BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16403
(177 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YUY|A Chain A, Solution Structure Of Pdz Domain Of Rho Gtpase Activating
Protein 21
Length = 126
Score = 105 bits (263), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 75/117 (64%), Gaps = 10/117 (8%)
Query: 24 PRNLILRRSAALNGFGFTLRHFIVYPPESYTVLA------GDRRLGLRSRCMDEPMDTIF 77
P+ + L+R++ GFGFTLRHFIVYPPES + G+R G + R EPMDTIF
Sbjct: 9 PKTVTLKRTS--QGFGFTLRHFIVYPPESAIQFSYKDEENGNR--GGKQRNRLEPMDTIF 64
Query: 78 IKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134
+K V+ PA AGL GDR++ VN +++ Y++V+ LIQNS L L V+PK++
Sbjct: 65 VKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVMPKDS 121
>pdb|3R68|A Chain A, Molecular Analysis Of The Pdz3 Domain Of Pdzk1
Length = 95
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 27/110 (24%)
Query: 24 PRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRP 83
PR +++++ + NG+GF LR AG + G IK + P
Sbjct: 6 PRVVVIKKGS--NGYGFYLR-------------AGPEQKGQ------------IIKDIEP 38
Query: 84 HSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 133
SPA AAGL D VVAVN +++ L + VV++I+ LLV+ KE
Sbjct: 39 GSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKE 88
>pdb|1GQ4|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2ar And Pdgfr
Length = 90
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 77 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 136
+I+ V P SPA AGL+ GDR+V VN + + + +VV I+ + + LLVV END
Sbjct: 29 YIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPENDS 88
Query: 137 L 137
L
Sbjct: 89 L 89
>pdb|3R69|A Chain A, Molecular Analysis Of The Interaction Of The Hdl-Receptor
Sr-Bi With The Pdz3 Domain Of Its Adaptor Protein Pdzk1
pdb|3R69|B Chain B, Molecular Analysis Of The Interaction Of The Hdl-Receptor
Sr-Bi With The Pdz3 Domain Of Its Adaptor Protein Pdzk1
Length = 89
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 27/110 (24%)
Query: 24 PRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRP 83
PR +++++ + NG+GF LR AG + G IK + P
Sbjct: 3 PRVVVIKKGS--NGYGFYLR-------------AGPEQKGQ------------IIKDIEP 35
Query: 84 HSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 133
SPA AAGL D VVAVN +++ L + VV++I+ LLV+ K+
Sbjct: 36 GSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKQ 85
>pdb|2D90|A Chain A, Solution Structure Of The Third Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 102
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%)
Query: 77 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 133
IK + P SPA AAGL D VVAVN +++ L + VV++I+ LLV+ KE
Sbjct: 33 IIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKE 89
>pdb|2OCS|A Chain A, The Crystal Structure Of The First Pdz Domain Of Human
Nherf-2 (slc9a3r2)
Length = 88
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 77 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134
FI+ V P SPA AA L GDR+V VN + + +VVQ I+ LLVV +E+
Sbjct: 28 FIRRVEPGSPAEAAALRAGDRLVEVNGVNVEGETHHQVVQRIKAVEGQTRLLVVDQED 85
>pdb|1UEW|A Chain A, Solution Structure Of The Forth Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 114
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 18/98 (18%)
Query: 37 GFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAA-AAGLVPG 95
GFGF + + PES + + ++G R +D SPA A L G
Sbjct: 23 GFGFVIISSL-NRPESGSTITVPHKIG---RIID-------------GSPADRCAKLKVG 65
Query: 96 DRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 133
DR++AVN Q+I ++P+A++V+LI+++ + L ++P+E
Sbjct: 66 DRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQE 103
>pdb|1G9O|A Chain A, First Pdz Domain Of The Human Na+H+ EXCHANGER REGULATORY
Factor
Length = 91
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 77 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135
+I+ V P SPA AGL+ GDR+V VN + + + +VV I+ + + LLVV E D
Sbjct: 30 YIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETD 88
>pdb|1I92|A Chain A, Structural Basis Of The Nherf Pdz1-Cftr Interaction
Length = 91
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 77 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135
+I+ V P SPA AGL+ GDR+V VN + + + +VV I+ + + LLVV E D
Sbjct: 30 YIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPEQD 88
>pdb|2JXO|A Chain A, Structure Of The Second Pdz Domain Of Nherf-1
Length = 98
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%)
Query: 77 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135
FI+ V P SPA A+GL DR+V VN + + +VV I+ LLVV +E D
Sbjct: 36 FIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETD 94
>pdb|2EEJ|A Chain A, Solution Structure Of Fourth Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 96
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 48/117 (41%), Gaps = 27/117 (23%)
Query: 18 SSQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIF 77
SS GP+ + R + NG+GF L P F
Sbjct: 2 SSGSSGPK--LCRLAKGENGYGFHLNAIRGLPGS-------------------------F 34
Query: 78 IKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134
IK V+ PA AGL D ++ VN + D PY +VV IQ+S + LLV K++
Sbjct: 35 IKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCGKKS 91
>pdb|1GQ5|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2- Ar And Pdgfr
Length = 91
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 77 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135
+I+ V P SPA AGL+ GDR+V VN + + + +VV I+ + + LLVV E D
Sbjct: 30 YIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPEED 88
>pdb|1X5N|A Chain A, Solution Structure Of The Second Pdz Domain Of Harmonin
Protein
Length = 114
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 53 YTVLAGDRRLG--LRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLP 110
+ L G R LG + S + +P IFI HV+P S +A GL GD++V VN ++L
Sbjct: 20 FISLVGSRGLGCSISSGPIQKP--GIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLD 77
Query: 111 YAEVVQLIQNSPAYLHLLVVPKENDLL 137
+ E V ++++S + +V +L
Sbjct: 78 HKEAVNVLKSSRSLTISIVAAAGRELF 104
>pdb|2KRG|A Chain A, Solution Structure Of Human Sodium HYDROGEN EXCHANGE
Regulatory Factor 1(150-358)
Length = 216
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%)
Query: 77 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135
FI+ V P SPA A+GL DR+V VN + + +VV I+ LLVV +E D
Sbjct: 36 FIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETD 94
>pdb|2V90|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|C Chain C, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|D Chain D, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|E Chain E, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|F Chain F, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
Length = 96
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 77 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135
F+ V P PA AG+ GDR+VAV +++ L + E V IQ + + L VV E D
Sbjct: 33 FLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQGQGSCVSLTVVDPEAD 91
>pdb|1UF1|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Kiaa1526 Protein
Length = 128
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 55 VLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEV 114
VL R LGL R E I+I V P S A +GL GD+++ VN ++ ++ + E
Sbjct: 27 VLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEA 86
Query: 115 VQLIQNSPAYLHLLVVPKE 133
V+L+++S HL++ K+
Sbjct: 87 VRLLKSSR---HLILTVKD 102
>pdb|2KJD|A Chain A, Solution Structure Of Extended Pdz2 Domain From Nherf1
(150- 270)
Length = 128
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%)
Query: 77 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135
FI+ V P SPA A+GL DR+V VN + + +VV I+ LLVV +E D
Sbjct: 36 FIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETD 94
>pdb|2KBS|A Chain A, Solution Structure Of Harmonin Pdz2 In Complex With The
Carboxyl Tail Peptide Of Cadherin23
Length = 92
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 53 YTVLAGDRRLG--LRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLP 110
+ L G R LG + S + +P IFI HV+P S +A GL GD++V VN ++L
Sbjct: 6 FISLVGSRGLGCSISSGPIQKP--GIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLD 63
Query: 111 YAEVVQLIQNS 121
+ E V ++++S
Sbjct: 64 HKEAVNVLKSS 74
>pdb|2VSP|A Chain A, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|B Chain B, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|C Chain C, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|D Chain D, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
Length = 91
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%)
Query: 77 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 133
FIK V+ PA AGL D ++ VN + D PY +VV IQ+S + LLV K+
Sbjct: 30 FIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCGKK 86
>pdb|3TMH|A Chain A, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
pdb|3TMH|E Chain E, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
pdb|3TMH|I Chain I, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
Length = 87
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%)
Query: 77 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 133
FIK V+ PA AGL D ++ VN + D PY +VV IQ+S + LLV K+
Sbjct: 30 FIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCGKK 86
>pdb|2HE4|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Nherf-2 (Slc9a3r2) Interacting With A Mode 1 Pdz Binding
Motif
Length = 90
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 32/54 (59%)
Query: 77 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 130
+I+ V P SPAA +GL DR++ VN Q + L +AEVV I+ LLVV
Sbjct: 31 YIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 84
>pdb|2IWQ|A Chain A, 7th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
Length = 123
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 49 PPESYTV-LAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTI 106
P +S + + G R +G R E M IFIKHV SPA G L PGDR+V V+ +
Sbjct: 34 PSKSLGISIVGGRGMGSR-LSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDL 92
Query: 107 ADLPYAEVVQLIQNS 121
D + + V+ I+ +
Sbjct: 93 RDASHEQAVEAIRKA 107
>pdb|2FCF|A Chain A, The Crystal Structure Of The 7th Pdz Domain Of Mpdz
(Mupp-1)
Length = 103
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 49 PPESYTV-LAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTI 106
P +S + + G R +G R E M IFIKHV SPA G L PGDR+V V+ +
Sbjct: 14 PSKSLGISIVGGRGMGSR-LSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDL 72
Query: 107 ADLPYAEVVQLIQNS 121
D + + V+ I+ +
Sbjct: 73 RDASHEQAVEAIRKA 87
>pdb|2OZF|A Chain A, The Crystal Structure Of The 2nd Pdz Domain Of The Human
Nherf-1 (Slc9a3r1)
Length = 92
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 77 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135
FI+ V P SPA A+GL DR+V VN + + +VV I+ LLVV +E +
Sbjct: 31 FIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETE 89
>pdb|3NGH|A Chain A, Molecular Analysis Of The Interaction Of The Hdl Receptor
Sr-Bi With The Adaptor Protein Pdzk1
pdb|3NGH|B Chain B, Molecular Analysis Of The Interaction Of The Hdl Receptor
Sr-Bi With The Adaptor Protein Pdzk1
Length = 106
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%)
Query: 69 MDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 128
+++ D I+ + SPA AGL+ GDRV+ +N + +A+VV+L++ S + LL
Sbjct: 21 IEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLL 80
Query: 129 VV 130
V+
Sbjct: 81 VL 82
>pdb|4F8K|A Chain A, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
pdb|4F8K|B Chain B, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
Length = 109
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 39/66 (59%)
Query: 69 MDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 128
+++ D I+ + SPA AGL+ GDRV+ +N + +A+VV+L++ S + LL
Sbjct: 22 IEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLL 81
Query: 129 VVPKEN 134
V+ ++
Sbjct: 82 VLDGDS 87
>pdb|2DLS|A Chain A, Solution Structure Of The Pdz Domain Of Human Rho Guanine
Nucleotide Exchange Factor 11
Length = 93
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 29/92 (31%)
Query: 36 NGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPG 95
+GFGFT+ +GDR + ++ VRP A AG+ G
Sbjct: 19 HGFGFTV--------------SGDR--------------IVLVQSVRPGGAAMKAGVKEG 50
Query: 96 DRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 127
DR++ VN + + + EVV+LI+ S AY+ L
Sbjct: 51 DRIIKVNGTMVTNSSHLEVVKLIK-SGAYVAL 81
>pdb|2EDZ|A Chain A, Solution Structures Of The Pdz Domain Of Mus Musculus Pdz
Domain-Containing Protein 1
Length = 114
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 39/66 (59%)
Query: 69 MDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 128
+++ D I+ + SPA AGL+ GDRV+ +N + +A+VV+L++ S + LL
Sbjct: 33 IEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLL 92
Query: 129 VVPKEN 134
V+ ++
Sbjct: 93 VLDGDS 98
>pdb|2EEI|A Chain A, Solution Structure Of Second Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 106
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 34/60 (56%)
Query: 76 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135
+++ + P A AG++ D ++ VN + + D + EVV+ ++ S + + L+V KE D
Sbjct: 34 VYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKKSGSRVMFLLVDKETD 93
>pdb|2EGK|A Chain A, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|B Chain B, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|C Chain C, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|D Chain D, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
Length = 101
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%)
Query: 63 GLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP 122
GL R F+ V SPA AGL PGD + +VN + + + E+V +I+ S
Sbjct: 26 GLHHREEQRVEXVTFVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKASG 85
Query: 123 AYLHL 127
L L
Sbjct: 86 NVLRL 90
>pdb|2KQF|A Chain A, Solution Structure Of Mast205-Pdz Complexed With The
C-Terminus Of A Rabies Virus G Protein
pdb|2KYL|A Chain A, Solution Structure Of Mast2-Pdz Complexed With The
C-Terminus Of Pten
Length = 96
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 48/110 (43%), Gaps = 23/110 (20%)
Query: 27 LILRRSAALNGFGFTLRHFIVYPPES--YTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPH 84
+I+ R+ +GFTLR VY +S YTV + HV
Sbjct: 8 IIIHRAG--KKYGFTLRAIRVYMGDSDVYTVHH-------------------MVWHVEDG 46
Query: 85 SPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134
PA+ AGL GD + VN + + L + EVV+LI S + + P EN
Sbjct: 47 GPASEAGLRQGDLITHVNGEPVHGLVHTEVVELILKSGNKVAISTTPLEN 96
>pdb|2EGO|A Chain A, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGO|B Chain B, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGN|A Chain A, Crystal Structure Of Tamalin Pdz Domain In Complex With
Mglur5 C-Terminal Peptide
Length = 96
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%)
Query: 63 GLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP 122
GL R F+ V SPA AGL PGD + +VN + + + E+V +I+ S
Sbjct: 26 GLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKASG 85
Query: 123 AYLHL 127
L L
Sbjct: 86 NVLRL 90
>pdb|2PNT|A Chain A, Crystal Structure Of The Pdz Domain Of Human Grasp (Grp1)
In Complex With The C-Terminal Peptide Of The
Metabotropic Glutamate Receptor Type 1
pdb|2PNT|B Chain B, Crystal Structure Of The Pdz Domain Of Human Grasp (Grp1)
In Complex With The C-Terminal Peptide Of The
Metabotropic Glutamate Receptor Type 1
Length = 98
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 77 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 127
F+ V SPA AGL PGD + +VN + + + E+V +I+ S L L
Sbjct: 40 FVCRVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRL 90
>pdb|2EEH|A Chain A, Solution Structure Of First Pdz Domain Of Pdz Domain
Containing Protein 7
Length = 100
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 61 RLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN 120
RLG R E IF+ V S A AGL GD++ VN ++ V+++ +
Sbjct: 23 RLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGSAVKVLTS 82
Query: 121 SPAYLHLLV 129
S + LH++V
Sbjct: 83 S-SRLHMMV 90
>pdb|1WI2|A Chain A, Solution Structure Of The Pdz Domain From Riken Cdna
2700099c19
Length = 104
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 61 RLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN 120
+LG R IFI V P S A AGL GD+V+AVN+ D+ +++ V++++
Sbjct: 28 QLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKT 87
Query: 121 S 121
+
Sbjct: 88 A 88
>pdb|2DAZ|A Chain A, Solution Structure Of The 7th Pdz Domain Of Inad-Like
Protein
Length = 124
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 75 TIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 133
+IF+ + P PAAA G + GD ++ +NNQ + + +I+ +P+ + L+ + E
Sbjct: 52 SIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLVFIRNE 111
Query: 134 NDLLQLYFG 142
+ + Q+ G
Sbjct: 112 DAVNQMASG 120
>pdb|1UEZ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Kiaa1526 Protein
Length = 101
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 62 LGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS 121
LG R E I++ V P S A GL GD+++ VN++++A + +AE V+ ++ S
Sbjct: 23 LGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKGS 82
Query: 122 P 122
Sbjct: 83 K 83
>pdb|2W7R|A Chain A, Structure Of The Pdz Domain Of Human Microtubule
Associated Serine-Threonine Kinase 4
pdb|2W7R|B Chain B, Structure Of The Pdz Domain Of Human Microtubule
Associated Serine-Threonine Kinase 4
Length = 98
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 22/109 (20%)
Query: 28 ILRRSAALNGFGFTLRHFIVYPPES--YTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHS 85
I+ S+ N +GFT+R VY +S YTV + +V S
Sbjct: 5 IVIHSSGKN-YGFTIRAIRVYVGDSDIYTVHH-------------------IVWNVEEGS 44
Query: 86 PAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134
PA AGL GD + +N + + L + EV++L+ S + + P EN
Sbjct: 45 PACQAGLKAGDLITHINGEPVHGLVHTEVIELLLKSGNKVSITTTPFEN 93
>pdb|2OMJ|A Chain A, Solution Structure Of Larg Pdz Domain
pdb|2OS6|A Chain A, Solution Structure Of Larg Pdz Domain In Complex With C-
Terminal Octa-Peptide Of Plexin B1
Length = 89
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 13/80 (16%)
Query: 62 LGLRSRCMDEPMDT------------IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADL 109
+GL RC+ D +F++ V+ A AG+ GDR++ VN +
Sbjct: 4 MGLVQRCVIIQKDDNGFGLTVSGDNPVFVQSVKEDGAAMRAGVQTGDRIIKVNGTLVTHS 63
Query: 110 PYAEVVQLIQNSPAYLHLLV 129
+ EVV+LI+ S +Y+ L V
Sbjct: 64 NHLEVVKLIK-SGSYVALTV 82
>pdb|1M5Z|A Chain A, The Pdz7 Of Glutamate Receptor Interacting Protein Binds
To Its Target Via A Novel Hydrophobic Surface Area
Length = 91
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 76 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
+++K++RP P GL P DR++ VN+ D VV LI S L L++
Sbjct: 34 VYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVI 87
>pdb|1MFG|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
pdb|1MFL|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
Length = 95
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 74 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 130
D IF+ V+P PA+ L PGD+++ N + ++ + + V L++ + L++V
Sbjct: 35 DGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIV 90
>pdb|3PS4|A Chain A, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|B Chain B, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|C Chain C, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|D Chain D, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
Length = 102
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 21/99 (21%)
Query: 38 FGFTLRHFIVYPPES--YTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPG 95
+GFTLR VY ++ Y+V + HV PA AGL G
Sbjct: 18 YGFTLRAIRVYMGDTDVYSVHH-------------------IVWHVEEGGPAQEAGLCAG 58
Query: 96 DRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134
D + VN + + + + EVV+LI S + + P EN
Sbjct: 59 DLITHVNGEPVHGMVHPEVVELILKSGNKVAVTTTPFEN 97
>pdb|2H3L|A Chain A, Crystal Structure Of Erbin Pdz
pdb|2H3L|B Chain B, Crystal Structure Of Erbin Pdz
pdb|1N7T|A Chain A, Erbin Pdz Domain Bound To A Phage-Derived Peptide
Length = 103
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 74 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 130
D IF+ V+P PA+ L PGD+++ N + ++ + + V L++ + L++V
Sbjct: 43 DGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIV 98
>pdb|1N7E|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1
pdb|1N7F|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
pdb|1N7F|B Chain B, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
Length = 97
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 62 LGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQN 120
LG+ +EP D I I + A G + GDR++A+N+ ++ P +E + L+Q
Sbjct: 18 LGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQM 77
Query: 121 SPAYLHLLVVPKEND 135
+ + L + K+ D
Sbjct: 78 AGETVT-LKIKKQTD 91
>pdb|3CH8|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 74 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 130
D IF+ V+P PA+ L PGD+++ N + ++ + + V L++ + L++V
Sbjct: 25 DGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIV 80
>pdb|1OBZ|A Chain A, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1OBZ|B Chain B, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1V1T|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1V1T|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1YBO|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin With
Syndecan Peptide
pdb|1YBO|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin With
Syndecan Peptide
pdb|1W9E|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9E|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9O|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9O|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9Q|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
pdb|1W9Q|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
Length = 166
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 59 DRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIA 107
D ++GLR + +D + IF++ V+ +SPA+ GL GD+V+ +N + A
Sbjct: 15 DGKIGLRLKSID---NGIFVQLVQANSPASLVGLRFGDQVLQINGENCA 60
>pdb|1N99|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin
pdb|1N99|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin
Length = 166
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 59 DRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIA 107
D ++GLR + +D + IF++ V+ +SPA+ GL GD+V+ +N + A
Sbjct: 15 DGKIGLRLKSID---NGIFVQLVQANSPASLVGLRFGDQVLQINGENCA 60
>pdb|2QBW|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 74 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 130
D IF+ V+P PA+ L PGD+++ N + ++ + + V L++ + L++V
Sbjct: 24 DGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIV 79
>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2
Domain (Pdz2b) Of Ptp-Bas (Hptp1e)
Length = 108
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 76 IFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
I++K V P A + G + GDRV+AVN ++ + + V+ ++N+ +HLL+
Sbjct: 44 IYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLL 98
>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e Complexed With A Peptide
Length = 96
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 76 IFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
I++K V P A + G + GDRV+AVN ++ + + V+ ++N+ +HLL+
Sbjct: 35 IYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLL 89
>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e
pdb|3LNX|A Chain A, Second Pdz Domain From Human Ptp1e
pdb|3LNX|B Chain B, Second Pdz Domain From Human Ptp1e
pdb|3LNX|C Chain C, Second Pdz Domain From Human Ptp1e
pdb|3LNX|D Chain D, Second Pdz Domain From Human Ptp1e
pdb|3LNX|E Chain E, Second Pdz Domain From Human Ptp1e
pdb|3LNX|F Chain F, Second Pdz Domain From Human Ptp1e
pdb|3LNY|A Chain A, Second Pdz Domain From Human Ptp1e In Complex With Ra-Gef2
Peptide
Length = 96
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 76 IFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
I++K V P A + G + GDRV+AVN ++ + + V+ ++N+ +HLL+
Sbjct: 35 IYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLL 89
>pdb|3K1R|A Chain A, Structure Of Harmonin Npdz1 In Complex With The Sam-Pbm Of
Sans
Length = 192
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 62 LGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN 120
LGL R E +FI H+ A + GL GD +V +N +I+ + EV+ LI+
Sbjct: 98 LGLSVRGGLEFGCGLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRT 156
>pdb|1UJU|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 111
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 71 EPMD-TIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 128
+P D IFI V P A G L G R++ VN Q++ L + E VQL+++ L +L
Sbjct: 40 DPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVL 99
Query: 129 VV 130
V
Sbjct: 100 VC 101
>pdb|1UEQ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 123
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 52 SYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLP 110
S T+ + G DEP + + +K V P PAA G + GD +V +N +
Sbjct: 22 STTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHT 81
Query: 111 YAEVVQLIQNSP 122
+A+VV+L Q+ P
Sbjct: 82 HADVVKLFQSVP 93
>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand
From The Apc Protein
Length = 102
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 76 IFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
I++K + P A + G + GDRV+AVN ++ + + V+ ++N+ +HLL+
Sbjct: 42 IYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLL 96
>pdb|1OZI|A Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl
Length = 99
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 76 IFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
I++K + P A + G + GDRV+AVN ++ + + V+ ++N+ +HLL+
Sbjct: 39 IYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLL 93
>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl
Length = 94
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 76 IFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
I++K + P A + G + GDRV+AVN ++ + + V+ ++N+ +HLL+
Sbjct: 34 IYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLL 88
>pdb|3ID4|A Chain A, Crystal Structure Of Rsep Pdz2 Domain Fused Gkaspv Peptide
Length = 93
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 69 MDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 128
M EP+ +++V+P+S A+ AGL GDR+V V+ Q + + V L++++P L
Sbjct: 1 MIEPV----LENVQPNSAASKAGLQAGDRIVKVDGQPLTQ--WVTFVMLVRDNPGKSLAL 54
Query: 129 VVPKENDLLQLYF 141
+ ++ L L
Sbjct: 55 EIERQGSPLSLTL 67
>pdb|3KHF|A Chain A, The Crystal Structure Of The Pdz Domain Of Human
Microtubule Associated SerineTHREONINE KINASE 3 (MAST3)
pdb|3KHF|B Chain B, The Crystal Structure Of The Pdz Domain Of Human
Microtubule Associated SerineTHREONINE KINASE 3 (MAST3)
Length = 99
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 21/99 (21%)
Query: 38 FGFTLRHFIVYPPES--YTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPG 95
+GF+LR VY +S YTV + V SPA AGL G
Sbjct: 15 YGFSLRAIRVYMGDSDVYTVHH-------------------VVWSVEDGSPAQEAGLRAG 55
Query: 96 DRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134
D + +N +++ L + +VV+L+ S + L EN
Sbjct: 56 DLITHINGESVLGLVHMDVVELLLKSGNKISLRTTALEN 94
>pdb|3ID3|A Chain A, Crystal Structure Of Rsep Pdz2 I304a Domain
pdb|3ID3|B Chain B, Crystal Structure Of Rsep Pdz2 I304a Domain
Length = 89
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 69 MDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 128
M EP+ +++V+P+S A+ AGL GDR+V V+ Q + + V L++++P L
Sbjct: 1 MIEPV----LENVQPNSAASKAGLQAGDRIVKVDGQPLTQ--WVTFVMLVRDNPGKSLAL 54
Query: 129 VVPKENDLLQLYF 141
+ ++ L L
Sbjct: 55 EIERQGSPLSLTL 67
>pdb|2KV8|A Chain A, Solution Structure Ofrgs12 Pdz Domain
Length = 83
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 85 SPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
SPA GL GD+++AVN + + +VV+LI LH+++
Sbjct: 34 SPADFVGLRAGDQILAVNEINVKKASHEDVVKLIGKCSGVLHMVI 78
>pdb|3ID2|A Chain A, Crystal Structure Of Rsep Pdz2 Domain
pdb|3ID2|B Chain B, Crystal Structure Of Rsep Pdz2 Domain
Length = 90
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 69 MDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 128
M EP+ +++V+P+S A+ AGL GDR+V V+ Q + + V L++++P L
Sbjct: 2 MIEPV----LENVQPNSAASKAGLQAGDRIVKVDGQPLTQ--WVTFVMLVRDNPGKSLAL 55
Query: 129 VVPKENDLLQLYF 141
+ ++ L L
Sbjct: 56 EIERQGSPLSLTL 68
>pdb|2FNE|A Chain A, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|B Chain B, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|C Chain C, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
Length = 117
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 76 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 133
I++K V A+ G L GD+++AVN Q++ + + E V +++ + + L+V+ +
Sbjct: 55 IYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSD 113
>pdb|3TSV|A Chain A, Crystal Structure Of The Third Pdz Domain Of The Human
Zo-1 Maguk Protein
Length = 124
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 44 HFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNN 103
H I+ P +GLR ++ IF+ V SPAA GL GD+++ VNN
Sbjct: 23 HMILRPSMKLVKFRKGDSVGLRLAGGNDV--GIFVAGVLEDSPAAKEGLEEGDQILRVNN 80
Query: 104 QTIADLPYAEVVQLIQNSP 122
++ E V + + P
Sbjct: 81 VDFTNIIREEAVLFLLDLP 99
>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|C Chain C, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|D Chain D, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSZ|A Chain A, Crystal Structure Of Pdz3-Sh3-Guk Core Module From Human
Zo-1 In Complex With 12mer Peptide From Human Jam-A
Cytoplasmic Tail
Length = 391
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 44 HFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNN 103
H I+ P +GLR ++ IF+ V SPAA GL GD+++ VNN
Sbjct: 3 HMILRPSMKLVKFRKGDSVGLRLAGGNDV--GIFVAGVLEDSPAAKEGLEEGDQILRVNN 60
Query: 104 QTIADLPYAEVVQLIQNSP 122
++ E V + + P
Sbjct: 61 VDFTNIIREEAVLFLLDLP 79
>pdb|1VB7|A Chain A, Solution Structure Of The Pdz Domain Of Pdz And Lim Domain
2
Length = 94
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 76 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 127
I + V A AA L PGD +VA+N Q+ ++ +AE I+ S + L L
Sbjct: 32 IIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRL 83
>pdb|2Q9V|A Chain A, Crystal Structure Of The C890s Mutant Of The 4th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
Length = 90
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 62 LGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQN 120
G R +EP + I+I H+ P A G L GD +++V+ + + VVQL+Q
Sbjct: 15 FGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQ 74
Query: 121 SPAYLHLLVVPKENDL 136
+ H+ + ++ L
Sbjct: 75 AAKQGHVNLTVRQTRL 90
>pdb|1IHJ|A Chain A, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
pdb|1IHJ|B Chain B, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
Length = 98
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 76 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 127
IFIK + P SPA G L GDR++++N + + + V+ LI+ + + L
Sbjct: 39 IFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIEL 91
>pdb|2KPK|A Chain A, Magi-1 Pdz1
pdb|2KPL|A Chain A, Magi-1 Pdz1 E6CT
Length = 129
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 60 RRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLI 118
R G DEP + + IK + PAA G + GD +V+VN+ + +A+VV++
Sbjct: 29 RGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIF 88
Query: 119 QNSP 122
Q+ P
Sbjct: 89 QSIP 92
>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 102
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 76 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134
I++ ++ + AA G L GD++++VN Q + +L + + V L +N+ + L V +E+
Sbjct: 41 IYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRES 100
Query: 135 DL 136
+
Sbjct: 101 SI 102
>pdb|1X5Q|A Chain A, Solution Structure Of The First Pdz Domain Of Scribble
Homolog Protein (Hscrib)
Length = 110
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 74 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
+ IFI V PAA AG+ GD+++ VN + + E V+ ++ + + + V
Sbjct: 46 EGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRV 101
>pdb|2Z17|A Chain A, Crystal Sturcture Of Pdz Domain From Human Pleckstrin
Homology, Sec7
Length = 104
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 68 CMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 127
C E M T+ K ++ SPA AGL GD + +N + Y +VV LI++S L +
Sbjct: 44 CSSE-MFTLICK-IQEDSPAHCAGLQAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTI 101
>pdb|2ZPM|A Chain A, Crystal Structure Analysis Of Pdz Domain B
Length = 91
Score = 34.7 bits (78), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 77 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 136
+++V+P+S A+ AGL GDR+V V+ Q + + V L++++P L + ++
Sbjct: 7 VLENVQPNSAASXAGLQAGDRIVXVDGQPLTQ--WVTFVXLVRDNPGXSLALEIERQGSP 64
Query: 137 LQLYF 141
L L
Sbjct: 65 LSLTL 69
>pdb|2I04|A Chain A, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I04|B Chain B, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 34.3 bits (77), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 60 RRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLI 118
R G DEP + + IK + PAA G + GD +V+VN+ + +A+VV++
Sbjct: 11 RGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIF 70
Query: 119 QNSP 122
Q+ P
Sbjct: 71 QSIP 74
>pdb|2W4F|A Chain A, Crystal Structure Of The First Pdz Domain Of Human Scrib1
Length = 97
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 74 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
+ IFI V PAA AG+ GD+++ VN + + E V+ ++ + + + V
Sbjct: 34 EGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRV 89
>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule Complex
With Connexin-45 Peptide
Length = 468
Score = 33.9 bits (76), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 76 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP 122
IF+ V SPAA GL GD+++ VNN ++ E V + + P
Sbjct: 25 IFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLP 71
>pdb|3TSW|B Chain B, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
Length = 194
Score = 33.9 bits (76), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 76 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP 122
IF+ V SPAA GL GD+++ VNN ++ E V + + P
Sbjct: 26 IFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLP 72
>pdb|1X5R|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Glutamate
Receptor Interacting Protein 2
Length = 112
Score = 33.9 bits (76), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 46 IVYPPESYTVLAGD--RRLGLRSRCMDEPMDTI----FIKHVRPHSPAAAAGLVP-GDRV 98
IV+ + VL GD GL+ + +T+ + + P SPA GL+ GDRV
Sbjct: 11 IVHTETTEVVLCGDPLSGFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRV 70
Query: 99 VAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135
+++N D E QL++++ A H +V+ E D
Sbjct: 71 LSINGIATEDGTMEEANQLLRDA-ALAHKVVLEVEFD 106
>pdb|3MH5|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH5|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH6|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 33.9 bits (76), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 76 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 127
+ + +V+ +PAA GL GD ++ N Q + ++ AE+ +++ + P+ L L
Sbjct: 385 VVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNI--AELRKVLDSKPSVLAL 434
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 77 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPY--AEVVQLIQNSPAYLHLLVVPKEN 134
F+ V P+S AA AG+ GD + ++N + I+ A+V + S L LL K+
Sbjct: 289 FVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQV 348
Query: 135 DL-LQLYFGDTAHNPETNQRPPCPIYQNVWEAE 166
++ L+L NQ I+ + AE
Sbjct: 349 NVNLEL------QQSSQNQVDSSSIFNGIEGAE 375
>pdb|3MH4|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH4|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 33.9 bits (76), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 76 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 127
+ + +V+ +PAA GL GD ++ N Q + ++ AE+ +++ + P+ L L
Sbjct: 385 VVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNI--AELRKVLDSKPSVLAL 434
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 77 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPY--AEVVQLIQNSPAYLHLLVVPKEN 134
F+ V P+S AA AG+ GD + ++N + I+ A+V + S L LL K+
Sbjct: 289 FVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQV 348
Query: 135 DL-LQLYFGDTAHNPETNQRPPCPIYQNVWEAE 166
++ L+L NQ I+ + AE
Sbjct: 349 NVNLEL------QQSSQNQVDSSSIFNGIEGAE 375
>pdb|2ZLE|A Chain A, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|B Chain B, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|C Chain C, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|E Chain E, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|F Chain F, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|G Chain G, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|H Chain H, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|I Chain I, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|J Chain J, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|K Chain K, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|L Chain L, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|M Chain M, Cryo-Em Structure Of Degp12OMP
Length = 448
Score = 33.9 bits (76), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 76 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 127
+ + +V+ +PAA GL GD ++ N Q + ++ AE+ +++ + P+ L L
Sbjct: 385 VVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNI--AELRKVLDSKPSVLAL 434
Score = 31.2 bits (69), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 77 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPY--AEVVQLIQNSPAYLHLLVVPKEN 134
F+ V P+S AA AG+ GD + ++N + I+ A+V + S L LL K+
Sbjct: 289 FVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQV 348
Query: 135 DL-LQLYFGDTAHNPETNQRPPCPIYQNVWEAE 166
++ L+L NQ I+ + AE
Sbjct: 349 NVNLEL------QQSSQNQVDSSSIFNGIEGAE 375
>pdb|4A8D|A Chain A, Degp Dodecamer With Bound Omp
pdb|4A8D|B Chain B, Degp Dodecamer With Bound Omp
pdb|4A8D|C Chain C, Degp Dodecamer With Bound Omp
pdb|4A8D|D Chain D, Degp Dodecamer With Bound Omp
pdb|4A8D|E Chain E, Degp Dodecamer With Bound Omp
pdb|4A8D|F Chain F, Degp Dodecamer With Bound Omp
pdb|4A8D|G Chain G, Degp Dodecamer With Bound Omp
pdb|4A8D|H Chain H, Degp Dodecamer With Bound Omp
pdb|4A8D|I Chain I, Degp Dodecamer With Bound Omp
pdb|4A8D|J Chain J, Degp Dodecamer With Bound Omp
pdb|4A8D|K Chain K, Degp Dodecamer With Bound Omp
pdb|4A8D|L Chain L, Degp Dodecamer With Bound Omp
Length = 448
Score = 33.9 bits (76), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 76 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 127
+ + +V+ +PAA GL GD ++ N Q + ++ AE+ +++ + P+ L L
Sbjct: 385 VVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNI--AELRKVLDSKPSVLAL 434
Score = 30.8 bits (68), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 77 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPY--AEVVQLIQNSPAYLHLLVVPKEN 134
F+ V P+S AA AG+ GD + ++N + I+ A+V + S L LL K+
Sbjct: 289 FVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQV 348
Query: 135 DL-LQLYFGDTAHNPETNQRPPCPIYQNVWEAE 166
++ L+L NQ I+ + AE
Sbjct: 349 NVNLEL------QQSSQNQVDSSSIFNGIEGAE 375
>pdb|3SHU|A Chain A, Crystal Structure Of Zo-1 Pdz3
pdb|3SHU|B Chain B, Crystal Structure Of Zo-1 Pdz3
Length = 95
Score = 33.9 bits (76), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 76 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP 122
IF+ V SPAA GL GD+++ VNN ++ E V + + P
Sbjct: 28 IFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLP 74
>pdb|3OTP|A Chain A, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|B Chain B, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|C Chain C, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|D Chain D, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|E Chain E, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|F Chain F, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
Length = 459
Score = 33.9 bits (76), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 76 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 127
+ + +V+ +PAA GL GD ++ N Q + ++ AE+ +++ + P+ L L
Sbjct: 385 VVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNI--AELRKVLDSKPSVLAL 434
Score = 30.8 bits (68), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 77 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPY--AEVVQLIQNSPAYLHLLVVPKEN 134
F+ V P+S AA AG+ GD + ++N + I+ A+V + S L LL K+
Sbjct: 289 FVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQV 348
Query: 135 DL-LQLYFGDTAHNPETNQRPPCPIYQNVWEAE 166
++ L+L NQ I+ + AE
Sbjct: 349 NVNLEL------QQSSQNQVDSSSIFNGIEGAE 375
>pdb|3MH7|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 33.9 bits (76), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 76 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 127
+ + +V+ +PAA GL GD ++ N Q + ++ AE+ +++ + P+ L L
Sbjct: 385 VVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNI--AELRKVLDSKPSVLAL 434
Score = 29.6 bits (65), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 77 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADL 109
F+ V P+S AA AG+ GD + ++N + I+
Sbjct: 289 FVSQVLPNSSAAKAGIKAGDVITSLNGKPISSF 321
>pdb|3CS0|A Chain A, Crystal Structure Of Degp24
Length = 448
Score = 33.9 bits (76), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 76 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 127
+ + +V+ +PAA GL GD ++ N Q + ++ AE+ +++ + P+ L L
Sbjct: 385 VVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNI--AELRKVLDSKPSVLAL 434
Score = 29.6 bits (65), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 77 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADL 109
F+ V P+S AA AG+ GD + ++N + I+
Sbjct: 289 FVSQVLPNSSAAKAGIKAGDVITSLNGKPISSF 321
>pdb|1KY9|A Chain A, Crystal Structure Of Degp (Htra)
pdb|1KY9|B Chain B, Crystal Structure Of Degp (Htra)
pdb|3OU0|A Chain A, Re-Refined 3cs0
Length = 448
Score = 33.9 bits (76), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 76 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 127
+ + +V+ +PAA GL GD ++ N Q + ++ AE+ +++ + P+ L L
Sbjct: 385 VVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNI--AELRKVLDSKPSVLAL 434
Score = 29.6 bits (65), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 77 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADL 109
F+ V P+S AA AG+ GD + ++N + I+
Sbjct: 289 FVSQVLPNSSAAKAGIKAGDVITSLNGKPISSF 321
>pdb|2D92|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Inad-Like
Protein
Length = 108
Score = 33.5 bits (75), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 69 MDEPMDTIFIKHVRPHSPAA-AAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS-PAYLH 126
+D I I+ + A + GL+PGDR+V+VN + + AE V++++ P +H
Sbjct: 39 LDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVH 98
Query: 127 L 127
L
Sbjct: 99 L 99
>pdb|1Y7N|A Chain A, Solution Structure Of The Second Pdz Domain Of The Human
Neuronal Adaptor X11alpha
Length = 90
Score = 33.5 bits (75), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 11/45 (24%), Positives = 26/45 (57%)
Query: 87 AAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 131
A G+ G R++ +N Q++ P+ ++V ++ N+ +H+ +P
Sbjct: 44 AERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMP 88
>pdb|3PDV|A Chain A, Structure Of The Pdlim2 Pdz Domain In Complex With The
C-Terminal 6- Peptide Extension Of Ns1
Length = 89
Score = 33.5 bits (75), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 76 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 127
I + V A A L PGD +VA+N ++ + +AE I+ SP+ L L
Sbjct: 27 IMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRL 78
>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|A Chain A, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|C Chain C, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
Length = 112
Score = 33.1 bits (74), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 25/101 (24%)
Query: 37 GFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPG 95
GFGF+LR G R MD +++ + PA +G + G
Sbjct: 36 GFGFSLR-------------------GGREYNMD-----LYVLRLAEDGPAERSGKMRIG 71
Query: 96 DRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 136
D ++ +N +T ++ ++ ++LI+N + L + E +
Sbjct: 72 DEILEINGETTKNMKHSRAIELIKNGGRRVRLFLKRGETSV 112
>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
pdb|2JIK|B Chain B, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 101
Score = 33.1 bits (74), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 76 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
I++ ++ + AA G L GD++++VN Q + +L + + V L +N+ + L V
Sbjct: 39 IYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRV 93
>pdb|2PA1|A Chain A, Structure Of The Pdz Domain Of Human Pdlim2 Bound To A
C-Terminal Extension From Human Beta-Tropomyosin
Length = 87
Score = 33.1 bits (74), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 76 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 127
I + V A A L PGD +VA+N ++ + +AE I+ SP+ L L
Sbjct: 28 IMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRL 79
>pdb|2OGP|A Chain A, Solution Structure Of The Second Pdz Domain Of Par-3
Length = 97
Score = 33.1 bits (74), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 76 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSP--AYLHLLVVPK 132
I++K++ P A G L GDR++ VN +A EVV L++++ + LLV +
Sbjct: 35 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQ 94
Query: 133 E 133
E
Sbjct: 95 E 95
>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human
Synaptojanin 2 Binding Protein
Length = 120
Score = 32.7 bits (73), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 76 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
I++ ++ + AA G L GD++++VN Q + +L + + V L +N+ + L V
Sbjct: 49 IYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRV 103
>pdb|1UJV|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Membrane Associated Guanylate Kinase Inverted-2 (Magi-2)
Length = 96
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 91 GLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP 122
GL GD +V +N Q + +L + EVV ++++ P
Sbjct: 47 GLCEGDLIVEINQQNVQNLSHTEVVDILKDCP 78
>pdb|2DMZ|A Chain A, Solution Structure Of The Third Pdz Domain Of Human Inad-
Like Protein
Length = 129
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 58 GDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVP-GDRVVAVNNQTIADLPYAEVVQ 116
G R +G I++K V P S A G + D++VAV+ I +VV+
Sbjct: 30 GIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVE 89
Query: 117 LIQNSPAYLHLLVVPKE 133
+++N+ +HL +V ++
Sbjct: 90 VLRNAGQVVHLTLVRRK 106
>pdb|2KOJ|A Chain A, Solution Structure Of Mouse Par-3 Pdz2 (Residues 450-558)
Length = 111
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 76 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSP--AYLHLLVVPK 132
I++K++ P A G L GDR++ VN +A EVV L++++ + LLV +
Sbjct: 41 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQ 100
Query: 133 E 133
E
Sbjct: 101 E 101
>pdb|1U39|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 80
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 11/45 (24%), Positives = 26/45 (57%)
Query: 87 AAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 131
A G+ G R++ +N Q++ P+ ++V ++ N+ +H+ +P
Sbjct: 35 AERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMP 79
>pdb|2YT8|A Chain A, Solution Structure Of The Pdz Domain Of Amyloid Beta A4
Precursor Protein-Binding Family A Member 3 (Neuron-
Specific X11l2 Protein) (Neuronal Munc18-1-Interacting
Protein 3) (Mint-3) (Adapter Protein X11gamma)
Length = 94
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 10/42 (23%), Positives = 25/42 (59%)
Query: 90 AGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 131
G+ G R++ +N Q++ P+A +++L+ + +H+ +P
Sbjct: 43 GGIRVGHRIIEINGQSVVATPHARIIELLTEAYGEVHIKTMP 84
>pdb|1U3B|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 185
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 46 IVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQT 105
IV P TVL RR LR + + I +R A G+ G R++ +N Q+
Sbjct: 87 IVRCPPVTTVLI--RRPDLRYQLGFSVQNGIICSLMRG-GIAERGGVRVGHRIIEINGQS 143
Query: 106 IADLPYAEVVQLIQNSPAYLHLLVVP 131
+ P+ ++V ++ N+ +H+ +P
Sbjct: 144 VVATPHEKIVHILSNAVGEIHMKTMP 169
>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues 451-549)
Length = 121
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 76 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSP--AYLHLLVVPK 132
I++K++ P A G L GDR++ VN + EVV L++++ + LLV +
Sbjct: 60 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQ 119
Query: 133 EN 134
E+
Sbjct: 120 ED 121
>pdb|1VAE|A Chain A, Solution Structure Of The Pdz Domain Of Mouse Rhophilin-2
Length = 111
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 53 YTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYA 112
+TV GD LR + P+ F+ PH A+ AG GD +V++ L +
Sbjct: 21 FTVEEGDLGFTLRG---NTPVQVHFLD---PHCSASLAGAKEGDYIVSIQGVDCKWLTVS 74
Query: 113 EVVQLIQN 120
EV++L+++
Sbjct: 75 EVMKLLKS 82
>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Dlg3
Length = 94
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 74 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
++I+I + A G L GDR++AVNN + D+ + E V ++N+ ++L V
Sbjct: 33 NSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKV 89
>pdb|3QE1|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The C-Terminal Residues (Eseskv) Of
Girk3
Length = 107
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 78 IKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135
+ V P A AG+ GDR++ VN + + +VV LI+ L L V+ E++
Sbjct: 47 VSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSVESE 104
>pdb|3QIK|A Chain A, Crystal Structure Of The First Pdz Domain Of Prex1
Length = 101
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 69 MDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAY---L 125
++E + +K V+ S A AGL G ++ ++N + P++EV ++ S L
Sbjct: 34 IEEKNKAVVVKSVQRGSLAEVAGLQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPL 93
Query: 126 HLLVVPK 132
LLV K
Sbjct: 94 RLLVATK 100
>pdb|2EHR|A Chain A, Solution Structure Of The Sixth Pdz Domain Of Human Inad-
Like Protein
Length = 117
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 71 EPMDTIFIKHVRPHSPAAAA-GLVPGDRVVAVNNQTIADLPYAEVVQLIQNS 121
E + IFIK V SPA L GD+++ V+ + + ++E V+ I+N+
Sbjct: 47 EELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNA 98
>pdb|1V6B|A Chain A, Solution Structure Of The Third Pdz Domain Of Mouse
Harmonin
Length = 118
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 69 MDEPMDTIFIKHVRPHSPAAA-AGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS----PA 123
+D P+ + + V A G+V GD ++A+N + + D AE +Q +
Sbjct: 38 VDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGD 97
Query: 124 YLHLLVV---PKENDLLQLYF 141
++ L+V PKE D +F
Sbjct: 98 WIDLVVAVCPPKEYDDELTFF 118
>pdb|1V5L|A Chain A, Solution Structure Of Pdz Domain Of Mouse Alpha-Actinin-2
Associated Lim Protein
Length = 103
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 76 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135
+ I + P S AAAA L PGD ++A++ + +A+ I+ + L L + E
Sbjct: 31 LVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETR 90
Query: 136 L 136
L
Sbjct: 91 L 91
>pdb|2JIL|A Chain A, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
pdb|2JIL|B Chain B, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
Length = 97
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 76 IFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
+ I VRP PA G + PGDR+++V+ + +AE + +++ LL+
Sbjct: 34 VVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEAALLI 88
>pdb|2QT5|A Chain A, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
pdb|2QT5|B Chain B, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
Length = 200
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 76 IFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
+ I VRP PA G + PGDR+++V+ + +AE + +++ LL+
Sbjct: 137 VVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLI 191
>pdb|1P1D|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 196
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 77 FIKHVRPHSPAAAAGLVP-GDRVVAVNNQTIADLPYAEVVQLIQNS 121
I ++ SPA G++ GDRV+A+N D + E QL+++S
Sbjct: 39 LISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDS 84
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 45 FIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVP-GDRVVAVNN 103
F V P+ ++V G + + S +P D + I ++ S A G + GD+++A++N
Sbjct: 109 FHVKLPKKHSVELG---ITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDN 165
Query: 104 QTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134
+ + VQ++Q + L + E+
Sbjct: 166 IRLDSCSMEDAVQILQQCEDLVKLKIRKDED 196
>pdb|2BYG|A Chain A, 2nd Pdz Domain Of Discs Large Homologue 2
Length = 117
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 74 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
++I++ + A G L GDR++ VNN ++ ++ + E V +++N+ ++L V
Sbjct: 54 NSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKV 110
>pdb|1P1E|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 101
Score = 30.4 bits (67), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 77 FIKHVRPHSPAAAAGLVP-GDRVVAVNNQTIADLPYAEVVQLIQNS 121
I ++ SPA G++ GDRV+A+N D + E QL+++S
Sbjct: 39 LISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDS 84
>pdb|2GZV|A Chain A, The Cystal Structure Of The Pdz Domain Of Human Pick1
(Casp Target)
Length = 114
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 76 IFIKHVRPHSPAAAAGLVP-GDRVVAVNNQTIADLPYAEVVQLIQ 119
++I V ++PAA G V GD + VN ++I EV ++IQ
Sbjct: 52 LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQ 96
>pdb|2P3W|A Chain A, Crystal Structure Of The Htra3 Pdz Domain Bound To A
Phage-Derived Ligand (Fgrwv)
pdb|2P3W|B Chain B, Crystal Structure Of The Htra3 Pdz Domain Bound To A
Phage-Derived Ligand (Fgrwv)
Length = 112
Score = 30.4 bits (67), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 76 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIAD 108
I+++ V P+SP+ G+ GD +V VN + + D
Sbjct: 37 IYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLVD 69
>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|B Chain B, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|C Chain C, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|D Chain D, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|E Chain E, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
Length = 105
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 74 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
++I++ + A G L GD+++AVNN + ++ + E V ++N+ +++L V
Sbjct: 41 NSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAVTALKNTSDFVYLKV 97
>pdb|2V1W|A Chain A, Crystal Structure Of Human Lim Protein Ril (Pdlim4) Pdz
Domain Bound To The C-Terminal Peptide Of Human Alpha-
Actinin-1
pdb|2V1W|B Chain B, Crystal Structure Of Human Lim Protein Ril (Pdlim4) Pdz
Domain Bound To The C-Terminal Peptide Of Human Alpha-
Actinin-1
Length = 90
Score = 30.4 bits (67), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 76 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135
+ I V S AA A L PGD + A+N ++ + + E I+ +L L V E +
Sbjct: 28 LTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKGCHDHLTLSVSRPEGE 87
>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant
Protein Domain
Length = 99
Score = 30.0 bits (66), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 74 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
++I++ + A G L GD+++AVNN + ++ + E V ++N+ +++L V
Sbjct: 38 NSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDFVYLKV 94
>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous
Polyposis Coli Cytoskeletal Polarity Complex
Length = 100
Score = 30.0 bits (66), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 74 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
++I++ + A G L GD+++AVNN + ++ + E V ++N+ +++L V
Sbjct: 39 NSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAVTALKNTSDFVYLKV 95
>pdb|1V5Q|A Chain A, Solution Structure Of The Pdz Domain From Mouse Glutamate
Receptor Interacting Protein 1a-L (Grip1) Homolog
Length = 122
Score = 30.0 bits (66), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 77 FIKHVRPHSPAAAAGLVP-GDRVVAVNNQTIADLPYAEVVQLIQNS 121
I ++ SPA G++ GDRV+A+N D + E QL+++S
Sbjct: 48 LISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDS 93
>pdb|3QDO|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The Gly-Gly Linker Followed By
C-Terminal (Eseskv) Of Girk3
Length = 109
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 78 IKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 131
+ V P A AG+ GDR++ VN + + +VV LI+ L L V+
Sbjct: 47 VSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVLS 100
>pdb|3NUM|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 332
Score = 30.0 bits (66), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 60 RRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADL-PYAEVVQ-- 116
+ L R R + + +I V P +PA A GL D ++++N Q++ ++V++
Sbjct: 240 KELKDRHRDFPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIKRE 299
Query: 117 -----LIQNSPAYLHLLVVPKENDLLQ 138
+++ + + V+P+E D L+
Sbjct: 300 STLNMVVRRGNEDIMITVIPEEIDPLE 326
>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18
Papillomavirus E6 Peptide
Length = 97
Score = 30.0 bits (66), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 74 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
++I++ + A G L GD+++AVNN + ++ + E V ++N+ +++L V
Sbjct: 29 NSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAVTALKNTSDFVYLKV 85
>pdb|3HPK|A Chain A, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl
Tail Of Glur2
pdb|3HPK|B Chain B, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl
Tail Of Glur2
Length = 125
Score = 30.0 bits (66), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 76 IFIKHVRPHSPAAAAGLVP-GDRVVAVNNQTIADLPYAEVVQLIQ 119
++I V ++PAA G V GD + VN ++I EV ++IQ
Sbjct: 47 LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQ 91
>pdb|3L4F|D Chain D, Crystal Structure Of Betapix Coiled-Coil Domain And Shank
Pdz Complex
Length = 132
Score = 30.0 bits (66), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 23/124 (18%)
Query: 12 APRIKKSSQQLGPRNLILRRSAALNGFGFTLRHFIVYPP-ESYTVLAGDRRLGLRSRCMD 70
PR S + + ++L++ + GFGF LR P E +T
Sbjct: 16 VPRGSGSDYIIKEKTVLLQKKDS-EGFGFVLRGAKAQTPIEEFT---------------- 58
Query: 71 EPMDTI----FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLH 126
P +++ V A AGL GD ++ VN Q + + + +VV +I+ L
Sbjct: 59 -PTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLM 117
Query: 127 LLVV 130
+ VV
Sbjct: 118 VKVV 121
>pdb|2PKU|A Chain A, Solution Structure Of Pick1 Pdz In Complex With The
Carboxyl Tail Peptide Of Glur2
Length = 87
Score = 30.0 bits (66), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 76 IFIKHVRPHSPAAAAGLVP-GDRVVAVNNQTIADLPYAEVVQLIQ 119
++I V ++PAA G V GD + VN ++I EV ++IQ
Sbjct: 30 LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQ 74
>pdb|3HPM|A Chain A, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With The
C Tail Peptide Of Glur2
pdb|3HPM|B Chain B, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With The
C Tail Peptide Of Glur2
Length = 111
Score = 30.0 bits (66), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 76 IFIKHVRPHSPAAAAGLVP-GDRVVAVNNQTIADLPYAEVVQLIQ 119
++I V ++PAA G V GD + VN ++I EV ++IQ
Sbjct: 33 LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQ 77
>pdb|2YTW|A Chain A, Solution Structure Of The Pdz-Domain Of Human Protease
Htra 1 Precursor
Length = 118
Score = 29.6 bits (65), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 12/83 (14%)
Query: 64 LRSRCMDEPMDTI---FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADL-PYAEVVQ--- 116
L+ R D P D I +I V P +PA A GL D ++++N Q++ ++V++
Sbjct: 36 LKDRHRDFP-DVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIKRES 94
Query: 117 ----LIQNSPAYLHLLVVPKEND 135
+++ + + V+P+E D
Sbjct: 95 TLNMVVRRGNEDIMITVIPEEID 117
>pdb|3NZI|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 334
Score = 29.6 bits (65), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 64 LRSRCMDEPMDTI---FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIA 107
L+ R D P D I +I V P +PA A GL D ++++N Q++
Sbjct: 242 LKDRHRDFP-DVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVV 287
>pdb|1Q3O|A Chain A, Crystal Structure Of The Shank Pdz-ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-pdz
Dimerization
pdb|1Q3O|B Chain B, Crystal Structure Of The Shank Pdz-ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-pdz
Dimerization
pdb|1Q3P|A Chain A, Crystal Structure Of The Shank Pdz-Ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-Pdz
Dimerization
pdb|1Q3P|B Chain B, Crystal Structure Of The Shank Pdz-Ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-Pdz
Dimerization
Length = 109
Score = 29.6 bits (65), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 77 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 130
+++ V A AGL GD ++ VN Q + + + +VV +I+ L + VV
Sbjct: 48 YLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV 101
>pdb|3QGL|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|B Chain B, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|C Chain C, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|D Chain D, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|E Chain E, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
Length = 101
Score = 29.6 bits (65), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 78 IKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 131
+ V P A AG+ GDR++ VN + + +VV LI+ L L V+
Sbjct: 47 VSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVLS 100
>pdb|1VA8|A Chain A, Solution Structure Of The Pdz Domain Of Pals1 Protein
Length = 113
Score = 29.6 bits (65), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 73 MDTIFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 131
MD++ I + A +GL+ GD V+ +N I EV L+ + L +++P
Sbjct: 47 MDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIP 106
>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
pdb|4AMH|B Chain B, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
Length = 106
Score = 29.6 bits (65), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 74 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
++I++ + A G L GD+++AVNN + ++ + E V ++N+ +++L V
Sbjct: 32 NSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDFVYLKV 88
>pdb|4A8A|A Chain A, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|B Chain B, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|C Chain C, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|D Chain D, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|E Chain E, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|F Chain F, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|G Chain G, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|H Chain H, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|I Chain I, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|J Chain J, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|K Chain K, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|L Chain L, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8B|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8C|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A9G|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|M Chain M, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|N Chain N, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|O Chain O, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|P Chain P, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Q Chain Q, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|R Chain R, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|S Chain S, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|T Chain T, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|U Chain U, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|V Chain V, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|W Chain W, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Y Chain Y, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
Length = 436
Score = 29.6 bits (65), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 76 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 130
I I V SPAA AGL D ++ VN + + AE+ +++ PA + L +V
Sbjct: 365 IKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSI--AEMRKVLAAKPAIIALQIV 417
>pdb|2EDV|A Chain A, Solution Structure Of The Pdz Domain From Human Ferm And
Pdz Domain Containing 1
Length = 96
Score = 29.6 bits (65), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 87 AAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 130
+A L PGD+++ +NN+ DL + V +++ + L + VV
Sbjct: 43 SAHGKLFPGDQILQMNNEPAEDLSWERAVDILREAEDSLSITVV 86
>pdb|3QJM|A Chain A, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJM|B Chain B, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|A Chain A, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|B Chain B, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|C Chain C, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|D Chain D, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|E Chain E, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|F Chain F, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|G Chain G, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|H Chain H, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
Length = 115
Score = 29.6 bits (65), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 77 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 130
+++ V A AGL GD ++ VN Q + + + +VV +I+ L + VV
Sbjct: 48 YLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV 101
>pdb|2EEG|A Chain A, Solution Structure Of Pdz Domain Of Pdz And Lim Domain
Protein
Length = 94
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 76 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
+ I V S AA A L PGD + A+N ++ + + E I+ +L L V
Sbjct: 34 LTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKGCHDHLTLSV 87
>pdb|2LOB|A Chain A, Pdz Domain Of Cal (Cystic Fibrosis Transmembrane
Regulator-Associated Ligand)
Length = 112
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 76 IFIKHVRPHSPAA-AAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 130
I I + P PA GL GD ++AVN + D + E V ++ + VV
Sbjct: 55 ILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVV 110
>pdb|2JOA|A Chain A, Htra1 Bound To An Optimized Peptide: Nmr Assignment Of Pdz
Domain And Ligand Resonances
Length = 105
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 64 LRSRCMDEPMDTI---FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIA 107
L+ R D P D I +I V P +PA A GL D ++++N Q++
Sbjct: 23 LKDRHRDFP-DVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVV 68
>pdb|2DC2|A Chain A, Solution Structure Of Pdz Domain
Length = 103
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 76 IFIKHVRPHSPAA-AAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 130
I I + P PA GL GD ++AVN + D + E V ++ + VV
Sbjct: 37 ILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVV 92
>pdb|1WHD|A Chain A, Solution Structure Of The Pdz Domain Of Rgs3
Length = 100
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 30/103 (29%)
Query: 27 LILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSP 86
+ +RR +GFGFT+ C D P + ++ V P
Sbjct: 19 ITIRRGK--DGFGFTI-------------------------CCDSP---VRVQAVDSGGP 48
Query: 87 AAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
A AGL D V+ +N + + E+ I++ P+ + LLV
Sbjct: 49 AERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLV 91
>pdb|4E34|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E34|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E35|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E35|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 87
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 76 IFIKHVRPHSPAA-AAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 130
I I + P PA GL GD ++AVN + D + E V ++ + VV
Sbjct: 30 ILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVV 85
>pdb|2YUB|A Chain A, Solution Structure Of The Pdz Domain From Mouse Lim Domain
Kinase
Length = 118
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 75 TIFIKHV-RPH-SPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
T+ +K V R H SP + PGDR++ +N + L EV I+ + L LL+
Sbjct: 45 TVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQTSQTLQLLI 101
>pdb|1FC7|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
pdb|1FC9|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
pdb|1FCF|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
Length = 388
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
Query: 83 PHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP-----AYLHLLVVPKENDLL 137
P PA AG GD +V V+ + L +V L+Q LH P L
Sbjct: 108 PGGPAEKAGARAGDVIVTVDGTAVKGLSLYDVSDLLQGEADSQVEVVLHAPGAPSNTRTL 167
Query: 138 QLYFGDTAHNPET 150
QL NP T
Sbjct: 168 QLTRQKVTINPVT 180
>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
pdb|2AWX|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
Length = 105
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 74 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
++I++ + A G L GD+++AVN+ ++ ++ + E V ++N+ +++L V
Sbjct: 33 NSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYLKV 89
>pdb|3PV2|A Chain A, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|B Chain B, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|C Chain C, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|D Chain D, Structure Of Legionella Fallonii Degq (Wt)
Length = 451
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 66 SRCMDEPMD--TIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIA 107
++ M P D + V P+SPA AGL GD + +N+ I
Sbjct: 272 AQAMGYPEDFQGALVSQVNPNSPAELAGLKAGDIITQINDTKIT 315
>pdb|3PV5|A Chain A, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|B Chain B, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|C Chain C, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|D Chain D, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
Length = 451
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 66 SRCMDEPMD--TIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTI 106
++ M P D + V P+SPA AGL GD + +N+ I
Sbjct: 272 AQAMGYPEDFQGALVSQVNPNSPAELAGLKAGDIITQINDTKI 314
>pdb|3PV3|A Chain A, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|B Chain B, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|C Chain C, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|D Chain D, Structure Of Legionella Fallonii Degq (S193a Variant)
Length = 451
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 66 SRCMDEPMD--TIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTI 106
++ M P D + V P+SPA AGL GD + +N+ I
Sbjct: 272 AQAMGYPEDFQGALVSQVNPNSPAELAGLKAGDIITQINDTKI 314
>pdb|2F5Y|A Chain A, Crystal Structure Of The Pdz Domain From Human Rgs-3
pdb|2F5Y|B Chain B, Crystal Structure Of The Pdz Domain From Human Rgs-3
Length = 91
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 68 CMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 127
C D P + ++ V PA AGL D V+ +N + + E+ I++ P+ + L
Sbjct: 21 CCDSP---VRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIIL 77
Query: 128 LV 129
LV
Sbjct: 78 LV 79
>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7
Homolog B
Length = 93
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 59 DRRLGLRSRCMDEPMDTIFIKHVRPHSPAAA-AGLVPGDRVVAVNNQTIADLPYAEVVQL 117
D LG E I+I V P A GL GD++++VN ++ + + V+L
Sbjct: 15 DEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVEL 74
Query: 118 IQNSPAYLHLLV 129
++ + + L+V
Sbjct: 75 LKAAQGSVKLVV 86
>pdb|3VAX|A Chain A, Crytal Structure Of Dnda From Streptomyces Lividans
pdb|3VAX|B Chain B, Crytal Structure Of Dnda From Streptomyces Lividans
Length = 400
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 101 VNNQTIADLPYAEVVQLIQNSPAYLHL 127
VNN+T P AE+ Q ++ +P YLH+
Sbjct: 168 VNNETGVIQPVAELAQQLRATPTYLHV 194
>pdb|3PV4|A Chain A, Structure Of Legionella Fallonii Degq (Delta-Pdz2 Variant)
Length = 354
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 77 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIA 107
+ V P+SPA AGL GD + +N+ I
Sbjct: 285 LVSQVNPNSPAELAGLKAGDIITQINDTKIT 315
>pdb|2PZD|A Chain A, Crystal Structure Of The Htra2OMI PDZ DOMAIN BOUND TO A
PHAGE-Derived Ligand (Wtmfwv)
pdb|2PZD|B Chain B, Crystal Structure Of The Htra2OMI PDZ DOMAIN BOUND TO A
PHAGE-Derived Ligand (Wtmfwv)
Length = 113
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 76 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIAD 108
+ I V SPA AGL PGD ++A+ Q + +
Sbjct: 37 VLIHKVILGSPAHRAGLRPGDVILAIGEQMVQN 69
>pdb|1QAU|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 112
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 76 IFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 130
+ I + A +GL+ GD ++AVN++ + DL Y +++++ + H++++
Sbjct: 28 VIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLI 83
>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
pdb|2G2L|B Chain B, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
Length = 105
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 74 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
++I++ + A G L GD+++AVN+ + ++ + E V ++N+ +++L V
Sbjct: 33 NSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTHEEAVTALKNTSDFVYLKV 89
>pdb|1QAV|B Chain B, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 115
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 76 IFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 130
+ I + A +GL+ GD ++AVN++ + DL Y +++++ + H++++
Sbjct: 30 VIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLI 85
>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
pdb|2AWU|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
Length = 105
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 74 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
++I++ + A G L GD+++AVN+ + ++ + E V ++N+ +++L V
Sbjct: 33 NSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEAVTALKNTSDFVYLKV 89
>pdb|2AWW|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
pdb|2AWW|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
Length = 105
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 74 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
++I++ + A G L GD+++AVN+ + ++ + E V ++N+ +++L V
Sbjct: 33 NSIYVTSIVEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEAVTALKNTSDFVYLKV 89
>pdb|1B8Q|A Chain A, Solution Structure Of The Extended Neuronal Nitric Oxide
Synthase Pdz Domain Complexed With An Associated Peptide
Length = 127
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 87 AAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 130
A +GL+ GD ++AVN++ + DL Y +++++ + H++++
Sbjct: 46 AEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLI 90
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 74 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK 132
++I++ + A G L GD+++AVN+ + D+ + + V ++N+ ++L V
Sbjct: 184 NSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKP 243
Query: 133 ENDLL 137
N L
Sbjct: 244 SNAYL 248
>pdb|1LCY|A Chain A, Crystal Structure Of The Mitochondrial Serine Protease
Htra2
Length = 325
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 62 LGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTI 106
L LR + + I V SPA AGL PGD ++A+ Q +
Sbjct: 244 LQLREPSFPDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMV 288
>pdb|1WIF|A Chain A, The Solution Structure Of Rsgi Ruh-020, A Pdz Domain Of
Hypothetical Protein From Mouse
Length = 126
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 78 IKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSP--------AYLHLL 128
I H+ AA+ G++ PGD +++V + + E ++L+QN AY L
Sbjct: 53 ISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRGFL 112
Query: 129 VVPKE 133
+P+E
Sbjct: 113 EIPQE 117
>pdb|3GCN|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Omp Peptide (Yqf)
pdb|3GCO|A Chain A, Crystal Structure Of Degs H198p/d320a Mutant Modified By
Dfp In Complex With Dnrdgnvyqf Omp Peptide
pdb|3GDS|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Dnrdgnvyyf Peptide
pdb|3GDU|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDV|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
Length = 340
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 71 EPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQ 104
+ + I + V P PAA AG+ D +++V+N+
Sbjct: 262 DQLQGIVVNEVSPDGPAANAGIQVNDLIISVDNK 295
>pdb|1TE0|A Chain A, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
pdb|1TE0|B Chain B, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
Length = 318
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 71 EPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQ 104
+ + I + V P PAA AG+ D +++V+N+
Sbjct: 241 DQLQGIVVNEVSPDGPAANAGIQVNDLIISVDNK 274
>pdb|1SOZ|A Chain A, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|B Chain B, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|C Chain C, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1VCW|A Chain A, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|B Chain B, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|C Chain C, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|2R3Y|A Chain A, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|B Chain B, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|C Chain C, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
Length = 314
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 71 EPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQ 104
+ + I + V P PAA AG+ D +++V+N+
Sbjct: 236 DQLQGIVVNEVSPDGPAANAGIQVNDLIISVDNK 269
>pdb|1SOT|A Chain A, Crystal Structure Of The Degs Stress Sensor
pdb|1SOT|B Chain B, Crystal Structure Of The Degs Stress Sensor
pdb|1SOT|C Chain C, Crystal Structure Of The Degs Stress Sensor
Length = 320
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 71 EPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQ 104
+ + I + V P PAA AG+ D +++V+N+
Sbjct: 236 DQLQGIVVNEVSPDGPAANAGIQVNDLIISVDNK 269
>pdb|3BPU|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Membrane
Associated Guanylate Kinase, C677s And C709s Double
Mutant
Length = 88
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 91 GLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP 122
GL GD +V VN + + L + +VV ++ SP
Sbjct: 42 GLKEGDLIVEVNKKNVQALTHNQVVDMLVESP 73
>pdb|1FC6|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
Length = 388
Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Query: 83 PHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP-----AYLHLLVVPKENDLL 137
P PA AG GD +V V+ + +V L+Q LH P L
Sbjct: 108 PGGPAEKAGARAGDVIVTVDGTAVKGXSLYDVSDLLQGEADSQVEVVLHAPGAPSNTRTL 167
Query: 138 QLYFGDTAHNPET 150
QL NP T
Sbjct: 168 QLTRQKVTINPVT 180
>pdb|3O46|A Chain A, Crystal Structure Of The Pdz Domain Of Mpp7
Length = 93
Score = 26.6 bits (57), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 70 DEPMDTIFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 128
DE I + + A +GL+ GD + VN + D E++Q++ S +
Sbjct: 24 DEQTGAIIVARIXRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGAITFK 83
Query: 129 VVP 131
++P
Sbjct: 84 IIP 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,400,675
Number of Sequences: 62578
Number of extensions: 213962
Number of successful extensions: 604
Number of sequences better than 100.0: 176
Number of HSP's better than 100.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 449
Number of HSP's gapped (non-prelim): 193
length of query: 177
length of database: 14,973,337
effective HSP length: 92
effective length of query: 85
effective length of database: 9,216,161
effective search space: 783373685
effective search space used: 783373685
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)