Query psy16403
Match_columns 177
No_of_seqs 230 out of 2085
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 20:26:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16403.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16403hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00595 PDZ: PDZ domain (Also 99.5 4.3E-13 9.3E-18 88.3 10.4 81 26-130 1-81 (81)
2 KOG3550|consensus 99.3 9.1E-12 2E-16 89.8 7.9 82 23-130 90-172 (207)
3 KOG3209|consensus 99.3 1.9E-11 4.2E-16 106.1 9.3 87 21-133 751-838 (984)
4 cd00992 PDZ_signaling PDZ doma 99.3 2.1E-10 4.4E-15 75.2 11.8 80 25-129 2-81 (82)
5 KOG3209|consensus 99.2 1.6E-10 3.5E-15 100.4 10.2 83 22-130 897-980 (984)
6 smart00228 PDZ Domain present 99.2 1.4E-09 2.9E-14 71.5 12.6 82 25-132 3-84 (85)
7 PF13180 PDZ_2: PDZ domain; PD 99.2 6.7E-10 1.4E-14 73.3 10.3 61 74-136 14-76 (82)
8 KOG3549|consensus 99.0 1.1E-09 2.5E-14 88.6 8.3 87 19-130 50-137 (505)
9 cd00136 PDZ PDZ domain, also c 99.0 4.2E-09 9E-14 67.0 9.4 55 75-129 14-69 (70)
10 cd00991 PDZ_archaeal_metallopr 99.0 5E-09 1.1E-13 68.6 9.6 60 74-135 10-71 (79)
11 cd00988 PDZ_CTP_protease PDZ d 98.9 2.6E-08 5.6E-13 65.7 11.2 59 74-132 13-72 (85)
12 KOG3606|consensus 98.9 6E-09 1.3E-13 81.9 7.8 110 10-135 145-256 (358)
13 KOG3551|consensus 98.9 5.9E-09 1.3E-13 85.5 7.8 82 24-130 85-167 (506)
14 cd00989 PDZ_metalloprotease PD 98.9 2.8E-08 6E-13 64.6 9.3 58 75-134 13-71 (79)
15 cd00987 PDZ_serine_protease PD 98.8 5E-08 1.1E-12 64.8 9.1 59 74-134 24-84 (90)
16 PLN00049 carboxyl-terminal pro 98.8 7.7E-08 1.7E-12 81.0 11.1 91 44-134 64-163 (389)
17 COG0793 Prc Periplasmic protea 98.8 4.8E-08 1E-12 82.5 9.9 90 44-133 79-172 (406)
18 cd00990 PDZ_glycyl_aminopeptid 98.8 8.8E-08 1.9E-12 62.4 8.8 58 74-134 12-69 (80)
19 cd00986 PDZ_LON_protease PDZ d 98.7 1.3E-07 2.8E-12 61.7 8.8 59 74-135 8-68 (79)
20 PRK10139 serine endoprotease; 98.7 2.4E-07 5.3E-12 79.4 12.5 99 35-135 239-351 (455)
21 KOG3553|consensus 98.7 3.5E-08 7.5E-13 66.5 5.1 48 73-120 58-105 (124)
22 KOG3651|consensus 98.6 3.7E-07 8E-12 73.0 9.4 84 23-131 4-88 (429)
23 TIGR02037 degP_htrA_DO peripla 98.6 6.6E-07 1.4E-11 76.2 11.6 61 73-135 256-318 (428)
24 KOG3552|consensus 98.6 8.5E-08 1.8E-12 85.9 5.9 80 20-132 53-132 (1298)
25 KOG3580|consensus 98.6 2.4E-07 5.2E-12 80.0 8.2 87 21-137 196-283 (1027)
26 TIGR00054 RIP metalloprotease 98.6 9.1E-07 2E-11 75.2 11.6 59 75-135 204-263 (420)
27 TIGR00225 prc C-terminal pepti 98.6 6.2E-07 1.3E-11 74.0 10.2 61 74-134 62-123 (334)
28 TIGR01713 typeII_sec_gspC gene 98.6 6.3E-07 1.4E-11 71.5 9.9 74 60-135 177-252 (259)
29 PRK10942 serine endoprotease; 98.5 1.3E-06 2.9E-11 75.3 12.0 61 73-135 310-372 (473)
30 KOG4407|consensus 98.5 7.9E-08 1.7E-12 88.4 4.3 127 9-137 32-206 (1973)
31 KOG3580|consensus 98.5 5.2E-07 1.1E-11 78.0 8.4 95 20-135 6-100 (1027)
32 PRK10139 serine endoprotease; 98.5 8E-07 1.7E-11 76.3 9.1 60 74-135 390-449 (455)
33 PRK11186 carboxy-terminal prot 98.4 1.3E-06 2.9E-11 77.8 9.3 89 43-132 222-320 (667)
34 TIGR02038 protease_degS peripl 98.4 1.9E-06 4.1E-11 71.7 9.2 60 74-135 278-339 (351)
35 PRK10942 serine endoprotease; 98.4 1.8E-06 4E-11 74.4 9.2 60 74-135 408-467 (473)
36 TIGR02860 spore_IV_B stage IV 98.4 4E-06 8.6E-11 70.4 10.6 76 52-134 88-172 (402)
37 TIGR03279 cyano_FeS_chp putati 98.4 1.7E-06 3.7E-11 73.0 8.4 50 78-131 2-51 (433)
38 KOG0606|consensus 98.4 1.8E-06 4E-11 79.0 9.0 87 26-131 629-715 (1205)
39 KOG3542|consensus 98.4 9.8E-07 2.1E-11 77.3 6.9 85 22-131 534-618 (1283)
40 TIGR02037 degP_htrA_DO peripla 98.4 2.5E-06 5.4E-11 72.7 9.1 60 74-135 362-423 (428)
41 PRK10898 serine endoprotease; 98.3 3.3E-06 7.1E-11 70.3 9.2 60 74-135 279-340 (353)
42 PRK10779 zinc metallopeptidase 98.3 2.7E-06 5.8E-11 72.9 8.9 59 75-135 222-281 (449)
43 PRK10779 zinc metallopeptidase 98.3 2.3E-06 5E-11 73.4 7.9 58 76-135 128-187 (449)
44 KOG1892|consensus 98.2 4.8E-06 1E-10 75.3 7.9 87 24-134 934-1021(1629)
45 TIGR00054 RIP metalloprotease 98.1 1.3E-05 2.8E-10 68.2 7.5 58 74-133 128-185 (420)
46 PF04495 GRASP55_65: GRASP55/6 98.0 4.1E-05 9E-10 55.4 8.6 62 74-137 43-106 (138)
47 KOG0609|consensus 97.9 5.7E-05 1.2E-09 64.8 8.4 84 23-133 122-206 (542)
48 KOG3571|consensus 97.9 0.00018 3.9E-09 61.4 10.4 59 72-130 275-337 (626)
49 KOG3605|consensus 97.9 1.4E-05 3.1E-10 69.7 3.9 78 23-131 736-813 (829)
50 KOG3605|consensus 97.8 3.9E-05 8.4E-10 67.1 5.5 91 18-131 640-733 (829)
51 PF14685 Tricorn_PDZ: Tricorn 97.6 0.00043 9.3E-09 46.2 7.3 58 75-134 13-81 (88)
52 COG0265 DegQ Trypsin-like seri 97.5 0.00059 1.3E-08 56.6 8.9 61 73-135 269-331 (347)
53 KOG3129|consensus 97.5 0.00055 1.2E-08 52.3 7.0 62 75-136 140-203 (231)
54 KOG3938|consensus 97.3 0.00057 1.2E-08 54.1 5.8 83 22-132 125-210 (334)
55 KOG3532|consensus 97.3 0.0013 2.7E-08 58.3 8.0 57 73-131 397-453 (1051)
56 PRK09681 putative type II secr 97.1 0.0031 6.7E-08 50.7 7.8 55 79-135 209-268 (276)
57 COG3975 Predicted protease wit 97.0 0.0027 5.8E-08 54.8 7.3 50 75-132 463-512 (558)
58 KOG1320|consensus 96.4 0.015 3.2E-07 50.1 7.7 64 75-141 399-464 (473)
59 KOG1421|consensus 96.3 0.012 2.6E-07 52.4 6.6 57 76-135 305-362 (955)
60 COG3031 PulC Type II secretory 96.3 0.019 4.2E-07 45.0 6.9 60 75-136 208-269 (275)
61 PF12812 PDZ_1: PDZ-like domai 96.2 0.018 4E-07 37.4 5.8 46 76-123 32-77 (78)
62 COG3480 SdrC Predicted secrete 96.2 0.025 5.4E-07 46.1 7.3 57 74-133 130-188 (342)
63 KOG1738|consensus 94.4 0.065 1.4E-06 47.3 4.6 58 74-131 225-283 (638)
64 KOG3834|consensus 94.0 0.18 3.9E-06 42.8 6.2 61 74-135 15-76 (462)
65 COG0750 Predicted membrane-ass 93.2 0.43 9.4E-06 39.7 7.4 53 77-131 132-188 (375)
66 KOG3834|consensus 92.5 0.82 1.8E-05 38.9 8.0 53 76-131 111-166 (462)
67 KOG0792|consensus 87.7 0.54 1.2E-05 44.1 3.3 40 83-122 757-798 (1144)
68 KOG1421|consensus 87.1 3.7 8E-05 37.3 7.9 48 74-124 862-909 (955)
69 KOG2921|consensus 83.5 1.8 4E-05 36.6 4.2 45 74-120 220-265 (484)
70 PF11874 DUF3394: Domain of un 74.0 6.1 0.00013 30.0 4.1 29 74-102 122-150 (183)
71 KOG4371|consensus 72.9 4.6 0.0001 38.3 3.8 61 71-131 1267-1328(1332)
72 KOG4371|consensus 68.5 12 0.00026 35.7 5.4 46 91-136 1186-1231(1332)
73 COG5233 GRH1 Peripheral Golgi 64.7 4.7 0.0001 33.3 1.9 32 76-107 65-96 (417)
74 COG1625 Fe-S oxidoreductase, r 30.0 42 0.00092 28.7 2.3 33 77-109 4-37 (414)
75 KOG4060|consensus 28.4 1.6E+02 0.0036 21.6 4.8 91 39-131 56-152 (176)
76 KOG4407|consensus 25.4 30 0.00065 34.1 0.7 53 77-130 99-151 (1973)
77 PRK15464 cold shock-like prote 24.5 1.7E+02 0.0038 18.3 3.9 17 26-44 8-24 (70)
78 PRK13810 orotate phosphoribosy 21.7 2.3E+02 0.0049 21.4 4.8 34 92-125 119-152 (187)
79 TIGR01744 XPRTase xanthine pho 21.0 2.2E+02 0.0048 21.5 4.6 34 92-125 114-147 (191)
No 1
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.49 E-value=4.3e-13 Score=88.32 Aligned_cols=81 Identities=35% Similarity=0.518 Sum_probs=68.6
Q ss_pred EEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEEEECCEE
Q psy16403 26 NLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQT 105 (177)
Q Consensus 26 ~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~ 105 (177)
+|+|.|.. ..+|||.+... .... ..+++|..|.++|+|+++||+.||+|++|||.+
T Consensus 1 ~v~l~k~~-~~~lG~~l~~~-------------~~~~----------~~~~~V~~v~~~~~a~~~gl~~GD~Il~INg~~ 56 (81)
T PF00595_consen 1 QVTLEKSG-NGPLGFTLRGG-------------SDND----------EKGVFVSSVVPGSPAERAGLKVGDRILEINGQS 56 (81)
T ss_dssp EEEEEEST-TSBSSEEEEEE-------------STSS----------SEEEEEEEECTTSHHHHHTSSTTEEEEEETTEE
T ss_pred CEEEEeCC-CCCcCEEEEec-------------CCCC----------cCCEEEEEEeCCChHHhcccchhhhhheeCCEe
Confidence 47888853 59999999873 1110 136899999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHcCCCeEEEEEE
Q psy16403 106 IADLPYAEVVQLIQNSPAYLHLLVV 130 (177)
Q Consensus 106 v~~~~~~~~~~~l~~~~~~v~l~v~ 130 (177)
+.++++.+++.+++.+.+.+.|+|.
T Consensus 57 v~~~~~~~~~~~l~~~~~~v~L~V~ 81 (81)
T PF00595_consen 57 VRGMSHDEVVQLLKSASNPVTLTVQ 81 (81)
T ss_dssp STTSBHHHHHHHHHHSTSEEEEEEE
T ss_pred CCCCCHHHHHHHHHCCCCcEEEEEC
Confidence 9999999999999999888888763
No 2
>KOG3550|consensus
Probab=99.31 E-value=9.1e-12 Score=89.75 Aligned_cols=82 Identities=27% Similarity=0.481 Sum_probs=72.9
Q ss_pred CceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEEEE
Q psy16403 23 GPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAV 101 (177)
Q Consensus 23 ~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~I 101 (177)
-||.|.|-|.. .|+||.+-+ | .++..++||+++.||+.|++.| |+.||++++|
T Consensus 90 hprvvelpktd--eglgfnvmg-------------g-----------keqnspiyisriipggvadrhgglkrgdqllsv 143 (207)
T KOG3550|consen 90 HPRVVELPKTD--EGLGFNVMG-------------G-----------KEQNSPIYISRIIPGGVADRHGGLKRGDQLLSV 143 (207)
T ss_pred CCceeecCccc--cccceeecc-------------C-----------cccCCceEEEeecCCccccccCcccccceeEee
Confidence 47899999999 999999876 2 2344689999999999999987 9999999999
Q ss_pred CCEEcCCCCHHHHHHHHHcCCCeEEEEEE
Q psy16403 102 NNQTIADLPYAEVVQLIQNSPAYLHLLVV 130 (177)
Q Consensus 102 ng~~v~~~~~~~~~~~l~~~~~~v~l~v~ 130 (177)
||.++++..|+.++.+++...+++.|++.
T Consensus 144 ngvsvege~hekavellkaa~gsvklvvr 172 (207)
T KOG3550|consen 144 NGVSVEGEHHEKAVELLKAAVGSVKLVVR 172 (207)
T ss_pred cceeecchhhHHHHHHHHHhcCcEEEEEe
Confidence 99999999999999999998888887764
No 3
>KOG3209|consensus
Probab=99.27 E-value=1.9e-11 Score=106.09 Aligned_cols=87 Identities=34% Similarity=0.545 Sum_probs=75.6
Q ss_pred CCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEE
Q psy16403 21 QLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVV 99 (177)
Q Consensus 21 ~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~ 99 (177)
+..+..|.|+|.. +.||||.|..+. ..++.-|..|.+||||+++| |+.||+|+
T Consensus 751 ~~~~yDV~lhR~E-NeGFGFVi~sS~-------------------------~kp~sgiGrIieGSPAdRCgkLkVGDril 804 (984)
T KOG3209|consen 751 PSGPYDVVLHRKE-NEGFGFVIMSSQ-------------------------NKPESGIGRIIEGSPADRCGKLKVGDRIL 804 (984)
T ss_pred CCCCeeeEEeccc-CCceeEEEEecc-------------------------cCCCCCccccccCChhHhhccccccceEE
Confidence 4458999999998 899999987742 11223388999999999999 99999999
Q ss_pred EECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy16403 100 AVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 133 (177)
Q Consensus 100 ~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~ 133 (177)
+|||.++.+++|.+++++|+.++.+|+|+|+..+
T Consensus 805 AVNG~sI~~lsHadiv~LIKdaGlsVtLtIip~e 838 (984)
T KOG3209|consen 805 AVNGQSILNLSHADIVSLIKDAGLSVTLTIIPPE 838 (984)
T ss_pred EecCeeeeccCchhHHHHHHhcCceEEEEEcChh
Confidence 9999999999999999999999999999998754
No 4
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=99.26 E-value=2.1e-10 Score=75.18 Aligned_cols=80 Identities=36% Similarity=0.576 Sum_probs=65.3
Q ss_pred eEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEEEECCE
Q psy16403 25 RNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQ 104 (177)
Q Consensus 25 r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~ 104 (177)
+.+.+.+.. ..+|||.+... .. ...+++|..|.++|+|+++||+.||+|++|||.
T Consensus 2 ~~~~l~~~~-~~~~G~~~~~~-------------~~-----------~~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~ 56 (82)
T cd00992 2 RTVTLRKDP-GGGLGFSLRGG-------------KD-----------SGGGIFVSRVEPGGPAERGGLRVGDRILEVNGV 56 (82)
T ss_pred EEEEEEeCC-CCCcCEEEeCc-------------cc-----------CCCCeEEEEECCCChHHhCCCCCCCEEEEECCE
Confidence 567888874 48899998762 11 023689999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHcCCCeEEEEE
Q psy16403 105 TIADLPYAEVVQLIQNSPAYLHLLV 129 (177)
Q Consensus 105 ~v~~~~~~~~~~~l~~~~~~v~l~v 129 (177)
++.+++++++...++.....+.+++
T Consensus 57 ~i~~~~~~~~~~~l~~~~~~v~l~v 81 (82)
T cd00992 57 SVEGLTHEEAVELLKNSGDEVTLTV 81 (82)
T ss_pred EcCccCHHHHHHHHHhCCCeEEEEE
Confidence 9999999999999987666666554
No 5
>KOG3209|consensus
Probab=99.18 E-value=1.6e-10 Score=100.45 Aligned_cols=83 Identities=24% Similarity=0.446 Sum_probs=71.1
Q ss_pred CCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEEE
Q psy16403 22 LGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVA 100 (177)
Q Consensus 22 ~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~ 100 (177)
..-.+|.|.|+. +||||+|++ |..| ..++||.++..++||.+.| |+.||+|++
T Consensus 897 ~~~~~VelErG~--kGFGFSiRG-------------Grey-----------nM~LfVLRlAeDGPA~rdGrm~VGDqi~e 950 (984)
T KOG3209|consen 897 GDLYTVELERGA--KGFGFSIRG-------------GREY-----------NMDLFVLRLAEDGPAIRDGRMRVGDQITE 950 (984)
T ss_pred CCeeEEEeeccc--cccceEeec-------------cccc-----------ccceEEEEeccCCCccccCceeecceEEE
Confidence 345889999999 999999998 3332 2468999999999999999 999999999
Q ss_pred ECCEEcCCCCHHHHHHHHHcCCCeEEEEEE
Q psy16403 101 VNNQTIADLPYAEVVQLIQNSPAYLHLLVV 130 (177)
Q Consensus 101 Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~ 130 (177)
|||.+.++++|+.++++|++.+..+.+.+.
T Consensus 951 INGesTkgmtH~rAIelIk~gg~~vll~Lr 980 (984)
T KOG3209|consen 951 INGESTKGMTHDRAIELIKQGGRRVLLLLR 980 (984)
T ss_pred ecCcccCCCcHHHHHHHHHhCCeEEEEEec
Confidence 999999999999999999986666555443
No 6
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=99.18 E-value=1.4e-09 Score=71.45 Aligned_cols=82 Identities=30% Similarity=0.463 Sum_probs=65.7
Q ss_pred eEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEEEECCE
Q psy16403 25 RNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQ 104 (177)
Q Consensus 25 r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~ 104 (177)
..+.+.+.. ..|||.+... . ....+++|..|.++++|+++||++||+|++|||.
T Consensus 3 ~~~~~~~~~--~~~G~~~~~~-------------~-----------~~~~~~~i~~v~~~s~a~~~gl~~GD~I~~In~~ 56 (85)
T smart00228 3 RLVELEKGG--GGLGFSLVGG-------------K-----------DEGGGVVVSSVVPGSPAAKAGLKVGDVILEVNGT 56 (85)
T ss_pred EEEEEEECC--CcccEEEECC-------------C-----------CCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCE
Confidence 456777776 7888887651 1 1114689999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy16403 105 TIADLPYAEVVQLIQNSPAYLHLLVVPK 132 (177)
Q Consensus 105 ~v~~~~~~~~~~~l~~~~~~v~l~v~~~ 132 (177)
.+.++++.+....+...+..+.+++.|+
T Consensus 57 ~v~~~~~~~~~~~~~~~~~~~~l~i~r~ 84 (85)
T smart00228 57 SVEGLTHLEAVDLLKKAGGKVTLTVLRG 84 (85)
T ss_pred ECCCCCHHHHHHHHHhCCCeEEEEEEeC
Confidence 9998888888888877666788887764
No 7
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=99.16 E-value=6.7e-10 Score=73.26 Aligned_cols=61 Identities=30% Similarity=0.536 Sum_probs=52.8
Q ss_pred CceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCcce
Q psy16403 74 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKENDL 136 (177)
Q Consensus 74 ~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~~~~~~~ 136 (177)
.+++|..|.++|||+++||+.||+|++|||.++. +..++...+.. .+.++.+++.|.+...
T Consensus 14 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~--~~~~~~~~l~~~~~g~~v~l~v~R~g~~~ 76 (82)
T PF13180_consen 14 GGVVVVSVIPGSPAAKAGLQPGDIILAINGKPVN--SSEDLVNILSKGKPGDTVTLTVLRDGEEL 76 (82)
T ss_dssp SSEEEEEESTTSHHHHTTS-TTEEEEEETTEESS--SHHHHHHHHHCSSTTSEEEEEEEETTEEE
T ss_pred CeEEEEEeCCCCcHHHCCCCCCcEEEEECCEEcC--CHHHHHHHHHhCCCCCEEEEEEEECCEEE
Confidence 4789999999999999999999999999999998 88999998864 4678999999966543
No 8
>KOG3549|consensus
Probab=99.03 E-value=1.1e-09 Score=88.60 Aligned_cols=87 Identities=25% Similarity=0.440 Sum_probs=76.7
Q ss_pred CCCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCE
Q psy16403 19 SQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDR 97 (177)
Q Consensus 19 ~~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~ 97 (177)
.+..+.|+|+|.|-+ ..|+|++|.+ | .+..-+++|+.+..+-.|+..| |-.||.
T Consensus 50 p~~s~eRtVtirRQ~-vGGlGLSIKG-------------G-----------aEHn~PvviSkI~kdQaAd~tG~LFvGDA 104 (505)
T KOG3549|consen 50 PMESKERTVTIRRQK-VGGLGLSIKG-------------G-----------AEHNLPVVISKIYKDQAADITGQLFVGDA 104 (505)
T ss_pred CccCCceeEEEEeee-cCcceeeecc-------------c-----------cccCccEEeehhhhhhhhhhcCceEeeee
Confidence 345678999999988 7899999987 2 2233478999999999999999 999999
Q ss_pred EEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEE
Q psy16403 98 VVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 130 (177)
Q Consensus 98 I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~ 130 (177)
|++|||+.+..+.|+|++++++++|+.++|+|.
T Consensus 105 ilqvNGi~v~~c~HeevV~iLRNAGdeVtlTV~ 137 (505)
T KOG3549|consen 105 ILQVNGIYVTACPHEEVVNILRNAGDEVTLTVK 137 (505)
T ss_pred eEEeccEEeecCChHHHHHHHHhcCCEEEEEeH
Confidence 999999999999999999999999999999884
No 9
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=99.02 E-value=4.2e-09 Score=66.98 Aligned_cols=55 Identities=33% Similarity=0.549 Sum_probs=49.0
Q ss_pred ceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC-CeEEEEE
Q psy16403 75 TIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP-AYLHLLV 129 (177)
Q Consensus 75 ~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~-~~v~l~v 129 (177)
+++|..|.+++||+.+||++||+|++|||.++.+.+++++...++... ..+.|++
T Consensus 14 ~~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 14 GVVVLSVEPGSPAERAGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 689999999999999999999999999999999777799999998765 5677655
No 10
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.01 E-value=5e-09 Score=68.65 Aligned_cols=60 Identities=22% Similarity=0.346 Sum_probs=52.4
Q ss_pred CceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCcc
Q psy16403 74 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKEND 135 (177)
Q Consensus 74 ~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~--~~~v~l~v~~~~~~ 135 (177)
.++.|..|.++|+|+++||+.||+|++|||.++. ++.++...+... +..+.+++.|++..
T Consensus 10 ~Gv~V~~V~~~spa~~aGL~~GDiI~~Ing~~v~--~~~d~~~~l~~~~~g~~v~l~v~r~g~~ 71 (79)
T cd00991 10 AGVVIVGVIVGSPAENAVLHTGDVIYSINGTPIT--TLEDFMEALKPTKPGEVITVTVLPSTTK 71 (79)
T ss_pred CcEEEEEECCCChHHhcCCCCCCEEEEECCEEcC--CHHHHHHHHhcCCCCCEEEEEEEECCEE
Confidence 4789999999999999999999999999999999 899999998764 56788888876543
No 11
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.95 E-value=2.6e-08 Score=65.68 Aligned_cols=59 Identities=31% Similarity=0.517 Sum_probs=50.7
Q ss_pred CceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHc-CCCeEEEEEEeC
Q psy16403 74 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN-SPAYLHLLVVPK 132 (177)
Q Consensus 74 ~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~-~~~~v~l~v~~~ 132 (177)
.+++|..|.++++|+++||++||+|++|||.++.+.++.++...+.. .+..+.+++.+.
T Consensus 13 ~~~~V~~v~~~s~a~~~gl~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~ 72 (85)
T cd00988 13 GGLVITSVLPGSPAAKAGIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG 72 (85)
T ss_pred CeEEEEEecCCCCHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence 46899999999999999999999999999999996555899888865 356688888876
No 12
>KOG3606|consensus
Probab=98.90 E-value=6e-09 Score=81.87 Aligned_cols=110 Identities=22% Similarity=0.282 Sum_probs=87.9
Q ss_pred CCCCCCcCCCCCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeee-eccCCCCceEEEeeCCCCHHh
Q psy16403 10 NEAPRIKKSSQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSR-CMDEPMDTIFIKHVRPHSPAA 88 (177)
Q Consensus 10 ~~~~~~~~~~~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~-~~~~~~~~~~V~~V~~gs~A~ 88 (177)
..+.-++-+..+...|+|.|+|.+..+++||-|+-. . .+++. .|.+..+|+||+++.||+.|+
T Consensus 145 qVSsIIDVDivPEtHRRVRL~khG~ekPLGFYIRDG--------------~--SVRVtp~GlekvpGIFISRlVpGGLAe 208 (358)
T KOG3606|consen 145 QVSSIIDVDIVPETHRRVRLHKHGSEKPLGFYIRDG--------------T--SVRVTPHGLEKVPGIFISRLVPGGLAE 208 (358)
T ss_pred eeceeeeecccchhhhheehhhcCCCCCceEEEecC--------------c--eEEeccccccccCceEEEeecCCcccc
Confidence 334445555667778999999988778999999861 1 11121 245567899999999999999
Q ss_pred HcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Q psy16403 89 AAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135 (177)
Q Consensus 89 ~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~ 135 (177)
..| |..+|.+++|||+.|.+.+.+++..++-.....+.++|.+.++.
T Consensus 209 STGLLaVnDEVlEVNGIEVaGKTLDQVTDMMvANshNLIiTVkPANQR 256 (358)
T KOG3606|consen 209 STGLLAVNDEVLEVNGIEVAGKTLDQVTDMMVANSHNLIITVKPANQR 256 (358)
T ss_pred ccceeeecceeEEEcCEEeccccHHHHHHHHhhcccceEEEecccccc
Confidence 999 89999999999999999999999999988888888888765554
No 13
>KOG3551|consensus
Probab=98.89 E-value=5.9e-09 Score=85.48 Aligned_cols=82 Identities=24% Similarity=0.373 Sum_probs=72.2
Q ss_pred ceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEEEEC
Q psy16403 24 PRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVN 102 (177)
Q Consensus 24 ~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~In 102 (177)
.|+|++.|-. ..|+|++|.+ | .++..++.|+.+.+|-.|++++ |..||.|++||
T Consensus 85 ~R~V~V~K~d-~gGLGISIKG-------------G-----------reNkMPIlISKIFkGlAADQt~aL~~gDaIlSVN 139 (506)
T KOG3551|consen 85 ERRVRVVKQD-AGGLGISIKG-------------G-----------RENKMPILISKIFKGLAADQTGALFLGDAILSVN 139 (506)
T ss_pred cceeEEEEec-CCcceEEeec-------------C-----------cccCCceehhHhccccccccccceeeccEEEEec
Confidence 4889998887 6899999997 2 3334589999999999999999 99999999999
Q ss_pred CEEcCCCCHHHHHHHHHcCCCeEEEEEE
Q psy16403 103 NQTIADLPYAEVVQLIQNSPAYLHLLVV 130 (177)
Q Consensus 103 g~~v~~~~~~~~~~~l~~~~~~v~l~v~ 130 (177)
|.++.+.+|+++++.++..++.+.+.|.
T Consensus 140 G~dL~~AtHdeAVqaLKraGkeV~levK 167 (506)
T KOG3551|consen 140 GEDLRDATHDEAVQALKRAGKEVLLEVK 167 (506)
T ss_pred chhhhhcchHHHHHHHHhhCceeeeeee
Confidence 9999999999999999999998877764
No 14
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.88 E-value=2.8e-08 Score=64.58 Aligned_cols=58 Identities=38% Similarity=0.539 Sum_probs=50.4
Q ss_pred ceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC-CCeEEEEEEeCCc
Q psy16403 75 TIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS-PAYLHLLVVPKEN 134 (177)
Q Consensus 75 ~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~~~~~ 134 (177)
++.|..|.++|+|+++||+.||+|++|||.++. ++.++...+... +..+.+++.|++.
T Consensus 13 ~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~--~~~~~~~~l~~~~~~~~~l~v~r~~~ 71 (79)
T cd00989 13 EPVIGEVVPGSPAAKAGLKAGDRILAINGQKIK--SWEDLVDAVQENPGKPLTLTVERNGE 71 (79)
T ss_pred CcEEEeECCCCHHHHcCCCCCCEEEEECCEECC--CHHHHHHHHHHCCCceEEEEEEECCE
Confidence 478999999999999999999999999999999 888998888764 5668888877553
No 15
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.82 E-value=5e-08 Score=64.85 Aligned_cols=59 Identities=31% Similarity=0.494 Sum_probs=51.4
Q ss_pred CceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCc
Q psy16403 74 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKEN 134 (177)
Q Consensus 74 ~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~--~~~v~l~v~~~~~ 134 (177)
.+++|..|.++++|+++||+.||+|++|||.++. ++.++...+... +..+.+.+.|++.
T Consensus 24 ~g~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~i~--~~~~~~~~l~~~~~~~~i~l~v~r~g~ 84 (90)
T cd00987 24 KGVLVASVDPGSPAAKAGLKPGDVILAVNGKPVK--SVADLRRALAELKPGDKVTLTVLRGGK 84 (90)
T ss_pred CEEEEEEECCCCHHHHcCCCcCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 4689999999999999999999999999999999 888888888764 6678888887653
No 16
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=98.78 E-value=7.7e-08 Score=80.96 Aligned_cols=91 Identities=19% Similarity=0.249 Sum_probs=68.5
Q ss_pred ceeecCchhhhh---hcCCcccceeeeeccCCC-----CceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHH
Q psy16403 44 HFIVYPPESYTV---LAGDRRLGLRSRCMDEPM-----DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVV 115 (177)
Q Consensus 44 ~~~~~~~~~~~~---~~g~~~~g~~~~~~~~~~-----~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~ 115 (177)
++.++.+.++.. ...+.+.|+++.+..... .+++|..|.++|||+++||+.||+|++|||+++.+.++.++.
T Consensus 64 hs~y~~~~~~~~~~~~~~~~~~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aGl~~GD~Iv~InG~~v~~~~~~~~~ 143 (389)
T PLN00049 64 FTRFLEPEKFKSLRSGTKGAVTGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAGIRPGDVILAIDGTSTEGLSLYEAA 143 (389)
T ss_pred cccCcCHHHHHHHHHhccCCceEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHH
Confidence 344666666553 335667777776543221 268999999999999999999999999999999987888888
Q ss_pred HHHHc-CCCeEEEEEEeCCc
Q psy16403 116 QLIQN-SPAYLHLLVVPKEN 134 (177)
Q Consensus 116 ~~l~~-~~~~v~l~v~~~~~ 134 (177)
..++. .+..+.+++.+.+.
T Consensus 144 ~~l~g~~g~~v~ltv~r~g~ 163 (389)
T PLN00049 144 DRLQGPEGSSVELTLRRGPE 163 (389)
T ss_pred HHHhcCCCCEEEEEEEECCE
Confidence 88865 45678888887543
No 17
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=98.78 E-value=4.8e-08 Score=82.51 Aligned_cols=90 Identities=21% Similarity=0.310 Sum_probs=72.8
Q ss_pred ceeecCchhhhh---hcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHc
Q psy16403 44 HFIVYPPESYTV---LAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN 120 (177)
Q Consensus 44 ~~~~~~~~~~~~---~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~ 120 (177)
++.++.|+.+.. ...+++.|+++.+.......+.|.++.+++||+++|+++||+|++|||.++.+++.++++..++.
T Consensus 79 ~s~y~~~e~~~~~~~~~~~~~~GiG~~i~~~~~~~~~V~s~~~~~PA~kagi~~GD~I~~IdG~~~~~~~~~~av~~irG 158 (406)
T COG0793 79 HSTYLDPEDAAEFRTDTSGEFGGIGIELQMEDIGGVKVVSPIDGSPAAKAGIKPGDVIIKIDGKSVGGVSLDEAVKLIRG 158 (406)
T ss_pred cccccCHHHHHHhhhhccccccceeEEEEEecCCCcEEEecCCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHhCC
Confidence 345566666555 33567778777765544467899999999999999999999999999999999998899999987
Q ss_pred C-CCeEEEEEEeCC
Q psy16403 121 S-PAYLHLLVVPKE 133 (177)
Q Consensus 121 ~-~~~v~l~v~~~~ 133 (177)
. +..+.|++.|.+
T Consensus 159 ~~Gt~V~L~i~r~~ 172 (406)
T COG0793 159 KPGTKVTLTILRAG 172 (406)
T ss_pred CCCCeEEEEEEEcC
Confidence 5 566999999963
No 18
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.76 E-value=8.8e-08 Score=62.43 Aligned_cols=58 Identities=29% Similarity=0.377 Sum_probs=46.6
Q ss_pred CceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 74 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 74 ~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
.++.|..|.++|+|+++||++||+|++|||.++. ++.++...+ ..+..+.+++.|++.
T Consensus 12 ~~~~V~~V~~~s~a~~aGl~~GD~I~~Ing~~v~--~~~~~l~~~-~~~~~v~l~v~r~g~ 69 (80)
T cd00990 12 GLGKVTFVRDDSPADKAGLVAGDELVAVNGWRVD--ALQDRLKEY-QAGDPVELTVFRDDR 69 (80)
T ss_pred CcEEEEEECCCChHHHhCCCCCCEEEEECCEEhH--HHHHHHHhc-CCCCEEEEEEEECCE
Confidence 3589999999999999999999999999999998 465554443 245678888887553
No 19
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.73 E-value=1.3e-07 Score=61.73 Aligned_cols=59 Identities=25% Similarity=0.429 Sum_probs=49.9
Q ss_pred CceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCcc
Q psy16403 74 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKEND 135 (177)
Q Consensus 74 ~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~~~~~~ 135 (177)
.++.|..|.++|+|+. ||+.||+|++|||.++. +++++...+.. .+..+.+++.|.+..
T Consensus 8 ~Gv~V~~V~~~s~A~~-gL~~GD~I~~Ing~~v~--~~~~~~~~l~~~~~~~~v~l~v~r~g~~ 68 (79)
T cd00986 8 HGVYVTSVVEGMPAAG-KLKAGDHIIAVDGKPFK--EAEELIDYIQSKKEGDTVKLKVKREEKE 68 (79)
T ss_pred cCEEEEEECCCCchhh-CCCCCCEEEEECCEECC--CHHHHHHHHHhCCCCCEEEEEEEECCEE
Confidence 3688999999999987 79999999999999999 89999988874 356788888876543
No 20
>PRK10139 serine endoprotease; Provisional
Probab=98.72 E-value=2.4e-07 Score=79.40 Aligned_cols=99 Identities=19% Similarity=0.292 Sum_probs=69.7
Q ss_pred CCceeEEEeceeecCchhhhh---hcCCcccceeee---------eccCCCCceEEEeeCCCCHHhHcCCCCCCEEEEEC
Q psy16403 35 LNGFGFTLRHFIVYPPESYTV---LAGDRRLGLRSR---------CMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVN 102 (177)
Q Consensus 35 ~~~~Gf~l~~~~~~~~~~~~~---~~g~~~~g~~~~---------~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~In 102 (177)
..++||.|....+....+... .+...+.|+.+. ++.....+++|..|.++|||+++||+.||+|++||
T Consensus 239 ~~gigfaIP~~~~~~v~~~l~~~g~v~r~~LGv~~~~l~~~~~~~lgl~~~~Gv~V~~V~~~SpA~~AGL~~GDvIl~In 318 (455)
T PRK10139 239 SVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPNSGSAKAGVKAGDIITSLN 318 (455)
T ss_pred ccceEEEEEhHHHHHHHHHHhhcCcccccceeEEEEECCHHHHHhcCCCCCCceEEEEECCCChHHHCCCCCCCEEEEEC
Confidence 357788877644332222211 122334555443 11122458999999999999999999999999999
Q ss_pred CEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCcc
Q psy16403 103 NQTIADLPYAEVVQLIQN--SPAYLHLLVVPKEND 135 (177)
Q Consensus 103 g~~v~~~~~~~~~~~l~~--~~~~v~l~v~~~~~~ 135 (177)
|+++. ++.++...+.. .++.+.+++.|++..
T Consensus 319 G~~V~--s~~dl~~~l~~~~~g~~v~l~V~R~G~~ 351 (455)
T PRK10139 319 GKPLN--SFAELRSRIATTEPGTKVKLGLLRNGKP 351 (455)
T ss_pred CEECC--CHHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 99999 89999988864 467788999886644
No 21
>KOG3553|consensus
Probab=98.69 E-value=3.5e-08 Score=66.46 Aligned_cols=48 Identities=27% Similarity=0.371 Sum_probs=45.1
Q ss_pred CCceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHc
Q psy16403 73 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN 120 (177)
Q Consensus 73 ~~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~ 120 (177)
+.+++|..|..||||+.|||+.+|.|++|||.+..-++|+.+++.|+.
T Consensus 58 D~GiYvT~V~eGsPA~~AGLrihDKIlQvNG~DfTMvTHd~Avk~i~k 105 (124)
T KOG3553|consen 58 DKGIYVTRVSEGSPAEIAGLRIHDKILQVNGWDFTMVTHDQAVKRITK 105 (124)
T ss_pred CccEEEEEeccCChhhhhcceecceEEEecCceeEEEEhHHHHHHhhH
Confidence 468999999999999999999999999999999988899999999875
No 22
>KOG3651|consensus
Probab=98.60 E-value=3.7e-07 Score=73.00 Aligned_cols=84 Identities=24% Similarity=0.289 Sum_probs=71.0
Q ss_pred CceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEEEE
Q psy16403 23 GPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAV 101 (177)
Q Consensus 23 ~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~I 101 (177)
.+-+|+|+|.. .+-.|++|.+ |...++.++|..|..++||++.| ++.||.|++|
T Consensus 4 ~~~~v~ltKD~-~nliGISIGG------------------------GapyCPClYiVQvFD~tPAa~dG~i~~GDEi~av 58 (429)
T KOG3651|consen 4 QSETVELTKDE-KNLIGISIGG------------------------GAPYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAV 58 (429)
T ss_pred ccCcEEEeecc-ccceeEEecC------------------------CCCcCCeEEEEEeccCCchhccCccccCCeeEEe
Confidence 34568888887 4566888876 34456778999999999999999 9999999999
Q ss_pred CCEEcCCCCHHHHHHHHHcCCCeEEEEEEe
Q psy16403 102 NNQTIADLPYAEVVQLIQNSPAYLHLLVVP 131 (177)
Q Consensus 102 ng~~v~~~~~~~~~~~l~~~~~~v~l~v~~ 131 (177)
||+.+++.+..++.++|+...+.+.+.+..
T Consensus 59 Ng~svKGktKveVAkmIQ~~~~eV~IhyNK 88 (429)
T KOG3651|consen 59 NGISVKGKTKVEVAKMIQVSLNEVKIHYNK 88 (429)
T ss_pred cceeecCccHHHHHHHHHHhccceEEEehh
Confidence 999999999999999999888888887753
No 23
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=98.59 E-value=6.6e-07 Score=76.18 Aligned_cols=61 Identities=28% Similarity=0.463 Sum_probs=53.2
Q ss_pred CCceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCcc
Q psy16403 73 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKEND 135 (177)
Q Consensus 73 ~~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~~~~~~ 135 (177)
..+++|..|.++|||+++||+.||+|++|||+++. ++.++...+.. .+..+.+++.|++..
T Consensus 256 ~~Gv~V~~V~~~spA~~aGL~~GDvI~~Vng~~i~--~~~~~~~~l~~~~~g~~v~l~v~R~g~~ 318 (428)
T TIGR02037 256 QRGALVAQVLPGSPAEKAGLKAGDVILSVNGKPIS--SFADLRRAIGTLKPGKKVTLGILRKGKE 318 (428)
T ss_pred CCceEEEEccCCCChHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 36899999999999999999999999999999999 88888888765 357789999886644
No 24
>KOG3552|consensus
Probab=98.58 E-value=8.5e-08 Score=85.89 Aligned_cols=80 Identities=30% Similarity=0.569 Sum_probs=68.6
Q ss_pred CCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEE
Q psy16403 20 QQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVV 99 (177)
Q Consensus 20 ~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~ 99 (177)
-|+ ||.|.+.|.. .-||||.-. .+++|..|.+|+|+.-- |++||+|+
T Consensus 53 ~~~-pr~vq~~r~~-~lGFgfvag------------------------------rPviVr~VT~GGps~GK-L~PGDQIl 99 (1298)
T KOG3552|consen 53 RWE-PRQVQLQRNA-SLGFGFVAG------------------------------RPVIVRFVTEGGPSIGK-LQPGDQIL 99 (1298)
T ss_pred cCc-chhhhhhccc-cccceeecC------------------------------CceEEEEecCCCCcccc-ccCCCeEE
Confidence 455 8999999877 567777532 36899999999998722 99999999
Q ss_pred EECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy16403 100 AVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK 132 (177)
Q Consensus 100 ~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~ 132 (177)
.|||.++++..|+.++.+++.+...+.|+|++.
T Consensus 100 ~vN~Epv~daprervIdlvRace~sv~ltV~qP 132 (1298)
T KOG3552|consen 100 AVNGEPVKDAPRERVIDLVRACESSVNLTVCQP 132 (1298)
T ss_pred EecCcccccccHHHHHHHHHHHhhhcceEEecc
Confidence 999999999999999999999999999999875
No 25
>KOG3580|consensus
Probab=98.57 E-value=2.4e-07 Score=80.01 Aligned_cols=87 Identities=28% Similarity=0.489 Sum_probs=75.3
Q ss_pred CCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEE
Q psy16403 21 QLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVV 99 (177)
Q Consensus 21 ~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~ 99 (177)
.++|-.++|.|...+..||+.|.. .+||..+...+.|++.| |+.||.|+
T Consensus 196 ~~~p~kv~LvKsR~nEEyGlrLgS------------------------------qIFvKeit~~gLAardgnlqEGDiiL 245 (1027)
T KOG3580|consen 196 RPGPIKVLLVKSRANEEYGLRLGS------------------------------QIFVKEITRTGLAARDGNLQEGDIIL 245 (1027)
T ss_pred CCCcceEEEEeeccchhhcccccc------------------------------hhhhhhhcccchhhccCCcccccEEE
Confidence 344566888887767899988764 47999999999999988 99999999
Q ss_pred EECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCccee
Q psy16403 100 AVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDLL 137 (177)
Q Consensus 100 ~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~~~ 137 (177)
+|||....+++..+...+|..+..++.|+|+|+.+..+
T Consensus 246 kINGtvteNmSLtDar~LIEkS~GKL~lvVlRD~~qtL 283 (1027)
T KOG3580|consen 246 KINGTVTENMSLTDARKLIEKSRGKLQLVVLRDSQQTL 283 (1027)
T ss_pred EECcEeeccccchhHHHHHHhccCceEEEEEecCCcee
Confidence 99999999999999999999999999999999876654
No 26
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=98.57 E-value=9.1e-07 Score=75.20 Aligned_cols=59 Identities=22% Similarity=0.436 Sum_probs=51.6
Q ss_pred ceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC-CCeEEEEEEeCCcc
Q psy16403 75 TIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS-PAYLHLLVVPKEND 135 (177)
Q Consensus 75 ~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~~~~~~ 135 (177)
++.|..|.++|||+++||++||+|++|||+++. +++++...++.. ++.+.+++.|++..
T Consensus 204 g~vV~~V~~~SpA~~aGL~~GD~Iv~Vng~~V~--s~~dl~~~l~~~~~~~v~l~v~R~g~~ 263 (420)
T TIGR00054 204 EPVLSDVTPNSPAEKAGLKEGDYIQSINGEKLR--SWTDFVSAVKENPGKSMDIKVERNGET 263 (420)
T ss_pred CcEEEEECCCCHHHHcCCCCCCEEEEECCEECC--CHHHHHHHHHhCCCCceEEEEEECCEE
Confidence 578999999999999999999999999999999 899999998764 45688888886643
No 27
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=98.56 E-value=6.2e-07 Score=74.02 Aligned_cols=61 Identities=26% Similarity=0.475 Sum_probs=51.3
Q ss_pred CceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHc-CCCeEEEEEEeCCc
Q psy16403 74 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN-SPAYLHLLVVPKEN 134 (177)
Q Consensus 74 ~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~-~~~~v~l~v~~~~~ 134 (177)
.+++|..|.++|||+++||+.||+|++|||.++.+.+..++...+.. .+..+.+++.|.+.
T Consensus 62 ~~~~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~ 123 (334)
T TIGR00225 62 GEIVIVSPFEGSPAEKAGIKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAGK 123 (334)
T ss_pred CEEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCCC
Confidence 36889999999999999999999999999999996666777777754 46678888888653
No 28
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=98.56 E-value=6.3e-07 Score=71.46 Aligned_cols=74 Identities=19% Similarity=0.169 Sum_probs=58.9
Q ss_pred cccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCcc
Q psy16403 60 RRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKEND 135 (177)
Q Consensus 60 ~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~--~~~v~l~v~~~~~~ 135 (177)
.+.|+.....+....|+.|..+.++++|+++||+.||+|++|||+++. +++++.+++... ++.+.+++.|++..
T Consensus 177 ~~lgi~p~~~~g~~~G~~v~~v~~~s~a~~aGLr~GDvIv~ING~~i~--~~~~~~~~l~~~~~~~~v~l~V~R~G~~ 252 (259)
T TIGR01713 177 DYIRLSPVMKNDKLEGYRLNPGKDPSLFYKSGLQDGDIAVALNGLDLR--DPEQAFQALQMLREETNLTLTVERDGQR 252 (259)
T ss_pred heEeEEEEEeCCceeEEEEEecCCCCHHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCeEEEEEEECCEE
Confidence 345555443333346899999999999999999999999999999999 888988888763 46789999886543
No 29
>PRK10942 serine endoprotease; Provisional
Probab=98.54 E-value=1.3e-06 Score=75.27 Aligned_cols=61 Identities=25% Similarity=0.395 Sum_probs=53.3
Q ss_pred CCceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCcc
Q psy16403 73 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKEND 135 (177)
Q Consensus 73 ~~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~--~~~v~l~v~~~~~~ 135 (177)
..+++|..|.++|||+++||+.||+|++|||+++. ++.++...+... +..+.+++.|++..
T Consensus 310 ~~GvlV~~V~~~SpA~~AGL~~GDvIl~InG~~V~--s~~dl~~~l~~~~~g~~v~l~v~R~G~~ 372 (473)
T PRK10942 310 QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPIS--SFAALRAQVGTMPVGSKLTLGLLRDGKP 372 (473)
T ss_pred CCceEEEEECCCChHHHcCCCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCeE
Confidence 35899999999999999999999999999999999 899998888653 56788999886644
No 30
>KOG4407|consensus
Probab=98.52 E-value=7.9e-08 Score=88.41 Aligned_cols=127 Identities=44% Similarity=0.650 Sum_probs=94.1
Q ss_pred CCCCCCCcCCCCCCCceEEEEecCCCCCceeEEEeceeecCchhhhh------hcCCcc---------------------
Q psy16403 9 ENEAPRIKKSSQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTV------LAGDRR--------------------- 61 (177)
Q Consensus 9 ~~~~~~~~~~~~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~------~~g~~~--------------------- 61 (177)
++.+-.....+.|..+.+|++.|.. .||||+|++.++|+|++... ++++..
T Consensus 32 ~aan~a~~~a~S~~~~~~V~~rR~n--QGFGFTLRHFIaYPPEd~~a~Ss~sG~~~Gsa~~~~~~~~s~~~~Q~~s~~~~ 109 (1973)
T KOG4407|consen 32 AAANNAALAASSIQPKLIVIRRRPN--QGFGFTLRHFIAYPPEDDQASSSASGLVSGSATAATAASVSTNWPQEASSAAG 109 (1973)
T ss_pred HhhhhhhhhhccCCCceEEEEecCC--CCcceeeeeeeecCchhhhhhhhhccccccchhcccccccccccchhcccCcc
Confidence 4444445556778888989988888 99999999999999999885 111110
Q ss_pred ------cceeee--eccCC-------------CCceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHc
Q psy16403 62 ------LGLRSR--CMDEP-------------MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN 120 (177)
Q Consensus 62 ------~g~~~~--~~~~~-------------~~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~ 120 (177)
.+.++- -|.+. ...++|..|.++++|..+.|+.||.++.||..++.++...+++..+++
T Consensus 110 ~nsG~~s~~~v~~itG~e~~~~TS~~~~~vk~~eT~~~~eV~~n~~~~~a~LQ~~~~V~~v~~q~~A~i~~s~~~S~~~q 189 (1973)
T KOG4407|consen 110 SNSGSSSSVGVAGITGLEPTSPTSLPPYQVKAMETIFIKEVQANGPAHYANLQTGDRVLMVNNQPIAGIAYSTIVSMIKQ 189 (1973)
T ss_pred cccCcccccceeeecccccCCCccccHHHHhhhhhhhhhhhccCChhHHHhhhccceeEEeecCcccchhhhhhhhhhcc
Confidence 011000 01111 124678889999999999999999999999999999999999999998
Q ss_pred CCCeEEEEEEeCCccee
Q psy16403 121 SPAYLHLLVVPKENDLL 137 (177)
Q Consensus 121 ~~~~v~l~v~~~~~~~~ 137 (177)
....+.+.+++.....+
T Consensus 190 t~~~~~~~~~P~~~dv~ 206 (1973)
T KOG4407|consen 190 TPAVLTLHVVPKECDVL 206 (1973)
T ss_pred CCCCCCceeccccCchH
Confidence 88877787777665544
No 31
>KOG3580|consensus
Probab=98.50 E-value=5.2e-07 Score=77.97 Aligned_cols=95 Identities=24% Similarity=0.313 Sum_probs=76.6
Q ss_pred CCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEE
Q psy16403 20 QQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVV 99 (177)
Q Consensus 20 ~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~ 99 (177)
.|.. .+++|.|.+ ..|||+.|.+ |.+..++ ......++|..|.||+||+-. |+.||.|+
T Consensus 6 IWEQ-hTvTL~kdp-~rGFGIAiSG-------------GRDnPhf-----~~getSiViSDVlpGGPAeG~-LQenDrvv 64 (1027)
T KOG3580|consen 6 IWEQ-HTVTLQKDP-KRGFGIAISG-------------GRDNPHF-----ENGETSIVISDVLPGGPAEGL-LQENDRVV 64 (1027)
T ss_pred hhhh-heeeeecCC-CCcceeEeec-------------CCCCCCc-----cCCceeEEEeeccCCCCcccc-cccCCeEE
Confidence 4665 789999988 6789998887 5554443 222345899999999999833 99999999
Q ss_pred EECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Q psy16403 100 AVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135 (177)
Q Consensus 100 ~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~ 135 (177)
-|||+++.+..|.=+++.|+.+++...++|.|...-
T Consensus 65 MVNGvsMenv~haFAvQqLrksgK~A~ItvkRprkv 100 (1027)
T KOG3580|consen 65 MVNGVSMENVLHAFAVQQLRKSGKVAAITVKRPRKV 100 (1027)
T ss_pred EEcCcchhhhHHHHHHHHHHhhccceeEEeccccee
Confidence 999999999999999999999999888888775443
No 32
>PRK10139 serine endoprotease; Provisional
Probab=98.48 E-value=8e-07 Score=76.25 Aligned_cols=60 Identities=32% Similarity=0.455 Sum_probs=53.6
Q ss_pred CceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Q psy16403 74 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135 (177)
Q Consensus 74 ~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~ 135 (177)
.+++|..|.++|+|+++||+.||+|++|||+++. +++++...++...+.+.+++.|++..
T Consensus 390 ~Gv~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~--~~~~~~~~l~~~~~~v~l~v~R~g~~ 449 (455)
T PRK10139 390 KGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVN--SIAEMRKVLAAKPAIIALQIVRGNES 449 (455)
T ss_pred CceEEEEeCCCChHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhCCCeEEEEEEECCEE
Confidence 4789999999999999999999999999999999 89999999987667788888886553
No 33
>PRK11186 carboxy-terminal protease; Provisional
Probab=98.42 E-value=1.3e-06 Score=77.75 Aligned_cols=89 Identities=21% Similarity=0.287 Sum_probs=65.9
Q ss_pred eceeecCchhhhh---hcCCcccceeeeeccCCCCceEEEeeCCCCHHhHc-CCCCCCEEEEEC--CE---EcCCCCHHH
Q psy16403 43 RHFIVYPPESYTV---LAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAA-GLVPGDRVVAVN--NQ---TIADLPYAE 113 (177)
Q Consensus 43 ~~~~~~~~~~~~~---~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~a-Gl~~GD~I~~In--g~---~v~~~~~~~ 113 (177)
.++.|+.|..+.. .+.+.+.|++..+.... ..++|..|.+||||+++ ||++||+|++|| |. ++.+++.++
T Consensus 222 phT~Y~sp~e~e~f~~~~~~~~~GIGa~l~~~~-~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~ 300 (667)
T PRK11186 222 PHTSYLSPRNAEQFNTEMNLSLEGIGAVLQMDD-DYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDD 300 (667)
T ss_pred CCccccChHHHHHhhhccCCceeEEEEEEEEeC-CeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHH
Confidence 3456666666543 33556667777654332 45889999999999998 899999999999 43 555677889
Q ss_pred HHHHHHcC-CCeEEEEEEeC
Q psy16403 114 VVQLIQNS-PAYLHLLVVPK 132 (177)
Q Consensus 114 ~~~~l~~~-~~~v~l~v~~~ 132 (177)
++.+|+.. +..|.|++.+.
T Consensus 301 vv~lirG~~Gt~V~LtV~r~ 320 (667)
T PRK11186 301 VVALIKGPKGSKVRLEILPA 320 (667)
T ss_pred HHHHhcCCCCCEEEEEEEeC
Confidence 99999864 56688988873
No 34
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=98.40 E-value=1.9e-06 Score=71.68 Aligned_cols=60 Identities=22% Similarity=0.362 Sum_probs=53.0
Q ss_pred CceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCcc
Q psy16403 74 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKEND 135 (177)
Q Consensus 74 ~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~~~~~~ 135 (177)
.+++|..|.++|||+++||++||+|++|||+++. +++++.+.+.. .++.+.+++.|++..
T Consensus 278 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~--s~~dl~~~l~~~~~g~~v~l~v~R~g~~ 339 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAGILVRDVILKYDGKDVI--GAEELMDRIAETRPGSKVMVTVLRQGKQ 339 (351)
T ss_pred ccceEeecCCCChHHHCCCCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 5799999999999999999999999999999999 89999888874 467789999886543
No 35
>PRK10942 serine endoprotease; Provisional
Probab=98.39 E-value=1.8e-06 Score=74.38 Aligned_cols=60 Identities=27% Similarity=0.532 Sum_probs=53.7
Q ss_pred CceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Q psy16403 74 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135 (177)
Q Consensus 74 ~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~ 135 (177)
.+++|..|.++|+|+++||++||+|++|||+++. +++++.+.+...+..+.|++.|.+..
T Consensus 408 ~gvvV~~V~~~S~A~~aGL~~GDvIv~VNg~~V~--s~~dl~~~l~~~~~~v~l~V~R~g~~ 467 (473)
T PRK10942 408 KGVVVDNVKPGTPAAQIGLKKGDVIIGANQQPVK--NIAELRKILDSKPSVLALNIQRGDSS 467 (473)
T ss_pred CCeEEEEeCCCChHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhCCCeEEEEEEECCEE
Confidence 4789999999999999999999999999999999 89999999988667788888886643
No 36
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=98.38 E-value=4e-06 Score=70.37 Aligned_cols=76 Identities=22% Similarity=0.458 Sum_probs=59.4
Q ss_pred hhhhhcCCcccceeeeeccCCCCceEEEee--------CCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC-C
Q psy16403 52 SYTVLAGDRRLGLRSRCMDEPMDTIFIKHV--------RPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS-P 122 (177)
Q Consensus 52 ~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V--------~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~-~ 122 (177)
...+..++...|+.+.. .++.|... ..++||+++||+.||+|++|||.++. +++++.+.+... +
T Consensus 88 ~~~v~pgG~~iGI~l~t-----~GVlVvg~~~v~~~~g~~~SPAa~AGLq~GDiIvsING~~V~--s~~DL~~iL~~~~g 160 (402)
T TIGR02860 88 DIKVIPGGQSIGVKLNT-----KGVLVVGFSDIETEKGKIHSPGEEAGIQIGDRILKINGEKIK--NMDDLANLINKAGG 160 (402)
T ss_pred cCEEEECCEEEEEEEec-----CEEEEEEEEcccccCCCCCCHHHHcCCCCCCEEEEECCEECC--CHHHHHHHHHhCCC
Confidence 33446688888887764 56777553 23689999999999999999999999 899999998865 4
Q ss_pred CeEEEEEEeCCc
Q psy16403 123 AYLHLLVVPKEN 134 (177)
Q Consensus 123 ~~v~l~v~~~~~ 134 (177)
..+.+++.|++.
T Consensus 161 ~~V~LtV~R~Ge 172 (402)
T TIGR02860 161 EKLTLTIERGGK 172 (402)
T ss_pred CeEEEEEEECCE
Confidence 568888887654
No 37
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=98.38 E-value=1.7e-06 Score=73.05 Aligned_cols=50 Identities=30% Similarity=0.344 Sum_probs=42.4
Q ss_pred EEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEe
Q psy16403 78 IKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 131 (177)
Q Consensus 78 V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~ 131 (177)
|..|.|+|+|+++||++||+|++|||+++. +|.++...+. +..+.+++.+
T Consensus 2 I~~V~pgSpAe~AGLe~GD~IlsING~~V~--Dw~D~~~~l~--~e~l~L~V~~ 51 (433)
T TIGR03279 2 ISAVLPGSIAEELGFEPGDALVSINGVAPR--DLIDYQFLCA--DEELELEVLD 51 (433)
T ss_pred cCCcCCCCHHHHcCCCCCCEEEEECCEECC--CHHHHHHHhc--CCcEEEEEEc
Confidence 456899999999999999999999999999 8999887774 3557777753
No 38
>KOG0606|consensus
Probab=98.37 E-value=1.8e-06 Score=79.02 Aligned_cols=87 Identities=30% Similarity=0.397 Sum_probs=72.7
Q ss_pred EEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEEEECCEE
Q psy16403 26 NLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQT 105 (177)
Q Consensus 26 ~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~ 105 (177)
.+++++++ ..|||++..-.+|..+...++ -...|..|.+++||..+|++.+|.|+.|||+.
T Consensus 629 pI~i~~~~--~~yGft~~airVy~Gd~d~yt-----------------vhh~v~sv~egsPA~~agls~~DlIthvnge~ 689 (1205)
T KOG0606|consen 629 PITIHFSG--KKYGFTLRAIRVYMGDKDVYT-----------------VHHSVGSVEEGSPAFEAGLSAGDLITHVNGEP 689 (1205)
T ss_pred ceeeeccc--cccCceeeeEEEecCCcccce-----------------eeeeeeeecCCCCccccCCCccceeEeccCcc
Confidence 48899999 999999988666544432221 23578899999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHcCCCeEEEEEEe
Q psy16403 106 IADLPYAEVVQLIQNSPAYLHLLVVP 131 (177)
Q Consensus 106 v~~~~~~~~~~~l~~~~~~v~l~v~~ 131 (177)
+.++.|.++++++...++.+.+.+..
T Consensus 690 v~gl~H~ev~~Lll~~gn~v~~~ttp 715 (1205)
T KOG0606|consen 690 VHGLVHTEVMELLLKSGNKVTLRTTP 715 (1205)
T ss_pred cchhhHHHHHHHHHhcCCeeEEEeec
Confidence 99999999999999888888887754
No 39
>KOG3542|consensus
Probab=98.37 E-value=9.8e-07 Score=77.28 Aligned_cols=85 Identities=29% Similarity=0.472 Sum_probs=69.3
Q ss_pred CCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEEEE
Q psy16403 22 LGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAV 101 (177)
Q Consensus 22 ~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~I 101 (177)
.++|.|+|.|..+...+-|.+.+ +...|+ ++||..|.||+.|++.|++.||+|++|
T Consensus 534 AK~RqviLtk~sre~pl~f~L~G--------------GsEkGf----------gifV~~V~pgskAa~~GlKRgDqilEV 589 (1283)
T KOG3542|consen 534 AKPRQVILTKASREDPLMFRLVG--------------GSEKGF----------GIFVAEVFPGSKAAREGLKRGDQILEV 589 (1283)
T ss_pred ccceeEEEecccccCCceeEecc--------------Cccccc----------eeEEeeecCCchHHHhhhhhhhhhhhc
Confidence 46899999997767888998875 333343 689999999999999999999999999
Q ss_pred CCEEcCCCCHHHHHHHHHcCCCeEEEEEEe
Q psy16403 102 NNQTIADLPYAEVVQLIQNSPAYLHLLVVP 131 (177)
Q Consensus 102 ng~~v~~~~~~~~~~~l~~~~~~v~l~v~~ 131 (177)
||+..++++...+..+++.. ..+.|++..
T Consensus 590 NgQnfenis~~KA~eiLrnn-thLtltvKt 618 (1283)
T KOG3542|consen 590 NGQNFENISAKKAEEILRNN-THLTLTVKT 618 (1283)
T ss_pred cccchhhhhHHHHHHHhcCC-ceEEEEEec
Confidence 99999998888888888753 335555543
No 40
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=98.35 E-value=2.5e-06 Score=72.66 Aligned_cols=60 Identities=30% Similarity=0.504 Sum_probs=53.3
Q ss_pred CceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCcc
Q psy16403 74 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKEND 135 (177)
Q Consensus 74 ~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~~~~~~ 135 (177)
.+++|..|.++|+|+++||+.||+|++|||+++. +++++.++++. .++.+.+++.|.+..
T Consensus 362 ~Gv~V~~V~~~SpA~~aGL~~GDvI~~Ing~~V~--s~~d~~~~l~~~~~g~~v~l~v~R~g~~ 423 (428)
T TIGR02037 362 KGVVVTKVVSGSPAARAGLQPGDVILSVNQQPVS--SVAELRKVLDRAKKGGRVALLILRGGAT 423 (428)
T ss_pred CceEEEEeCCCCHHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 4799999999999999999999999999999999 89999999875 357788999886653
No 41
>PRK10898 serine endoprotease; Provisional
Probab=98.34 E-value=3.3e-06 Score=70.28 Aligned_cols=60 Identities=23% Similarity=0.445 Sum_probs=52.4
Q ss_pred CceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCcc
Q psy16403 74 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKEND 135 (177)
Q Consensus 74 ~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~~~~~~ 135 (177)
.+++|..|.++|||+++||+.||+|++|||+++. ++.++...+.. .+..+.+++.|.+..
T Consensus 279 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~--s~~~l~~~l~~~~~g~~v~l~v~R~g~~ 340 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAGIQVNDLIISVNNKPAI--SALETMDQVAEIRPGSVIPVVVMRDDKQ 340 (353)
T ss_pred CeEEEEEECCCChHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 6899999999999999999999999999999999 88888887764 457789999886543
No 42
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=98.34 E-value=2.7e-06 Score=72.94 Aligned_cols=59 Identities=29% Similarity=0.481 Sum_probs=51.4
Q ss_pred ceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC-CCeEEEEEEeCCcc
Q psy16403 75 TIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS-PAYLHLLVVPKEND 135 (177)
Q Consensus 75 ~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~~~~~~ 135 (177)
+..|..|.++|||+++||++||+|++|||+++. +++++.+.+... ++.+.+++.|++..
T Consensus 222 ~~vV~~V~~~SpA~~AGL~~GDvIl~Ing~~V~--s~~dl~~~l~~~~~~~v~l~v~R~g~~ 281 (449)
T PRK10779 222 EPVLAEVQPNSAASKAGLQAGDRIVKVDGQPLT--QWQTFVTLVRDNPGKPLALEIERQGSP 281 (449)
T ss_pred CcEEEeeCCCCHHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhCCCCEEEEEEEECCEE
Confidence 478999999999999999999999999999999 899999988763 45688888886643
No 43
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=98.31 E-value=2.3e-06 Score=73.35 Aligned_cols=58 Identities=22% Similarity=0.314 Sum_probs=49.9
Q ss_pred eEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCcc
Q psy16403 76 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKEND 135 (177)
Q Consensus 76 ~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~--~~~v~l~v~~~~~~ 135 (177)
..|..|.++|||++|||++||+|++|||+++. +++++...+... ++++.+++.|++..
T Consensus 128 ~lV~~V~~~SpA~kAGLk~GDvI~~vnG~~V~--~~~~l~~~v~~~~~g~~v~v~v~R~gk~ 187 (449)
T PRK10779 128 PVVGEIAPNSIAAQAQIAPGTELKAVDGIETP--DWDAVRLALVSKIGDESTTITVAPFGSD 187 (449)
T ss_pred ccccccCCCCHHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhhccCCceEEEEEeCCcc
Confidence 47899999999999999999999999999999 888888776543 46799999987654
No 44
>KOG1892|consensus
Probab=98.22 E-value=4.8e-06 Score=75.33 Aligned_cols=87 Identities=21% Similarity=0.386 Sum_probs=70.0
Q ss_pred ceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEEEEC
Q psy16403 24 PRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVN 102 (177)
Q Consensus 24 ~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~In 102 (177)
-.+|+|+|. +|+|++|.... |. +...-|+||..|.+|++|+..| |..||++++||
T Consensus 934 i~~vtL~Kn---nGmGLSIVAAk-----------Ga----------Gq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVd 989 (1629)
T KOG1892|consen 934 IITVTLKKN---NGMGLSIVAAK-----------GA----------GQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVD 989 (1629)
T ss_pred eEEEEEecc---CCceEEEEeec-----------cC----------CccccceEEEEeccCCccccccccccCceeeeec
Confidence 356777655 57888776521 11 1223468999999999999999 99999999999
Q ss_pred CEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 103 NQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 103 g~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
|+.+-+++.+.+..++.+.+..|.|.|..++.
T Consensus 990 G~SLiGisQErAA~lmtrtg~vV~leVaKqgA 1021 (1629)
T KOG1892|consen 990 GHSLIGISQERAARLMTRTGNVVHLEVAKQGA 1021 (1629)
T ss_pred CcccccccHHHHHHHHhccCCeEEEehhhhhh
Confidence 99999999999999999999999998866543
No 45
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=98.07 E-value=1.3e-05 Score=68.18 Aligned_cols=58 Identities=24% Similarity=0.348 Sum_probs=49.7
Q ss_pred CceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy16403 74 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 133 (177)
Q Consensus 74 ~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~ 133 (177)
.+..|..|.++|||+++|++.||+|+++||+++. ++.++.+.+......+.+++.+++
T Consensus 128 ~g~~V~~V~~~SpA~~AGL~~GDvI~~vng~~v~--~~~dl~~~ia~~~~~v~~~I~r~g 185 (420)
T TIGR00054 128 VGPVIELLDKNSIALEAGIEPGDEILSVNGNKIP--GFKDVRQQIADIAGEPMVEILAER 185 (420)
T ss_pred CCceeeccCCCCHHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhhcccceEEEEEec
Confidence 4678999999999999999999999999999999 888998887665566777777643
No 46
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=98.04 E-value=4.1e-05 Score=55.40 Aligned_cols=62 Identities=26% Similarity=0.434 Sum_probs=45.8
Q ss_pred CceEEEeeCCCCHHhHcCCCC-CCEEEEECCEEcCCCCHHHHHHHHHcC-CCeEEEEEEeCCccee
Q psy16403 74 DTIFIKHVRPHSPAAAAGLVP-GDRVVAVNNQTIADLPYAEVVQLIQNS-PAYLHLLVVPKENDLL 137 (177)
Q Consensus 74 ~~~~V~~V~~gs~A~~aGl~~-GD~I~~Ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~~~~~~~~ 137 (177)
.+..|..|.|+|||++|||++ .|.|+.+++..+. +.+++...++.. +..+.|.|.....+.+
T Consensus 43 ~~~~Vl~V~p~SPA~~AGL~p~~DyIig~~~~~l~--~~~~l~~~v~~~~~~~l~L~Vyns~~~~v 106 (138)
T PF04495_consen 43 EGWHVLRVAPNSPAAKAGLEPFFDYIIGIDGGLLD--DEDDLFELVEANENKPLQLYVYNSKTDSV 106 (138)
T ss_dssp CEEEEEEE-TTSHHHHTT--TTTEEEEEETTCE----STCHHHHHHHHTTTS-EEEEEEETTTTCE
T ss_pred ceEEEeEecCCCHHHHCCccccccEEEEccceecC--CHHHHHHHHHHcCCCcEEEEEEECCCCeE
Confidence 467899999999999999998 6999999998888 556888888765 4568888887666554
No 47
>KOG0609|consensus
Probab=97.92 E-value=5.7e-05 Score=64.80 Aligned_cols=84 Identities=21% Similarity=0.330 Sum_probs=71.1
Q ss_pred CceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEEEE
Q psy16403 23 GPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAV 101 (177)
Q Consensus 23 ~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~I 101 (177)
..|.+.+.|.. ...+|.+++.. +. ..++|..+..|+.+++.| |..||.|.+|
T Consensus 122 ~vriv~i~k~~-~eplG~Tik~~-------------------------e~-~~~~vARI~~GG~~~r~glL~~GD~i~Ev 174 (542)
T KOG0609|consen 122 AVRIVRIVKNT-GEPLGATIRVE-------------------------ED-TKVVVARIMHGGMADRQGLLHVGDEILEV 174 (542)
T ss_pred eeEEEEEeecC-CCccceEEEec-------------------------cC-CccEEeeeccCCcchhccceeeccchhee
Confidence 35777887773 38889888761 11 158999999999999999 9999999999
Q ss_pred CCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy16403 102 NNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 133 (177)
Q Consensus 102 ng~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~ 133 (177)
||+.+.+....++..+++...+.+++.+++..
T Consensus 175 NGi~v~~~~~~e~q~~l~~~~G~itfkiiP~~ 206 (542)
T KOG0609|consen 175 NGISVANKSPEELQELLRNSRGSITFKIIPSY 206 (542)
T ss_pred cCeecccCCHHHHHHHHHhCCCcEEEEEcccc
Confidence 99999999999999999998899999998763
No 48
>KOG3571|consensus
Probab=97.86 E-value=0.00018 Score=61.37 Aligned_cols=59 Identities=20% Similarity=0.442 Sum_probs=50.9
Q ss_pred CCCceEEEeeCCCCHHhHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcC---CCeEEEEEE
Q psy16403 72 PMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNS---PAYLHLLVV 130 (177)
Q Consensus 72 ~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~---~~~v~l~v~ 130 (177)
.+.++||..|.++++-+..| +.+||.|++||.++.++++.++++..|+.. ...+.|++.
T Consensus 275 gDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~~gPi~ltvA 337 (626)
T KOG3571|consen 275 GDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSRPGPIKLTVA 337 (626)
T ss_pred CCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhccCCCeEEEEe
Confidence 34689999999999999999 999999999999999999999999999853 344666664
No 49
>KOG3605|consensus
Probab=97.85 E-value=1.4e-05 Score=69.69 Aligned_cols=78 Identities=23% Similarity=0.436 Sum_probs=66.5
Q ss_pred CceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEEEEC
Q psy16403 23 GPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVN 102 (177)
Q Consensus 23 ~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~In 102 (177)
...+|.|+|.+....+||++.-. +|+++..|+.|++-|++.|.+|++||
T Consensus 736 PV~~V~I~RPd~kyQLGFSVQNG-------------------------------iICSLlRGGIAERGGVRVGHRIIEIN 784 (829)
T KOG3605|consen 736 PVTTVLIRRPDLRYQLGFSVQNG-------------------------------IICSLLRGGIAERGGVRVGHRIIEIN 784 (829)
T ss_pred CceEEEeecccchhhccceeeCc-------------------------------EeehhhcccchhccCceeeeeEEEEC
Confidence 34678899988677889999862 78899999999999999999999999
Q ss_pred CEEcCCCCHHHHHHHHHcCCCeEEEEEEe
Q psy16403 103 NQTIADLPYAEVVQLIQNSPAYLHLLVVP 131 (177)
Q Consensus 103 g~~v~~~~~~~~~~~l~~~~~~v~l~v~~ 131 (177)
|..|-...|+.++++|..+-..+.+..++
T Consensus 785 gQSVVA~pHekIV~lLs~aVGEIhMKTMP 813 (829)
T KOG3605|consen 785 GQSVVATPHEKIVQLLSNAVGEIHMKTMP 813 (829)
T ss_pred CceEEeccHHHHHHHHHHhhhhhhhhcch
Confidence 99999889999999998776666665543
No 50
>KOG3605|consensus
Probab=97.79 E-value=3.9e-05 Score=67.08 Aligned_cols=91 Identities=20% Similarity=0.348 Sum_probs=70.0
Q ss_pred CCCCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCC
Q psy16403 18 SSQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGD 96 (177)
Q Consensus 18 ~~~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD 96 (177)
++....-|.|.|.|.. ...+|..|.-+- ||. ..+.++|.....++||+++| |-.||
T Consensus 640 FakkE~qKEVvv~K~k-GEiLGVViVESG---------------WGS-------mLPTVViAnmm~~GpAarsgkLnIGD 696 (829)
T KOG3605|consen 640 FAKKENQKEVVLEKHK-GEILGVVIVESG---------------WGS-------ILPTVVIANMMHGGPAARSGKLNIGD 696 (829)
T ss_pred hhhhcccceeeeeccc-CceeeEEEEecC---------------ccc-------cchHHHHHhcccCChhhhcCCccccc
Confidence 3444456778888877 688898876542 221 12467889999999999999 99999
Q ss_pred EEEEECCEEcCCCCHHHHHHHHHcCCCe--EEEEEEe
Q psy16403 97 RVVAVNNQTIADLPYAEVVQLIQNSPAY--LHLLVVP 131 (177)
Q Consensus 97 ~I~~Ing~~v~~~~~~~~~~~l~~~~~~--v~l~v~~ 131 (177)
+|++|||..+-++...-...+|+..++. |.|+|++
T Consensus 697 QiiaING~SLVGLPLstcQs~Ik~~KnQT~VkltiV~ 733 (829)
T KOG3605|consen 697 QIMSINGTSLVGLPLSTCQSIIKGLKNQTAVKLNIVS 733 (829)
T ss_pred eeEeecCceeccccHHHHHHHHhcccccceEEEEEec
Confidence 9999999999999999999999876543 6665543
No 51
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=97.61 E-value=0.00043 Score=46.21 Aligned_cols=58 Identities=28% Similarity=0.381 Sum_probs=38.9
Q ss_pred ceEEEeeCCC--------CHHhHcC--CCCCCEEEEECCEEcCCCCHHHHHHHHHc-CCCeEEEEEEeCCc
Q psy16403 75 TIFIKHVRPH--------SPAAAAG--LVPGDRVVAVNNQTIADLPYAEVVQLIQN-SPAYLHLLVVPKEN 134 (177)
Q Consensus 75 ~~~V~~V~~g--------s~A~~aG--l~~GD~I~~Ing~~v~~~~~~~~~~~l~~-~~~~v~l~v~~~~~ 134 (177)
+..|.+|.++ ||..+.| ++.||.|++|||+++. .-.+...+|.. .++.+.|++.+...
T Consensus 13 ~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~--~~~~~~~lL~~~agk~V~Ltv~~~~~ 81 (88)
T PF14685_consen 13 GYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVT--ADANPYRLLEGKAGKQVLLTVNRKPG 81 (88)
T ss_dssp EEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-B--TTB-HHHHHHTTTTSEEEEEEE-STT
T ss_pred EEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECC--CCCCHHHHhcccCCCEEEEEEecCCC
Confidence 4567777664 7888888 7799999999999998 55577777775 56778999887665
No 52
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.00059 Score=56.56 Aligned_cols=61 Identities=26% Similarity=0.401 Sum_probs=52.4
Q ss_pred CCceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCcc
Q psy16403 73 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKEND 135 (177)
Q Consensus 73 ~~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~--~~~v~l~v~~~~~~ 135 (177)
..+++|..|.+++||+++|++.||.|+++||.++. +..++...+... +..+.+.+.|.+..
T Consensus 269 ~~G~~V~~v~~~spa~~agi~~Gdii~~vng~~v~--~~~~l~~~v~~~~~g~~v~~~~~r~g~~ 331 (347)
T COG0265 269 AAGAVVLGVLPGSPAAKAGIKAGDIITAVNGKPVA--SLSDLVAAVASNRPGDEVALKLLRGGKE 331 (347)
T ss_pred CCceEEEecCCCChHHHcCCCCCCEEEEECCEEcc--CHHHHHHHHhccCCCCEEEEEEEECCEE
Confidence 45689999999999999999999999999999999 788888887653 56789999987443
No 53
>KOG3129|consensus
Probab=97.46 E-value=0.00055 Score=52.35 Aligned_cols=62 Identities=23% Similarity=0.447 Sum_probs=44.7
Q ss_pred ceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCC-CHHHHHHHHHcC-CCeEEEEEEeCCcce
Q psy16403 75 TIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADL-PYAEVVQLIQNS-PAYLHLLVVPKENDL 136 (177)
Q Consensus 75 ~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~-~~~~~~~~l~~~-~~~v~l~v~~~~~~~ 136 (177)
-++|..|.|+|||+++||+.||.|+++.++.-.+. ....+....+.. +..+.++++|.+...
T Consensus 140 Fa~V~sV~~~SPA~~aGl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~v 203 (231)
T KOG3129|consen 140 FAVVDSVVPGSPADEAGLCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQKV 203 (231)
T ss_pred eEEEeecCCCChhhhhCcccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCEE
Confidence 47889999999999999999999999988766532 233333333433 445788888866543
No 54
>KOG3938|consensus
Probab=97.32 E-value=0.00057 Score=54.09 Aligned_cols=83 Identities=19% Similarity=0.321 Sum_probs=66.8
Q ss_pred CCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEEE
Q psy16403 22 LGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVA 100 (177)
Q Consensus 22 ~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~ 100 (177)
..++.|.+.|.. +.||++|.-. |- .-.||..+.++|.-.+.- ++.||.|-+
T Consensus 125 Gq~kEv~v~Kse--dalGlTITDN------------G~--------------GyAFIKrIkegsvidri~~i~VGd~IEa 176 (334)
T KOG3938|consen 125 GQAKEVEVVKSE--DALGLTITDN------------GA--------------GYAFIKRIKEGSVIDRIEAICVGDHIEA 176 (334)
T ss_pred CcceeEEEEecc--cccceEEeeC------------Cc--------------ceeeeEeecCCchhhhhhheeHHhHHHh
Confidence 356778888888 8888888752 11 126999999999999877 999999999
Q ss_pred ECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeC
Q psy16403 101 VNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPK 132 (177)
Q Consensus 101 Ing~~v~~~~~~~~~~~l~~~--~~~v~l~v~~~ 132 (177)
|||+.+-++.|.++.+.|+.. +...++.++.+
T Consensus 177 iNge~ivG~RHYeVArmLKel~rge~ftlrLieP 210 (334)
T KOG3938|consen 177 INGESIVGKRHYEVARMLKELPRGETFTLRLIEP 210 (334)
T ss_pred hcCccccchhHHHHHHHHHhcccCCeeEEEeecc
Confidence 999999999999999999874 45566666543
No 55
>KOG3532|consensus
Probab=97.27 E-value=0.0013 Score=58.32 Aligned_cols=57 Identities=28% Similarity=0.366 Sum_probs=48.7
Q ss_pred CCceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEe
Q psy16403 73 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 131 (177)
Q Consensus 73 ~~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~ 131 (177)
...+.|..|.++++|.++.+++||++++|||+++. +..++.+.++.....+...+.+
T Consensus 397 ~~~v~v~tv~~ns~a~k~~~~~gdvlvai~~~pi~--s~~q~~~~~~s~~~~~~~l~~~ 453 (1051)
T KOG3532|consen 397 NRAVKVCTVEDNSLADKAAFKPGDVLVAINNVPIR--SERQATRFLQSTTGDLTVLVER 453 (1051)
T ss_pred ceEEEEEEecCCChhhHhcCCCcceEEEecCccch--hHHHHHHHHHhcccceEEEEee
Confidence 34578899999999999999999999999999999 8889999998776665555544
No 56
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=97.07 E-value=0.0031 Score=50.67 Aligned_cols=55 Identities=24% Similarity=0.338 Sum_probs=42.3
Q ss_pred EeeCCCC---HHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCcc
Q psy16403 79 KHVRPHS---PAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKEND 135 (177)
Q Consensus 79 ~~V~~gs---~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~--~~~v~l~v~~~~~~ 135 (177)
..+.|+. .-.++||+.||.+++|||.++. +.++..++++.- ...+.|+|.|++..
T Consensus 209 Yrl~Pgkd~~lF~~~GLq~GDva~sING~dL~--D~~qa~~l~~~L~~~tei~ltVeRdGq~ 268 (276)
T PRK09681 209 YAVKPGADRSLFDASGFKEGDIAIALNQQDFT--DPRAMIALMRQLPSMDSIQLTVLRKGAR 268 (276)
T ss_pred EEECCCCcHHHHHHcCCCCCCEEEEeCCeeCC--CHHHHHHHHHHhccCCeEEEEEEECCEE
Confidence 4566774 4467899999999999999999 666666666643 46689999987654
No 57
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=97.02 E-value=0.0027 Score=54.81 Aligned_cols=50 Identities=30% Similarity=0.400 Sum_probs=37.4
Q ss_pred ceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy16403 75 TIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK 132 (177)
Q Consensus 75 ~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~ 132 (177)
...|..|.++|||..|||.+||.|++|||..-. +++ -+.+..+.+.+.+.
T Consensus 463 ~~~i~~V~~~gPA~~AGl~~Gd~ivai~G~s~~---l~~-----~~~~d~i~v~~~~~ 512 (558)
T COG3975 463 HEKITFVFPGGPAYKAGLSPGDKIVAINGISDQ---LDR-----YKVNDKIQVHVFRE 512 (558)
T ss_pred eeEEEecCCCChhHhccCCCccEEEEEcCcccc---ccc-----cccccceEEEEccC
Confidence 568999999999999999999999999999221 110 12456666766653
No 58
>KOG1320|consensus
Probab=96.44 E-value=0.015 Score=50.10 Aligned_cols=64 Identities=25% Similarity=0.406 Sum_probs=49.8
Q ss_pred ceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCC--eEEEEEEeCCcceeeeee
Q psy16403 75 TIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA--YLHLLVVPKENDLLQLYF 141 (177)
Q Consensus 75 ~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~--~v~l~v~~~~~~~~~~~~ 141 (177)
++.+..|.+++++...++..||+|++|||+++. +..++..++..+.. ++.+. .++..+....++
T Consensus 399 ~v~is~Vlp~~~~~~~~~~~g~~V~~vng~~V~--n~~~l~~~i~~~~~~~~v~vl-~~~~~e~~tl~I 464 (473)
T KOG1320|consen 399 LVLVSQVLPGSINGGYGLKPGDQVVKVNGKPVK--NLKHLYELIEECSTEDKVAVL-DRRSAEDATLEI 464 (473)
T ss_pred EEEEEEeccCCCcccccccCCCEEEEECCEEee--chHHHHHHHHhcCcCceEEEE-EecCccceeEEe
Confidence 477889999999999999999999999999999 67789999987653 33333 344555544443
No 59
>KOG1421|consensus
Probab=96.32 E-value=0.012 Score=52.39 Aligned_cols=57 Identities=25% Similarity=0.467 Sum_probs=48.3
Q ss_pred eEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHc-CCCeEEEEEEeCCcc
Q psy16403 76 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN-SPAYLHLLVVPKEND 135 (177)
Q Consensus 76 ~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~-~~~~v~l~v~~~~~~ 135 (177)
++|..|.++|+|++. |++||.+++||+.-+. +..++.+.+.. .++.+.|+++|.+.+
T Consensus 305 LvV~~vL~~gpa~k~-Le~GDillavN~t~l~--df~~l~~iLDegvgk~l~LtI~Rggqe 362 (955)
T KOG1421|consen 305 LVVETVLPEGPAEKK-LEPGDILLAVNSTCLN--DFEALEQILDEGVGKNLELTIQRGGQE 362 (955)
T ss_pred EEEEEeccCCchhhc-cCCCcEEEEEcceehH--HHHHHHHHHhhccCceEEEEEEeCCEE
Confidence 678999999999988 9999999999988887 67777777764 577899999997664
No 60
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=96.29 E-value=0.019 Score=44.96 Aligned_cols=60 Identities=23% Similarity=0.237 Sum_probs=47.0
Q ss_pred ceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCcce
Q psy16403 75 TIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKENDL 136 (177)
Q Consensus 75 ~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~--~~~v~l~v~~~~~~~ 136 (177)
|..+.-..+++.-+..||+.||..+++|+.+++ +.+++..+++.. -..+.+++.|++..+
T Consensus 208 Gyr~~pgkd~slF~~sglq~GDIavaiNnldlt--dp~~m~~llq~l~~m~s~qlTv~R~G~rh 269 (275)
T COG3031 208 GYRFEPGKDGSLFYKSGLQRGDIAVAINNLDLT--DPEDMFRLLQMLRNMPSLQLTVIRRGKRH 269 (275)
T ss_pred EEEecCCCCcchhhhhcCCCcceEEEecCcccC--CHHHHHHHHHhhhcCcceEEEEEecCccc
Confidence 334444556778889999999999999999999 777877777653 456899999987654
No 61
>PF12812 PDZ_1: PDZ-like domain
Probab=96.25 E-value=0.018 Score=37.45 Aligned_cols=46 Identities=20% Similarity=0.257 Sum_probs=38.7
Q ss_pred eEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCC
Q psy16403 76 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA 123 (177)
Q Consensus 76 ~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~ 123 (177)
.++.....++++...|+..|..|.+|||+++. +.+++++.++..++
T Consensus 32 gv~v~~~~g~~~~~~~i~~g~iI~~Vn~kpt~--~Ld~f~~vvk~ipd 77 (78)
T PF12812_consen 32 GVYVAVSGGSLAFAGGISKGFIITSVNGKPTP--DLDDFIKVVKKIPD 77 (78)
T ss_pred EEEEEecCCChhhhCCCCCCeEEEeECCcCCc--CHHHHHHHHHhCCC
Confidence 45566678888887779999999999999999 88899999887543
No 62
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=96.18 E-value=0.025 Score=46.12 Aligned_cols=57 Identities=16% Similarity=0.313 Sum_probs=48.5
Q ss_pred CceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCC
Q psy16403 74 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKE 133 (177)
Q Consensus 74 ~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~~~~ 133 (177)
.|+++..+..++++..- |+.||.|++|||.++. +.+++..++.. .++++++...|.+
T Consensus 130 ~gvyv~~v~~~~~~~gk-l~~gD~i~avdg~~f~--s~~e~i~~v~~~k~Gd~VtI~~~r~~ 188 (342)
T COG3480 130 AGVYVLSVIDNSPFKGK-LEAGDTIIAVDGEPFT--SSDELIDYVSSKKPGDEVTIDYERHN 188 (342)
T ss_pred eeEEEEEccCCcchhce-eccCCeEEeeCCeecC--CHHHHHHHHhccCCCCeEEEEEEecc
Confidence 47889999999988644 9999999999999999 88999999975 4688999888633
No 63
>KOG1738|consensus
Probab=94.40 E-value=0.065 Score=47.26 Aligned_cols=58 Identities=24% Similarity=0.367 Sum_probs=49.2
Q ss_pred CceEEEeeCCCCHHhHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEe
Q psy16403 74 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 131 (177)
Q Consensus 74 ~~~~V~~V~~gs~A~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~ 131 (177)
..++|..+.+++||...+ |..||.+++||+..+-+..+..++..+.....-+.+++..
T Consensus 225 g~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~lkK 283 (638)
T KOG1738|consen 225 GPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTLKK 283 (638)
T ss_pred CceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceeeeec
Confidence 457889999999999998 9999999999999988878888888887766666666654
No 64
>KOG3834|consensus
Probab=93.98 E-value=0.18 Score=42.77 Aligned_cols=61 Identities=23% Similarity=0.345 Sum_probs=48.4
Q ss_pred CceEEEeeCCCCHHhHcCCCC-CCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Q psy16403 74 DTIFIKHVRPHSPAAAAGLVP-GDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135 (177)
Q Consensus 74 ~~~~V~~V~~gs~A~~aGl~~-GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~ 135 (177)
.+..|..|..+|+|.++||.. -|.|++|||..+.. +.+.+..+++..-.+|.++++.....
T Consensus 15 eg~hvlkVqedSpa~~aglepffdFIvSI~g~rL~~-dnd~Lk~llk~~sekVkltv~n~kt~ 76 (462)
T KOG3834|consen 15 EGYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLNK-DNDTLKALLKANSEKVKLTVYNSKTQ 76 (462)
T ss_pred eeEEEEEeecCChHHhcCcchhhhhhheeCcccccC-chHHHHHHHHhcccceEEEEEecccc
Confidence 356889999999999999665 69999999999974 55677777877766688888764433
No 65
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=93.17 E-value=0.43 Score=39.70 Aligned_cols=53 Identities=40% Similarity=0.663 Sum_probs=42.6
Q ss_pred EEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC-CCe---EEEEEEe
Q psy16403 77 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS-PAY---LHLLVVP 131 (177)
Q Consensus 77 ~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~-~~~---v~l~v~~ 131 (177)
.+..+..+++|..+|++.||.++++|+.++. +++++...+... +.. +.+.+.+
T Consensus 132 ~~~~v~~~s~a~~a~l~~Gd~iv~~~~~~i~--~~~~~~~~~~~~~~~~~~~~~i~~~~ 188 (375)
T COG0750 132 VVGEVAPKSAAALAGLRPGDRIVAVDGEKVA--SWDDVRRLLVAAAGDVFNLLTILVIR 188 (375)
T ss_pred eeeecCCCCHHHHcCCCCCCEEEeECCEEcc--CHHHHHHHHHhccCCcccceEEEEEe
Confidence 4456899999999999999999999999999 888887776643 333 5666666
No 66
>KOG3834|consensus
Probab=92.54 E-value=0.82 Score=38.92 Aligned_cols=53 Identities=30% Similarity=0.400 Sum_probs=39.2
Q ss_pred eEEEeeCCCCHHhHcCCC-CCCEEEEE-CCEEcCCCCHHHHHHHHHcC-CCeEEEEEEe
Q psy16403 76 IFIKHVRPHSPAAAAGLV-PGDRVVAV-NNQTIADLPYAEVVQLIQNS-PAYLHLLVVP 131 (177)
Q Consensus 76 ~~V~~V~~gs~A~~aGl~-~GD~I~~I-ng~~v~~~~~~~~~~~l~~~-~~~v~l~v~~ 131 (177)
-.|.+|.++|||++|||. -.|.|+-+ +.+ .. ..+|+..+|..+ ++.+.|.+..
T Consensus 111 wHvl~V~p~SPaalAgl~~~~DYivG~~~~~-~~--~~eDl~~lIeshe~kpLklyVYN 166 (462)
T KOG3834|consen 111 WHVLSVEPNSPAALAGLRPYTDYIVGIWDAV-MH--EEEDLFTLIESHEGKPLKLYVYN 166 (462)
T ss_pred eeeeecCCCCHHHhcccccccceEecchhhh-cc--chHHHHHHHHhccCCCcceeEee
Confidence 357789999999999977 67999988 444 33 567888888754 4446666654
No 67
>KOG0792|consensus
Probab=87.74 E-value=0.54 Score=44.12 Aligned_cols=40 Identities=30% Similarity=0.495 Sum_probs=35.4
Q ss_pred CCCHHhHcC--CCCCCEEEEECCEEcCCCCHHHHHHHHHcCC
Q psy16403 83 PHSPAAAAG--LVPGDRVVAVNNQTIADLPYAEVVQLIQNSP 122 (177)
Q Consensus 83 ~gs~A~~aG--l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~ 122 (177)
|+++|.... +..||+++.|||..+....++.++.+|+...
T Consensus 757 p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~~~~vs~irs~r 798 (1144)
T KOG0792|consen 757 PESTADDCTPRLNEGDQVTSINGRDVSESEHDQVVSLIRSPR 798 (1144)
T ss_pred CCCCccccccCCCcccceeeecccccccccccchHHHHhhhh
Confidence 888888877 8899999999999999889999999887654
No 68
>KOG1421|consensus
Probab=87.14 E-value=3.7 Score=37.31 Aligned_cols=48 Identities=17% Similarity=0.263 Sum_probs=43.4
Q ss_pred CceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCe
Q psy16403 74 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAY 124 (177)
Q Consensus 74 ~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~ 124 (177)
.++|+.....+|||.+ +|.....|++|||+.+. +.+++...++...+.
T Consensus 862 ~gvyvt~rg~gspalq-~l~aa~fitavng~~t~--~lddf~~~~~~ipdn 909 (955)
T KOG1421|consen 862 EGVYVTSRGYGSPALQ-MLRAAHFITAVNGHDTN--TLDDFYHMLLEIPDN 909 (955)
T ss_pred CceEEeecccCChhHh-hcchheeEEEecccccC--cHHHHHHHHhhCCCC
Confidence 5799999999999999 89999999999999999 889999999876544
No 69
>KOG2921|consensus
Probab=83.53 E-value=1.8 Score=36.58 Aligned_cols=45 Identities=16% Similarity=0.324 Sum_probs=36.9
Q ss_pred CceEEEeeCCCCHHhH-cCCCCCCEEEEECCEEcCCCCHHHHHHHHHc
Q psy16403 74 DTIFIKHVRPHSPAAA-AGLVPGDRVVAVNNQTIADLPYAEVVQLIQN 120 (177)
Q Consensus 74 ~~~~V~~V~~gs~A~~-aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~ 120 (177)
.++.|..|...||+.. -||.+||+|.++||.+|. +.+|..+.++.
T Consensus 220 ~gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV~--~v~dW~ecl~t 265 (484)
T KOG2921|consen 220 EGVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVH--KVSDWLECLAT 265 (484)
T ss_pred ceEEEEeccccCCCcCcccCCccceEEecCCcccC--CHHHHHHHHHh
Confidence 3688889988888764 379999999999999999 67777776654
No 70
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=74.00 E-value=6.1 Score=29.96 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=25.8
Q ss_pred CceEEEeeCCCCHHhHcCCCCCCEEEEEC
Q psy16403 74 DTIFIKHVRPHSPAAAAGLVPGDRVVAVN 102 (177)
Q Consensus 74 ~~~~V~~V~~gs~A~~aGl~~GD~I~~In 102 (177)
..+.|..|..||+|+++|+..++.|+++.
T Consensus 122 ~~~~Vd~v~fgS~A~~~g~d~d~~I~~v~ 150 (183)
T PF11874_consen 122 GKVIVDEVEFGSPAEKAGIDFDWEITEVE 150 (183)
T ss_pred CEEEEEecCCCCHHHHcCCCCCcEEEEEE
Confidence 45789999999999999999999998764
No 71
>KOG4371|consensus
Probab=72.88 E-value=4.6 Score=38.30 Aligned_cols=61 Identities=23% Similarity=0.421 Sum_probs=44.0
Q ss_pred CCCCceEEEeeCCCCHHhHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEe
Q psy16403 71 EPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 131 (177)
Q Consensus 71 ~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~ 131 (177)
....++++..+...+.|.-.| ++.||+++..+|.++.+.........++-..+.+.+++.+
T Consensus 1267 ~~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~~v~~p~~~~~~~ 1328 (1332)
T KOG4371|consen 1267 TMSDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLKLVQGPVQITVTR 1328 (1332)
T ss_pred CcCCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhhhccCchhheehh
Confidence 344678888888888777777 9999999999999999876655555444334445555544
No 72
>KOG4371|consensus
Probab=68.46 E-value=12 Score=35.74 Aligned_cols=46 Identities=20% Similarity=0.187 Sum_probs=40.8
Q ss_pred CCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCcce
Q psy16403 91 GLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 136 (177)
Q Consensus 91 Gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~~ 136 (177)
.|..||.++-+||+.+.+.-+.+++..++..++.+.|-++|.....
T Consensus 1186 d~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 1231 (1332)
T KOG4371|consen 1186 DIRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGDRVVLGVQRPPPAY 1231 (1332)
T ss_pred CcchhhhhhhccceeeechhhHHHHHHHhccCceEEEEeecCCccc
Confidence 4999999999999999999999999999988899999998865544
No 73
>COG5233 GRH1 Peripheral Golgi membrane protein [Intracellular trafficking and secretion]
Probab=64.75 E-value=4.7 Score=33.26 Aligned_cols=32 Identities=34% Similarity=0.660 Sum_probs=28.1
Q ss_pred eEEEeeCCCCHHhHcCCCCCCEEEEECCEEcC
Q psy16403 76 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIA 107 (177)
Q Consensus 76 ~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~ 107 (177)
+.+.+|.+.++|+++|+-.||.|+-+|+.++.
T Consensus 65 l~~lrv~~~~~~e~~~~~~~dyilg~n~Dp~~ 96 (417)
T COG5233 65 LEVLRVNPESPAEKAGMVVGDYILGINEDPLR 96 (417)
T ss_pred hhheeccccChhHhhccccceeEEeecCCcHH
Confidence 45678899999999999999999999987664
No 74
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=30.00 E-value=42 Score=28.74 Aligned_cols=33 Identities=30% Similarity=0.278 Sum_probs=28.6
Q ss_pred EEEeeCCCCHHhHcCCCCCCEEEEEC-CEEcCCC
Q psy16403 77 FIKHVRPHSPAAAAGLVPGDRVVAVN-NQTIADL 109 (177)
Q Consensus 77 ~V~~V~~gs~A~~aGl~~GD~I~~In-g~~v~~~ 109 (177)
.|..+.+.+.++..|+..||.+..|| +..+..+
T Consensus 4 ~i~~v~~~~~~d~~Gfe~~~~l~~Vn~~~~~~~c 37 (414)
T COG1625 4 KISKVGGISGADCDGFEEGDYLLKVNPGFGCKDC 37 (414)
T ss_pred ceeeccCCCcccccCccccceeeecCCCCCCCcC
Confidence 56778899999999999999999999 7777644
No 75
>KOG4060|consensus
Probab=28.43 E-value=1.6e+02 Score=21.64 Aligned_cols=91 Identities=21% Similarity=0.270 Sum_probs=55.4
Q ss_pred eEEEeceeecCchhhhhhcCC--cccceeeee-ccCCCCceEEEeeCCCCHHhHcC--CCCCCEEEEECCEEcCCCCHHH
Q psy16403 39 GFTLRHFIVYPPESYTVLAGD--RRLGLRSRC-MDEPMDTIFIKHVRPHSPAAAAG--LVPGDRVVAVNNQTIADLPYAE 113 (177)
Q Consensus 39 Gf~l~~~~~~~~~~~~~~~g~--~~~g~~~~~-~~~~~~~~~V~~V~~gs~A~~aG--l~~GD~I~~Ing~~v~~~~~~~ 113 (177)
...|.+-.+-.-+.+...+.+ ++.++.+.- -..+.....+....|.|-...+- |..-|++++++|..-. -...
T Consensus 56 NV~i~gyD~~~lEsYq~yvH~la~~l~~~V~dsYA~p~qt~~v~~l~p~stv~ese~~ltTyeRvvqls~v~Ap--~~~~ 133 (176)
T KOG4060|consen 56 NVHITGYDMTLLESYQQYVHNLANSLSIKVEDSYAMPTQTIEVLQLQPQSTVMESESVLTTYERVVQLSGVSAP--FAEI 133 (176)
T ss_pred EEEEEecccchHHHHHHHHHHHHHHcCceeEeeeccCccceeEEEecCCceeeehhhhhhhhhheeeecccCch--hHHH
Confidence 344555444444555554322 223333331 12233456778888887655544 8889999999999876 5666
Q ss_pred HHHHHHcC-CCeEEEEEEe
Q psy16403 114 VVQLIQNS-PAYLHLLVVP 131 (177)
Q Consensus 114 ~~~~l~~~-~~~v~l~v~~ 131 (177)
+.++++.+ ...+.+.|..
T Consensus 134 Fl~iiqa~lPeGV~l~VkE 152 (176)
T KOG4060|consen 134 FLEIIQASLPEGVRLSVKE 152 (176)
T ss_pred HHHHHHHhCCcceEEEeee
Confidence 77777754 5557888764
No 76
>KOG4407|consensus
Probab=25.35 E-value=30 Score=34.15 Aligned_cols=53 Identities=6% Similarity=-0.056 Sum_probs=36.1
Q ss_pred EEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEE
Q psy16403 77 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 130 (177)
Q Consensus 77 ~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~ 130 (177)
++-.+..++++..+|+..+|.|..|+|..+.+.+ .....+++.....+.+.|+
T Consensus 99 ~~~Q~~s~~~~~nsG~~s~~~v~~itG~e~~~~T-S~~~~~vk~~eT~~~~eV~ 151 (1973)
T KOG4407|consen 99 NWPQEASSAAGSNSGSSSSVGVAGITGLEPTSPT-SLPPYQVKAMETIFIKEVQ 151 (1973)
T ss_pred ccchhcccCcccccCcccccceeeecccccCCCc-cccHHHHhhhhhhhhhhhc
Confidence 3445667888899999999999999999888655 3444444443333333343
No 77
>PRK15464 cold shock-like protein CspH; Provisional
Probab=24.54 E-value=1.7e+02 Score=18.27 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=11.6
Q ss_pred EEEEecCCCCCceeEEEec
Q psy16403 26 NLILRRSAALNGFGFTLRH 44 (177)
Q Consensus 26 ~v~l~r~~~~~~~Gf~l~~ 44 (177)
+|...... +||||....
T Consensus 8 ~Vk~fn~~--KGfGFI~~~ 24 (70)
T PRK15464 8 IVKTFDRK--SGKGFIIPS 24 (70)
T ss_pred EEEEEECC--CCeEEEccC
Confidence 45666666 899996554
No 78
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=21.74 E-value=2.3e+02 Score=21.37 Aligned_cols=34 Identities=26% Similarity=0.524 Sum_probs=30.7
Q ss_pred CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeE
Q psy16403 92 LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYL 125 (177)
Q Consensus 92 l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v 125 (177)
+..||+++=|++.-.++-+..++.++++..+..+
T Consensus 119 ~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V 152 (187)
T PRK13810 119 LKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYI 152 (187)
T ss_pred CCCcCEEEEEEeccCCChHHHHHHHHHHHCCCEE
Confidence 7899999999999999999999999999887664
No 79
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=20.98 E-value=2.2e+02 Score=21.51 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=30.8
Q ss_pred CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeE
Q psy16403 92 LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYL 125 (177)
Q Consensus 92 l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v 125 (177)
+..||+++=|++.-.++-+...+.+++++.+..+
T Consensus 114 l~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~V 147 (191)
T TIGR01744 114 LSDQDRVLIIDDFLANGQAAHGLVDIAKQAGAKI 147 (191)
T ss_pred CCCcCEEEEEEehhccChHHHHHHHHHHHCCCEE
Confidence 7799999999999999999999999999988663
Done!