RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16401
         (94 letters)



>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 122

 Score = 49.3 bits (117), Expect = 8e-10
 Identities = 12/49 (24%), Positives = 24/49 (48%)

Query: 10 LRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYF 58
          +++  H + ++   + L +   L D  +    +  +AHK +L ACS  F
Sbjct: 3  IQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLF 51


>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF)
          protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 121

 Score = 47.7 bits (113), Expect = 3e-09
 Identities = 11/49 (22%), Positives = 23/49 (46%)

Query: 10 LRWNNHQNTLISVFHNLLNSSTLVDCALSAEGKTIQAHKVLLSACSPYF 58
          L+  +H   L+   + +  + TL D  +  + +   AH+ +L+  S  F
Sbjct: 6  LQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMF 54


>d1lnsa1 a.40.2.1 (A:1-145) X-Prolyl dipeptidyl aminopeptidase PepX,
           N-terminal domain {Lactococcus lactis [TaxId: 1358]}
          Length = 145

 Score = 23.2 bits (50), Expect = 6.2
 Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 6/33 (18%)

Query: 14  NHQNTLISVFHNLLNSS-----TLVDCALSAEG 41
                +IS F+ LL +       LV+    +EG
Sbjct: 111 MTTENIISAFYYLLCTRRKTGMILVEH-WVSEG 142


>d1gska1 b.6.1.3 (A:2-182) Spore coat protein A, CotA {Bacillus
          subtilis [TaxId: 1423]}
          Length = 181

 Score = 23.2 bits (49), Expect = 6.3
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query: 58 FAVSLPIPKRGMPETFSPDLRFYE 81
          F  +LPIP    P   S +  +YE
Sbjct: 5  FVDALPIPDTLKPVQQSKEKTYYE 28


>d1qlma_ d.147.1.1 (A:) Methenyltetrahydromethanopterin
          cyclohydrolase {Archaeon Methanopyrus kandleri [TaxId:
          2320]}
          Length = 316

 Score = 22.7 bits (49), Expect = 9.6
 Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)

Query: 24 HNLLNSSTLVDCALSAEGKTIQAHKVLLSAC 54
            L N +T++DC + A G   +A  +    C
Sbjct: 27 QELENGTTVIDCGVEAAG-GFEAGLLFSEVC 56


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.136    0.424 

Gapped
Lambda     K      H
   0.267   0.0574    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 339,355
Number of extensions: 11999
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 6
Length of query: 94
Length of database: 2,407,596
Length adjustment: 57
Effective length of query: 37
Effective length of database: 1,624,986
Effective search space: 60124482
Effective search space used: 60124482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.2 bits)