RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16401
(94 letters)
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional
repression, transcription; 1.30A {Homo sapiens} SCOP:
d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Length = 127
Score = 58.0 bits (141), Expect = 1e-12
Identities = 13/55 (23%), Positives = 25/55 (45%)
Query: 4 GDQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYF 58
G +++ H + ++ + L + L D + + +AHK +L ACS F
Sbjct: 1 GSADSQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLF 55
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics,
struct genomics consortium, SGC, structural protein;
2.40A {Homo sapiens}
Length = 144
Score = 58.5 bits (142), Expect = 1e-12
Identities = 15/83 (18%), Positives = 25/83 (30%), Gaps = 11/83 (13%)
Query: 1 MESGDQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAV 60
Q + H L+ + S D L +G+ I K +L+A SPY
Sbjct: 16 ENLYFQSMAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYI-- 73
Query: 61 SLPIPKRGMPETFSPDLRFYETD 83
R + + +
Sbjct: 74 ------RTK---LNYNPPKDDGS 87
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A
{Homo sapiens} PDB: 3ohv_A
Length = 125
Score = 55.7 bits (135), Expect = 8e-12
Identities = 15/57 (26%), Positives = 24/57 (42%)
Query: 2 ESGDQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYF 58
G + H ++ ++ L D L E K +AH+ +L+ACS YF
Sbjct: 2 PLGSPMYVYESTVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYF 58
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain,
POK, proto oncogene, transcription F transcription;
2.00A {Homo sapiens} PDB: 2nn2_A
Length = 120
Score = 55.3 bits (134), Expect = 1e-11
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 9 CLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYF 58
+ + +H + ++S + L D + EG+ H+ +L+ACS YF
Sbjct: 2 GIPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYF 51
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC
domain,transcription factor, protein-PROT interaction;
2.44A {Homo sapiens}
Length = 124
Score = 54.5 bits (132), Expect = 3e-11
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 11 RWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYF 58
+ H ++ ++ L D + EG+ +AH+ +L+ACS YF
Sbjct: 8 ESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYF 55
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond,
activator, DNA-binding, nucleus, phosphorylation,
repressor; 2.50A {Mus musculus}
Length = 138
Score = 54.6 bits (132), Expect = 3e-11
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 2 ESGDQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYF 58
ES + + H ++ ++ L D + EG+ +AH+ +L+ACS YF
Sbjct: 8 ESAVFAYE--SSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYF 62
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation,
kelch repeat, neurodegeneration, phosphoprotein,
polymorphism, UBL conjugation; 2.80A {Homo sapiens}
PDB: 3hve_B
Length = 256
Score = 56.1 bits (136), Expect = 3e-11
Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 11/69 (15%)
Query: 13 NNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPIPKRGMPET 72
H L+ + S D L +G+ I K +L+A SPY R
Sbjct: 12 PQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYI--------RTK--- 60
Query: 73 FSPDLRFYE 81
+ + +
Sbjct: 61 LNYNPPKDD 69
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain,
phosphoprotein, repressor, transcri transcription
regulation; 2.10A {Homo sapiens}
Length = 129
Score = 53.4 bits (129), Expect = 7e-11
Identities = 12/56 (21%), Positives = 24/56 (42%)
Query: 3 SGDQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYF 58
Q + N N+++ + D ++ +G +AH+ +L+A S YF
Sbjct: 4 GSAQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYF 59
>2vpk_A Myoneurin; transcription regulation, transcription,
metal-binding, alternative splicing, zinc, nucleus, BTB
domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Length = 116
Score = 53.4 bits (129), Expect = 7e-11
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 13 NNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYF 58
++H L+ + + L DC + +AH+ +L++ S YF
Sbjct: 3 SHHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYF 48
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote;
protein-protein interaction domain, transcriptional
represso finger protein; 1.90A {Homo sapiens} SCOP:
d.42.1.1 PDB: 1cs3_A
Length = 121
Score = 53.0 bits (128), Expect = 8e-11
Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 11/82 (13%)
Query: 13 NNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSLPIPKRGMPET 72
+H L+ + + + TL D + + + AH+ +L+ S F +
Sbjct: 9 PSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMF--------EIL--- 57
Query: 73 FSPDLRFYETDGILPFAREDLL 94
F + + Y D + P + +L
Sbjct: 58 FHRNSQHYTLDFLSPKTFQQIL 79
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein
binding; 2.40A {Homo sapiens}
Length = 145
Score = 52.5 bits (127), Expect = 2e-10
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 23 FHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFA 59
L +S DC L G+ QAHK +L+A SP F+
Sbjct: 16 LGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFS 52
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus,
UBL conjugation pathway, protein binding; 2.50A {Homo
sapiens}
Length = 172
Score = 53.0 bits (128), Expect = 2e-10
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 18 TLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFA 59
L L +S DC L G+ QAHK +L+A SP F+
Sbjct: 20 RLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFS 61
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3,
structural genomics, NPPSFA; 2.60A {Mus musculus}
Length = 135
Score = 52.3 bits (126), Expect = 2e-10
Identities = 10/46 (21%), Positives = 18/46 (39%)
Query: 13 NNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYF 58
+ H ++ + D L G +AH +L+ CS +F
Sbjct: 6 SGHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFF 51
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel
related zinc finger protein 3, HKR3, ZBTB48, Z finger,
oncogene; 1.74A {Homo sapiens}
Length = 119
Score = 51.5 bits (124), Expect = 3e-10
Identities = 10/47 (21%), Positives = 18/47 (38%)
Query: 12 WNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYF 58
+ H ++ + D L G +AH +L+ CS +F
Sbjct: 4 FVQHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFF 50
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain
containing 33, kaiso transcriptio ZNF-kaiso,
ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB:
3m4t_A 3m8v_A
Length = 116
Score = 51.1 bits (123), Expect = 4e-10
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 12/94 (12%)
Query: 1 MESGDQHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAV 60
MES + + +L++ + D + E + +AHK +LSA S YF
Sbjct: 1 MES-RKLISATDIQYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYF-- 57
Query: 61 SLPIPKRGMPETFSPDLRFYETDGILPFAREDLL 94
+ FS + E I ++L
Sbjct: 58 ------HQL---FSVAGQVVELSFIRAEIFAEIL 82
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A
{Homo sapiens} PDB: 3m52_A
Length = 119
Score = 50.7 bits (122), Expect = 6e-10
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 14 NHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYF 58
H ++ + L DC +G +AHK +L+ACS YF
Sbjct: 9 QHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYF 53
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC,
structural genomics consortium, kelch repeat, secreted,
protein binding; 2.60A {Homo sapiens}
Length = 279
Score = 52.3 bits (126), Expect = 1e-09
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 11 RWNNHQNTLISVFHNLLNSSTLVD---CALSAEGKTIQAHKVLLSACSPYF 58
++H + L + D C A G+ +AH+ +L+A + YF
Sbjct: 11 ECSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYF 61
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo
sapiens}
Length = 109
Score = 47.9 bits (115), Expect = 7e-09
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 25 NLLNSSTLVDCAL----SAEGKTIQAHKVLLSACSPYFA 59
++ N+ + D +T+ AHK +L+ S F
Sbjct: 1 SMFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFY 39
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL
conjugation pathway, protein binding, ligase; 2.62A
{Homo sapiens} PDB: 3hu6_A
Length = 312
Score = 49.9 bits (119), Expect = 9e-09
Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 11/82 (13%)
Query: 15 HQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYFAVSL----------PI 64
+ L L +S DC L G+ QAHK +L+A SP F+ +
Sbjct: 157 PECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRV 216
Query: 65 PKRGM-PETFSPDLRFYETDGI 85
+ PE F + F T
Sbjct: 217 EINDVEPEVFKEMMCFIYTGKA 238
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain,
BTB/POZ domain, ZBTB32, zinc finger domain-containing
protein 32; 2.00A {Homo sapiens}
Length = 119
Score = 46.5 bits (111), Expect = 3e-08
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 32 LVDCALSAEGKTIQAHKVLLSACSPYF 58
L D ++ + AH ++L+ S
Sbjct: 30 LCDTLITVGSQEFPAHSLVLAGVSQQL 56
>1mbm_A NSP4 proteinase, chymotrypsin-like serine protease; serine
proteinase, chymotrypsin-like proteinase, collapsed O
HOLE, transferase; 2.00A {Equine arteritis virus} SCOP:
b.47.1.3
Length = 198
Score = 26.7 bits (58), Expect = 1.2
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 38 SAEGKTIQAHKVLLSACSPYFA-VSLPIPKRGMPETFSPDLRFYETD 83
+ GK + A V LS+ S +F IPK +P+ D+
Sbjct: 141 TPSGKLLGADTVTLSSLSKHFTGPLTSIPKD-IPDNIIADVDAVPRS 186
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.6 bits (55), Expect = 3.7
Identities = 22/130 (16%), Positives = 35/130 (26%), Gaps = 43/130 (33%)
Query: 8 FCLRWNNHQNTLISVFHNLLNSSTLV------------DCALSAEGKT---IQAHKVLLS 52
L W + + + V N L+ +LV L + K H+ ++
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
Query: 53 A-----------CSP-----YFAVSLP--IPKRGMPETFSP------DLRFYE----TDG 84
P YF + + PE + D RF E D
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS 511
Query: 85 ILPFAREDLL 94
A +L
Sbjct: 512 TAWNASGSIL 521
>2wau_A VAR2CSA, erythrocyte membrane protein 1 (pfemp1); chondroitin
sulphate A, membrane protein DBL, malaria; 3.00A
{Plasmodium falciparum}
Length = 302
Score = 25.2 bits (55), Expect = 3.8
Identities = 5/44 (11%), Positives = 12/44 (27%), Gaps = 6/44 (13%)
Query: 6 QHFCLRWNNHQNTLISVFHNLLNSSTLVDCALSA--EGKTIQAH 47
++ L+ + L SA E + ++
Sbjct: 41 KNLFLKIDESDICKYKRDPKLF----KDFIYSSAISEVERLKKV 80
>3gpv_A Transcriptional regulator, MERR family; protein structure
initiative II(PSI II), NYSGXRC, structural genomics;
1.90A {Bacillus thuringiensis serovarkonkukian}
Length = 148
Score = 24.6 bits (54), Expect = 4.2
Identities = 5/14 (35%), Positives = 10/14 (71%)
Query: 77 LRFYETDGILPFAR 90
+R+Y+ G+ PF +
Sbjct: 33 IRYYDKQGLFPFLQ 46
>3gp4_A Transcriptional regulator, MERR family; structural genomics,
DNA-BI transcription regulator, PSI-2; 1.85A {Listeria
monocytogenes str}
Length = 142
Score = 24.6 bits (54), Expect = 4.9
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 77 LRFYETDGILPFAR 90
+R+YE G++P
Sbjct: 19 IRYYERIGLIPPIH 32
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress,
MERR family, activator; HET: DNA; 2.80A {Escherichia
coli} PDB: 2zhh_A
Length = 154
Score = 24.3 bits (53), Expect = 6.6
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 77 LRFYETDGILPFAR 90
L FYE+ G++ R
Sbjct: 28 LHFYESKGLITSIR 41
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.424
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,381,096
Number of extensions: 62523
Number of successful extensions: 91
Number of sequences better than 10.0: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 26
Length of query: 94
Length of database: 6,701,793
Length adjustment: 61
Effective length of query: 33
Effective length of database: 4,998,612
Effective search space: 164954196
Effective search space used: 164954196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.3 bits)