BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16402
         (77 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2YKT|A Chain A, Crystal Structure Of The I-Bar Domain Of Irsp53 (Baiap2)
          In Complex With An Ehec Derived Tir Peptide
          Length = 253

 Score = 27.3 bits (59), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 44 TEQMYKGLVEHCKKVLKGFLGILRVYKGCLAG 75
          TE +YK ++E     L+ F+ + + Y+  LAG
Sbjct: 16 TENVYKTIMEQFNPSLRNFIAMGKNYEKALAG 47


>pdb|1WDZ|A Chain A, Crystal Structure Of Rcb Domain Of Irsp53
 pdb|1WDZ|B Chain B, Crystal Structure Of Rcb Domain Of Irsp53
          Length = 242

 Score = 26.9 bits (58), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 44 TEQMYKGLVEHCKKVLKGFLGILRVYKGCLAG 75
          TE +YK ++E     L+ F+ + + Y+  LAG
Sbjct: 16 TENVYKTIMEQFNPSLRNFIAMGKNYEKALAG 47


>pdb|4IFD|G Chain G, Crystal Structure Of An 11-subunit Eukaryotic Exosome
           Complex Bound To Rna
          Length = 242

 Score = 25.8 bits (55), Expect = 6.5,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 27  AILCNDTLVKKMEELENTEQMYKGLVEHCKK 57
           AI  N  +  K EEL NT   Y+ ++E C+K
Sbjct: 189 AIGLNGKIWVKCEELSNTLACYRTIMECCQK 219


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.140    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,707,583
Number of Sequences: 62578
Number of extensions: 48823
Number of successful extensions: 103
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99
Number of HSP's gapped (non-prelim): 4
length of query: 77
length of database: 14,973,337
effective HSP length: 46
effective length of query: 31
effective length of database: 12,094,749
effective search space: 374937219
effective search space used: 374937219
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)