 (27)
T 2hzs_I 9 VDDVLKFTFTGE 20 (27)
T ss_dssp HHHHHHHHHHCC
T ss_pred hhheEEEEeccc
Confidence 356788888875
Done!