Query psy16402
Match_columns 77
No_of_seqs 35 out of 37
Neff 2.1
Searched_HMMs 29240
Date Fri Aug 16 20:25:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16402.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16402hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i4d_A Arfaptin 2, partner of 98.1 1E-05 3.5E-10 59.2 6.8 42 31-72 6-47 (224)
2 3vmx_A Voltage-gated hydrogen 82.4 3.1 0.0001 24.7 4.7 42 21-62 3-44 (48)
3 4a3u_A NCR, NADH\:flavin oxido 71.5 0.69 2.3E-05 33.9 -0.4 18 23-40 313-330 (358)
4 2jd6_0 Ferritin homolog, ferri 66.2 21 0.00071 22.5 5.9 32 1-32 2-33 (174)
5 4gbu_A NADPH dehydrogenase 1; 65.1 1.3 4.4E-05 32.9 -0.0 18 23-40 346-363 (400)
6 2f6m_A Suppressor protein STP2 61.8 11 0.00036 23.1 3.7 47 10-56 15-61 (65)
7 2a15_A Hypothetical protein RV 59.3 2.9 0.0001 24.5 0.8 25 1-25 1-25 (139)
8 3f7s_A Uncharacterized NTF2-li 53.6 8.7 0.0003 22.7 2.2 28 1-28 2-29 (142)
9 1chk_A Chitosanase, endochitos 46.3 43 0.0015 24.8 5.4 55 18-73 91-148 (238)
10 1vyr_A Pentaerythritol tetrani 43.3 3.2 0.00011 30.5 -1.1 18 23-40 321-338 (364)
11 3h3h_A Uncharacterized snoal-l 43.2 13 0.00045 21.6 1.8 28 1-28 2-29 (122)
12 2r14_A Morphinone reductase; H 42.1 3.4 0.00012 30.7 -1.1 18 23-40 326-343 (377)
13 3gka_A N-ethylmaleimide reduct 42.0 3.4 0.00012 30.8 -1.1 18 23-40 314-331 (361)
14 2hsa_B 12-oxophytodienoate red 42.0 3.4 0.00012 31.0 -1.1 18 23-40 346-363 (402)
15 2gou_A Oxidoreductase, FMN-bin 40.0 3.9 0.00013 30.1 -1.0 18 23-40 320-337 (365)
16 1icp_A OPR1, 12-oxophytodienoa 39.5 3.9 0.00013 30.2 -1.1 18 23-40 328-345 (376)
17 3hgj_A Chromate reductase; TIM 39.4 3.4 0.00012 29.9 -1.4 18 23-40 316-333 (349)
18 4ab4_A Xenobiotic reductase B; 39.3 3.2 0.00011 31.0 -1.6 18 23-40 306-323 (362)
19 3gr7_A NADPH dehydrogenase; fl 39.2 3.9 0.00013 29.8 -1.1 18 23-40 305-322 (340)
20 4h8s_A DCC-interacting protein 38.5 83 0.0028 22.5 5.8 35 39-73 51-85 (407)
21 1z41_A YQJM, probable NADH-dep 38.1 4.2 0.00014 29.2 -1.1 18 23-40 305-322 (338)
22 3d9r_A Ketosteroid isomerase-l 38.0 14 0.00048 21.0 1.4 21 7-27 11-31 (135)
23 3l5l_A Xenobiotic reductase A; 37.7 6.4 0.00022 28.7 -0.2 18 23-40 323-340 (363)
24 1ezj_A Nucleocapsid phosphopro 36.9 98 0.0033 21.0 5.7 45 15-59 51-100 (115)
25 2iw1_A Lipopolysaccharide core 36.3 57 0.0019 21.2 4.3 42 32-73 325-368 (374)
26 3ci9_A Heat shock factor-bindi 35.7 19 0.00065 20.8 1.7 24 21-44 22-46 (48)
27 2cr7_A Paired amphipathic heli 35.1 29 0.001 20.9 2.6 41 36-76 29-76 (80)
28 3aty_A Tcoye, prostaglandin F2 34.7 5.3 0.00018 29.7 -1.1 18 23-40 334-351 (379)
29 1aq5_A Matrilin-1, CMP, cartil 34.1 25 0.00085 20.5 2.0 12 33-44 34-45 (47)
30 4ath_A MITF, microphthalmia-as 33.5 37 0.0013 21.6 2.9 25 23-47 57-81 (83)
31 2g18_A Phycocyanobilin:ferredo 33.3 72 0.0025 23.1 4.8 66 3-68 175-240 (253)
32 2q13_A DCC-interacting protein 33.2 1.1E+02 0.0038 21.7 5.7 34 39-72 28-61 (385)
33 3a2a_A Voltage-gated hydrogen 32.3 87 0.003 19.1 4.9 41 22-62 11-51 (58)
34 1vhn_A Putative flavin oxidore 31.9 8.9 0.00031 27.0 -0.2 18 23-40 211-228 (318)
35 3okp_A GDP-mannose-dependent a 31.7 95 0.0032 20.2 4.8 41 27-67 323-367 (394)
36 3k30_A Histamine dehydrogenase 31.4 5.2 0.00018 30.8 -1.6 18 23-40 322-339 (690)
37 1zxa_A CGMP-dependent protein 30.8 74 0.0025 19.4 3.9 32 36-67 25-56 (67)
38 3i0y_A Putative polyketide cyc 30.6 28 0.00097 20.0 1.9 24 1-24 2-25 (140)
39 3bb9_A Putative orphan protein 30.4 18 0.00061 21.8 1.0 23 1-23 24-46 (148)
40 2czy_A Paired amphipathic heli 30.2 24 0.00082 21.1 1.6 61 4-76 3-70 (77)
41 1ntc_A Protein (nitrogen regul 30.0 35 0.0012 20.0 2.3 14 23-41 75-88 (91)
42 2wuj_A Septum site-determining 29.6 26 0.00088 20.0 1.6 31 13-43 25-55 (57)
43 1ci6_A Transcription factor AT 29.4 55 0.0019 18.9 3.0 23 31-53 39-61 (63)
44 1oh0_A Steroid delta-isomerase 29.1 28 0.00095 19.6 1.6 25 1-25 1-25 (131)
45 3dmc_A NTF2-like protein; stru 28.8 23 0.0008 21.5 1.4 23 1-23 3-28 (134)
46 3oj5_A Ferritin family protein 27.9 1.2E+02 0.0042 19.5 5.9 32 1-32 7-38 (189)
47 3l5a_A NADH/flavin oxidoreduct 27.7 8.3 0.00028 29.2 -1.0 18 23-40 344-361 (419)
48 2dnx_A Syntaxin-12; snare, HAB 27.6 1.2E+02 0.0041 19.3 5.0 24 47-70 92-115 (130)
49 1usu_A Heat shock protein HSP8 27.6 72 0.0025 23.4 4.0 18 23-40 107-124 (260)
50 2q12_A DIP13 alpha, DCC-intera 27.5 1.4E+02 0.0049 20.0 5.5 35 39-73 28-62 (265)
51 3tma_A Methyltransferase; thum 27.3 7.8 0.00027 27.0 -1.1 35 26-60 274-308 (354)
52 3tjl_A NADPH dehydrogenase; OL 26.9 12 0.00042 28.6 -0.2 18 23-40 344-361 (407)
53 3ldu_A Putative methylase; str 26.7 22 0.00074 26.0 1.1 32 26-57 303-334 (385)
54 4ati_A MITF, microphthalmia-as 26.6 22 0.00075 22.9 1.0 20 28-47 97-116 (118)
55 2gq0_A Chaperone protein HTPG; 26.4 1.2E+02 0.0041 22.8 5.1 18 23-40 105-122 (303)
56 3cu3_A Domain of unknown funct 26.3 32 0.0011 21.2 1.7 19 7-25 16-34 (172)
57 3kru_A NADH:flavin oxidoreduct 26.3 6.1 0.00021 29.1 -1.9 17 23-39 305-321 (343)
58 2cmr_A GP41, transmembrane gly 25.7 57 0.0019 24.2 3.2 40 37-76 169-219 (226)
59 1y6z_A Heat shock protein, put 25.3 80 0.0028 23.0 3.9 17 23-39 109-125 (263)
60 1o94_A Tmadh, trimethylamine d 24.5 8.5 0.00029 30.1 -1.5 18 23-40 319-336 (729)
61 1z23_A CRK-associated substrat 24.4 1.8E+02 0.0063 20.2 6.7 48 6-58 61-115 (163)
62 3t98_B Nucleoporin NUP58/NUP45 23.8 1.4E+02 0.0048 18.7 5.1 28 34-61 10-37 (93)
63 1eto_A FIS, factor for inversi 23.6 38 0.0013 20.9 1.6 13 23-40 82-94 (98)
64 1ps9_A 2,4-dienoyl-COA reducta 23.5 7.7 0.00026 29.7 -1.9 18 23-40 308-325 (671)
65 2x6q_A Trehalose-synthase TRET 22.5 1.8E+02 0.0061 19.4 5.0 34 32-65 367-400 (416)
66 2p22_C Protein SRN2; endosome, 22.5 2E+02 0.0068 19.9 8.3 57 13-70 54-110 (192)
67 2w9y_A CE-FAR-7, fatty acid/re 22.4 17 0.00057 25.0 -0.2 39 25-63 95-135 (140)
68 3en8_A Uncharacterized NTF-2 l 21.9 36 0.0012 20.5 1.3 22 1-25 2-23 (128)
69 2l81_A Enhancer of filamentati 21.8 2.2E+02 0.0074 20.1 6.2 48 6-58 65-119 (176)
70 2gek_A Phosphatidylinositol ma 21.5 1.1E+02 0.0038 20.0 3.7 29 32-60 337-365 (406)
71 2jjm_A Glycosyl transferase, g 21.1 1.9E+02 0.0065 19.2 4.8 29 32-60 338-366 (394)
72 3c48_A Predicted glycosyltrans 20.9 2E+02 0.0067 19.3 6.1 30 32-61 379-408 (438)
73 1bh9_A TAFII18; histone fold, 20.9 61 0.0021 18.0 2.0 20 3-22 21-40 (45)
74 1hk7_A Heat shock protein HSP8 20.2 99 0.0034 23.1 3.6 18 23-40 105-122 (288)
75 2bfw_A GLGA glycogen synthase; 20.2 1.5E+02 0.005 17.6 4.0 30 32-61 168-198 (200)
No 1
>1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex, signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP: a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A*
Probab=98.06 E-value=1e-05 Score=59.16 Aligned_cols=42 Identities=14% Similarity=0.259 Sum_probs=40.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16402 31 NDTLVKKMEELENTEQMYKGLVEHCKKVLKGFLGILRVYKGC 72 (77)
Q Consensus 31 ND~LvkkleeLe~t~~~YkgLv~h~k~~Lk~~~~l~~~~k~f 72 (77)
.-.|++|||+|+++...|++|++|++++++.|+.+++++++|
T Consensus 6 D~EL~~klE~l~~~q~~Y~~L~~~~~~l~~~~~~l~qtq~~l 47 (224)
T 1i4d_A 6 DLELELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHAL 47 (224)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999987
No 2
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=82.38 E-value=3.1 Score=24.70 Aligned_cols=42 Identities=24% Similarity=0.202 Sum_probs=34.0
Q ss_pred hcchhHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16402 21 NQSLSRAILCNDTLVKKMEELENTEQMYKGLVEHCKKVLKGF 62 (77)
Q Consensus 21 ~~GLSRAILCND~LvkkleeLe~t~~~YkgLv~h~k~~Lk~~ 62 (77)
.|-+||-=-.||.||.|..+||....--..=++..+++||..
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkqH 44 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQN 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHc
Confidence 466788888999999999999987766666778888888753
No 3
>4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis}
Probab=71.48 E-value=0.69 Score=33.93 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=16.9
Q ss_pred chhHHhhcchHHHHHHHH
Q psy16402 23 SLSRAILCNDTLVKKMEE 40 (77)
Q Consensus 23 GLSRAILCND~Lvkklee 40 (77)
|+.|+.|+|..|++|+.+
T Consensus 313 ~~gR~~ladPdlp~k~~~ 330 (358)
T 4a3u_A 313 SFGRPFIGNPDLPRRFFE 330 (358)
T ss_dssp EESHHHHHCTTHHHHHHH
T ss_pred HhhHHHHhChhHHHHHHh
Confidence 899999999999999875
No 4
>2jd6_0 Ferritin homolog, ferritin; metal transport, iron, pores, archaeon, entry channels, thermostability, hyperthermophIle, ferroxidase center; 2.75A {Pyrococcus furiosus} PDB: 2jd7_0 2jd8_0 2x17_0
Probab=66.15 E-value=21 Score=22.55 Aligned_cols=32 Identities=22% Similarity=0.195 Sum_probs=28.4
Q ss_pred CcchhHHHHhhhHHHHhhhhhcchhHHhhcch
Q psy16402 1 MSTTTADALDSLLDDYLQGLNQSLSRAILCND 32 (77)
Q Consensus 1 Mss~TADAL~~~~~~~~~~~~~GLSRAILCND 32 (77)
|++.+.++|...+.+-++..++=++=|..||+
T Consensus 2 ~~~~~~~~Ln~~l~~El~a~~~Yl~~a~~~~~ 33 (174)
T 2jd6_0 2 LSERMLKALNDQLNRELYSAYLYFAMAAYFED 33 (174)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67889999999999999999988888888884
No 5
>4gbu_A NADPH dehydrogenase 1; alpha/beta barrel, enenone reductase, alkene reductase, NADP oxidoreductase, carvone, enenatioselectivity; HET: 0WV 1PE FMN; 1.18A {Saccharomyces pastorianus} PDB: 4ge8_A* 1oya_A* 1oyb_A* 1oyc_A* 3tx9_A* 3rnd_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A*
Probab=65.14 E-value=1.3 Score=32.93 Aligned_cols=18 Identities=28% Similarity=0.527 Sum_probs=16.9
Q ss_pred chhHHhhcchHHHHHHHH
Q psy16402 23 SLSRAILCNDTLVKKMEE 40 (77)
Q Consensus 23 GLSRAILCND~Lvkklee 40 (77)
|+.|+.|+|..|++|+++
T Consensus 346 ~~gR~~iadPdl~~k~~~ 363 (400)
T 4gbu_A 346 GYGRFFISNPDLVDRLEK 363 (400)
T ss_dssp ECCHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHCcHHHHHHHc
Confidence 899999999999999976
No 6
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=61.83 E-value=11 Score=23.13 Aligned_cols=47 Identities=26% Similarity=0.339 Sum_probs=39.1
Q ss_pred hhhHHHHhhhhhcchhHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16402 10 DSLLDDYLQGLNQSLSRAILCNDTLVKKMEELENTEQMYKGLVEHCK 56 (77)
Q Consensus 10 ~~~~~~~~~~~~~GLSRAILCND~LvkkleeLe~t~~~YkgLv~h~k 56 (77)
|.-++|-+-.|.++|.|..+.=|.-+|....|-+..=+.|.++..+.
T Consensus 15 d~AieDaiy~L~~aL~~g~I~l~~ylK~vR~LaReQF~~Rali~Ki~ 61 (65)
T 2f6m_A 15 DYALTDTIEALSRMLHRGTIPLDTFVKQGRELARQQFLVRWHIQRIT 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45578888999999999999999999999999888777777776544
No 7
>2a15_A Hypothetical protein RV0760C; beta-alpha-barrel, structural genomics, PSI, protein structure initiative; 1.68A {Mycobacterium tuberculosis} SCOP: d.17.4.3 PDB: 2z76_A* 2z77_A* 2z7a_A
Probab=59.29 E-value=2.9 Score=24.55 Aligned_cols=25 Identities=12% Similarity=-0.033 Sum_probs=17.9
Q ss_pred CcchhHHHHhhhHHHHhhhhhcchh
Q psy16402 1 MSTTTADALDSLLDDYLQGLNQSLS 25 (77)
Q Consensus 1 Mss~TADAL~~~~~~~~~~~~~GLS 25 (77)
|++.+.+++..++..|.+.+|.|=.
T Consensus 1 m~~~~~~~~~~~v~~~~~a~~~~D~ 25 (139)
T 2a15_A 1 MTQTTQSPALIASQSSWRCVQAHDR 25 (139)
T ss_dssp ----CCCHHHHHHHHHHHHHHTTCH
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCH
Confidence 7778888888999999999998743
No 8
>3f7s_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Pseudomonas putida KT2440}
Probab=53.61 E-value=8.7 Score=22.70 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=22.4
Q ss_pred CcchhHHHHhhhHHHHhhhhhcchhHHh
Q psy16402 1 MSTTTADALDSLLDDYLQGLNQSLSRAI 28 (77)
Q Consensus 1 Mss~TADAL~~~~~~~~~~~~~GLSRAI 28 (77)
|+++...++..+++.|.++++.|=--++
T Consensus 2 m~~~~~~~I~~l~~~~~~A~~~~D~~~~ 29 (142)
T 3f7s_A 2 MSTAAESEIRQLIERWMQAVRDRDIPGI 29 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CChhhHHHHHHHHHHHHHHHHcCCHHHH
Confidence 7777788899999999999887754443
No 9
>1chk_A Chitosanase, endochitosanase; anti-fungal protein, hydrolase, O-glycosyl, hydrolase (O-Gly; 2.40A {Streptomyces SP} SCOP: d.2.1.7
Probab=46.26 E-value=43 Score=24.83 Aligned_cols=55 Identities=20% Similarity=0.361 Sum_probs=41.2
Q ss_pred hhhhcchhHHh--hcchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Q psy16402 18 QGLNQSLSRAI--LCNDTLVKKMEELENTEQMYKGLVEHCKKV-LKGFLGILRVYKGCL 73 (77)
Q Consensus 18 ~~~~~GLSRAI--LCND~LvkkleeLe~t~~~YkgLv~h~k~~-Lk~~~~l~~~~k~f~ 73 (77)
.||..|+-.|| ++||+.-++-+.-+.-.--|..-|..+++. |+ -+.....|..++
T Consensus 91 ~GLd~~f~~~w~~aa~D~~fr~AQd~~~d~vYf~PAv~~Ak~~Gl~-aLgq~v~YDa~v 148 (238)
T 1chk_A 91 SGLGTPFTKDWATAAKDTVFQQAQNDERDRVYFDPAVSQAKADGLR-ALGQFAYYDAIV 148 (238)
T ss_dssp TTCHHHHHHHHHHHTTSHHHHHHHHHHHHHHTHHHHHHHHHHTTCC-HHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHcCCHHHHHHHHHHHHHhcchHHHHHHHhcCcc-cchhhhhhhHHH
Confidence 34444666666 789999999999999999999999999884 44 255555666665
No 10
>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...
Probab=43.34 E-value=3.2 Score=30.54 Aligned_cols=18 Identities=22% Similarity=0.538 Sum_probs=16.3
Q ss_pred chhHHhhcchHHHHHHHH
Q psy16402 23 SLSRAILCNDTLVKKMEE 40 (77)
Q Consensus 23 GLSRAILCND~Lvkklee 40 (77)
++.|+++.|..+++|+.+
T Consensus 321 ~~gR~~l~~P~~~~~~~~ 338 (364)
T 1vyr_A 321 AFGRDYIANPDLVARLQK 338 (364)
T ss_dssp EESHHHHHCTTHHHHHHH
T ss_pred EECHHHHhChhHHHHHHc
Confidence 789999999999999864
No 11
>3h3h_A Uncharacterized snoal-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE UNL MES; 1.60A {Burkholderia thailandensis E264}
Probab=43.18 E-value=13 Score=21.59 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=19.0
Q ss_pred CcchhHHHHhhhHHHHhhhhhcchhHHh
Q psy16402 1 MSTTTADALDSLLDDYLQGLNQSLSRAI 28 (77)
Q Consensus 1 Mss~TADAL~~~~~~~~~~~~~GLSRAI 28 (77)
|++-|.+....+++.|.+.+|.+=.-+|
T Consensus 2 m~~m~~~~~~~~~~~~~~a~n~~D~~~l 29 (122)
T 3h3h_A 2 MEPITQAFAQQFSREWIDAWNAHDLDAI 29 (122)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCcCCHHHHHHHHHHHHHHHhccCHHHH
Confidence 4555556667789999999998754444
No 12
>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*
Probab=42.11 E-value=3.4 Score=30.67 Aligned_cols=18 Identities=17% Similarity=0.394 Sum_probs=16.3
Q ss_pred chhHHhhcchHHHHHHHH
Q psy16402 23 SLSRAILCNDTLVKKMEE 40 (77)
Q Consensus 23 GLSRAILCND~Lvkklee 40 (77)
++.|+++.|..+++|+.+
T Consensus 326 ~igR~~l~~P~l~~k~~~ 343 (377)
T 2r14_A 326 AFGRPFIANPDLPERFRL 343 (377)
T ss_dssp EESHHHHHCTTHHHHHHH
T ss_pred eecHHHHhCchHHHHHHc
Confidence 799999999999999864
No 13
>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0
Probab=42.04 E-value=3.4 Score=30.79 Aligned_cols=18 Identities=11% Similarity=0.322 Sum_probs=16.6
Q ss_pred chhHHhhcchHHHHHHHH
Q psy16402 23 SLSRAILCNDTLVKKMEE 40 (77)
Q Consensus 23 GLSRAILCND~Lvkklee 40 (77)
++.|+.++|..+++|+.+
T Consensus 314 ~iGR~~ladPdl~~k~~~ 331 (361)
T 3gka_A 314 AWGKLFIANPDLPRRFKL 331 (361)
T ss_dssp EESHHHHHCTTHHHHHHH
T ss_pred EECHHhHhCcHHHHHHHh
Confidence 899999999999999875
No 14
>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A*
Probab=41.99 E-value=3.4 Score=30.98 Aligned_cols=18 Identities=28% Similarity=0.421 Sum_probs=16.3
Q ss_pred chhHHhhcchHHHHHHHH
Q psy16402 23 SLSRAILCNDTLVKKMEE 40 (77)
Q Consensus 23 GLSRAILCND~Lvkklee 40 (77)
++.|+.++|..+++|+.+
T Consensus 346 ~igR~~l~dP~l~~k~~~ 363 (402)
T 2hsa_B 346 SYGRLFISNPDLVMRIKL 363 (402)
T ss_dssp EESHHHHHCTTHHHHHHH
T ss_pred eecHHHHhCchHHHHHHh
Confidence 799999999999999864
No 15
>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*
Probab=40.01 E-value=3.9 Score=30.06 Aligned_cols=18 Identities=17% Similarity=0.462 Sum_probs=16.2
Q ss_pred chhHHhhcchHHHHHHHH
Q psy16402 23 SLSRAILCNDTLVKKMEE 40 (77)
Q Consensus 23 GLSRAILCND~Lvkklee 40 (77)
++.|+++.|..+++|+.+
T Consensus 320 ~igR~~i~~P~l~~~~~~ 337 (365)
T 2gou_A 320 GFGRPFIANPDLPERLRH 337 (365)
T ss_dssp ECCHHHHHCTTHHHHHHH
T ss_pred hhcHHHHhCchHHHHHHc
Confidence 689999999999999864
No 16
>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*
Probab=39.54 E-value=3.9 Score=30.24 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=16.2
Q ss_pred chhHHhhcchHHHHHHHH
Q psy16402 23 SLSRAILCNDTLVKKMEE 40 (77)
Q Consensus 23 GLSRAILCND~Lvkklee 40 (77)
++.|+.++|..+++|+.+
T Consensus 328 ~~gR~~l~~P~l~~k~~~ 345 (376)
T 1icp_A 328 AYGRLFISNPDLPKRFEL 345 (376)
T ss_dssp EESHHHHHCTTHHHHHHH
T ss_pred eecHHHHhCccHHHHHHc
Confidence 789999999999999863
No 17
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=39.35 E-value=3.4 Score=29.93 Aligned_cols=18 Identities=17% Similarity=0.235 Sum_probs=16.1
Q ss_pred chhHHhhcchHHHHHHHH
Q psy16402 23 SLSRAILCNDTLVKKMEE 40 (77)
Q Consensus 23 GLSRAILCND~Lvkklee 40 (77)
++.|+++.|..+++|+.+
T Consensus 316 ~iGR~~lanPdl~~k~~~ 333 (349)
T 3hgj_A 316 LLGRVLLRDPYFPLRAAK 333 (349)
T ss_dssp EESTHHHHCTTHHHHHHH
T ss_pred EecHHHHhCchHHHHHHH
Confidence 789999999999999864
No 18
>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}
Probab=39.32 E-value=3.2 Score=30.95 Aligned_cols=18 Identities=11% Similarity=0.307 Sum_probs=16.5
Q ss_pred chhHHhhcchHHHHHHHH
Q psy16402 23 SLSRAILCNDTLVKKMEE 40 (77)
Q Consensus 23 GLSRAILCND~Lvkklee 40 (77)
++.|+.++|..+++|+.+
T Consensus 306 ~iGR~~lanPdl~~k~~~ 323 (362)
T 4ab4_A 306 AFGVPFIANPDLPARLAA 323 (362)
T ss_dssp EESHHHHHCTTHHHHHHT
T ss_pred EECHHhHhCcHHHHHHHc
Confidence 899999999999999865
No 19
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=39.20 E-value=3.9 Score=29.75 Aligned_cols=18 Identities=22% Similarity=0.128 Sum_probs=16.4
Q ss_pred chhHHhhcchHHHHHHHH
Q psy16402 23 SLSRAILCNDTLVKKMEE 40 (77)
Q Consensus 23 GLSRAILCND~Lvkklee 40 (77)
++.|+.+.|..+++|+.+
T Consensus 305 ~iGR~~lanPdl~~ki~~ 322 (340)
T 3gr7_A 305 FLGRELLRNPYWPYAAAR 322 (340)
T ss_dssp EECHHHHHCTTHHHHHHH
T ss_pred EecHHHHhCchHHHHHHH
Confidence 789999999999999865
No 20
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=38.48 E-value=83 Score=22.54 Aligned_cols=35 Identities=9% Similarity=0.024 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16402 39 EELENTEQMYKGLVEHCKKVLKGFLGILRVYKGCL 73 (77)
Q Consensus 39 eeLe~t~~~YkgLv~h~k~~Lk~~~~l~~~~k~f~ 73 (77)
+++++.+.-.+.++..++++..+.-........|.
T Consensus 51 ~~~~~l~~~l~kl~k~~~~~~~~~~~~~~a~~~f~ 85 (407)
T 4h8s_A 51 EDAGTLTDYTNQLLQAMQRVYGAQNEMCLATQQLS 85 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666778888888888888887777777666664
No 21
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=38.14 E-value=4.2 Score=29.19 Aligned_cols=18 Identities=11% Similarity=0.268 Sum_probs=16.1
Q ss_pred chhHHhhcchHHHHHHHH
Q psy16402 23 SLSRAILCNDTLVKKMEE 40 (77)
Q Consensus 23 GLSRAILCND~Lvkklee 40 (77)
++.|+++.|..+++|+.+
T Consensus 305 ~iGR~~i~nPdl~~ki~~ 322 (338)
T 1z41_A 305 FIGRELLRDPFFARTAAK 322 (338)
T ss_dssp EECHHHHHCTTHHHHHHH
T ss_pred eecHHHHhCchHHHHHHc
Confidence 689999999999999864
No 22
>3d9r_A Ketosteroid isomerase-like protein; YP_049581.1, structural joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 2.40A {Pectobacterium atrosepticum} SCOP: d.17.4.27
Probab=38.00 E-value=14 Score=20.96 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=15.9
Q ss_pred HHHhhhHHHHhhhhhcchhHH
Q psy16402 7 DALDSLLDDYLQGLNQSLSRA 27 (77)
Q Consensus 7 DAL~~~~~~~~~~~~~GLSRA 27 (77)
.++..+++.|.+++|.|=.-+
T Consensus 11 ~~i~~~~~~~~~a~~~~D~~~ 31 (135)
T 3d9r_A 11 AVIEAAAIAYLTAFNRADIPA 31 (135)
T ss_dssp HHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHH
Confidence 467788999999998874433
No 23
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*
Probab=37.70 E-value=6.4 Score=28.72 Aligned_cols=18 Identities=22% Similarity=0.178 Sum_probs=16.2
Q ss_pred chhHHhhcchHHHHHHHH
Q psy16402 23 SLSRAILCNDTLVKKMEE 40 (77)
Q Consensus 23 GLSRAILCND~Lvkklee 40 (77)
++.|+++.|..+++|+.+
T Consensus 323 ~iGR~~lanPdl~~k~~~ 340 (363)
T 3l5l_A 323 SVGRAHLADPHWAYFAAK 340 (363)
T ss_dssp ECCHHHHHCTTHHHHHHH
T ss_pred EecHHHHhCchHHHHHHH
Confidence 789999999999999864
No 24
>1ezj_A Nucleocapsid phosphoprotein; four stranded coiled coil, viral polymerase, T viral protein, transferase; 1.90A {Sendai virus} SCOP: h.1.14.1
Probab=36.94 E-value=98 Score=21.04 Aligned_cols=45 Identities=27% Similarity=0.292 Sum_probs=33.1
Q ss_pred HHhhhhhcch----hHHhhcchHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q psy16402 15 DYLQGLNQSL----SRAILCNDTLVKKME-ELENTEQMYKGLVEHCKKVL 59 (77)
Q Consensus 15 ~~~~~~~~GL----SRAILCND~Lvkkle-eLe~t~~~YkgLv~h~k~~L 59 (77)
+++-|+--|. -|-+=-||+++|.++ |.+.....||.++|.-|.-+
T Consensus 51 ~~l~Gl~i~v~~~~~~kv~en~~~L~QIQ~ei~s~rd~hkR~~E~QkEQ~ 100 (115)
T 1ezj_A 51 FNVCGLILSAEKSSARKVDENKQLLKQIQESVESFRDIYKRFSEYQKEQN 100 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 5566665554 455777999999985 57788889999998877643
No 25
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=36.30 E-value=57 Score=21.16 Aligned_cols=42 Identities=5% Similarity=0.052 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHh
Q psy16402 32 DTLVKKMEELENTEQMYKGLVEHCKKVLKGF--LGILRVYKGCL 73 (77)
Q Consensus 32 D~LvkkleeLe~t~~~YkgLv~h~k~~Lk~~--~~l~~~~k~f~ 73 (77)
+.+.+.++++-+..+.++.+.+.+++..+.+ ....+.+..++
T Consensus 325 ~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 368 (374)
T 2iw1_A 325 EQLNEVLRKALTQSPLRMAWAENARHYADTQDLYSLPEKAADII 368 (374)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4688999998888888888888888887766 44444444443
No 26
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=35.74 E-value=19 Score=20.80 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=16.2
Q ss_pred hcchhHHhhcc-hHHHHHHHHHHHH
Q psy16402 21 NQSLSRAILCN-DTLVKKMEELENT 44 (77)
Q Consensus 21 ~~GLSRAILCN-D~LvkkleeLe~t 44 (77)
-|.+|..|+-- |..-+|+++||+.
T Consensus 22 Fq~mS~~I~~riDdM~~RIDdLE~s 46 (48)
T 3ci9_A 22 FQTISDQIIGRIDDMSSRIDDLEKN 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 46777777654 7788888888764
No 27
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=35.14 E-value=29 Score=20.90 Aligned_cols=41 Identities=10% Similarity=0.306 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhCC
Q psy16402 36 KKMEELENTEQMYK-------GLVEHCKKVLKGFLGILRVYKGCLAGG 76 (77)
Q Consensus 36 kkleeLe~t~~~Yk-------gLv~h~k~~Lk~~~~l~~~~k~f~~~~ 76 (77)
.+-++.-+..+.|+ +.++..+.+++.+-+++.-+..||.-|
T Consensus 29 ~~Y~~FL~im~~fk~~~~~~~~v~~rV~~Lf~~hpdLi~gFn~FLP~~ 76 (80)
T 2cr7_A 29 ATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNAFLPSG 76 (80)
T ss_dssp HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHGGGCHHHHHHHHHHSSCS
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCHHHHHHHHHHCcCC
Confidence 34444444555554 888999999999999999999999754
No 28
>3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A*
Probab=34.65 E-value=5.3 Score=29.75 Aligned_cols=18 Identities=17% Similarity=0.444 Sum_probs=16.3
Q ss_pred chhHHhhcchHHHHHHHH
Q psy16402 23 SLSRAILCNDTLVKKMEE 40 (77)
Q Consensus 23 GLSRAILCND~Lvkklee 40 (77)
++.|+.+.|..+++|+.+
T Consensus 334 ~igR~~l~~P~l~~k~~~ 351 (379)
T 3aty_A 334 AFGAKFIANPDLVERAQQ 351 (379)
T ss_dssp EESHHHHHCTTHHHHHHH
T ss_pred EecHHHHhCcHHHHHHHc
Confidence 689999999999999864
No 29
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=34.07 E-value=25 Score=20.54 Aligned_cols=12 Identities=42% Similarity=0.722 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHH
Q psy16402 33 TLVKKMEELENT 44 (77)
Q Consensus 33 ~LvkkleeLe~t 44 (77)
.+.+||+.|||.
T Consensus 34 ~vt~rle~lEnr 45 (47)
T 1aq5_A 34 AVAKRIEALENK 45 (47)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 788999988874
No 30
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=33.50 E-value=37 Score=21.58 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=17.1
Q ss_pred chhHHhhcchHHHHHHHHHHHHHHH
Q psy16402 23 SLSRAILCNDTLVKKMEELENTEQM 47 (77)
Q Consensus 23 GLSRAILCND~LvkkleeLe~t~~~ 47 (77)
-..+.-..|-.|..|++|||..++.
T Consensus 57 r~k~le~~n~~l~~riqELE~qa~~ 81 (83)
T 4ath_A 57 RQKKLEHANRHLLLRVQELEMQARA 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 3445566777888888888876553
No 31
>2g18_A Phycocyanobilin:ferredoxin oxidoreductase; alpha-beta-alpha sandwich; 2.50A {Anabaena SP}
Probab=33.35 E-value=72 Score=23.08 Aligned_cols=66 Identities=11% Similarity=0.045 Sum_probs=47.1
Q ss_pred chhHHHHhhhHHHHhhhhhcchhHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16402 3 TTTADALDSLLDDYLQGLNQSLSRAILCNDTLVKKMEELENTEQMYKGLVEHCKKVLKGFLGILRV 68 (77)
Q Consensus 3 s~TADAL~~~~~~~~~~~~~GLSRAILCND~LvkkleeLe~t~~~YkgLv~h~k~~Lk~~~~l~~~ 68 (77)
+...+|.-..+++||+-..+-...|--.++.-..++.+-++.=-.|+.-=+.+.+||+.+|+-.-+
T Consensus 175 ~ee~~aF~~~~~~yL~~~~~~~~~a~~~~~~~~~~i~~~Q~~Y~~~qaenDpar~vL~~~FG~ewa 240 (253)
T 2g18_A 175 PEEEAMFLGRVREFLQVHCQGAIAASPVSAEQKQQILAGQHNYCSKQQQNDKTRRVLEKAFGVDWA 240 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCTHHHHHHHHHCHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHHHHHhCcHHHHHHHHcCHHHH
Confidence 345678778888999887665555555566556666666666667777778888999999875433
No 32
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=33.22 E-value=1.1e+02 Score=21.72 Aligned_cols=34 Identities=6% Similarity=0.025 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16402 39 EELENTEQMYKGLVEHCKKVLKGFLGILRVYKGC 72 (77)
Q Consensus 39 eeLe~t~~~YkgLv~h~k~~Lk~~~~l~~~~k~f 72 (77)
++++.++.-.+.++..++++..+.-..+++.+.|
T Consensus 28 ~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f 61 (385)
T 2q13_A 28 EDATAISNYMNQLYQAMHRIYDAQNELSAATHLT 61 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777888888888777666665555544
No 33
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=32.33 E-value=87 Score=19.11 Aligned_cols=41 Identities=24% Similarity=0.234 Sum_probs=31.3
Q ss_pred cchhHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16402 22 QSLSRAILCNDTLVKKMEELENTEQMYKGLVEHCKKVLKGF 62 (77)
Q Consensus 22 ~GLSRAILCND~LvkkleeLe~t~~~YkgLv~h~k~~Lk~~ 62 (77)
+-++|-==.|-.|+.|.++||..-.--..-++...++||-+
T Consensus 11 ~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkqH 51 (58)
T 3a2a_A 11 RQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQH 51 (58)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34556556789999999999877666667788888888754
No 34
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1
Probab=31.86 E-value=8.9 Score=27.05 Aligned_cols=18 Identities=11% Similarity=0.300 Sum_probs=15.9
Q ss_pred chhHHhhcchHHHHHHHH
Q psy16402 23 SLSRAILCNDTLVKKMEE 40 (77)
Q Consensus 23 GLSRAILCND~Lvkklee 40 (77)
.+.|+.+.|+.+++++.+
T Consensus 211 ~iGR~~l~~P~l~~~~~~ 228 (318)
T 1vhn_A 211 LVARGAIGRPWIFKQIKD 228 (318)
T ss_dssp EESGGGTTCTTHHHHHHH
T ss_pred EECHHHHhCcchHHHHHH
Confidence 678999999999999865
No 35
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=31.75 E-value=95 Score=20.18 Aligned_cols=41 Identities=10% Similarity=0.031 Sum_probs=29.5
Q ss_pred Hhhcc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16402 27 AILCN----DTLVKKMEELENTEQMYKGLVEHCKKVLKGFLGILR 67 (77)
Q Consensus 27 AILCN----D~LvkkleeLe~t~~~YkgLv~h~k~~Lk~~~~l~~ 67 (77)
.++++ +.+++.++++-+..+.++.+.+.+++..+..|....
T Consensus 323 g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~ 367 (394)
T 3okp_A 323 GLVVEGSDVDKLSELLIELLDDPIRRAAMGAAGRAHVEAEWSWEI 367 (394)
T ss_dssp EEECCTTCHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTBHHH
T ss_pred ceEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 44555 678889988888888888888888877665444333
No 36
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=31.40 E-value=5.2 Score=30.80 Aligned_cols=18 Identities=17% Similarity=0.333 Sum_probs=16.6
Q ss_pred chhHHhhcchHHHHHHHH
Q psy16402 23 SLSRAILCNDTLVKKMEE 40 (77)
Q Consensus 23 GLSRAILCND~Lvkklee 40 (77)
++.|+.++|..+++|+.+
T Consensus 322 ~~gR~~~~~P~~~~~~~~ 339 (690)
T 3k30_A 322 GAARPSIADPFLPNKIRD 339 (690)
T ss_dssp EESHHHHHCTTHHHHHHT
T ss_pred EEcHHhHhCccHHHHHHc
Confidence 899999999999999865
No 37
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=30.78 E-value=74 Score=19.40 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16402 36 KKMEELENTEQMYKGLVEHCKKVLKGFLGILR 67 (77)
Q Consensus 36 kkleeLe~t~~~YkgLv~h~k~~Lk~~~~l~~ 67 (77)
.++.+||.+-+-.+..+.+.+..|.-|..+..
T Consensus 25 e~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 25 ERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35778888888889999999999988877665
No 38
>3i0y_A Putative polyketide cyclase; cystatin-like fold, structural genomics, joint center for ST genomics, JCSG, protein structure initiative; HET: MSE UNL; 1.50A {Xanthomonas campestris PV}
Probab=30.58 E-value=28 Score=20.00 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=16.4
Q ss_pred CcchhHHHHhhhHHHHhhhhhcch
Q psy16402 1 MSTTTADALDSLLDDYLQGLNQSL 24 (77)
Q Consensus 1 Mss~TADAL~~~~~~~~~~~~~GL 24 (77)
||.+++-.-..++..|.+.+|+|=
T Consensus 2 m~~~~~m~~~~~v~~~~~a~~~~D 25 (140)
T 3i0y_A 2 MSESNRQRATGLVQAYYEAFNRGD 25 (140)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cccccCCCHHHHHHHHHHHHHcCC
Confidence 666655445577888998888763
No 39
>3bb9_A Putative orphan protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: d.17.4.16
Probab=30.35 E-value=18 Score=21.78 Aligned_cols=23 Identities=9% Similarity=0.144 Sum_probs=17.5
Q ss_pred CcchhHHHHhhhHHHHhhhhhcc
Q psy16402 1 MSTTTADALDSLLDDYLQGLNQS 23 (77)
Q Consensus 1 Mss~TADAL~~~~~~~~~~~~~G 23 (77)
|..++..++..+++.|.++++.|
T Consensus 24 ~~~~~~~~i~~~~~~~~~A~~~~ 46 (148)
T 3bb9_A 24 AFIGVDSAAGNVVKQFHAALQMG 46 (148)
T ss_dssp CEESTTSHHHHHHHHHHHHHHHT
T ss_pred eecCcHHHHHHHHHHHHHHHHhC
Confidence 44556677888899999988865
No 40
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=30.22 E-value=24 Score=21.11 Aligned_cols=61 Identities=16% Similarity=0.341 Sum_probs=39.9
Q ss_pred hhHHHHhhhHHHHhhhhhcchhHHhhcchHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhCC
Q psy16402 4 TTADALDSLLDDYLQGLNQSLSRAILCNDTLVKKMEELENTEQMYK-------GLVEHCKKVLKGFLGILRVYKGCLAGG 76 (77)
Q Consensus 4 ~TADAL~~~~~~~~~~~~~GLSRAILCND~LvkkleeLe~t~~~Yk-------gLv~h~k~~Lk~~~~l~~~~k~f~~~~ 76 (77)
+..||+ .|+..+ ++-..+++ .+-++.-+..+.|+ +.++..+.+++++-+++.-+..||.-|
T Consensus 3 ~~~dA~-----~yl~~V-----K~~F~~~p--~~Y~~FL~im~~~k~~~~~~~~v~~rv~~Lf~~hpdLi~gFn~FLP~~ 70 (77)
T 2czy_A 3 HVEDAL-----TYLDQV-----KIRFGSDP--ATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNAFLPLG 70 (77)
T ss_dssp SHHHHH-----HHHHHH-----HHHTTTCH--HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTTTCHHHHHHHHTTSCSS
T ss_pred CHHHHH-----HHHHHH-----HHHHccCh--HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHCCCC
Confidence 456777 455433 23344442 33444444444444 888999999999999999999998754
No 41
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=30.04 E-value=35 Score=20.04 Aligned_cols=14 Identities=43% Similarity=0.544 Sum_probs=7.8
Q ss_pred chhHHhhcchHHHHHHHHH
Q psy16402 23 SLSRAILCNDTLVKKMEEL 41 (77)
Q Consensus 23 GLSRAILCND~LvkkleeL 41 (77)
|+||. +|-+||.++
T Consensus 75 GIsr~-----tL~rklkk~ 88 (91)
T 1ntc_A 75 GWGAA-----TLTAKLKEL 88 (91)
T ss_dssp TCCHH-----HHHHHHHHH
T ss_pred CcCHH-----HHHHHHHHh
Confidence 67765 445555543
No 42
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=29.56 E-value=26 Score=20.03 Aligned_cols=31 Identities=16% Similarity=0.364 Sum_probs=17.6
Q ss_pred HHHHhhhhhcchhHHhhcchHHHHHHHHHHH
Q psy16402 13 LDDYLQGLNQSLSRAILCNDTLVKKMEELEN 43 (77)
Q Consensus 13 ~~~~~~~~~~GLSRAILCND~LvkkleeLe~ 43 (77)
.|+||.-+.+-+-+.+-=|..|-+++++|++
T Consensus 25 VD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 25 VNEFLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556655555666666666777777666654
No 43
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=29.43 E-value=55 Score=18.90 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=15.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q psy16402 31 NDTLVKKMEELENTEQMYKGLVE 53 (77)
Q Consensus 31 ND~LvkkleeLe~t~~~YkgLv~ 53 (77)
|+.|-.+++.|++--...+.|+.
T Consensus 39 N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 39 NEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 67777777777776666666653
No 44
>1oh0_A Steroid delta-isomerase; ketosteroid isomerase, KSI, equilenin, PI, LBHB; HET: EQU; 1.1A {Pseudomonas putida} SCOP: d.17.4.3 PDB: 1e3v_A* 1opy_A 1dmq_A 1dmm_A 1ea2_A 3cpo_A 1e3r_A* 1ogx_A 2inx_A 2pzv_A 1c7h_A 1dmn_A 1k41_A 1oho_A* 3fzw_A* 1cqs_A* 1w00_A 1e97_A 1w6y_A* 3ipt_A* ...
Probab=29.12 E-value=28 Score=19.64 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=17.4
Q ss_pred CcchhHHHHhhhHHHHhhhhhcchh
Q psy16402 1 MSTTTADALDSLLDDYLQGLNQSLS 25 (77)
Q Consensus 1 Mss~TADAL~~~~~~~~~~~~~GLS 25 (77)
|...+..+...+++.|.+.+|+|=.
T Consensus 1 m~~~~~~~~~~~v~~~~~a~~~~D~ 25 (131)
T 1oh0_A 1 MNLPTAQEVQGLMARYIELVDVGDI 25 (131)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHTCH
T ss_pred CCcCCHHHHHHHHHHHHHHHhCCCH
Confidence 5555566777889999999988743
No 45
>3dmc_A NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, unknow function; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.17.4.10
Probab=28.83 E-value=23 Score=21.52 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=15.1
Q ss_pred CcchhHHHHh---hhHHHHhhhhhcc
Q psy16402 1 MSTTTADALD---SLLDDYLQGLNQS 23 (77)
Q Consensus 1 Mss~TADAL~---~~~~~~~~~~~~G 23 (77)
|++.|..++. .+++.|+++++.|
T Consensus 3 ~~~~~~~~~~~~~~~~~~f~~A~~~g 28 (134)
T 3dmc_A 3 MTHYSDNTLKVAHQGFEFFTQGLATG 28 (134)
T ss_dssp BCCTTCHHHHHHHHHHHHHHHHHHHS
T ss_pred cCcCCHHHHHHHHHHHHHHHHHHHcC
Confidence 4555555554 3778888888766
No 46
>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase; 2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A
Probab=27.88 E-value=1.2e+02 Score=19.46 Aligned_cols=32 Identities=9% Similarity=0.122 Sum_probs=26.5
Q ss_pred CcchhHHHHhhhHHHHhhhhhcchhHHhhcch
Q psy16402 1 MSTTTADALDSLLDDYLQGLNQSLSRAILCND 32 (77)
Q Consensus 1 Mss~TADAL~~~~~~~~~~~~~GLSRAILCND 32 (77)
|++.+.++|...+.+-++..++=++-|..||.
T Consensus 7 ~~~~v~~~LN~~la~El~a~~~Yl~~a~~~~~ 38 (189)
T 3oj5_A 7 PKTKFHALMQEQIHNEFTAAQQYVAIAVYFDS 38 (189)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 56778999999999988888888888888874
No 47
>3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus}
Probab=27.70 E-value=8.3 Score=29.20 Aligned_cols=18 Identities=22% Similarity=0.438 Sum_probs=16.5
Q ss_pred chhHHhhcchHHHHHHHH
Q psy16402 23 SLSRAILCNDTLVKKMEE 40 (77)
Q Consensus 23 GLSRAILCND~Lvkklee 40 (77)
++.|+.+.|..+++|+.+
T Consensus 344 aiGR~~IanPdlv~ki~~ 361 (419)
T 3l5a_A 344 GMSSPFVTEPDFVHKLAE 361 (419)
T ss_dssp EESTHHHHCTTHHHHHHT
T ss_pred HHHHHHHHCcHHHHHHHc
Confidence 899999999999999865
No 48
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.64 E-value=1.2e+02 Score=19.26 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16402 47 MYKGLVEHCKKVLKGFLGILRVYK 70 (77)
Q Consensus 47 ~YkgLv~h~k~~Lk~~~~l~~~~k 70 (77)
....|+...+.+|+.|..+.+.+.
T Consensus 92 q~~KL~~dF~~~L~~FQ~~Qr~~a 115 (130)
T 2dnx_A 92 QKERLMNDFSAALNNFQAVQRRVS 115 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888889999888877653
No 49
>1usu_A Heat shock protein HSP82; chaperone/complex, chaperone, activator, HSP90; 2.15A {Saccharomyces cerevisiae} SCOP: d.14.1.8 PDB: 1usv_A
Probab=27.57 E-value=72 Score=23.39 Aligned_cols=18 Identities=28% Similarity=0.536 Sum_probs=9.5
Q ss_pred chhHHhhcchHHHHHHHH
Q psy16402 23 SLSRAILCNDTLVKKMEE 40 (77)
Q Consensus 23 GLSRAILCND~Lvkklee 40 (77)
-+||-+|=+|.++|++..
T Consensus 107 NvSRE~LQ~~~~lk~I~~ 124 (260)
T 1usu_A 107 NLSREMLQQNKIMKVIRK 124 (260)
T ss_dssp CC------CCHHHHHHHH
T ss_pred ccCHHHhcccHHHHHHHH
Confidence 579999999999988753
No 50
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=27.55 E-value=1.4e+02 Score=20.03 Aligned_cols=35 Identities=6% Similarity=0.004 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16402 39 EELENTEQMYKGLVEHCKKVLKGFLGILRVYKGCL 73 (77)
Q Consensus 39 eeLe~t~~~YkgLv~h~k~~Lk~~~~l~~~~k~f~ 73 (77)
++++.++.--+.++..++++..+.-...++...|.
T Consensus 28 ~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~ 62 (265)
T 2q12_A 28 EDATAISNYMNQLYQAMHRIYDAQNELSAATHLTS 62 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666667777777777766666665555554
No 51
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=27.33 E-value=7.8 Score=26.99 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=25.9
Q ss_pred HHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16402 26 RAILCNDTLVKKMEELENTEQMYKGLVEHCKKVLK 60 (77)
Q Consensus 26 RAILCND~LvkkleeLe~t~~~YkgLv~h~k~~Lk 60 (77)
-.|+||.+.-.++.+-+.....|+.+.+.++++|+
T Consensus 274 D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~Lk 308 (354)
T 3tma_A 274 DRILANPPHGLRLGRKEGLFHLYWDFLRGALALLP 308 (354)
T ss_dssp SEEEECCCSCC----CHHHHHHHHHHHHHHHHTSC
T ss_pred CEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcC
Confidence 47999999888887777888899999888888764
No 52
>3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A*
Probab=26.91 E-value=12 Score=28.61 Aligned_cols=18 Identities=33% Similarity=0.436 Sum_probs=16.3
Q ss_pred chhHHhhcchHHHHHHHH
Q psy16402 23 SLSRAILCNDTLVKKMEE 40 (77)
Q Consensus 23 GLSRAILCND~Lvkklee 40 (77)
++.|+.+.|..|++|+.+
T Consensus 344 a~GR~~iaNPdL~~ri~~ 361 (407)
T 3tjl_A 344 GFSRYFTSNPNLVWKLRD 361 (407)
T ss_dssp ECSHHHHHCTTHHHHHHH
T ss_pred EeChhhhhCchHHHHHHc
Confidence 889999999999999864
No 53
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=26.74 E-value=22 Score=25.97 Aligned_cols=32 Identities=25% Similarity=0.383 Sum_probs=26.5
Q ss_pred HHhhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16402 26 RAILCNDTLVKKMEELENTEQMYKGLVEHCKK 57 (77)
Q Consensus 26 RAILCND~LvkkleeLe~t~~~YkgLv~h~k~ 57 (77)
=.|+||.+-.+|+.+-+..+.+|+.+-+..+.
T Consensus 303 D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~ 334 (385)
T 3ldu_A 303 GFIITNPPYGERLEDKDSVKQLYKELGYAFRK 334 (385)
T ss_dssp CEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT
T ss_pred cEEEECCCCcCccCCHHHHHHHHHHHHHHHhh
Confidence 36999999999999888888999987666654
No 54
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=26.65 E-value=22 Score=22.87 Aligned_cols=20 Identities=25% Similarity=0.312 Sum_probs=0.0
Q ss_pred hhcchHHHHHHHHHHHHHHH
Q psy16402 28 ILCNDTLVKKMEELENTEQM 47 (77)
Q Consensus 28 ILCND~LvkkleeLe~t~~~ 47 (77)
-.-|..|..|+++||.-+++
T Consensus 97 ~~~n~~L~~riqeLE~~a~~ 116 (118)
T 4ati_A 97 EHANRHLLLRVQELEMQARA 116 (118)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34578888888888876654
No 55
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli, hydrolase; 1.90A {Escherichia coli}
Probab=26.42 E-value=1.2e+02 Score=22.76 Aligned_cols=18 Identities=28% Similarity=0.553 Sum_probs=15.4
Q ss_pred chhHHhhcchHHHHHHHH
Q psy16402 23 SLSRAILCNDTLVKKMEE 40 (77)
Q Consensus 23 GLSRAILCND~Lvkklee 40 (77)
-+||-+|=+|.++|++.+
T Consensus 105 NvSRE~LQ~~~~lk~Irk 122 (303)
T 2gq0_A 105 NVSREILQDSTVTRNLRN 122 (303)
T ss_dssp TCCHHHHHHCHHHHHHHH
T ss_pred ccchHhhcccHHHHHHHH
Confidence 579999999999988763
No 56
>3cu3_A Domain of unknown function with A cystatin-like F; structural genomics, joint center for structural genomics, J protein structure initiative; 2.00A {Nostoc punctiforme} SCOP: d.17.4.28
Probab=26.34 E-value=32 Score=21.16 Aligned_cols=19 Identities=11% Similarity=0.256 Sum_probs=14.7
Q ss_pred HHHhhhHHHHhhhhhcchh
Q psy16402 7 DALDSLLDDYLQGLNQSLS 25 (77)
Q Consensus 7 DAL~~~~~~~~~~~~~GLS 25 (77)
.++..+++.|.+++|.|=.
T Consensus 16 ~aI~~~~~~~~~A~~~~D~ 34 (172)
T 3cu3_A 16 SAIRAFHRQMIDAWNRGSG 34 (172)
T ss_dssp HHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCCH
Confidence 4677889999999887643
No 57
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*
Probab=26.32 E-value=6.1 Score=29.08 Aligned_cols=17 Identities=29% Similarity=0.274 Sum_probs=16.0
Q ss_pred chhHHhhcchHHHHHHH
Q psy16402 23 SLSRAILCNDTLVKKME 39 (77)
Q Consensus 23 GLSRAILCND~Lvkkle 39 (77)
++.|+.+.|..+++|+.
T Consensus 305 ~iGR~~lanPdl~~k~~ 321 (343)
T 3kru_A 305 ALGRELLRNPYWVLHTY 321 (343)
T ss_dssp EESHHHHHCTTHHHHTC
T ss_pred HHHHHHhcCCeEEEEEe
Confidence 79999999999999987
No 58
>2cmr_A GP41, transmembrane glycoprotein; immune system, immunoglobulin complex, neutralization, immunoglobulin, envelope protein, HIV; 2.0A {Human immunodeficiency virus 1} PDB: 2xra_A 3cp1_A 3cyo_A
Probab=25.67 E-value=57 Score=24.16 Aligned_cols=40 Identities=28% Similarity=0.473 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhhCC
Q psy16402 37 KMEELENTEQMYKGLVEHCKKVLKGF-----------LGILRVYKGCLAGG 76 (77)
Q Consensus 37 kleeLe~t~~~YkgLv~h~k~~Lk~~-----------~~l~~~~k~f~~~~ 76 (77)
.|-+|.+-..++.|+|..-..+|++. .+|.+....++|||
T Consensus 169 eLL~Ld~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (226)
T 2cmr_A 169 ELLEGSSGGQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAGG 219 (226)
T ss_dssp HHHCC---TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCC
Confidence 34444455568889999888888875 35667778888988
No 59
>1y6z_A Heat shock protein, putative; chaperone, structural genomics, structural genom consortium, SGC, unknown function; 1.88A {Plasmodium falciparum}
Probab=25.26 E-value=80 Score=22.95 Aligned_cols=17 Identities=18% Similarity=0.409 Sum_probs=6.4
Q ss_pred chhHHhhcchHHHHHHH
Q psy16402 23 SLSRAILCNDTLVKKME 39 (77)
Q Consensus 23 GLSRAILCND~Lvkkle 39 (77)
-+||-+|=+|.+++++.
T Consensus 109 NvSRE~LQ~~~~l~~Ir 125 (263)
T 1y6z_A 109 NVGREILQKSKMLSIIN 125 (263)
T ss_dssp ---------CTTHHHHH
T ss_pred ccchhhhcccHHHHHHH
Confidence 57999999999888765
No 60
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=24.47 E-value=8.5 Score=30.08 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=16.4
Q ss_pred chhHHhhcchHHHHHHHH
Q psy16402 23 SLSRAILCNDTLVKKMEE 40 (77)
Q Consensus 23 GLSRAILCND~Lvkklee 40 (77)
++.|+.+.|..+++|+.+
T Consensus 319 ~~gR~~l~~P~~~~~~~~ 336 (729)
T 1o94_A 319 GCARPSIADPFLPQKVEQ 336 (729)
T ss_dssp EESHHHHHCTTHHHHHHT
T ss_pred EeCchhhcCchHHHHHHc
Confidence 799999999999999875
No 61
>1z23_A CRK-associated substrate; four-helix bundle, cell adhesion; NMR {Rattus norvegicus}
Probab=24.37 E-value=1.8e+02 Score=20.22 Aligned_cols=48 Identities=25% Similarity=0.475 Sum_probs=32.9
Q ss_pred HHHHhhhHHHHhhhhhcchhHHhhcc------hHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q psy16402 6 ADALDSLLDDYLQGLNQSLSRAILCN------DTLVKKM-EELENTEQMYKGLVEHCKKV 58 (77)
Q Consensus 6 ADAL~~~~~~~~~~~~~GLSRAILCN------D~Lvkkl-eeLe~t~~~YkgLv~h~k~~ 58 (77)
++.+..-+.+||. .-|.++.| -.|..|| .+|...+..|+.|++|...+
T Consensus 61 ~~~v~~Sl~efL~-----Farga~~nA~~~~d~~L~~kl~r~Lq~l~ds~qiL~~~~~~L 115 (163)
T 1z23_A 61 VAAVHGAVHELLE-----FARSAVSSATHTSDRTLHAKLSRQLQKMEDVYQTLVVHGQVL 115 (163)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHTTCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----HHHHHHhhccccccchHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4444455566663 45666666 3577888 77888888999999886554
No 62
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=23.84 E-value=1.4e+02 Score=18.73 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16402 34 LVKKMEELENTEQMYKGLVEHCKKVLKG 61 (77)
Q Consensus 34 LvkkleeLe~t~~~YkgLv~h~k~~Lk~ 61 (77)
..+..++.|.--+.||.-|+.+.+.|.+
T Consensus 10 F~~lv~~fe~rL~~Yr~~IeelE~~L~s 37 (93)
T 3t98_B 10 FRVLVQQFEVQLQQYRQQIEELENHLAT 37 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777888888888888888877665
No 63
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=23.65 E-value=38 Score=20.90 Aligned_cols=13 Identities=38% Similarity=0.652 Sum_probs=7.7
Q ss_pred chhHHhhcchHHHHHHHH
Q psy16402 23 SLSRAILCNDTLVKKMEE 40 (77)
Q Consensus 23 GLSRAILCND~Lvkklee 40 (77)
|+||. +|.+||.+
T Consensus 82 GIsR~-----TL~rkLkk 94 (98)
T 1eto_A 82 GINRG-----TLRKKLKK 94 (98)
T ss_dssp TSCHH-----HHHHHHHH
T ss_pred CCCHH-----HHHHHHHH
Confidence 77775 44556554
No 64
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=23.47 E-value=7.7 Score=29.67 Aligned_cols=18 Identities=28% Similarity=0.532 Sum_probs=16.1
Q ss_pred chhHHhhcchHHHHHHHH
Q psy16402 23 SLSRAILCNDTLVKKMEE 40 (77)
Q Consensus 23 GLSRAILCND~Lvkklee 40 (77)
++.|+++.|..+++|+.+
T Consensus 308 ~~gR~~l~~P~l~~k~~~ 325 (671)
T 1ps9_A 308 SMARPFLADAELLSKAQS 325 (671)
T ss_dssp EESTHHHHCTTHHHHHHT
T ss_pred EeCHHHHhCcHHHHHHHc
Confidence 689999999999999864
No 65
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=22.51 E-value=1.8e+02 Score=19.45 Aligned_cols=34 Identities=15% Similarity=0.097 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16402 32 DTLVKKMEELENTEQMYKGLVEHCKKVLKGFLGI 65 (77)
Q Consensus 32 D~LvkkleeLe~t~~~YkgLv~h~k~~Lk~~~~l 65 (77)
+.+.+.+.++-+..+.++.+.+.+++..+..|..
T Consensus 367 ~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~ 400 (416)
T 2x6q_A 367 NEAVEVVLYLLKHPEVSKEMGAKAKERVRKNFII 400 (416)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTBH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCH
Confidence 5678888888777777888877777766544433
No 66
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=22.49 E-value=2e+02 Score=19.95 Aligned_cols=57 Identities=14% Similarity=0.141 Sum_probs=31.7
Q ss_pred HHHHhhhhhcchhHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16402 13 LDDYLQGLNQSLSRAILCNDTLVKKMEELENTEQMYKGLVEHCKKVLKGFLGILRVYK 70 (77)
Q Consensus 13 ~~~~~~~~~~GLSRAILCND~LvkkleeLe~t~~~YkgLv~h~k~~Lk~~~~l~~~~k 70 (77)
|+.|+..+++ +.-..---+.+...++++.+...-|..+...+...+..+-.+.+.|.
T Consensus 54 L~~~v~~l~~-~q~~~~~~e~l~s~ae~ll~l~~~Le~~r~~l~~~l~~~~~L~~~~~ 110 (192)
T 2p22_C 54 LELYVTKFNP-LTDFAGKIHAFRDQFKQLEENFEDLHEQKDKVQALLENARILESKYV 110 (192)
T ss_dssp HHHHGGGGSC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhchh-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445444432 22222223445666666666666677777777777666666555543
No 67
>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A, confirmed by transcript...; lipid transport; HET: CSX; 1.80A {Caenorhabditis elegans}
Probab=22.36 E-value=17 Score=25.03 Aligned_cols=39 Identities=13% Similarity=0.118 Sum_probs=28.6
Q ss_pred hHHhhcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16402 25 SRAILCN--DTLVKKMEELENTEQMYKGLVEHCKKVLKGFL 63 (77)
Q Consensus 25 SRAILCN--D~LvkkleeLe~t~~~YkgLv~h~k~~Lk~~~ 63 (77)
-|+|.|+ ++----+++|....++|++|-+.++.=|+.-|
T Consensus 95 ~r~l~~~~~~G~k~~~~~lK~~~~~ykaLS~~aK~dL~k~F 135 (140)
T 2w9y_A 95 VTTTLCSLTVGKPIDDADAKRLHQEFQSLSSEDQAALRKNN 135 (140)
T ss_dssp HHHHHHHHHHTCCCCTHHHHHHHHHHHTSCHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 4778888 44444456677778999999999998776543
No 68
>3en8_A Uncharacterized NTF-2 like protein; YP_553245.1, NTF-2 like protein of unknown function, structu genomics; HET: MSE PG4; 1.85A {Burkholderia xenovorans LB400} SCOP: d.17.4.20
Probab=21.92 E-value=36 Score=20.47 Aligned_cols=22 Identities=14% Similarity=-0.011 Sum_probs=14.2
Q ss_pred CcchhHHHHhhhHHHHhhhhhcchh
Q psy16402 1 MSTTTADALDSLLDDYLQGLNQSLS 25 (77)
Q Consensus 1 Mss~TADAL~~~~~~~~~~~~~GLS 25 (77)
||+.+.- .++..|++.+|+|=-
T Consensus 2 Ms~~~~~---~~v~~~~~a~~~~D~ 23 (128)
T 3en8_A 2 MREEKIR---EALNAHWQASAAGDF 23 (128)
T ss_dssp CHHHHHH---HHHHHHHHHHHHTCH
T ss_pred CCHHHHH---HHHHHHHHHHHcCCH
Confidence 5654433 458888888887633
No 69
>2l81_A Enhancer of filamentation 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, cell adhesion; NMR {Homo sapiens}
Probab=21.83 E-value=2.2e+02 Score=20.15 Aligned_cols=48 Identities=25% Similarity=0.414 Sum_probs=32.4
Q ss_pred HHHHhhhHHHHhhhhhcchhHHhhcc------hHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q psy16402 6 ADALDSLLDDYLQGLNQSLSRAILCN------DTLVKKM-EELENTEQMYKGLVEHCKKV 58 (77)
Q Consensus 6 ADAL~~~~~~~~~~~~~GLSRAILCN------D~Lvkkl-eeLe~t~~~YkgLv~h~k~~ 58 (77)
+|.+..-+.+||. ..|.++.| -.|..|| .+|...+..|+.|+++..++
T Consensus 65 ~~~v~~Sl~efL~-----FArga~~nA~~~~d~~L~~kl~rqLq~l~ds~qiL~~~~~~L 119 (176)
T 2l81_A 65 VDKVELFLKEYLH-----FVKGAVANAACLPELILHNKMKRELQRVEDSHQILSQTSHDL 119 (176)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHHHTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----HHHHHHhhccccccchHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4445555566663 34555555 3577888 67888899999999987655
No 70
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=21.46 E-value=1.1e+02 Score=20.03 Aligned_cols=29 Identities=14% Similarity=0.286 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16402 32 DTLVKKMEELENTEQMYKGLVEHCKKVLK 60 (77)
Q Consensus 32 D~LvkkleeLe~t~~~YkgLv~h~k~~Lk 60 (77)
+.+++.++++-+..+.++.+.+.+++..+
T Consensus 337 ~~l~~~i~~l~~~~~~~~~~~~~~~~~~~ 365 (406)
T 2gek_A 337 DGMAAALIGILEDDQLRAGYVARASERVH 365 (406)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 56888888887777778777777776654
No 71
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=21.10 E-value=1.9e+02 Score=19.17 Aligned_cols=29 Identities=10% Similarity=0.219 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16402 32 DTLVKKMEELENTEQMYKGLVEHCKKVLK 60 (77)
Q Consensus 32 D~LvkkleeLe~t~~~YkgLv~h~k~~Lk 60 (77)
+.+.+.+.++-+..+.++.+.+.+++..+
T Consensus 338 ~~la~~i~~l~~~~~~~~~~~~~~~~~~~ 366 (394)
T 2jjm_A 338 TGVADQAIQLLKDEELHRNMGERARESVY 366 (394)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 56788888877777777777777766553
No 72
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=20.91 E-value=2e+02 Score=19.28 Aligned_cols=30 Identities=7% Similarity=0.085 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16402 32 DTLVKKMEELENTEQMYKGLVEHCKKVLKG 61 (77)
Q Consensus 32 D~LvkkleeLe~t~~~YkgLv~h~k~~Lk~ 61 (77)
+.+.+.+.++-+..+.++.+.+.+++..+.
T Consensus 379 ~~la~~i~~l~~~~~~~~~~~~~~~~~~~~ 408 (438)
T 3c48_A 379 HAWADALATLLDDDETRIRMGEDAVEHART 408 (438)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 567888888777777777777777766655
No 73
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=20.88 E-value=61 Score=18.01 Aligned_cols=20 Identities=20% Similarity=0.524 Sum_probs=16.5
Q ss_pred chhHHHHhhhHHHHhhhhhc
Q psy16402 3 TTTADALDSLLDDYLQGLNQ 22 (77)
Q Consensus 3 s~TADAL~~~~~~~~~~~~~ 22 (77)
+.|++.++.++-+|++.+-+
T Consensus 21 ~ETv~llEeiV~~~i~~l~~ 40 (45)
T 1bh9_A 21 TESVDILEDLVIEFITEMTH 40 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999987643
No 74
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces cerevisiae} SCOP: d.14.1.8
Probab=20.23 E-value=99 Score=23.06 Aligned_cols=18 Identities=28% Similarity=0.536 Sum_probs=8.5
Q ss_pred chhHHhhcchHHHHHHHH
Q psy16402 23 SLSRAILCNDTLVKKMEE 40 (77)
Q Consensus 23 GLSRAILCND~Lvkklee 40 (77)
-+||-+|=+|.+++++..
T Consensus 105 NvSRE~LQ~~~~lk~I~k 122 (288)
T 1hk7_A 105 NLSREMLQQNKIMKVIRK 122 (288)
T ss_dssp C-------CCHHHHHHHH
T ss_pred cccHHHhccCHHHHHHHH
Confidence 579999999999987653
No 75
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=20.19 E-value=1.5e+02 Score=17.58 Aligned_cols=30 Identities=17% Similarity=0.212 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q psy16402 32 DTLVKKMEELEN-TEQMYKGLVEHCKKVLKG 61 (77)
Q Consensus 32 D~LvkkleeLe~-t~~~YkgLv~h~k~~Lk~ 61 (77)
+.+.+.++++-+ ..+.++.+.+.+++..+.
T Consensus 168 ~~l~~~i~~l~~~~~~~~~~~~~~a~~~~~~ 198 (200)
T 2bfw_A 168 GELANAILKALELSRSDLSKFRENCKKRAMS 198 (200)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 578888988888 888888888888776654
Done!