Query psy16403
Match_columns 177
No_of_seqs 230 out of 2085
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 20:27:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16403.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16403hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1r6j_A Syntenin 1; PDZ, membra 99.7 5.2E-17 1.8E-21 106.6 11.7 80 21-132 2-81 (82)
2 2he4_A Na(+)/H(+) exchange reg 99.7 3.3E-16 1.1E-20 104.2 12.7 87 21-134 2-88 (90)
3 2vsp_A PDZ domain-containing p 99.7 1.2E-16 4.1E-21 106.6 8.3 88 21-135 1-88 (91)
4 1g9o_A NHE-RF; PDZ domain, com 99.7 1.4E-15 4.7E-20 101.3 13.1 87 22-135 2-88 (91)
5 3r68_A Na(+)/H(+) exchange reg 99.7 7.4E-16 2.5E-20 103.4 11.7 90 20-136 2-91 (95)
6 2ego_A General receptor for ph 99.7 2.1E-15 7.1E-20 101.6 12.5 94 21-132 2-95 (96)
7 3qe1_A Sorting nexin-27, G pro 99.7 1.6E-15 5.6E-20 104.0 11.9 102 19-135 2-104 (107)
8 2d90_A PDZ domain containing p 99.7 9.3E-16 3.2E-20 104.4 10.3 91 19-136 2-92 (102)
9 2v90_A PDZ domain-containing p 99.6 3.1E-15 1.1E-19 100.6 12.4 90 22-135 2-91 (96)
10 2yuy_A RHO GTPase activating p 99.6 1.2E-16 4.1E-21 113.0 5.5 113 19-134 4-121 (126)
11 2dkr_A LIN-7 homolog B; LIN-7B 99.6 3.8E-15 1.3E-19 99.5 11.7 88 20-133 2-90 (93)
12 2dc2_A GOPC, golgi associated 99.6 3.2E-15 1.1E-19 102.1 11.1 93 18-135 4-97 (103)
13 2iwo_A Multiple PDZ domain pro 99.6 2.1E-15 7E-20 105.9 9.8 95 18-134 19-114 (120)
14 1wi2_A Riken cDNA 2700099C19; 99.6 1.5E-14 5E-19 98.8 13.7 91 18-134 10-100 (104)
15 2f5y_A Regulator of G-protein 99.6 6E-15 2.1E-19 98.3 11.4 84 22-135 2-85 (91)
16 1qav_A Alpha-1 syntrophin (res 99.6 1.1E-14 3.7E-19 96.8 12.0 86 22-132 3-89 (90)
17 2eei_A PDZ domain-containing p 99.6 3.2E-15 1.1E-19 102.3 9.3 90 20-136 5-94 (106)
18 2fne_A Multiple PDZ domain pro 99.6 6.6E-15 2.3E-19 102.8 10.8 94 19-135 21-115 (117)
19 3i4w_A Disks large homolog 4; 99.6 1.7E-14 6E-19 98.2 12.6 88 19-133 7-95 (104)
20 3b76_A E3 ubiquitin-protein li 99.6 6.4E-15 2.2E-19 103.1 10.4 94 18-133 19-113 (118)
21 2q9v_A Membrane-associated gua 99.6 7.5E-15 2.6E-19 97.5 10.0 84 23-132 2-88 (90)
22 2d92_A INAD-like protein; PDZ 99.6 2E-14 6.9E-19 98.8 12.4 91 21-133 13-105 (108)
23 3o46_A Maguk P55 subfamily mem 99.6 2.3E-14 7.8E-19 95.8 12.0 86 22-134 3-89 (93)
24 2ehr_A INAD-like protein; PDZ 99.6 1.6E-14 5.6E-19 100.6 11.6 101 18-134 10-111 (117)
25 2kv8_A RGS12, regulator of G-p 99.6 3E-15 1E-19 98.1 7.0 82 22-133 1-82 (83)
26 2vwr_A Ligand of NUMB protein 99.6 3.6E-14 1.2E-18 95.1 12.4 87 24-135 4-91 (95)
27 4e34_A Golgi-associated PDZ an 99.6 2.8E-14 9.5E-19 94.1 11.6 84 23-131 2-86 (87)
28 3l4f_D SH3 and multiple ankyri 99.6 3.2E-14 1.1E-18 101.3 12.7 101 20-134 24-125 (132)
29 3ngh_A PDZ domain-containing p 99.6 2.7E-14 9.2E-19 97.7 11.8 86 23-134 1-86 (106)
30 2dls_A PDZ-rhogef, RHO guanine 99.6 3E-14 1E-18 95.3 11.7 84 20-134 5-88 (93)
31 1kwa_A Hcask/LIN-2 protein; PD 99.6 3.3E-14 1.1E-18 94.3 11.8 84 24-134 2-86 (88)
32 2jik_A Synaptojanin-2 binding 99.6 2.8E-14 9.5E-19 96.8 11.4 93 21-134 5-98 (101)
33 1n7e_A AMPA receptor interacti 99.6 7.3E-14 2.5E-18 94.1 13.0 87 22-134 4-91 (97)
34 2awx_A Synapse associated prot 99.6 4.7E-14 1.6E-18 96.4 12.2 94 22-136 2-96 (105)
35 2fe5_A Presynaptic protein SAP 99.6 6.8E-14 2.3E-18 93.5 12.8 90 23-133 3-93 (94)
36 2vsv_A Rhophilin-2; scaffold p 99.6 3.2E-14 1.1E-18 98.2 11.3 83 22-134 22-105 (109)
37 1d5g_A Human phosphatase HPTP1 99.6 9.8E-14 3.4E-18 93.1 13.4 89 22-133 4-93 (96)
38 1uhp_A Hypothetical protein KI 99.6 3.4E-14 1.2E-18 97.4 11.3 96 21-134 6-102 (107)
39 2uzc_A Human pdlim5, PDZ and L 99.6 4.6E-14 1.6E-18 93.3 11.5 83 24-133 4-86 (88)
40 1m5z_A GRIP, AMPA receptor int 99.6 1.1E-13 3.7E-18 92.0 13.2 87 21-132 4-90 (91)
41 1uep_A Membrane associated gua 99.6 9.5E-15 3.3E-19 99.6 8.2 88 21-134 7-97 (103)
42 2jxo_A Ezrin-radixin-moesin-bi 99.6 5.5E-14 1.9E-18 94.8 11.9 89 17-132 3-92 (98)
43 2dlu_A INAD-like protein; PDZ 99.6 4.1E-14 1.4E-18 97.6 11.3 90 18-135 10-100 (111)
44 2i04_A Membrane-associated gua 99.6 6.3E-14 2.2E-18 92.0 11.6 81 25-131 2-85 (85)
45 2qg1_A Multiple PDZ domain pro 99.6 8.7E-14 3E-18 92.6 12.4 85 23-133 4-89 (92)
46 1ihj_A INAD; intermolecular di 99.6 6.4E-14 2.2E-18 94.4 11.8 93 22-133 4-97 (98)
47 3khf_A Microtubule-associated 99.6 2.6E-14 8.8E-19 96.6 9.9 93 25-136 4-96 (99)
48 2pa1_A PDZ and LIM domain prot 99.6 7E-14 2.4E-18 92.2 11.7 82 27-133 4-85 (87)
49 3hpk_A Protein interacting wit 99.6 7.1E-14 2.4E-18 98.4 12.4 90 20-134 16-106 (125)
50 2r4h_A Membrane-associated gua 99.6 6.1E-14 2.1E-18 97.0 11.5 88 20-133 21-109 (112)
51 1v62_A KIAA1719 protein; struc 99.6 9.8E-14 3.3E-18 96.7 12.6 94 19-136 11-105 (117)
52 2eno_A Synaptojanin-2-binding 99.6 7.3E-14 2.5E-18 97.7 12.1 94 20-134 14-108 (120)
53 1va8_A Maguk P55 subfamily mem 99.6 1.2E-13 4E-18 95.7 13.0 86 22-135 24-110 (113)
54 1i16_A Interleukin 16, LCF; cy 99.6 2.3E-14 8E-19 101.7 9.5 91 20-133 26-118 (130)
55 1wha_A KIAA0147 protein, scrib 99.6 4.6E-14 1.6E-18 96.4 10.7 94 21-134 5-99 (105)
56 2opg_A Multiple PDZ domain pro 99.6 1.2E-13 4E-18 93.1 12.6 88 23-135 4-92 (98)
57 2djt_A Unnamed protein product 99.5 1E-13 3.5E-18 94.4 12.2 91 20-134 8-99 (104)
58 2eeg_A PDZ and LIM domain prot 99.5 8.1E-14 2.8E-18 93.3 11.5 86 22-134 7-92 (94)
59 2ejy_A 55 kDa erythrocyte memb 99.5 5.9E-14 2E-18 94.9 10.8 84 22-132 11-95 (97)
60 1ueq_A Membrane associated gua 99.5 1.8E-13 6.1E-18 96.2 13.6 87 22-134 18-107 (123)
61 2i1n_A Discs, large homolog 3; 99.5 1.2E-13 4E-18 93.8 12.3 90 24-134 5-95 (102)
62 3cbz_A Dishevelled-2; PDZ doma 99.5 2.8E-14 9.6E-19 98.2 9.2 91 21-134 3-97 (108)
63 1rgw_A ZAsp protein; PDZ, cyph 99.5 6.1E-14 2.1E-18 92.0 10.2 83 24-133 2-84 (85)
64 1uew_A Membrane associated gua 99.5 1.3E-13 4.5E-18 95.5 12.2 97 20-134 7-104 (114)
65 2byg_A Channel associated prot 99.5 1E-13 3.6E-18 96.7 11.5 92 21-133 22-114 (117)
66 1q3o_A Shank1; PDZ, GKAP, pept 99.5 2.1E-13 7.2E-18 93.7 12.9 97 23-132 7-103 (109)
67 1tp5_A Presynaptic density pro 99.5 1.5E-13 5.2E-18 95.8 12.3 89 19-134 10-99 (119)
68 1ufx_A KIAA1526 protein; PDZ d 99.5 8.2E-14 2.8E-18 95.1 10.7 87 22-133 5-97 (103)
69 3gge_A PDZ domain-containing p 99.5 1.8E-13 6.2E-18 91.7 12.0 84 22-133 4-90 (95)
70 2jil_A GRIP1 protein, glutamat 99.5 1.2E-13 4.1E-18 92.9 11.2 89 24-134 4-93 (97)
71 2kpk_A Membrane-associated gua 99.5 1.3E-13 4.6E-18 97.6 11.9 86 22-133 17-105 (129)
72 1wi4_A Synip, syntaxin binding 99.5 1.9E-13 6.5E-18 94.2 12.2 90 20-134 12-106 (109)
73 1um1_A KIAA1849 protein, RSGI 99.5 2.6E-13 9E-18 93.3 12.9 92 21-135 6-98 (110)
74 2gzv_A PRKCA-binding protein; 99.5 2.8E-13 9.6E-18 94.1 13.1 89 20-133 21-110 (114)
75 2o2t_A Multiple PDZ domain pro 99.5 6.3E-14 2.1E-18 97.5 9.8 94 20-135 17-112 (117)
76 2q3g_A PDZ and LIM domain prot 99.5 1.3E-13 4.4E-18 91.3 10.6 83 25-134 5-87 (89)
77 1uju_A Scribble; PDZ domain, c 99.5 2.9E-14 9.9E-19 98.4 7.5 98 20-133 6-104 (111)
78 3nfk_A Tyrosine-protein phosph 99.5 1.4E-13 4.8E-18 94.2 10.9 86 21-131 15-106 (107)
79 1nf3_C PAR-6B; semi-CRIB motif 99.5 2.5E-13 8.5E-18 96.1 12.5 101 19-134 25-126 (128)
80 1x5q_A LAP4 protein; PDZ domai 99.5 7E-13 2.4E-17 91.2 14.4 96 20-135 12-107 (110)
81 2fcf_A Multiple PDZ domain pro 99.5 3.4E-13 1.2E-17 91.6 12.6 98 22-135 3-101 (103)
82 2pkt_A PDZ and LIM domain prot 99.5 2.1E-13 7.3E-18 90.6 11.4 84 24-134 4-87 (91)
83 2db5_A INAD-like protein; PDZ 99.5 1.2E-13 4E-18 97.7 10.6 93 20-134 22-116 (128)
84 3e17_A Tight junction protein 99.5 1.8E-13 6.1E-18 90.7 10.8 79 26-134 3-82 (88)
85 2e7k_A Maguk P55 subfamily mem 99.5 9.8E-14 3.3E-18 92.5 9.5 85 20-133 3-88 (91)
86 2z17_A Pleckstrin homology SEC 99.5 1.1E-13 3.8E-18 94.3 9.8 95 17-129 9-103 (104)
87 3axa_A Afadin, nectin-3, prote 99.5 3.7E-13 1.3E-17 92.0 12.5 90 22-135 10-100 (106)
88 2daz_A INAD-like protein; PDZ 99.5 2.2E-13 7.7E-18 95.8 11.6 90 21-135 23-113 (124)
89 2eeh_A PDZ domain-containing p 99.5 3.9E-13 1.3E-17 91.0 12.2 89 21-135 8-96 (100)
90 2cs5_A Tyrosine-protein phosph 99.5 8.8E-14 3E-18 97.1 9.2 89 20-133 12-106 (119)
91 1q7x_A PDZ2B domain of PTP-BAS 99.5 1.6E-13 5.4E-18 94.1 10.3 96 21-134 7-103 (108)
92 1um7_A Synapse-associated prot 99.5 1.6E-13 5.5E-18 94.7 9.8 89 19-134 11-100 (113)
93 1ujd_A KIAA0559 protein; PDZ d 99.5 3.5E-13 1.2E-17 93.9 11.6 95 21-134 10-110 (117)
94 2iwq_A Multiple PDZ domain pro 99.5 5.4E-13 1.9E-17 93.8 12.6 101 18-134 19-120 (123)
95 2dm8_A INAD-like protein; PDZ 99.5 3.3E-13 1.1E-17 93.6 11.3 91 20-135 14-105 (116)
96 3bpu_A Membrane-associated gua 99.5 2.3E-13 7.8E-18 89.9 9.9 82 23-133 3-86 (88)
97 1y7n_A Amyloid beta A4 precurs 99.5 6.2E-13 2.1E-17 88.5 12.0 80 22-132 10-89 (90)
98 2kjd_A Sodium/hydrogen exchang 99.5 6E-13 2.1E-17 93.8 12.5 88 19-133 5-93 (128)
99 2edz_A PDZ domain-containing p 99.5 5E-13 1.7E-17 92.6 11.7 87 22-134 12-98 (114)
100 2w4f_A Protein LAP4; structura 99.5 7.9E-13 2.7E-17 88.7 12.2 92 24-135 4-95 (97)
101 1wf8_A Neurabin-I; PDZ domain, 99.5 3E-13 1E-17 92.6 10.3 92 23-134 9-101 (107)
102 1wf7_A Enigma homologue protei 99.5 2.9E-13 9.8E-18 92.1 9.8 86 22-134 4-89 (103)
103 1x6d_A Interleukin-16; PDZ dom 99.5 6E-13 2E-17 92.8 11.6 90 21-134 13-104 (119)
104 4amh_A Disks large homolog 1; 99.5 5.9E-13 2E-17 91.2 11.4 62 74-135 32-94 (106)
105 1whd_A RGS3, regulator of G-pr 99.5 2.8E-13 9.6E-18 91.8 9.4 84 20-133 12-95 (100)
106 2edv_A FERM and PDZ domain-con 99.5 6.7E-14 2.3E-18 94.2 6.1 85 20-133 5-89 (96)
107 3k1r_A Harmonin; protein-prote 99.5 6.2E-13 2.1E-17 100.3 12.1 89 20-134 81-169 (192)
108 1z87_A Alpha-1-syntrophin; pro 99.5 2.9E-13 1E-17 106.7 10.7 88 22-134 76-164 (263)
109 1v5q_A GRIP1 homolog, glutamat 99.5 5.4E-13 1.8E-17 93.6 10.7 94 21-135 13-109 (122)
110 2jre_A C60-1 PDZ domain peptid 99.5 1.1E-12 3.7E-17 89.9 11.8 94 22-134 11-105 (108)
111 3egg_C Spinophilin; PP1, serin 99.5 7.3E-13 2.5E-17 98.2 11.6 89 24-132 81-170 (170)
112 1vae_A Rhophilin 2, rhophilin, 99.5 6E-14 2E-18 97.1 5.3 83 20-132 12-95 (111)
113 1wfv_A Membrane associated gua 99.5 1.4E-13 4.8E-18 93.5 7.1 88 22-135 10-98 (103)
114 2dmz_A INAD-like protein; PDZ 99.5 9.9E-13 3.4E-17 93.0 11.4 94 21-134 13-107 (129)
115 1vb7_A PDZ and LIM domain 2; P 99.5 2.9E-13 9.8E-18 90.6 8.2 61 74-134 30-90 (94)
116 3kzd_A TIAM-1, T-lymphoma inva 99.4 7.8E-13 2.7E-17 88.7 10.1 85 21-130 4-89 (94)
117 2koj_A Partitioning defective 99.4 1.8E-12 6.2E-17 89.2 12.2 90 23-135 11-103 (111)
118 2yt7_A Amyloid beta A4 precurs 99.4 1.3E-12 4.5E-17 88.6 11.3 90 20-132 6-98 (101)
119 3soe_A Membrane-associated gua 99.4 1.1E-12 3.8E-17 90.8 11.0 83 22-135 11-95 (113)
120 2edp_A Fragment, shroom family 99.4 5.3E-13 1.8E-17 90.4 9.2 91 19-135 5-96 (100)
121 2h2b_A Tight junction protein 99.4 1.5E-12 5.3E-17 89.0 11.5 93 22-134 6-98 (107)
122 2g5m_B Neurabin-2; spinophilin 99.4 5.3E-13 1.8E-17 92.2 9.0 92 24-135 5-97 (113)
123 2csj_A TJP2 protein; PDZ domai 99.4 8.2E-13 2.8E-17 91.9 10.0 92 23-134 14-105 (117)
124 1uez_A KIAA1526 protein; PDZ d 99.4 5.3E-13 1.8E-17 90.4 8.8 89 20-133 5-93 (101)
125 1wg6_A Hypothetical protein (r 99.4 3.7E-13 1.3E-17 95.2 8.0 60 75-134 56-123 (127)
126 3cyy_A Tight junction protein 99.4 4E-12 1.4E-16 84.4 12.6 82 23-134 2-84 (92)
127 2qkv_A Inactivation-NO-after-p 99.4 3.5E-12 1.2E-16 85.7 11.9 84 22-133 7-91 (96)
128 1wfg_A Regulating synaptic mem 99.4 2.5E-12 8.5E-17 91.4 11.7 60 74-133 65-127 (131)
129 2kom_A Partitioning defective 99.4 5.2E-12 1.8E-16 88.5 12.9 88 23-133 30-120 (121)
130 1mfg_A ERB-B2 interacting prot 99.4 3.4E-12 1.2E-16 85.4 11.3 89 25-133 5-93 (95)
131 2iwn_A Multiple PDZ domain pro 99.4 3.3E-12 1.1E-16 85.5 11.2 87 25-133 6-93 (97)
132 3r0h_A INAD, inactivation-NO-a 99.4 5.9E-12 2E-16 95.3 13.6 98 14-135 9-110 (206)
133 3gsl_A Disks large homolog 4; 99.4 2.8E-12 9.7E-17 96.0 11.5 91 22-133 4-95 (196)
134 2vz5_A TAX1-binding protein 3; 99.4 3.2E-12 1.1E-16 91.7 10.7 106 19-136 19-127 (139)
135 2la8_A Inactivation-NO-after-p 99.4 2.6E-12 9E-17 88.0 9.7 82 25-134 4-86 (106)
136 3qik_A Phosphatidylinositol 3, 99.4 4.8E-12 1.7E-16 85.6 10.7 79 24-131 18-99 (101)
137 1b8q_A Protein (neuronal nitri 99.4 2.2E-12 7.4E-17 90.9 9.4 91 20-136 5-97 (127)
138 1n7t_A 99-MER peptide of densi 99.4 3.7E-12 1.3E-16 86.5 10.1 92 22-133 10-101 (103)
139 1uit_A Human discs large 5 pro 99.4 5E-12 1.7E-16 87.8 10.9 85 22-134 18-102 (117)
140 2qt5_A Glutamate receptor-inte 99.4 5.3E-12 1.8E-16 95.3 12.0 89 20-133 4-93 (200)
141 1qau_A Neuronal nitric oxide s 99.4 8.6E-12 2.9E-16 85.9 12.0 86 25-136 3-90 (112)
142 1ujv_A Membrane associated gua 99.4 1.3E-11 4.4E-16 83.0 12.6 83 21-134 8-92 (96)
143 2lob_A Golgi-associated PDZ an 99.1 4.2E-14 1.4E-18 98.0 0.0 87 19-130 23-110 (112)
144 1x5n_A Harmonin; PDZ domain, u 99.4 8E-12 2.7E-16 86.4 11.6 87 20-132 12-98 (114)
145 1wif_A RSGI RUH-020, riken cDN 99.4 6.3E-12 2.1E-16 88.8 10.2 81 23-132 27-110 (126)
146 1v5l_A PDZ and LIM domain 3; a 99.4 6.7E-13 2.3E-17 90.3 4.9 62 75-136 30-91 (103)
147 2rcz_A Tight junction protein 99.4 1.9E-11 6.5E-16 79.0 11.6 58 75-132 22-80 (81)
148 2d8i_A T-cell lymphoma invasio 99.3 3.1E-12 1E-16 88.9 8.1 90 20-134 12-102 (114)
149 3tsv_A Tight junction protein 99.3 2.1E-11 7.1E-16 85.8 12.4 61 74-134 51-113 (124)
150 1uf1_A KIAA1526 protein; PDZ d 99.3 1.6E-10 5.4E-15 81.4 16.1 88 22-135 19-106 (128)
151 2krg_A Na(+)/H(+) exchange reg 99.3 3.1E-12 1.1E-16 98.2 7.8 87 20-133 6-93 (216)
152 1wh1_A KIAA1095 protein; PDZ d 99.3 1.4E-11 4.7E-16 86.6 10.4 92 21-136 17-110 (124)
153 1v6b_A Harmonin isoform A1; st 99.3 1.4E-11 4.7E-16 85.9 10.4 86 23-134 18-108 (118)
154 3sfj_A TAX1-binding protein 3; 99.3 2.3E-11 7.8E-16 82.6 11.2 60 73-132 44-104 (104)
155 2eaq_A LIM domain only protein 99.3 2E-11 6.9E-16 80.7 10.4 60 74-133 28-89 (90)
156 1p1d_A PDZ45, glutamate recept 99.3 2.7E-11 9.3E-16 91.3 11.3 92 22-134 5-99 (196)
157 3gsl_A Disks large homolog 4; 99.3 2.6E-11 8.8E-16 90.7 10.5 91 24-135 101-192 (196)
158 1w9e_A Syntenin 1; cell adhesi 99.3 1.7E-10 5.8E-15 84.7 13.6 83 22-133 3-86 (166)
159 2qbw_A PDZ-fibronectin fusion 99.2 4.1E-11 1.4E-15 90.0 10.0 58 73-131 23-80 (195)
160 2yub_A LIMK-2, LIM domain kina 99.2 1E-10 3.4E-15 81.6 10.0 62 74-135 44-107 (118)
161 3shw_A Tight junction protein 99.2 1.3E-10 4.3E-15 98.4 11.5 81 24-133 2-84 (468)
162 3r0h_A INAD, inactivation-NO-a 99.2 1.9E-10 6.5E-15 87.0 11.2 61 74-134 136-197 (206)
163 2xkx_A Disks large homolog 4; 99.2 3E-10 1E-14 100.9 12.5 91 22-133 58-149 (721)
164 3tsz_A Tight junction protein 99.1 3.9E-10 1.3E-14 93.7 12.0 83 22-133 8-92 (391)
165 2l97_A HTRA, putative serine p 99.1 4.3E-10 1.5E-14 80.0 9.8 59 74-135 57-117 (134)
166 2qt5_A Glutamate receptor-inte 99.1 6.9E-10 2.4E-14 83.6 10.9 60 74-133 135-195 (200)
167 2xkx_A Disks large homolog 4; 99.1 1.2E-09 4E-14 97.2 12.2 84 23-133 307-391 (721)
168 2i6v_A General secretion pathw 99.0 1.3E-09 4.4E-14 71.7 7.9 58 75-134 20-79 (87)
169 1p1d_A PDZ45, glutamate recept 99.0 3.8E-09 1.3E-13 79.4 11.5 60 74-133 135-195 (196)
170 3suz_A Amyloid beta A4 precurs 99.0 8.7E-10 3E-14 91.5 7.3 94 19-135 200-296 (388)
171 2pzd_A Serine protease HTRA2; 99.0 3.7E-09 1.3E-13 72.6 9.1 58 74-134 35-92 (113)
172 3id1_A Regulator of sigma E pr 99.0 3.2E-09 1.1E-13 71.1 8.4 57 76-134 4-62 (95)
173 3i18_A LMO2051 protein; alpha- 99.0 4.2E-09 1.4E-13 71.0 9.0 59 74-135 7-67 (100)
174 2kjp_A Uncharacterized protein 98.9 5.5E-10 1.9E-14 74.3 3.4 58 75-135 2-61 (91)
175 2zpm_A Regulator of sigma E pr 98.9 4E-09 1.4E-13 69.6 7.2 57 76-134 6-63 (91)
176 2kl1_A YLBL protein; structure 98.9 2.6E-09 9.1E-14 71.3 6.1 59 74-135 5-65 (94)
177 3stj_A Protease DEGQ; serine p 98.9 1.4E-08 4.7E-13 83.0 11.3 99 36-136 213-325 (345)
178 2p3w_A Probable serine proteas 98.9 7.3E-09 2.5E-13 71.1 8.2 58 74-134 35-92 (112)
179 2i4s_A General secretion pathw 98.8 1.5E-08 5.1E-13 68.9 7.2 58 75-134 38-97 (105)
180 1fc6_A Photosystem II D1 prote 98.8 6E-08 2E-12 80.3 11.1 91 44-134 64-160 (388)
181 1y8t_A Hypothetical protein RV 98.7 6.2E-08 2.1E-12 78.2 9.9 73 60-135 229-304 (324)
182 1w9e_A Syntenin 1; cell adhesi 98.7 2.2E-07 7.7E-12 67.9 11.9 55 77-131 110-164 (166)
183 3pv2_A DEGQ; trypsin fold, PDZ 98.7 7.9E-08 2.7E-12 81.1 10.7 61 74-136 282-344 (451)
184 4a8c_A Periplasmic PH-dependen 98.7 8.1E-08 2.8E-12 80.7 10.3 62 73-136 262-325 (436)
185 1te0_A Protease DEGS; two doma 98.7 7.7E-08 2.6E-12 77.5 8.6 61 73-135 243-305 (318)
186 2hga_A Conserved protein MTH13 98.7 9.5E-08 3.2E-12 67.0 8.0 57 74-134 25-83 (125)
187 3suz_A Amyloid beta A4 precurs 98.6 4E-09 1.4E-13 87.5 0.3 56 77-132 318-373 (388)
188 1lcy_A HTRA2 serine protease; 98.6 1.2E-07 4.2E-12 76.7 9.0 59 74-135 256-314 (325)
189 4a8c_A Periplasmic PH-dependen 98.6 1.4E-07 4.7E-12 79.3 9.3 61 74-136 363-423 (436)
190 3qo6_A Protease DO-like 1, chl 98.6 8.8E-08 3E-12 78.2 7.7 60 74-135 251-323 (348)
191 3rle_A Golgi reassembly-stacki 98.6 1.8E-07 6.1E-12 71.1 8.4 59 74-134 16-77 (209)
192 3rle_A Golgi reassembly-stacki 98.6 8.9E-08 3E-12 72.8 6.3 59 74-135 112-172 (209)
193 3pv2_A DEGQ; trypsin fold, PDZ 98.5 1.9E-07 6.6E-12 78.8 8.3 60 74-135 386-445 (451)
194 3k50_A Putative S41 protease; 98.4 3.2E-07 1.1E-11 76.4 6.7 56 76-134 92-147 (403)
195 3num_A Serine protease HTRA1; 98.3 8E-08 2.7E-12 77.9 0.0 59 74-135 254-312 (332)
196 4fgm_A Aminopeptidase N family 98.3 1.9E-06 6.6E-11 75.0 7.6 60 74-136 496-557 (597)
197 1ky9_A Protease DO, DEGP, HTRA 98.2 6.2E-07 2.1E-11 75.6 2.6 60 74-135 286-347 (448)
198 1ky9_A Protease DO, DEGP, HTRA 98.1 5E-07 1.7E-11 76.2 0.0 59 74-134 383-441 (448)
199 4fln_A Protease DO-like 2, chl 98.1 1.8E-05 6.1E-10 68.1 9.5 63 73-136 276-348 (539)
200 1k32_A Tricorn protease; prote 97.9 2.2E-05 7.4E-10 71.8 7.3 59 74-135 748-817 (1045)
201 4fln_A Protease DO-like 2, chl 97.4 0.00053 1.8E-08 58.9 8.5 49 74-124 415-463 (539)
202 3dor_A Protein CT_858, CPAF; m 36.1 35 0.0012 29.5 4.1 28 76-107 98-125 (583)
203 2k5n_A Putative cold-shock pro 21.3 86 0.0029 18.9 3.0 16 27-44 7-22 (74)
No 1
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Probab=99.73 E-value=5.2e-17 Score=106.60 Aligned_cols=80 Identities=19% Similarity=0.443 Sum_probs=72.0
Q ss_pred CCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEEE
Q psy16403 21 QLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVA 100 (177)
Q Consensus 21 ~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~ 100 (177)
+..||+|+|+|.. ..+|||++.. + .|..+.+++||+++||+.||+|++
T Consensus 2 ~~~~r~v~l~k~~-~g~~Gf~i~~------------------------------g-~I~~v~~gspA~~aGl~~GD~Il~ 49 (82)
T 1r6j_A 2 AMDPRTITMHKDS-TGHVGFIFKN------------------------------G-KITSIVKDSSAARNGLLTEHNICE 49 (82)
T ss_dssp TTCCEEEEEECCT-TSCCCEEEET------------------------------T-EEEEECTTSHHHHHTCCSSEEEEE
T ss_pred CCceEEEEEEECC-CCCeEEEEEC------------------------------C-EEEEecCCCHHHHcCCCCCCEEEE
Confidence 4678999999987 4579999875 1 478899999999999999999999
Q ss_pred ECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy16403 101 VNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK 132 (177)
Q Consensus 101 Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~ 132 (177)
|||+++.++++++++++|+..+.++.|++++.
T Consensus 50 VNG~~v~~~~~~evv~llr~~g~~V~L~v~p~ 81 (82)
T 1r6j_A 50 INGQNVIGLKDSQIADILSTSGTVVTITIMPA 81 (82)
T ss_dssp ETTEECTTCCHHHHHHHHHHSCSEEEEEEEEC
T ss_pred ECCEEcCCCCHHHHHHHHhcCCCEEEEEEEeC
Confidence 99999999999999999998899999998763
No 2
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=99.70 E-value=3.3e-16 Score=104.20 Aligned_cols=87 Identities=38% Similarity=0.533 Sum_probs=76.4
Q ss_pred CCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEEE
Q psy16403 21 QLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVA 100 (177)
Q Consensus 21 ~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~ 100 (177)
++++|+|+|.|+. .+|||++... .. ..+++|..|.++|||+++||++||+|++
T Consensus 2 ~~~~r~v~l~k~~--~g~G~~~~~~-------------~~------------~~gv~V~~V~~~spA~~aGl~~GD~I~~ 54 (90)
T 2he4_A 2 MLRPRLCHLRKGP--QGYGFNLHSD-------------KS------------RPGQYIRSVDPGSPAARSGLRAQDRLIE 54 (90)
T ss_dssp TTCCEEEEEECBT--TBCCEEEEEC-------------SS------------SSSEEEEEECTTSHHHHHTCCTTCEEEE
T ss_pred CCCcEEEEEEECC--CCccEEEEcc-------------CC------------CCCEEEEEECCCChHHHCCCCCCCEEEE
Confidence 5689999999998 8999999862 11 2468999999999999999999999999
Q ss_pred ECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 101 VNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 101 Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
|||.++.+.++.++..+++..+..+.|++.|.+.
T Consensus 55 ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~ 88 (90)
T 2he4_A 55 VNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 88 (90)
T ss_dssp ETTEECTTSCHHHHHHHHTTSSSEEEEEEECCCC
T ss_pred ECCEECCCCCHHHHHHHHHcCCCcEEEEEEccCC
Confidence 9999999888899999999888889999988654
No 3
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=99.68 E-value=1.2e-16 Score=106.61 Aligned_cols=88 Identities=35% Similarity=0.540 Sum_probs=72.4
Q ss_pred CCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEEE
Q psy16403 21 QLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVA 100 (177)
Q Consensus 21 ~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~ 100 (177)
|+.||+|+|.|++ .+|||++... . ...+++|..|.++|||+++||+.||+|++
T Consensus 1 ~~~pr~v~l~k~~--~~~G~~l~~~-------------~------------~~~g~~V~~V~~~spA~~aGl~~GD~I~~ 53 (91)
T 2vsp_A 1 SMKPKLCRLAKGE--NGYGFHLNAI-------------R------------GLPGSFIKEVQKGGPADLAGLEDEDVIIE 53 (91)
T ss_dssp -CCEEEEEEECBT--TBTSCCCBCC-------------T------------TCSCCBC-CCCTTSHHHHTTCCTTCEEEE
T ss_pred CCCcEEEEEEeCC--CcccEEEEec-------------c------------CCCCeEEEEECCCChHHHcCCCCCCEEEE
Confidence 4689999999998 7899988651 1 12367899999999999999999999999
Q ss_pred ECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Q psy16403 101 VNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135 (177)
Q Consensus 101 Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~ 135 (177)
|||+++.+++++++..+++..+..+.|++.|.+..
T Consensus 54 ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~~ 88 (91)
T 2vsp_A 54 VNGVNVLDEPYEKVVDRIQSSGKNVTLLVCGKKAQ 88 (91)
T ss_dssp ETTEECTTSCHHHHHHHHTTSCSEEEEEEEC----
T ss_pred ECCEECCCCCHHHHHHHHHcCCCEEEEEEEeCCcc
Confidence 99999998999999999987788899999886554
No 4
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=99.68 E-value=1.4e-15 Score=101.31 Aligned_cols=87 Identities=37% Similarity=0.541 Sum_probs=74.5
Q ss_pred CCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEEEE
Q psy16403 22 LGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAV 101 (177)
Q Consensus 22 ~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~I 101 (177)
-.||+|+|.|++ .+|||++... .. ..+++|..|.++|||+++||+.||+|++|
T Consensus 2 ~~~r~v~l~r~~--~g~G~~~~~~-------------~~------------~~g~~V~~V~~~spA~~aGL~~GD~I~~i 54 (91)
T 1g9o_A 2 MLPRLCCLEKGP--NGYGFHLHGE-------------KG------------KLGQYIRLVEPGSPAEKAGLLAGDRLVEV 54 (91)
T ss_dssp CCCEEEEEECBT--TBCCEEEEEC-------------TT------------CSSEEEEEECTTSHHHHTTCCTTCEEEEE
T ss_pred CccEEEEEEeCC--CcccEEEEec-------------CC------------CCCEEEEEECCCCHHHHCCCCCCCEEEEE
Confidence 368999999999 7999999762 11 14689999999999999999999999999
Q ss_pred CCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Q psy16403 102 NNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135 (177)
Q Consensus 102 ng~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~ 135 (177)
||.++.++++.++..+++..++.+.+.+++++.+
T Consensus 55 ng~~v~~~~~~~~~~~l~~~~~~~~~~~~~r~~~ 88 (91)
T 1g9o_A 55 NGENVEKETHQQVVSRIRAALNAVRLLVVDPETD 88 (91)
T ss_dssp TTEECTTCCHHHHHHHHHTCSSEEEEEEECCCCS
T ss_pred CCEECCCCCHHHHHHHHHcCCCcEEEEEEcCCcc
Confidence 9999998889999999998878877777766544
No 5
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=99.67 E-value=7.4e-16 Score=103.37 Aligned_cols=90 Identities=37% Similarity=0.543 Sum_probs=76.2
Q ss_pred CCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEE
Q psy16403 20 QQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVV 99 (177)
Q Consensus 20 ~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~ 99 (177)
.+..||+++|.|+. .+|||.+... .. ..+++|..|.++|||+++||+.||+|+
T Consensus 2 sp~~~r~v~l~~~~--~~~G~~l~~~-------------~~------------~~~~~V~~v~~~spA~~aGl~~GD~I~ 54 (95)
T 3r68_A 2 SPHQPRVVVIKKGS--NGYGFYLRAG-------------PE------------QKGQIIKDIEPGSPAEAAGLKNNDLVV 54 (95)
T ss_dssp CCCCCEEEEEECBT--TBCSCEEEEC---------------------------CCSEEEECCCTTSHHHHHTCCTTEEEE
T ss_pred CCCCcEEEEEecCC--CcccEEEEec-------------CC------------CCCEEEEEECCCCHHHHCCCCCCCEEE
Confidence 35788999999988 8999998762 11 136899999999999999999999999
Q ss_pred EECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCcce
Q psy16403 100 AVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 136 (177)
Q Consensus 100 ~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~~ 136 (177)
+|||.++.+.++.++..+++..++.+.+++++.+.+.
T Consensus 55 ~ing~~v~~~~~~~~~~~l~~~~~~~~~~~~r~~~~~ 91 (95)
T 3r68_A 55 AVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKELER 91 (95)
T ss_dssp EETTEECTTCCHHHHHHHHHTTTTEEEEEEEECC---
T ss_pred EECCEECCCCCHHHHHHHHHhCCCeEEEEEECCcccc
Confidence 9999999988889999999998899999888876543
No 6
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=99.66 E-value=2.1e-15 Score=101.59 Aligned_cols=94 Identities=27% Similarity=0.413 Sum_probs=74.8
Q ss_pred CCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEEE
Q psy16403 21 QLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVA 100 (177)
Q Consensus 21 ~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~ 100 (177)
|+.+|+|+|.|.+ ..+|||++.+... . ...+.....+++|..|.++|||+++||+.||+|++
T Consensus 2 ~~~~r~v~l~k~~-~~~~Gf~l~~~g~------------~-----~~~~~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~ 63 (96)
T 2ego_A 2 SQQRKVLTLEKGD-NQTFGFEIQTYGL------------H-----HREEQRVEMVTFVARVHESSPAQLAGLTPGDTIAS 63 (96)
T ss_dssp CCCEEEEEEECCT-TCCCSEEEEEEEC------------------------CCEEEEEEEECTTCHHHHTTCCTTCEEEE
T ss_pred CCccEEEEEEeCC-CCCccEEEEeccc------------c-----ccCCCCCCCCeEEEEECCCChHHHcCCCCCCEEEE
Confidence 5788999999988 6799999985100 0 00011122468999999999999999999999999
Q ss_pred ECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy16403 101 VNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK 132 (177)
Q Consensus 101 Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~ 132 (177)
|||.++.+++++++..+++..++.+.|++++.
T Consensus 64 ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~ 95 (96)
T 2ego_A 64 VNGLNVEGIRHREIVDIIKASGNVLRLETLYG 95 (96)
T ss_dssp ETTEECTTCCHHHHHHHHHHTTTEEEEEEECC
T ss_pred ECCEECCCCCHHHHHHHHHhCCCeEEEEEEEC
Confidence 99999998889999999998888888888753
No 7
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel 3 chimera; PDZ domain, PDZ binding, GIRK3 regulation, early endosomes; 1.68A {Rattus norvegicus} SCOP: b.36.1.0 PDB: 3qdo_A 3qgl_A
Probab=99.66 E-value=1.6e-15 Score=103.97 Aligned_cols=102 Identities=27% Similarity=0.339 Sum_probs=76.7
Q ss_pred CCCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCccccee-eeeccCCCCceEEEeeCCCCHHhHcCCCCCCE
Q psy16403 19 SQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLR-SRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDR 97 (177)
Q Consensus 19 ~~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~-~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~ 97 (177)
+.|..||+|+|.|.. .+|||++... ....+.- ...+....+.++|..|.++|||+++||+.||+
T Consensus 2 s~~~~~r~v~l~k~~--~g~G~~l~~~-------------~~~~~~~~~~~~~~~~p~~~V~~v~~~spA~~aGl~~GD~ 66 (107)
T 3qe1_A 2 SHGGSPRVVRIVKSE--SGYGFNVRGQ-------------VSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDR 66 (107)
T ss_dssp ----CCEEEEEECBT--TBTCEEEECC-------------SSSCCCCEESSSSEESCCEEEEEECTTSHHHHHTCCTTCE
T ss_pred CCCCCcEEEEEEECC--CCCCEEEEcc-------------cccCCcceeccccccCCceEEEEECCCCHHHHcCCCCCCE
Confidence 467889999999998 7999999862 1111100 00011112345799999999999999999999
Q ss_pred EEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Q psy16403 98 VVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135 (177)
Q Consensus 98 I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~ 135 (177)
|++|||.++.++++.++..+++..++.+.|++.|...+
T Consensus 67 I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~~ 104 (107)
T 3qe1_A 67 ILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSVESE 104 (107)
T ss_dssp EEEETTEECTTCCHHHHHHHHHHCSSEEEEEEECSSCC
T ss_pred EEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEcCCCC
Confidence 99999999999999999999998888999999886543
No 8
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.65 E-value=9.3e-16 Score=104.37 Aligned_cols=91 Identities=36% Similarity=0.519 Sum_probs=78.2
Q ss_pred CCCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEE
Q psy16403 19 SQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRV 98 (177)
Q Consensus 19 ~~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I 98 (177)
+....||+|+|.|+. .+|||.+... . ...+++|..|.++|||+++||+.||+|
T Consensus 2 s~~~~~r~v~l~k~~--~g~G~~l~~~-------------~------------~~~g~~V~~V~~~spA~~aGl~~GD~I 54 (102)
T 2d90_A 2 SSGSSGRVVVIKKGS--NGYGFYLRAG-------------P------------EQKGQIIKDIEPGSPAEAAGLKNNDLV 54 (102)
T ss_dssp CSCSSSEEEEEECCS--SSSSCEEEEC-------------S------------SSSSEEEECCCTTSTTTTTTCCTTCEE
T ss_pred CCCCCCEEEEEeeCC--CCccEEEEee-------------c------------CCCCEEEEEECCCCHHHHcCCCCCCEE
Confidence 456789999999988 8999999851 1 124689999999999999999999999
Q ss_pred EEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCcce
Q psy16403 99 VAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 136 (177)
Q Consensus 99 ~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~~ 136 (177)
++|||+++.++++.++...++..+..+.|++.|++...
T Consensus 55 ~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~~~ 92 (102)
T 2d90_A 55 VAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKEAES 92 (102)
T ss_dssp EEESSCBCTTSCHHHHHHHHHHSTTEEEEEECSTTCCC
T ss_pred EEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCCce
Confidence 99999999988899999999888888999998876554
No 9
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=99.65 E-value=3.1e-15 Score=100.62 Aligned_cols=90 Identities=38% Similarity=0.543 Sum_probs=76.4
Q ss_pred CCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEEEE
Q psy16403 22 LGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAV 101 (177)
Q Consensus 22 ~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~I 101 (177)
.+||+|+|.|+. .+|||++.... + .....+++|..|.++|||+++||+.||+|++|
T Consensus 2 ~~~r~v~l~k~~--~~~G~~l~~~~-----------~-----------~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~i 57 (96)
T 2v90_A 2 MKPRCLHLEKGP--QGFGFLLREEK-----------G-----------LDGRPGQFLWEVDPGLPAKKAGMQAGDRLVAV 57 (96)
T ss_dssp CCCEEEEEECBT--TBSCEEEEEEE-----------C-----------TTSCEEEEEEEECTTSHHHHTTCCTTEEEEEE
T ss_pred CCCEEEEEEeCC--CcccEEEEecc-----------C-----------CCCCCCeEEEEECCCChHHHcCCCCCCEEEEE
Confidence 478999999998 79999997621 0 11123689999999999999999999999999
Q ss_pred CCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Q psy16403 102 NNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135 (177)
Q Consensus 102 ng~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~ 135 (177)
||.++.++++.++..+++..+..+.|++.|.+..
T Consensus 58 ng~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~~ 91 (96)
T 2v90_A 58 AGESVEGLGHEETVSRIQGQGSCVSLTVVDPEAD 91 (96)
T ss_dssp TTEECTTCCHHHHHHHHHTTTTEEEEEEECCCTT
T ss_pred CCEECCCCCHHHHHHHHHcCCCEEEEEEECCCCc
Confidence 9999998889999999988888899999987654
No 10
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.2e-16 Score=113.01 Aligned_cols=113 Identities=46% Similarity=0.785 Sum_probs=85.5
Q ss_pred CCCCCceEEEEecCCCCCceeEEEeceeecCc-hhhh----hhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCC
Q psy16403 19 SQQLGPRNLILRRSAALNGFGFTLRHFIVYPP-ESYT----VLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLV 93 (177)
Q Consensus 19 ~~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~-~~~~----~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~ 93 (177)
..++.||+|+|.|+. .+|||+|.....|.+ +.+. ....+.+.|. .........+++|..|.++|||+++||+
T Consensus 4 ~~~~~~r~v~l~r~~--~g~Gf~l~~~t~y~~~~~~~~~~~~~~~G~~~G~-~~~~~~~~~gv~V~~V~~~spA~~aGL~ 80 (126)
T 2yuy_A 4 GSSGGPKTVTLKRTS--QGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGK-QRNRLEPMDTIFVKQVKEGGPAFEAGLC 80 (126)
T ss_dssp SCSSSCCCEEEECCS--SSCSCCBCCCCCCCCSSCCCSCSSSCCCCSCCCT-TSCCCCCCCCCCBCCCCSSSHHHHHTCC
T ss_pred CCCCCCEEEEEEECC--CCcceeecCccccCCHHHHHHHHHhhcCcceece-eeecccCCCCEEEEEECCCChHHHcCCC
Confidence 457889999999998 899999976444444 3332 1223333331 0001122356899999999999999999
Q ss_pred CCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 94 PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 94 ~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
+||+|++|||+++.++++.++..+++..+..+.|++.|.+.
T Consensus 81 ~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~ 121 (126)
T 2yuy_A 81 TGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVMPKDS 121 (126)
T ss_dssp SSCCCCEETTEECSSCCHHHHHHHHHTCTTEEEEECCCCCC
T ss_pred CCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCC
Confidence 99999999999999999999999999888889999887654
No 11
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=3.8e-15 Score=99.49 Aligned_cols=88 Identities=24% Similarity=0.401 Sum_probs=75.1
Q ss_pred CCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEE
Q psy16403 20 QQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRV 98 (177)
Q Consensus 20 ~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I 98 (177)
.+..+|+|+|.|.. .+|||++.. +. ....+++|..|.++|||+++| |+.||+|
T Consensus 2 ~~~~~r~v~l~k~~--~glG~~l~~-------------~~-----------~~~~~~~V~~V~~~spA~~aGgl~~GD~I 55 (93)
T 2dkr_A 2 SSGSSGVVELPKTD--EGLGFNIMG-------------GK-----------EQNSPIYISRVIPGGVADRHGGLKRGDQL 55 (93)
T ss_dssp CSSCSCEEEEECCT--TCCCEEEEC-------------SS-----------SSSCCCEEEEECTTSHHHHHCCCCTTCBE
T ss_pred CCCCCEEEEEEeCC--CCccEEEec-------------cc-----------CCCCCEEEEEECCCCHHHHcCCCCCCCEE
Confidence 35678999999988 999999985 11 112468999999999999996 9999999
Q ss_pred EEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy16403 99 VAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 133 (177)
Q Consensus 99 ~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~ 133 (177)
++|||+++.++++.++..+++..+..+.|++.|+.
T Consensus 56 ~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~~ 90 (93)
T 2dkr_A 56 LSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRSGP 90 (93)
T ss_dssp EEETTEECTTSCHHHHHHHHHHCCSEEEEEECCCC
T ss_pred EEECCEECCCCCHHHHHHHHHhCCCcEEEEEEeCC
Confidence 99999999988899999999887788888887654
No 12
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}
Probab=99.63 E-value=3.2e-15 Score=102.06 Aligned_cols=93 Identities=24% Similarity=0.333 Sum_probs=74.8
Q ss_pred CCCCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHc-CCCCCC
Q psy16403 18 SSQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAA-GLVPGD 96 (177)
Q Consensus 18 ~~~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~a-Gl~~GD 96 (177)
...|..+++++|.|.. ..+|||++.+. ... ..+++|..|.++|+|+++ ||+.||
T Consensus 4 ~~~~~~~~~v~l~~~~-~~~lG~~l~~g-------------~~~-----------~~~~~V~~V~~~s~A~~a~gL~~GD 58 (103)
T 2dc2_A 4 SQGVGPIRKVLLLKED-HEGLGISITGG-------------KEH-----------GVPILISEIHPGQPADRCGGLHVGD 58 (103)
T ss_dssp -----CEEEEEEECCS-SSCCCEEEEEE-------------GGG-----------TEEEEEEEECTTSHHHHHTCCCSSE
T ss_pred CCCCCCcEEEEEEeCC-CCccCEEEEec-------------cCC-----------CCCEEEEEECCCCHHHHhCCCCCCC
Confidence 3467788999999876 68999999862 111 125899999999999995 999999
Q ss_pred EEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Q psy16403 97 RVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135 (177)
Q Consensus 97 ~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~ 135 (177)
+|++|||.++.++++.++..+++..++.+.|++.+....
T Consensus 59 ~Il~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~ 97 (103)
T 2dc2_A 59 AILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVYVALE 97 (103)
T ss_dssp EEEEETTEESTTSCHHHHHHHHHHCCSEEEEEEEECC--
T ss_pred EEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEecCCc
Confidence 999999999998899999999999888999999886654
No 13
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=99.62 E-value=2.1e-15 Score=105.86 Aligned_cols=95 Identities=21% Similarity=0.347 Sum_probs=72.4
Q ss_pred CCCCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHc-CCCCCC
Q psy16403 18 SSQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAA-GLVPGD 96 (177)
Q Consensus 18 ~~~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~a-Gl~~GD 96 (177)
.+.+..+|+|+|.|+. ..+|||+|.+.. ... ....+++|..|.++|||+++ ||+.||
T Consensus 19 ~s~~~~~~~v~l~k~~-~~~lGf~i~gg~-------------~~~--------~~~~~~~V~~V~~~spA~~aggL~~GD 76 (120)
T 2iwo_A 19 YFQSMGLRTVEMKKGP-TDSLGISIAGGV-------------GSP--------LGDVPIFIAMMHPTGVAAQTQKLRVGD 76 (120)
T ss_dssp ------CEEEEEEC-----CCCEEEEEEE-------------EET--------TEEEEEEEEEECTTSHHHHHTCCCTTC
T ss_pred CCCCCCcEEEEEEcCC-CCCCCEEEeccc-------------CCC--------CCCCCEEEEEECCCCHHHHhCCCCCCC
Confidence 4566788999999987 469999998721 100 01136899999999999999 899999
Q ss_pred EEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 97 RVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 97 ~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
+|++|||.++.++++.+++.+++..++.+.|+++|.+.
T Consensus 77 ~Il~VnG~~v~~~~~~~~~~~l~~~~~~v~l~v~r~g~ 114 (120)
T 2iwo_A 77 RIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAGGD 114 (120)
T ss_dssp EEEEETTEECTTCBHHHHHHHHHHCCSEEEEEEECCTT
T ss_pred EEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCc
Confidence 99999999999999999999999999899999988654
No 14
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.62 E-value=1.5e-14 Score=98.81 Aligned_cols=91 Identities=29% Similarity=0.393 Sum_probs=76.0
Q ss_pred CCCCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCE
Q psy16403 18 SSQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDR 97 (177)
Q Consensus 18 ~~~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~ 97 (177)
...+..+|+|+|.|.. ..+|||.+... .. ...+++|..|.++|||+++||+.||+
T Consensus 10 ~~~~~~~~~v~l~k~~-~~~lG~~~~~~-------------~~-----------~~~g~~V~~V~~~spA~~aGL~~GD~ 64 (104)
T 1wi2_A 10 ELTQFLPRIVTLKKPP-GAQLGFNIRGG-------------KA-----------SQLGIFISKVIPDSDAHRAGLQEGDQ 64 (104)
T ss_dssp CCCSSCCEEEEECCCT-TCCCSEEEECC-------------SS-----------SCCCCEEEEECTTSHHHHHTCCTTCE
T ss_pred CcCCCCCEEEEEEeCC-CCCccEEEEcc-------------cC-----------CCCCEEEEEeCCCChHHHcCCCCCCE
Confidence 3455678999999987 67999999862 11 12468999999999999999999999
Q ss_pred EEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 98 VVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 98 I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
|++|||+++.++++.++..+++. +..+.|++.+...
T Consensus 65 I~~ing~~v~~~~~~~~~~~l~~-~~~v~l~v~r~~~ 100 (104)
T 1wi2_A 65 VLAVNDVDFQDIEHSKAVEILKT-AREISMRVRFFSG 100 (104)
T ss_dssp EEEETTEECSSCCHHHHHHHHHH-SSSEEEEEECCCC
T ss_pred EEEECCEECCCCCHHHHHHHHhC-CCEEEEEEEECCC
Confidence 99999999998889999999987 7778898877543
No 15
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=99.62 E-value=6e-15 Score=98.33 Aligned_cols=84 Identities=26% Similarity=0.413 Sum_probs=72.6
Q ss_pred CCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEEEE
Q psy16403 22 LGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAV 101 (177)
Q Consensus 22 ~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~I 101 (177)
..+|+|+|.|+. .+|||.+... .+++|..|.++|||+++||+.||+|++|
T Consensus 2 ~~~r~v~l~~~~--~g~G~~l~~~----------------------------~~~~V~~V~~~spA~~aGl~~GD~I~~v 51 (91)
T 2f5y_A 2 MRYRQITIPRGK--DGFGFTICCD----------------------------SPVRVQAVDSGGPAERAGLQQLDTVLQL 51 (91)
T ss_dssp CEEEEEEEECBT--TBTSEEEECS----------------------------SSCEEEEECTTSHHHHHTCCTTCEEEEE
T ss_pred CceEEEEEEeCC--CCccEEEecC----------------------------CCEEEEEECCCCHHHHcCCCCCCEEEEE
Confidence 357899999988 8899998751 2579999999999999999999999999
Q ss_pred CCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Q psy16403 102 NNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135 (177)
Q Consensus 102 ng~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~ 135 (177)
||.++.++++.++..+++..+..+.+++.|....
T Consensus 52 ng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~~ 85 (91)
T 2f5y_A 52 NERPVEHWKCVELAHEIRSCPSEIILLVWRMVPQ 85 (91)
T ss_dssp TTEECTTCCHHHHHHHHHTCSSEEEEEEEECC--
T ss_pred CCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCCC
Confidence 9999998889999999988778889999886543
No 16
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=99.61 E-value=1.1e-14 Score=96.77 Aligned_cols=86 Identities=21% Similarity=0.298 Sum_probs=73.3
Q ss_pred CCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHc-CCCCCCEEEE
Q psy16403 22 LGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAA-GLVPGDRVVA 100 (177)
Q Consensus 22 ~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~a-Gl~~GD~I~~ 100 (177)
..+|+++|.|.. ..+|||++.+. .. ...+++|..|.++|||+++ ||++||+|++
T Consensus 3 ~~~~~v~l~k~~-~~~lG~~i~~~-------------~~-----------~~~g~~V~~V~~~spA~~aggl~~GD~I~~ 57 (90)
T 1qav_A 3 LQRRRVTVRKAD-AGGLGISIKGG-------------RE-----------NKMPILISKIFKGLAADQTEALFVGDAILS 57 (90)
T ss_dssp SSCEEEEEECCT-TTCCCEEEEEE-------------GG-----------GTEEEEEEEECTTSHHHHTTCCCTTEEEEE
T ss_pred CccEEEEEEeCC-CCCcCEEEEcc-------------cC-----------CCCCEEEEEECCCCHHHhcCCCCCCCEEEE
Confidence 568999999965 58999999862 11 1136899999999999999 8999999999
Q ss_pred ECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy16403 101 VNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK 132 (177)
Q Consensus 101 Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~ 132 (177)
|||+++.++++.++...++..+..+.|++.|.
T Consensus 58 ing~~v~~~~~~~~~~~~~~~~~~v~l~v~r~ 89 (90)
T 1qav_A 58 VNGEDLSSATHDEAVQALKKTGKEVVLEVKYM 89 (90)
T ss_dssp ETTEECTTCCHHHHHHHHHTCCSEEEEEEEEC
T ss_pred ECCEECCCCCHHHHHHHHHhCCCeEEEEEEEe
Confidence 99999999999999999998888888888763
No 17
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=3.2e-15 Score=102.34 Aligned_cols=90 Identities=26% Similarity=0.478 Sum_probs=77.2
Q ss_pred CCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEE
Q psy16403 20 QQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVV 99 (177)
Q Consensus 20 ~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~ 99 (177)
.+.+||+|+|.|+. .+|||.+... . ...+++|..|.++|||+++||+.||+|+
T Consensus 5 ~~~~~r~v~l~k~~--~~~G~~l~~~-------------~------------~~~g~~V~~V~~~spA~~aGl~~GD~I~ 57 (106)
T 2eei_A 5 SSGQPRLCYLVKEG--GSYGFSLKTV-------------Q------------GKKGVYMTDITPQGVAMRAGVLADDHLI 57 (106)
T ss_dssp CCSSSEEEEEECCS--SSCSCCEECC-------------S------------SCCSCEECCCCTTSHHHHHTCCSSEEEE
T ss_pred CCCCCEEEEEEECC--CCCCEEEEec-------------c------------CCCCEEEEEECCCCHHHHcCCCCCCEEE
Confidence 46789999999976 8999998751 1 1246899999999999999999999999
Q ss_pred EECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCcce
Q psy16403 100 AVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 136 (177)
Q Consensus 100 ~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~~ 136 (177)
+|||+++.+.++.++...++..++.+.+++.+.+...
T Consensus 58 ~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~~~~~ 94 (106)
T 2eei_A 58 EVNGENVEDASHEEVVEKVKKSGSRVMFLLVDKETDK 94 (106)
T ss_dssp EETTEECTTCCHHHHHHHHHHHCSEEEEEECCTTTSC
T ss_pred EECCEECCCCCHHHHHHHHHhCCCeEEEEEEcCchhh
Confidence 9999999988999999999877888999998876543
No 18
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=99.61 E-value=6.6e-15 Score=102.83 Aligned_cols=94 Identities=22% Similarity=0.397 Sum_probs=77.2
Q ss_pred CCCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCE
Q psy16403 19 SQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDR 97 (177)
Q Consensus 19 ~~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~ 97 (177)
..++.+|+|+|.|+. .+|||++.+.. ... ....+++|..|.++|||+++| |++||+
T Consensus 21 ~~~~~~~~v~L~k~~--~glGf~l~~g~-------------~~~--------~~~~gv~V~~V~~~spA~~aG~L~~GD~ 77 (117)
T 2fne_A 21 QSMPQCKSITLERGP--DGLGFSIVGGY-------------GSP--------HGDLPIYVKTVFAKGAASEDGRLKRGDQ 77 (117)
T ss_dssp --CCEEEEEEECCBT--TBTSEEEEEEE-------------EET--------TEEEEEEEEEECTTSHHHHHCCCCTTCE
T ss_pred cCCCccEEEEEEeCC--CcccEEEeccc-------------CCC--------CCCCCEEEEEECCCChHHHcCCCCCCCE
Confidence 346678999999998 89999998621 100 001368999999999999999 999999
Q ss_pred EEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Q psy16403 98 VVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135 (177)
Q Consensus 98 I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~ 135 (177)
|++|||.++.++++.++...++..++.+.|++.|.+..
T Consensus 78 Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~g~~ 115 (117)
T 2fne_A 78 IIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDET 115 (117)
T ss_dssp EEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEECSCE
T ss_pred EEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Confidence 99999999999999999999998888899999886543
No 19
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Probab=99.60 E-value=1.7e-14 Score=98.15 Aligned_cols=88 Identities=22% Similarity=0.418 Sum_probs=76.3
Q ss_pred CCCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCE
Q psy16403 19 SQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDR 97 (177)
Q Consensus 19 ~~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~ 97 (177)
..+..+|+|+|.|+. .+|||.+... .. ..+++|..|.++|||+++| |+.||+
T Consensus 7 ~~~~~~~~v~l~k~~--~glG~~~~~~-------------~~------------~~gv~V~~V~~~spA~~aG~l~~GD~ 59 (104)
T 3i4w_A 7 DIPREPRRIVIHRGS--TGLGFNIVGG-------------EX------------GEGIFISFILAGGPADLSGELRKGDQ 59 (104)
T ss_dssp CCCSSCEEEEEECBT--TBTSEEEEEC-------------C-------------CCCEEEEEECTTSHHHHHCCCCTTEE
T ss_pred CCCCccEEEEEEeCC--CccCEEEECC-------------CC------------CCCEEEEEECCCChHHhcCCCCCCCE
Confidence 356788999999988 8999999862 11 1368999999999999999 999999
Q ss_pred EEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy16403 98 VVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 133 (177)
Q Consensus 98 I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~ 133 (177)
|++|||.++.+.++.++...++..++.+.|++.++.
T Consensus 60 I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~~ 95 (104)
T 3i4w_A 60 ILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP 95 (104)
T ss_dssp EEEETTEECTTCCHHHHHHHHHTSCSEEEEEEEECH
T ss_pred EEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECc
Confidence 999999999988999999999888888999998754
No 20
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=99.60 E-value=6.4e-15 Score=103.11 Aligned_cols=94 Identities=16% Similarity=0.258 Sum_probs=78.3
Q ss_pred CCCCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCC
Q psy16403 18 SSQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGD 96 (177)
Q Consensus 18 ~~~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD 96 (177)
...+..+|+|.|.|+. ..+|||++.+. ... .....+++|..|.++|+|+++| |+.||
T Consensus 19 ~~~~~~~~~v~l~k~~-~~~lGf~i~gg-------------~~~--------~~~~~gv~V~~V~~gspA~~aG~L~~GD 76 (118)
T 3b76_A 19 YFQSMHEKVVNIQKDP-GESLGMTVAGG-------------ASH--------REWDLPIYVISVEPGGVISRDGRIKTGD 76 (118)
T ss_dssp CCEEEEEEEEEEECCT-TCCCCEEEEEC-------------SCS--------TTCCCCEEEEEECTTSHHHHHCSSCTTC
T ss_pred ccCCCCcEEEEEEeCC-CCccCEEEecC-------------CCC--------CCCCCCEEEEEECCCCHHHHCCCCCCCC
Confidence 3455678999999885 58999999862 110 1123578999999999999999 99999
Q ss_pred EEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy16403 97 RVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 133 (177)
Q Consensus 97 ~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~ 133 (177)
+|++|||.++.++++.+++.+++..++.+.|++.|..
T Consensus 77 ~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~v~R~~ 113 (118)
T 3b76_A 77 ILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALEVK 113 (118)
T ss_dssp EEEEETTEEGGGSCHHHHHHHHHSCCSEEEEEEEEEE
T ss_pred EEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECC
Confidence 9999999999999999999999998888999998743
No 21
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=99.60 E-value=7.5e-15 Score=97.51 Aligned_cols=84 Identities=30% Similarity=0.506 Sum_probs=71.4
Q ss_pred CceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEEEE
Q psy16403 23 GPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAV 101 (177)
Q Consensus 23 ~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~I 101 (177)
.+++|+|.|.. .+|||++.+. . ....+++|..|.++|||+++| |++||+|++|
T Consensus 2 ~~~~v~l~~~~--~g~G~~~~~g-------------~-----------~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~i 55 (90)
T 2q9v_A 2 MEQDIFLWRKE--TGFGFRILGG-------------N-----------EPGEPIYIGHIVPLGAADTDGRLRSGDELISV 55 (90)
T ss_dssp EEEEEEEECBT--TBCCEEEEEC-------------S-----------STTSCEEEEEECTTSHHHHHCCCCTTCEEEEE
T ss_pred CcEEEEEEECC--CccCEEEEcc-------------c-----------cCCCCEEEEEECCCChHHHCCCCCCCCEEEEE
Confidence 46889999998 8999999861 1 112358999999999999999 9999999999
Q ss_pred CCEEcCCCCHHHHHHHHHcCC--CeEEEEEEeC
Q psy16403 102 NNQTIADLPYAEVVQLIQNSP--AYLHLLVVPK 132 (177)
Q Consensus 102 ng~~v~~~~~~~~~~~l~~~~--~~v~l~v~~~ 132 (177)
||.++.+.++.++...++..+ ..+.|++.|.
T Consensus 56 ng~~v~~~~~~~~~~~l~~~~~~~~v~l~v~R~ 88 (90)
T 2q9v_A 56 DGTPVIGKSHQLVVQLMQQAAKQGHVNLTVRQT 88 (90)
T ss_dssp TTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEC
T ss_pred CCEECCCCCHHHHHHHHHhCCCCCeEEEEEEec
Confidence 999998889999999998764 3789988875
No 22
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.60 E-value=2e-14 Score=98.80 Aligned_cols=91 Identities=25% Similarity=0.486 Sum_probs=74.2
Q ss_pred CCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEE
Q psy16403 21 QLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVV 99 (177)
Q Consensus 21 ~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~ 99 (177)
...+++|.|.|.+ .+|||++.+.. .. ......+++|..|.+++||+++| |+.||+|+
T Consensus 13 ~~~~~~v~l~k~~--~glG~~i~~~~-------------~~-------~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il 70 (108)
T 2d92_A 13 SPEVKIVELVKDC--KGLGFSILDYQ-------------DP-------LDPTRSVIVIRSLVADGVAERSGGLLPGDRLV 70 (108)
T ss_dssp CSSCEEEEEEECS--SCCSEEEEEEE-------------CS-------SCTTCEEEEEEEECTTCHHHHHTCCCTTCEEE
T ss_pred CCceEEEEEEECC--CccCEEEeccc-------------cc-------CCCCCCCEEEEEECCCCHHHHCCCCCCCCEEE
Confidence 3467999999998 89999998621 10 00112468999999999999999 99999999
Q ss_pred EECCEEcCCCCHHHHHHHHHcC-CCeEEEEEEeCC
Q psy16403 100 AVNNQTIADLPYAEVVQLIQNS-PAYLHLLVVPKE 133 (177)
Q Consensus 100 ~Ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~~~~ 133 (177)
+|||+++.++++.+++.+++.. +..+.|++.|..
T Consensus 71 ~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~R~~ 105 (108)
T 2d92_A 71 SVNEYCLDNTSLAEAVEILKAVPPGLVHLGICSGP 105 (108)
T ss_dssp EESSCBCTTCCHHHHHHHHHHSCSEEEEEEEECCC
T ss_pred EECCEECCCCCHHHHHHHHHhCCCCeEEEEEEcCC
Confidence 9999999988999999999985 467888887753
No 23
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=99.59 E-value=2.3e-14 Score=95.81 Aligned_cols=86 Identities=19% Similarity=0.342 Sum_probs=73.0
Q ss_pred CCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEEE
Q psy16403 22 LGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVA 100 (177)
Q Consensus 22 ~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~ 100 (177)
...|.+.|.|.+ .+|||++.. + ....+++|..|.++|||+++| |+.||+|++
T Consensus 3 ~~~r~v~l~k~~--~~lG~~i~~-------------~------------~~~~~~~V~~v~~gspA~~aG~L~~GD~I~~ 55 (93)
T 3o46_A 3 DSVKIIRLVKNR--EPLGATIKK-------------D------------EQTGAIIVARIMRGGAADRSGLIHVGDELRE 55 (93)
T ss_dssp -CCEEEEEEESS--SCCCEEEEE-------------C------------TTTCCEEEEEECTTSHHHHHTCCCTTCEEEE
T ss_pred ccEEEEEEEeCC--CCccEEEEe-------------c------------CCCCCEEEEEECCCCHHHHcCCCCCCCEEEE
Confidence 356899999988 799999876 1 112468999999999999999 999999999
Q ss_pred ECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 101 VNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 101 Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
|||.++.+.+++++..+++..++.+.|++++...
T Consensus 56 ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 89 (93)
T 3o46_A 56 VNGIPVEDKRPEEIIQILAQSQGAITFKIIPGSK 89 (93)
T ss_dssp ETTEESTTSCHHHHHHHHHHCCEEEEEEEECC--
T ss_pred ECCEECCCCCHHHHHHHHHhCCCeEEEEEEeCCC
Confidence 9999998889999999999888889999987544
No 24
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.59 E-value=1.6e-14 Score=100.56 Aligned_cols=101 Identities=24% Similarity=0.287 Sum_probs=80.3
Q ss_pred CCCCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCC
Q psy16403 18 SSQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGD 96 (177)
Q Consensus 18 ~~~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD 96 (177)
...|..+|+|+|.|.. ..+|||+|.+. ... +.... ......+++|..|.++|+|+++| |+.||
T Consensus 10 ~~~~~~~~~v~l~k~~-~~~lG~~i~gg-------------~~~-~~~~~-~~~~~~gv~V~~V~~~spA~~aG~L~~GD 73 (117)
T 2ehr_A 10 FSHWGPPRIVEIFREP-NVSLGISIVGG-------------QTV-IKRLK-NGEELKGIFIKQVLEDSPAGKTNALKTGD 73 (117)
T ss_dssp SSCBCCCEEEEECCCS-SSCCCEEECCC-------------CSC-CCSSC-CCSCCCSEEEEEECSSSTTTSSCSCCTTC
T ss_pred cccCCCCEEEEEEeCC-CCccCEEEeCC-------------ccc-ccccc-cCCCcCCEEEEEeCCCChHHHcCCCCCCC
Confidence 4678899999999985 58999999762 111 00000 01123579999999999999999 99999
Q ss_pred EEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 97 RVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 97 ~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
+|++|||+++.++++.+++.+++..+..+.|++.|...
T Consensus 74 ~Il~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~r~~~ 111 (117)
T 2ehr_A 74 KILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQSLSS 111 (117)
T ss_dssp EEEEESSCBCTTCCHHHHHHHHHTSCSSEEEEECCBSC
T ss_pred EEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCC
Confidence 99999999999889999999999888889998876543
No 25
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=99.59 E-value=3e-15 Score=98.07 Aligned_cols=82 Identities=29% Similarity=0.452 Sum_probs=71.2
Q ss_pred CCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEEEE
Q psy16403 22 LGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAV 101 (177)
Q Consensus 22 ~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~I 101 (177)
+++|+|+|.|+. .+|||.+... .+++|..|.++|||+++||+.||+|++|
T Consensus 1 ~~~r~v~l~~~~--~g~G~~~~~~----------------------------~~~~V~~V~~~spA~~aGl~~GD~I~~i 50 (83)
T 2kv8_A 1 PRVRSVEVARGR--AGYGFTLSGQ----------------------------APCVLSCVMRGSPADFVGLRAGDQILAV 50 (83)
T ss_dssp CCEEEEEECCCS--SCCSCBCCCS----------------------------SSCBCCBCCTTSTTTTTTCCTTCEEEEE
T ss_pred CCcEEEEEEeCC--CcccEEEEcC----------------------------CCeEEEEeCCCChHHHcCCCCCCEEEEE
Confidence 468999999998 8899987641 2578999999999999999999999999
Q ss_pred CCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy16403 102 NNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 133 (177)
Q Consensus 102 ng~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~ 133 (177)
||.++.+.++.++..+++..++.+.|++.|..
T Consensus 51 ng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~ 82 (83)
T 2kv8_A 51 NEINVKKASHEDVVKLIGKCSGVLHMVIAEGV 82 (83)
T ss_dssp TTEECSSCCHHHHHHHHTTCSSCEEEEEECCC
T ss_pred CCEECCCCCHHHHHHHHHhCCCeEEEEEEcCC
Confidence 99999988889999999877777888888753
No 26
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=99.58 E-value=3.6e-14 Score=95.14 Aligned_cols=87 Identities=22% Similarity=0.233 Sum_probs=73.8
Q ss_pred ceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEEEEC
Q psy16403 24 PRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVN 102 (177)
Q Consensus 24 ~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~In 102 (177)
..+|.|.|.....+|||.+... . ...+++|..|.++|||+++| |++||+|++||
T Consensus 4 ~~~v~l~k~~~~~~lG~~~~~~-------------~------------~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vn 58 (95)
T 2vwr_A 4 ILQVALHKRDSGEQLGIKLVRR-------------T------------DEPGVFILDLLEGGLAAQDGRLSSNDRVLAIN 58 (95)
T ss_dssp EEEEEEECSSTTCCCCEEEEEC-------------S------------SSCSEEEEEECTTSHHHHHCCCCTTCEEEEET
T ss_pred EEEEEEEECCCCCcccEEEEec-------------c------------CCCCEEEEEeCCCChHHHCCCCCCCCEEEEEC
Confidence 4678999875467899998751 1 12468999999999999999 99999999999
Q ss_pred CEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Q psy16403 103 NQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135 (177)
Q Consensus 103 g~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~ 135 (177)
|.++.+.++.++...++..+..+.|++.|.+..
T Consensus 59 g~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~ 91 (95)
T 2vwr_A 59 GHDLKYGTPELAAQIIQASGERVNLTIARPGKP 91 (95)
T ss_dssp TEECTTCCHHHHHHHHHHCCSEEEEEEEEESCS
T ss_pred CEECCCCCHHHHHHHHHcCCCEEEEEEEcCCcC
Confidence 999998899999999988888999999886544
No 27
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=99.58 E-value=2.8e-14 Score=94.14 Aligned_cols=84 Identities=25% Similarity=0.387 Sum_probs=71.2
Q ss_pred CceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhH-cCCCCCCEEEEE
Q psy16403 23 GPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAA-AGLVPGDRVVAV 101 (177)
Q Consensus 23 ~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~-aGl~~GD~I~~I 101 (177)
.+|+++|.|.. ..+|||++.+. .. ...+++|..|.++|||++ +||+.||+|++|
T Consensus 2 ~~~~v~l~~~~-~~~lG~~i~~~-------------~~-----------~~~~~~V~~V~~gspA~~~agl~~GD~I~~v 56 (87)
T 4e34_A 2 PIRKVLLLKED-HEGLGISITGG-------------KE-----------HGVPILISEIHPGQPADRCGGLHVGDAILAV 56 (87)
T ss_dssp CCEEEEEECCT-TBCCCEEEEEE-------------GG-----------GTEEEEEEEECTTSHHHHHSCCCTTEEEEEE
T ss_pred CEEEEEEEECC-CCcccEEEEcc-------------CC-----------CCCCEEEEEECCCCHHHhcCCCCCCCEEEEE
Confidence 47899999987 57999999862 11 113589999999999999 699999999999
Q ss_pred CCEEcCCCCHHHHHHHHHcCCCeEEEEEEe
Q psy16403 102 NNQTIADLPYAEVVQLIQNSPAYLHLLVVP 131 (177)
Q Consensus 102 ng~~v~~~~~~~~~~~l~~~~~~v~l~v~~ 131 (177)
||.++.+.++.++...++..++.+.|++..
T Consensus 57 ng~~v~~~~~~~~~~~~~~~~~~v~l~v~~ 86 (87)
T 4e34_A 57 NGVNLRDTKHKEAVTILSQQRGEIEFEVVY 86 (87)
T ss_dssp TTEECTTCCHHHHHHHHHHCCSEEEEEEEE
T ss_pred CCEECCCCCHHHHHHHHHcCCCeEEEEEEE
Confidence 999999889999999999888888887753
No 28
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=99.58 E-value=3.2e-14 Score=101.35 Aligned_cols=101 Identities=23% Similarity=0.297 Sum_probs=78.1
Q ss_pred CCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCccccee-eeeccCCCCceEEEeeCCCCHHhHcCCCCCCEE
Q psy16403 20 QQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLR-SRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRV 98 (177)
Q Consensus 20 ~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~-~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I 98 (177)
....+|+++|.|.. ..+|||+|.+. ....+.. .........+++|..|.++|+|+++||+.||+|
T Consensus 24 ~~~~~r~v~l~r~~-~~g~Gf~i~g~-------------~~~~~~~~~~~~~~~~~gv~V~~V~~gspA~~aGL~~GD~I 89 (132)
T 3l4f_D 24 YIIKEKTVLLQKKD-SEGFGFVLRGA-------------KAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFL 89 (132)
T ss_dssp CCCCCCEEEEECCT-TSCCCEEEEEE-------------CCSSCCSCCCCCTTSCCSEEEEEECTTSGGGGGTCCTTCEE
T ss_pred cCCCCEEEEEEECC-CCcEeEEEecc-------------CCCCccccccccccCCCCEEEEEECCCCHHHHcCCCCCCEE
Confidence 45678999999965 58999999873 1111000 000011123689999999999999999999999
Q ss_pred EEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 99 VAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 99 ~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
++|||.++.++++.+++.+++..+..+.|++++...
T Consensus 90 l~Vng~~v~~~~~~~~~~~l~~~g~~v~l~v~~~~~ 125 (132)
T 3l4f_D 90 IEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR 125 (132)
T ss_dssp EEESSSBCTTSCHHHHHHHHHHTTTEEEEEEECCCC
T ss_pred EEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCC
Confidence 999999999999999999999888999999987543
No 29
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=99.58 E-value=2.7e-14 Score=97.66 Aligned_cols=86 Identities=34% Similarity=0.512 Sum_probs=74.0
Q ss_pred CceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEEEEC
Q psy16403 23 GPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVN 102 (177)
Q Consensus 23 ~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~In 102 (177)
.||++.|.|.+ ...|||.+... . ...+++|..|.++|||+++||+.||+|++||
T Consensus 1 g~r~v~l~~~~-~~~~G~~l~~~-------------~------------~~~g~~V~~V~~~spA~~aGl~~GD~I~~in 54 (106)
T 3ngh_A 1 GPRESKLSKQE-GQNYGFFLRIE-------------K------------DTDGHLIRVIEEGSPAEKAGLLDGDRVLRIN 54 (106)
T ss_dssp CCEEEEEECCT-TCCCCCEEECC-------------T------------TCCSCEEECCCTTSHHHHTTCCTTCEEEEET
T ss_pred CCEEEEEEeCC-CCeeCEEEEEE-------------e------------CCCCEEEEEeCCCCHHHHcCCCCCCEEEEEC
Confidence 47999999987 67899988761 1 1236799999999999999999999999999
Q ss_pred CEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 103 NQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 103 g~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
|.++.+.++.++...++..+..+.|++.|.+.
T Consensus 55 g~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~ 86 (106)
T 3ngh_A 55 GVFVDKEEHAQVVELVRKSGNSVTLLVLDGDS 86 (106)
T ss_dssp TEECTTSCHHHHHHHHHHTTTEEEEEEECHHH
T ss_pred CEECCCCCHHHHHHHHHhCCCEEEEEEEECCe
Confidence 99999989999999998888899999987544
No 30
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=99.58 E-value=3e-14 Score=95.35 Aligned_cols=84 Identities=32% Similarity=0.545 Sum_probs=73.0
Q ss_pred CCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEE
Q psy16403 20 QQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVV 99 (177)
Q Consensus 20 ~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~ 99 (177)
.+..+|+|+|.|+. .+|||.+... .+++|..|.++|||+++||+.||+|+
T Consensus 5 ~~~~~r~v~l~~~~--~~~G~~l~~~----------------------------~g~~V~~V~~~spA~~aGL~~GD~I~ 54 (93)
T 2dls_A 5 SSGVQRCVIIQKDQ--HGFGFTVSGD----------------------------RIVLVQSVRPGGAAMKAGVKEGDRII 54 (93)
T ss_dssp CCCCEEEEEEECSS--SSCCEEEECS----------------------------SSCEEEEECSSSTTTTTTCCSSCEEE
T ss_pred CCCCCEEEEEEeCC--CceeEEEeCC----------------------------CCEEEEEECCCCHHHHcCCCCCCEEE
Confidence 45678999999988 8999998751 35799999999999999999999999
Q ss_pred EECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 100 AVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 100 ~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
+|||+++.+.++.+++..++ .++.+.|++.|...
T Consensus 55 ~ing~~v~~~~~~~~~~~~~-~g~~v~l~v~R~~~ 88 (93)
T 2dls_A 55 KVNGTMVTNSSHLEVVKLIK-SGAYVALTLLGSSS 88 (93)
T ss_dssp EETTEECSSSCHHHHHHHHT-SSSEEEEEEECCCC
T ss_pred EECCEECCCCCHHHHHHhhc-CCCEEEEEEEECCC
Confidence 99999999888888888876 58889999988654
No 31
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=99.58 E-value=3.3e-14 Score=94.30 Aligned_cols=84 Identities=13% Similarity=0.276 Sum_probs=72.0
Q ss_pred ceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhH-cCCCCCCEEEEEC
Q psy16403 24 PRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAA-AGLVPGDRVVAVN 102 (177)
Q Consensus 24 ~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~-aGl~~GD~I~~In 102 (177)
.|.|.|.|.+ ..++||++.. +.. .+++|..|.++|||++ +||+.||+|++||
T Consensus 2 ~r~V~l~K~~-~~~lG~~i~~-------------~~~-------------~~~~I~~V~~gspA~~~agL~~GD~I~~In 54 (88)
T 1kwa_A 2 SRLVQFQKNT-DEPMGITLKM-------------NEL-------------NHCIVARIMHGGMIHRQGTLHVGDEIREIN 54 (88)
T ss_dssp CEEEEEEECS-SSCCCEEEEC-------------SCG-------------GGEEEEEECTTSHHHHHTCCCTTCEEEEET
T ss_pred eEEEEEEeCC-CCceeEEEEe-------------CCC-------------CCEEEEEECCCCHHHHcCCCCCCCEEEEEC
Confidence 5889999986 5899999985 111 2589999999999999 7899999999999
Q ss_pred CEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 103 NQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 103 g~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
|+++.+++|+++..+++.....+.|++.+.+.
T Consensus 55 g~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~ 86 (88)
T 1kwa_A 55 GISVANQTVEQLQKMLREMRGSITFKIVPSYR 86 (88)
T ss_dssp TEEGGGSCHHHHHHHHHHCCEEEEEEEECCCC
T ss_pred CEECCCCCHHHHHHHHhcCCCcEEEEEECCcC
Confidence 99999999999999999876688888887543
No 32
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=99.58 E-value=2.8e-14 Score=96.76 Aligned_cols=93 Identities=24% Similarity=0.398 Sum_probs=75.9
Q ss_pred CCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEE
Q psy16403 21 QLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVV 99 (177)
Q Consensus 21 ~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~ 99 (177)
++.++.|+|.|++ .+|||++.+ +.+... .....+++|..|.++|+|+++| |+.||+|+
T Consensus 5 ~~~~~~v~l~~~~--~~lG~~l~~-------------g~~~~~------~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~ 63 (101)
T 2jik_A 5 LVTEEEINLTRGP--SGLGFNIVG-------------GTDQQY------VSNDSGIYVSRIKENGAAALDGRLQEGDKIL 63 (101)
T ss_dssp GEEEEEEEEECCT--TCCCEEEEE-------------CTTSCS------BTTBCCEEEEEECTTSHHHHHCCCCTTCEEE
T ss_pred CCccEEEEEEeCC--CCCCEEEec-------------cccCCC------ccCCCCEEEEEECCCCHHHHCCCCCCCCEEE
Confidence 4567999999988 999999987 221100 0012478999999999999999 99999999
Q ss_pred EECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 100 AVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 100 ~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
+|||+++.+.++.++..+++..+..+.|++.|...
T Consensus 64 ~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~ 98 (101)
T 2jik_A 64 SVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLE 98 (101)
T ss_dssp EETTEECSSCCHHHHHHHHHTCCSEEEEEEEEESC
T ss_pred EECCEECCCCCHHHHHHHHHhCCCeEEEEEEeCCC
Confidence 99999999888999999998888889999987543
No 33
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=99.57 E-value=7.3e-14 Score=94.05 Aligned_cols=87 Identities=24% Similarity=0.408 Sum_probs=72.4
Q ss_pred CCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEEE
Q psy16403 22 LGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVA 100 (177)
Q Consensus 22 ~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~ 100 (177)
...++|.|.|.. .+|||++... . ....+++|..|.++|||+++| |+.||+|++
T Consensus 4 ~~~~~v~l~~~~--~~lG~~i~~~-------------~-----------~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~ 57 (97)
T 1n7e_A 4 AIIYTVELKRYG--GPLGITISGT-------------E-----------EPFDPIIISSLTKGGLAERTGAIHIGDRILA 57 (97)
T ss_dssp CCEEEEEEECTT--SCCCEEEECC-------------S-----------STTSCCEEEEECTTSHHHHHTCCCTTCEEEE
T ss_pred ceEEEEEEEeCC--CCcCEEEEcc-------------c-----------CCCCCEEEEEECCCCHHHHCCCCCCCCEEEE
Confidence 345778887776 7899999761 1 112468999999999999999 999999999
Q ss_pred ECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 101 VNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 101 Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
|||+++.+.++.++..+++..+..+.|++.|.+.
T Consensus 58 vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~ 91 (97)
T 1n7e_A 58 INSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTD 91 (97)
T ss_dssp ETTEECTTCCHHHHHHHHHTCCSEEEEEEECCCC
T ss_pred ECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Confidence 9999999888999999998777889999987654
No 34
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Probab=99.57 E-value=4.7e-14 Score=96.40 Aligned_cols=94 Identities=19% Similarity=0.293 Sum_probs=75.2
Q ss_pred CCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEEE
Q psy16403 22 LGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVA 100 (177)
Q Consensus 22 ~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~ 100 (177)
+..++|+|.|++ .+|||++.+. .+... .....+++|..|.++|+|+++| |+.||+|++
T Consensus 2 e~~~~v~l~k~~--~glG~~i~gg-------------~~~~~------~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ 60 (105)
T 2awx_A 2 EKIMEIKLIKGP--KGLGFSIAGG-------------VGNQH------IPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLA 60 (105)
T ss_dssp -CEEEEEEECBT--TBSSEEEEEC-------------BTSCS------BTTBCCEEEEEECTTSHHHHHCCCCTTCEEEE
T ss_pred CeEEEEEEEECC--CCCCEEEeCc-------------cCCCC------CCCCCCEEEEEECCCCHHHHCCCCCCCCEEEE
Confidence 356789999998 8999999862 11100 0112478999999999999999 999999999
Q ss_pred ECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCcce
Q psy16403 101 VNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 136 (177)
Q Consensus 101 Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~~ 136 (177)
|||+++.+.++.++...++..+..+.|++.|.+...
T Consensus 61 vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~~~ 96 (105)
T 2awx_A 61 VNSVSLEEVTHEEAVTALKNTSDFVYLKVAKPTSMY 96 (105)
T ss_dssp ETTEECTTCBHHHHHHHHHSCCSEEEEEEECCCC--
T ss_pred ECCEECCCCCHHHHHHHHHcCCCeEEEEEEcCCCCC
Confidence 999999988999999999988888999998866543
No 35
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=99.57 E-value=6.8e-14 Score=93.50 Aligned_cols=90 Identities=24% Similarity=0.317 Sum_probs=73.3
Q ss_pred CceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEEEE
Q psy16403 23 GPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAV 101 (177)
Q Consensus 23 ~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~I 101 (177)
..++|+|.|++ .+|||++.+. ..... .....+++|..|.++|||+++| |++||+|++|
T Consensus 3 ~~~~v~l~k~~--~g~G~~i~gg-------------~~~~~------~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~v 61 (94)
T 2fe5_A 3 TIMEVNLLKGP--KGLGFSIAGG-------------IGNQH------IPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAV 61 (94)
T ss_dssp CEEEEEEECCT--TCSCEEEEEC-------------BTSCS------BTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEE
T ss_pred EEEEEEEEECC--CCCCEEEEcc-------------cCCCC------CCCCCCEEEEEECCCChHHHcCCCCCCCEEEEE
Confidence 45889999998 8999999862 11000 0112478999999999999999 9999999999
Q ss_pred CCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy16403 102 NNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 133 (177)
Q Consensus 102 ng~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~ 133 (177)
||+++.+.++.++...++..+..+.|++.|.+
T Consensus 62 ng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~g 93 (94)
T 2fe5_A 62 NNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG 93 (94)
T ss_dssp TTEECTTCBHHHHHHHHHTCCSEEEEEEECCC
T ss_pred CCEECCCCCHHHHHHHHHcCCCeEEEEEEcCC
Confidence 99999988899999999887788888887754
No 36
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}
Probab=99.57 E-value=3.2e-14 Score=98.19 Aligned_cols=83 Identities=24% Similarity=0.354 Sum_probs=71.6
Q ss_pred CCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEEEE
Q psy16403 22 LGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAV 101 (177)
Q Consensus 22 ~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~I 101 (177)
..+|+|.|.|++ .+|||.+... .+++|..|.++|||+++||+.||+|++|
T Consensus 22 ~~~r~v~l~k~~--~~~G~~l~~~----------------------------~~v~V~~V~~gspA~~AGL~~GD~Il~V 71 (109)
T 2vsv_A 22 SMPRSIRFTAEE--GDLGFTLRGN----------------------------APVQVHFLDPYCSASVAGAREGDYIVSI 71 (109)
T ss_dssp HSCEEEEECCGG--GCCCEEEESS----------------------------SSCEEEEECTTSHHHHTTCCTTCEEEEE
T ss_pred CCCEEEEEEeCC--CceeEEEeCC----------------------------CCeEEEEECCCCHHHHcCCCCCCEEEEE
Confidence 468999999987 8999998641 2578999999999999999999999999
Q ss_pred CCEEcCCCCHHHHHHHHHcCCCe-EEEEEEeCCc
Q psy16403 102 NNQTIADLPYAEVVQLIQNSPAY-LHLLVVPKEN 134 (177)
Q Consensus 102 ng~~v~~~~~~~~~~~l~~~~~~-v~l~v~~~~~ 134 (177)
||.++.+++++++..+++..++. +.+++++...
T Consensus 72 nG~~v~~~~~~dv~~~i~~~~~~~v~l~V~~~~~ 105 (109)
T 2vsv_A 72 QLVDCKWLTLSEVMKLLKSFGEDEIEMKVVSLLD 105 (109)
T ss_dssp TTEECTTCCHHHHHHHHHTTTTSCEEEEEESCC-
T ss_pred CCEECCCCCHHHHHHHHHhCCCCeEEEEEEECCC
Confidence 99999988899999999877665 8999887543
No 37
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=99.57 E-value=9.8e-14 Score=93.11 Aligned_cols=89 Identities=24% Similarity=0.350 Sum_probs=74.7
Q ss_pred CCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEEE
Q psy16403 22 LGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVA 100 (177)
Q Consensus 22 ~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~ 100 (177)
..++++.|.|.. .+|||++.+. ... .....+++|..|.++|||+++| |+.||+|++
T Consensus 4 g~~~~v~l~k~~--~~lG~~i~~g-------------~~~--------~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ 60 (96)
T 1d5g_A 4 GDIFEVELAKND--NSLGISVTGG-------------VNT--------SVRHGGIYVKAVIPQGAAESDGRIHKGDRVLA 60 (96)
T ss_dssp TCEEEEEEECSS--SSCCEEEECC-------------SSS--------CSSSSCCEEEEECTTSHHHHTTCCCTTCEEEE
T ss_pred CCEEEEEEEeCC--CCCCEEEECC-------------CCC--------CCCcCCEEEEEeCCCChHHHcCCCCCCCEEEE
Confidence 467899999988 9999999862 111 0112478999999999999999 999999999
Q ss_pred ECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy16403 101 VNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 133 (177)
Q Consensus 101 Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~ 133 (177)
|||+++.++++.++..+++..+..+.|++.|..
T Consensus 61 vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~ 93 (96)
T 1d5g_A 61 VNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQ 93 (96)
T ss_dssp ETTEECTTCCHHHHHHHHHSCCSEEEEEEECCS
T ss_pred ECCEECCCCCHHHHHHHHHcCCCeEEEEEEcCC
Confidence 999999999999999999888888899887754
No 38
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.57 E-value=3.4e-14 Score=97.41 Aligned_cols=96 Identities=19% Similarity=0.315 Sum_probs=77.0
Q ss_pred CCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHc-CCCCCCEEE
Q psy16403 21 QLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAA-GLVPGDRVV 99 (177)
Q Consensus 21 ~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~a-Gl~~GD~I~ 99 (177)
...+++|+|.|.. .+|||+|.+. ..+.+.. ......+++|..|.++|||+++ ||+.||+|+
T Consensus 6 ~~~~~~v~l~k~~--~~lG~~i~g~-------------~~~~~~~---~~~~~~gv~V~~V~~~spA~~aggL~~GD~Il 67 (107)
T 1uhp_A 6 SGKSLTLVLHRDS--GSLGFNIIGG-------------RPSVDNH---DGSSSEGIFVSKIVDSGPAAKEGGLQIHDRII 67 (107)
T ss_dssp SSEEEEEEECCSS--SCCSEEEECC-------------CSCCCCT---TSSCSCCCEEEEECSSSHHHHTTCCCSSCEEE
T ss_pred CcEEEEEEEEeCC--CccCEEEEcC-------------CCCcccc---cccCCCCEEEEEeCCCChHHHcCCCCCCCEEE
Confidence 3567899999987 9999999862 2211100 0112357899999999999999 899999999
Q ss_pred EECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 100 AVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 100 ~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
+|||+++.++++.+++.+++..++.+.|++.|...
T Consensus 68 ~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~ 102 (107)
T 1uhp_A 68 EVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTS 102 (107)
T ss_dssp EETTEECTTCCHHHHHHHHHHCCSSEEEEEEECCS
T ss_pred EECCEECCCCCHHHHHHHHHcCCCcEEEEEEeCCC
Confidence 99999999889999999999888889999988643
No 39
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=99.57 E-value=4.6e-14 Score=93.26 Aligned_cols=83 Identities=17% Similarity=0.199 Sum_probs=69.1
Q ss_pred ceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEEEECC
Q psy16403 24 PRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNN 103 (177)
Q Consensus 24 ~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing 103 (177)
+.++++ +++ .+|||++.+. .. ...+++|..|.++|||+++||++||+|++|||
T Consensus 4 ~~~v~l-~~~--~~~G~~l~~g-------------~~-----------~~~~~~V~~V~~~spA~~aGl~~GD~I~~ing 56 (88)
T 2uzc_A 4 NYSVSL-VGP--APWGFRLQGG-------------KD-----------FNMPLTISSLKDGGKAAQANVRIGDVVLSIDG 56 (88)
T ss_dssp EEEEEE-ESS--SCCCEEEEEE-------------GG-----------GTEEEEEEEECTTSHHHHTTCCTTCEEEEETT
T ss_pred EEEEEE-cCC--CcccEEEECc-------------CC-----------CCCCeEEEEECCCChHHHcCCCCCCEEEEECC
Confidence 466777 566 7899999862 11 11358999999999999999999999999999
Q ss_pred EEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy16403 104 QTIADLPYAEVVQLIQNSPAYLHLLVVPKE 133 (177)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~ 133 (177)
+++.+.++.++..+++..+..+.+++.|.+
T Consensus 57 ~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g 86 (88)
T 2uzc_A 57 INAQGMTHLEAQNKIKGCTGSLNMTLQRES 86 (88)
T ss_dssp EECTTCCHHHHHHHHHTCCSEEEEEEECCC
T ss_pred EECCCCCHHHHHHHHHhCCCeEEEEEEeCC
Confidence 999988889999999877888999988754
No 40
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=99.56 E-value=1.1e-13 Score=92.04 Aligned_cols=87 Identities=28% Similarity=0.502 Sum_probs=72.3
Q ss_pred CCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEEE
Q psy16403 21 QLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVA 100 (177)
Q Consensus 21 ~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~ 100 (177)
+...++++|.|.....+|||.+.. +.. ..+++|..|.++|||+++||+.||+|++
T Consensus 4 ~~~~~~v~l~k~~~~~~~G~~~~~-------------~~~------------~~gv~V~~V~~~spA~~aGl~~GD~I~~ 58 (91)
T 1m5z_A 4 PVELHKVTLYKDSGMEDFGFSVAD-------------GLL------------EKGVYVKNIRPAGPGDLGGLKPYDRLLQ 58 (91)
T ss_dssp CCEEEEEEEECCTTCSSSSEEEEE-------------CTT------------SSCEEEEEECTTSHHHHHTCCTTCEEEE
T ss_pred CcceEEEEEEECCCCCCccEEEEe-------------ccC------------CCCEEEEEECCCCHHHHcCCCCCCEEEE
Confidence 345678999987634689999876 111 2468999999999999999999999999
Q ss_pred ECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy16403 101 VNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK 132 (177)
Q Consensus 101 Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~ 132 (177)
|||+++.+.++.++...++..+..+.+++.|+
T Consensus 59 vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~ 90 (91)
T 1m5z_A 59 VNHVRTRDFDCCLVVPLIAESGNKLDLVISRN 90 (91)
T ss_dssp ETTEECTTCCHHHHHHHHHTSTTEEEEEEEEC
T ss_pred ECCEECCCCCHHHHHHHHHcCCCEEEEEEEeC
Confidence 99999998888888888887788888888774
No 41
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.56 E-value=9.5e-15 Score=99.58 Aligned_cols=88 Identities=31% Similarity=0.408 Sum_probs=74.0
Q ss_pred CCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEE
Q psy16403 21 QLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVV 99 (177)
Q Consensus 21 ~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~ 99 (177)
....++++|.|.. .+|||++... . ....+++|..|.++|||+++| |+.||+|+
T Consensus 7 ~~~~~~v~l~~~~--~g~G~~i~~g-------------~-----------~~~~~~~V~~V~~~spA~~aG~L~~GD~Il 60 (103)
T 1uep_A 7 GYKELDVHLRRME--SGFGFRILGG-------------D-----------EPGQPILIGAVIAMGSADRDGRLHPGDELV 60 (103)
T ss_dssp SEEEECCEEESSS--SSCCEEECCC-------------C-----------STTSCCBEEEECTTSTTGGGTCCCTTCEEE
T ss_pred CceEEEEEEEeCC--CccCEEEeee-------------c-----------CCCCCeEEEEeCCCChHHhCCCCCCCCEEE
Confidence 3456789999977 8999999761 1 112468999999999999999 99999999
Q ss_pred EECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCc
Q psy16403 100 AVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKEN 134 (177)
Q Consensus 100 ~Ing~~v~~~~~~~~~~~l~~~--~~~v~l~v~~~~~ 134 (177)
+|||+++.++++.++..+++.. +..+.|++.|...
T Consensus 61 ~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~ 97 (103)
T 1uep_A 61 YVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKVL 97 (103)
T ss_dssp EETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred EECCEECCCCCHHHHHHHHHhCCCCCcEEEEEEeCCC
Confidence 9999999988999999999876 6889999988543
No 42
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=99.56 E-value=5.5e-14 Score=94.78 Aligned_cols=89 Identities=30% Similarity=0.447 Sum_probs=72.8
Q ss_pred CCCCCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCC
Q psy16403 17 KSSQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGD 96 (177)
Q Consensus 17 ~~~~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD 96 (177)
++.....+|.+.+.++. .+|||.+... . ...+++|..|.++|||+++||++||
T Consensus 3 Dp~~~~~~~~~~l~~~~--~g~G~~~~~~-------------~------------~~~g~~V~~V~~~spA~~aGl~~GD 55 (98)
T 2jxo_A 3 DPFTMLRPRLCTMKKGP--SGYGFNLHSD-------------K------------SKPGQFIRSVDPDSPAEASGLRAQD 55 (98)
T ss_dssp CSSCSSCCEEEEEECTT--TCCCEEEECC-------------C------------SSSCEEEEEECTTSHHHHHTCCTTC
T ss_pred CCCccCCcEEEEEEeCC--CcccEEEEec-------------C------------CCCCEEEEEECCCCHHHHcCCCCCC
Confidence 34556788999999988 8999998761 1 1236899999999999999999999
Q ss_pred EEEEECCEEcCCCCHHHHHHHHHcCCCe-EEEEEEeC
Q psy16403 97 RVVAVNNQTIADLPYAEVVQLIQNSPAY-LHLLVVPK 132 (177)
Q Consensus 97 ~I~~Ing~~v~~~~~~~~~~~l~~~~~~-v~l~v~~~ 132 (177)
+|++|||+++.++++.++..+++..... +.+++.|.
T Consensus 56 ~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~ 92 (98)
T 2jxo_A 56 RIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRE 92 (98)
T ss_dssp EEEEETTEECTTCCHHHHHHHHHTTTTEEEEEECCHH
T ss_pred EEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEECC
Confidence 9999999999977799999999877554 44666553
No 43
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.56 E-value=4.1e-14 Score=97.56 Aligned_cols=90 Identities=17% Similarity=0.304 Sum_probs=77.6
Q ss_pred CCCCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCC
Q psy16403 18 SSQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGD 96 (177)
Q Consensus 18 ~~~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD 96 (177)
...|..++.|.|.|.. .+|||.+... . ..+++|..|.++|+|+++| |+.||
T Consensus 10 ~~~~~~~~~v~l~~~~--~~lG~~l~~~-------------~-------------~~g~~V~~V~~~spA~~aG~l~~GD 61 (111)
T 2dlu_A 10 TVCWGHVEEVELINDG--SGLGFGIVGG-------------K-------------TSGVVVRTIVPGGLADRDGRLQTGD 61 (111)
T ss_dssp CCSCSEEEEEEEECCS--SCCCEEEECC-------------S-------------SSSBEEEEECTTSSHHHHTCCCSSC
T ss_pred CcCcCceEEEEEEeCC--CccCEEEecc-------------C-------------CCCEEEEEECCCCHHHHcCCCCCCC
Confidence 3467788999999988 8999998751 1 1368999999999999999 99999
Q ss_pred EEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Q psy16403 97 RVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135 (177)
Q Consensus 97 ~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~ 135 (177)
+|++|||+++.++++.++..+++..+..+.|++.|....
T Consensus 62 ~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~~ 100 (111)
T 2dlu_A 62 HILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLVARDPAG 100 (111)
T ss_dssp EEEEESSCCCTTSCHHHHHHHHHHHCSEEEEEEEESCTT
T ss_pred EEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeCCCC
Confidence 999999999998889999999987788899999886554
No 44
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=99.56 E-value=6.3e-14 Score=91.99 Aligned_cols=81 Identities=35% Similarity=0.477 Sum_probs=67.7
Q ss_pred eEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEEEECC
Q psy16403 25 RNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNN 103 (177)
Q Consensus 25 r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~Ing 103 (177)
.+++|.|+. .+|||++... . ....+++|..|.++|||+++| |+.||+|++|||
T Consensus 2 ~~v~l~k~~--~g~G~~i~~~-------------~-----------~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng 55 (85)
T 2i04_A 2 IHTKLRKSS--RGFGFTVVGG-------------D-----------EPDEFLQIKSLVLDGPAALDGKMETGDVIVSVND 55 (85)
T ss_dssp EEEEEECBT--TBSSEEEEEC-------------C-----------STTBCEEEEEECTTSHHHHHCCCCTTCEEEEETT
T ss_pred EEEEEEECC--CCCCEEEEcc-------------c-----------CCCCCEEEEEECCCChHHHcCCCCCCCEEEEECC
Confidence 368888888 8999998761 1 122468999999999999999 999999999999
Q ss_pred EEcCCCCHHHHHHHHHcC--CCeEEEEEEe
Q psy16403 104 QTIADLPYAEVVQLIQNS--PAYLHLLVVP 131 (177)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~--~~~v~l~v~~ 131 (177)
.++.++++.++..+++.. +..+.+++.|
T Consensus 56 ~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R 85 (85)
T 2i04_A 56 TCVLGHTHAQVVKIFQSIPIGASVDLELCR 85 (85)
T ss_dssp EECTTCCHHHHHHHHHTSCTTCEEEEEEEC
T ss_pred EECCCCCHHHHHHHHHhCCCCCeEEEEEEC
Confidence 999988899999999876 5778887754
No 45
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=99.56 E-value=8.7e-14 Score=92.65 Aligned_cols=85 Identities=20% Similarity=0.294 Sum_probs=72.7
Q ss_pred CceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEEEE
Q psy16403 23 GPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAV 101 (177)
Q Consensus 23 ~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~I 101 (177)
..++++|.|.+ ..+|||++... . ...+++|..|.++|||+++| |++||+|++|
T Consensus 4 ~~~~v~l~k~~-~~~lG~~~~~~-------------~------------~~~gv~V~~V~~~spA~~aG~L~~GD~I~~v 57 (92)
T 2qg1_A 4 DTLTIGLQKKP-GKGLGLSIVGK-------------R------------NDTGVFVSDIVKGGIADADGRLMQGDQILMV 57 (92)
T ss_dssp CEEEEEEECCT-TSCCSEEEECC-------------S------------SSCSCEEEEECTTSHHHHHTCCCTTCEEEEE
T ss_pred eEEEEEEEeCC-CCcccEEEEec-------------c------------CCCCEEEEEECCCCHHHHcCCCCCCCEEEEE
Confidence 35789999875 58999999761 1 12468999999999999999 9999999999
Q ss_pred CCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy16403 102 NNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 133 (177)
Q Consensus 102 ng~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~ 133 (177)
||+++.+.++.++...++..++.+.|++.|.+
T Consensus 58 ng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~ 89 (92)
T 2qg1_A 58 NGEDVRNATQEAVAALLKCSLGTVTLEVGRIS 89 (92)
T ss_dssp TTEECTTCCHHHHHHHHHHCCSEEEEEEECCC
T ss_pred CCEECCCCCHHHHHHHHHcCCCeEEEEEEccc
Confidence 99999988899999999888888999998764
No 46
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=99.56 E-value=6.4e-14 Score=94.37 Aligned_cols=93 Identities=24% Similarity=0.349 Sum_probs=73.6
Q ss_pred CCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEEE
Q psy16403 22 LGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVA 100 (177)
Q Consensus 22 ~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~ 100 (177)
..+++++|.|.+ ..+|||++....- ... ......+++|..|.++|||+++| |++||+|++
T Consensus 4 e~~~~v~l~k~~-~~glG~~i~~~~~-------------~~~-----~~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~ 64 (98)
T 1ihj_A 4 ELIHMVTLDKTG-KKSFGICIVRGEV-------------KDS-----PNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILS 64 (98)
T ss_dssp CEEEEEEEECTT-SSSCCEEEEEEEE-------------CCS-----SSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEE
T ss_pred ceEEEEEEEeCC-CCCcCEEEecccc-------------CCc-----cccCCCCEEEEEECCCCHHHHcCCCCCCCEEEE
Confidence 346889999954 4899999976310 000 00112368999999999999999 999999999
Q ss_pred ECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy16403 101 VNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 133 (177)
Q Consensus 101 Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~ 133 (177)
|||+++.+.++.++..+++..+..+.|++.|.+
T Consensus 65 ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~g 97 (98)
T 1ihj_A 65 LNGKDVRNSTEQAVIDLIKEADFKIELEIQTFD 97 (98)
T ss_dssp ETTEECTTCCHHHHHHHHHHSCSEEEEEEEEC-
T ss_pred ECCEECCCCCHHHHHHHHhcCCCeEEEEEEeCC
Confidence 999999988889999999888888999998854
No 47
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=99.56 E-value=2.6e-14 Score=96.58 Aligned_cols=93 Identities=28% Similarity=0.391 Sum_probs=72.7
Q ss_pred eEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEEEECCE
Q psy16403 25 RNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQ 104 (177)
Q Consensus 25 r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~ 104 (177)
.++++.|+. .+|||++.....+. +.. .....+++|..|.++|||+++||+.||+|++|||.
T Consensus 4 ~~v~l~~~~--~~~Gf~l~~~~~~~---------~~~--------~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~ 64 (99)
T 3khf_A 4 PPIVIHSSG--KKYGFSLRAIRVYM---------GDS--------DVYTVHHVVWSVEDGSPAQEAGLRAGDLITHINGE 64 (99)
T ss_dssp CCEEEEC-C--CCCCEEEEEEEEES---------SSS--------SCEEEEEEEEEECTTSHHHHHTCCTTCEEEEETTE
T ss_pred CCEEEEeCC--CCCcEEEEeccccc---------Ccc--------ccccCCeEEEEECCCCHHHHcCCCCCCEEEEECCE
Confidence 357888877 99999998632110 000 00112568999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHcCCCeEEEEEEeCCcce
Q psy16403 105 TIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 136 (177)
Q Consensus 105 ~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~~ 136 (177)
++.++++.++...++..++.+.|++.|.+...
T Consensus 65 ~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~~~ 96 (99)
T 3khf_A 65 SVLGLVHMDVVELLLKSGNKISLRTTALENTE 96 (99)
T ss_dssp ECTTCCHHHHHHHHHHSCSEEEEEEECSCSSC
T ss_pred ECCCCCHHHHHHHHhcCCCEEEEEEEECCCcc
Confidence 99999999999999988899999999866543
No 48
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=99.56 E-value=7e-14 Score=92.24 Aligned_cols=82 Identities=26% Similarity=0.325 Sum_probs=67.2
Q ss_pred EEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEEEECCEEc
Q psy16403 27 LILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTI 106 (177)
Q Consensus 27 v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v 106 (177)
+++.+.. ..+|||++.+. ... ..+++|..|.++|||+++||++||+|++|||.++
T Consensus 4 ~~v~~~~-~~~lG~~l~~~-------------~~~-----------~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v 58 (87)
T 2pa1_A 4 LTVDVAG-PAPWGFRITGG-------------RDF-----------HTPIMVTKVAERGKAKDADLRPGDIIVAINGESA 58 (87)
T ss_dssp EEEEECS-SSCCSEEEEEE-------------GGG-----------TEEEEEEEECSSSHHHHTTCCTTCEEEEETTEES
T ss_pred EEEEECC-CCccCEEEecc-------------cCC-----------CCCEEEEEECCCChHHHcCCCCCCEEEEECCEEC
Confidence 4444443 47999999862 111 1368999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy16403 107 ADLPYAEVVQLIQNSPAYLHLLVVPKE 133 (177)
Q Consensus 107 ~~~~~~~~~~~l~~~~~~v~l~v~~~~ 133 (177)
.++++.++..+++.....+.+++.|.+
T Consensus 59 ~~~~~~~~~~~l~~~~~~v~l~v~R~~ 85 (87)
T 2pa1_A 59 EGMLHAEAQSKIRQSPSPLRLQLDRIT 85 (87)
T ss_dssp TTCCHHHHHHHHHTCCSSEEEEEEECC
T ss_pred CCCCHHHHHHHHHcCCCeEEEEEEecC
Confidence 977799999999987778999998864
No 49
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=99.56 E-value=7.1e-14 Score=98.44 Aligned_cols=90 Identities=22% Similarity=0.313 Sum_probs=76.3
Q ss_pred CCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEE
Q psy16403 20 QQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRV 98 (177)
Q Consensus 20 ~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I 98 (177)
....+|+++|.|.. ..+|||++.+. . ....+++|..|.++|||+++| |+.||+|
T Consensus 16 ~~~~~~~v~l~k~~-~~~lG~~i~gg-------------~-----------~~~~~~~V~~v~~gspA~~aG~L~~GD~I 70 (125)
T 3hpk_A 16 IPTVPGKVTLQKDA-QNLIGISIGGG-------------A-----------QYCPCLYIVQVFDNTPAALDGTVAAGDEI 70 (125)
T ss_dssp CCEEEEEEEEECCT-TSCCCEEEEEC-------------S-----------SCCSSEEEEEECTTSHHHHHCCCCTTCEE
T ss_pred CcCCCeEEEEEeCC-CCCcCEEEecc-------------C-----------CCCCCEEEEEeCCCCHHHHCCCCCCCCEE
Confidence 44568999999977 57899999862 1 112468999999999999999 9999999
Q ss_pred EEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 99 VAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 99 ~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
++|||.++.+++|.++..+++..++.+.+++.+...
T Consensus 71 l~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~ 106 (125)
T 3hpk_A 71 TGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQA 106 (125)
T ss_dssp EEETTEECTTCCHHHHHHHHHHSCSEEEEEEEEECS
T ss_pred EEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCC
Confidence 999999999999999999999888889999887433
No 50
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}
Probab=99.55 E-value=6.1e-14 Score=97.02 Aligned_cols=88 Identities=25% Similarity=0.444 Sum_probs=73.7
Q ss_pred CCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEE
Q psy16403 20 QQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRV 98 (177)
Q Consensus 20 ~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I 98 (177)
.+...+++.|.|+. .+|||++.+. .. ...+++|..|.++|+|+++| |+.||+|
T Consensus 21 ~~~~~~~v~l~~~~--~glG~~l~~~-------------~~-----------~~~gv~V~~V~~~spA~~aG~L~~GD~I 74 (112)
T 2r4h_A 21 QSMDFYTVELERGA--KGFGFSLRGG-------------RE-----------YNMDLYVLRLAEDGPAERSGKMRIGDEI 74 (112)
T ss_dssp --CCEEEEEEECBT--TBTSEEEEEC-------------GG-----------GTCCEEEEEECTTSHHHHTTCCCTTCEE
T ss_pred CCCceEEEEEEcCC--CccCEEEecc-------------cc-----------CCCCEEEEEECCCChHHHcCCCCCCCEE
Confidence 34567899999988 8899999761 11 12468999999999999999 9999999
Q ss_pred EEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy16403 99 VAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 133 (177)
Q Consensus 99 ~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~ 133 (177)
++|||.++.+.++.++...++..+..+.|++.|.+
T Consensus 75 l~Vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~ 109 (112)
T 2r4h_A 75 LEINGETTKNMKHSRAIELIKNGGRRVRLFLKRGE 109 (112)
T ss_dssp EEETTEECTTCCHHHHHHHHHTTTTEEEEEEECCE
T ss_pred EEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCC
Confidence 99999999988899999999888888999988754
No 51
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.55 E-value=9.8e-14 Score=96.74 Aligned_cols=94 Identities=18% Similarity=0.373 Sum_probs=77.8
Q ss_pred CCCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCE
Q psy16403 19 SQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDR 97 (177)
Q Consensus 19 ~~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~ 97 (177)
.....++.|.|.|.. ..+|||.+... .. ....+++|..|.++++|+++| |++||+
T Consensus 11 ~~~~~~~~v~l~k~~-~~~lG~~i~~~-------------~~----------~~~~~~~V~~V~~~spA~~aG~l~~GD~ 66 (117)
T 1v62_A 11 ANASGPLMVEIVKTP-GSALGISLTTT-------------SL----------RNKSVITIDRIKPASVVDRSGALHPGDH 66 (117)
T ss_dssp CCSSSSEEEEEECCT-TCCCCCEEEEE-------------CC----------SSSCEEEEEECCTTSHHHHHTCCCTTCB
T ss_pred cCCCCcEEEEEEcCC-CCcccEEEEcc-------------CC----------CCCCCEEEEEECCCCHHHHcCCCCCCCE
Confidence 345678999999886 57999998762 11 011248999999999999999 999999
Q ss_pred EEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCcce
Q psy16403 98 VVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 136 (177)
Q Consensus 98 I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~~ 136 (177)
|++|||+++.+.+++++..+++..+..+.|++.|.+...
T Consensus 67 Il~Ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~~~ 105 (117)
T 1v62_A 67 ILSIDGTSMEHCSLLEATKLLASISEKVRLEILPVPQSQ 105 (117)
T ss_dssp EEEETTEETTSCCHHHHHHHHHSCSSEEEEEECCBTTBC
T ss_pred EEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEECCCCC
Confidence 999999999888999999999988888999998865543
No 52
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=7.3e-14 Score=97.68 Aligned_cols=94 Identities=22% Similarity=0.346 Sum_probs=76.6
Q ss_pred CCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEE
Q psy16403 20 QQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRV 98 (177)
Q Consensus 20 ~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I 98 (177)
.+..+++|+|.|.. .+|||++... .+... .....+++|..|.++|+|+++| |+.||+|
T Consensus 14 ~~~~~~~v~l~r~~--~~lG~~i~~~-------------~~~~~------~~~~~gv~V~~V~~~spA~~aG~L~~GD~I 72 (120)
T 2eno_A 14 YLVTEEEINLTRGP--SGLGFNIVGG-------------TDQQY------VSNDSGIYVSRIKENGAAALDGRLQEGDKI 72 (120)
T ss_dssp EEEEEEEEEEECCS--SSCSEEEECC-------------TTTCS------SSSCCSEEEEEECSSSHHHHSCCSCTTCEE
T ss_pred CCCceEEEEEEECC--CCCCEEEecc-------------cCCcc------ccCCCCEEEEEECCCChHHHCCCCCCCCEE
Confidence 34577999999998 9999999862 11100 0013478999999999999999 9999999
Q ss_pred EEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 99 VAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 99 ~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
++|||+++.++++.++...++..+..+.|++.|...
T Consensus 73 l~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~ 108 (120)
T 2eno_A 73 LSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQ 108 (120)
T ss_dssp EEETTEECCSCCHHHHHHHHHHHCSEEEEEEEEEEE
T ss_pred EEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Confidence 999999999989999999998778889999987543
No 53
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.55 E-value=1.2e-13 Score=95.74 Aligned_cols=86 Identities=22% Similarity=0.347 Sum_probs=74.3
Q ss_pred CCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCC-CCCCEEEE
Q psy16403 22 LGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGL-VPGDRVVA 100 (177)
Q Consensus 22 ~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl-~~GD~I~~ 100 (177)
...|+|.|.|.. ..+|||.+... ..+++|..|.+++||+++|| +.||+|++
T Consensus 24 ~~~~~v~l~k~~-~~~lG~~i~~~---------------------------~~gv~V~~V~~~spA~~aGll~~GD~I~~ 75 (113)
T 1va8_A 24 ETVKIVRIEKAR-DIPLGATVRNE---------------------------MDSVIISRIVKGGAAEKSGLLHEGDEVLE 75 (113)
T ss_dssp EECEEEEEEECT-TCCCCEEEEEC---------------------------SSSEEEEEECTTSHHHHHTCCCTTCEEEE
T ss_pred CceEEEEEEeCC-CCceeEEEEeC---------------------------CCCEEEEEeCCCCHHHHcCCCCCCCEEEE
Confidence 367889999988 34999998751 13689999999999999998 99999999
Q ss_pred ECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Q psy16403 101 VNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135 (177)
Q Consensus 101 Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~ 135 (177)
|||+++.++++.++..+++..++.+.|++.+.+.+
T Consensus 76 vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~ 110 (113)
T 1va8_A 76 INGIEIRGKDVNEVFDLLSDMHGTLTFVLIPSSGP 110 (113)
T ss_dssp ETTEECTTCCHHHHHHHHHHCCEEEEEEEECCCCC
T ss_pred ECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCcc
Confidence 99999999999999999988888889998876543
No 54
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=99.55 E-value=2.3e-14 Score=101.74 Aligned_cols=91 Identities=18% Similarity=0.346 Sum_probs=73.9
Q ss_pred CCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHc-CCCCCCEE
Q psy16403 20 QQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAA-GLVPGDRV 98 (177)
Q Consensus 20 ~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~a-Gl~~GD~I 98 (177)
.....+.|+|.|+. .+|||+|.+ +.+.. ....+++|..|.++++|+++ ||+.||+|
T Consensus 26 ~~~~~~~v~l~k~~--~glG~~i~g-------------g~~~~--------~~~~~i~I~~V~~gs~A~~aggL~~GD~I 82 (130)
T 1i16_A 26 AEATVCTVTLEKMS--AGLGFSLEG-------------GKGSL--------HGDKPLTINRIFKGAASEQSETVQPGDEI 82 (130)
T ss_dssp SSEEEEEEEEETTS--SSTTEEEEC-------------CCCCS--------SSCCCCEEEEECSSCCCSSSCCCCTTCCE
T ss_pred CCCcEEEEEEEcCC--CccCEEEec-------------CcCCC--------CCCCCEEEEEECCCCHHHHcCCCCCCCEE
Confidence 34466889999987 899999986 22210 01246899999999999999 79999999
Q ss_pred EEECCEEcCCCCHHHHHHHHHcCCC-eEEEEEEeCC
Q psy16403 99 VAVNNQTIADLPYAEVVQLIQNSPA-YLHLLVVPKE 133 (177)
Q Consensus 99 ~~Ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~~~~ 133 (177)
++|||+++.+++|++++.+++..+. .+.|++.|..
T Consensus 83 l~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~~ 118 (130)
T 1i16_A 83 LQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKS 118 (130)
T ss_dssp EECSSCBGGGSCHHHHHHHHHTSCSSEEEEEEEEES
T ss_pred EEECCEECCCCCHHHHHHHHHhCCCceEEEEEEeCC
Confidence 9999999999999999999998755 4888887753
No 55
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.55 E-value=4.6e-14 Score=96.44 Aligned_cols=94 Identities=23% Similarity=0.347 Sum_probs=75.5
Q ss_pred CCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEE
Q psy16403 21 QLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVV 99 (177)
Q Consensus 21 ~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~ 99 (177)
.....+++|.|.. .+|||++.+. ..... ......+++|..|.++|||+++| |+.||+|+
T Consensus 5 ~~~~~~v~l~~~~--~glG~~l~~g-------------~~~~~-----~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~ 64 (105)
T 1wha_A 5 SSGRHVACLARSE--RGLGFSIAGG-------------KGSTP-----YRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVL 64 (105)
T ss_dssp CCEEEEEEECCCT--TCCSCEEECC-------------TTSCC-----SSTTCCSCEEEECCTTSSHHHHSSCCTTCEEE
T ss_pred CCeeEEEEEEeCC--CccCEEEEec-------------cCCCc-----ccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEE
Confidence 4456778898888 8899999862 21100 00112478999999999999999 99999999
Q ss_pred EECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 100 AVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 100 ~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
+|||+++.++++.++..+++..+..+.|++.|...
T Consensus 65 ~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~ 99 (105)
T 1wha_A 65 SINGVDVTEARHDHAVSLLTAASPTIALLLEREAG 99 (105)
T ss_dssp EESSCBCTTCCHHHHHHHHTSCCSCEEEEEEECCC
T ss_pred EECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCC
Confidence 99999999888999999998888889999988653
No 56
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=99.55 E-value=1.2e-13 Score=93.08 Aligned_cols=88 Identities=18% Similarity=0.351 Sum_probs=74.4
Q ss_pred CceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEEEE
Q psy16403 23 GPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAV 101 (177)
Q Consensus 23 ~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~I 101 (177)
.+++|.|.|+. .+|||++... .+ ....+++|..|.++|||+++| |+.||+|++|
T Consensus 4 ~~~~v~l~~~~--~~lG~~l~~~-------------~~----------~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~v 58 (98)
T 2opg_A 4 CETTIEISKGR--TGLGLSIVGG-------------SD----------TLLGAIIIHEVYEEGAACKDGRLWAGDQILEV 58 (98)
T ss_dssp EEEEEEEECBT--TBTCEEEEEC-------------TT----------STTCSEEEEEECTTSHHHHHCCCCTTCEEEEE
T ss_pred CEEEEEEEECC--CcccEEEecC-------------CC----------CCCCCEEEEEECCCChHHhCCCCCCCCEEEEE
Confidence 46889999988 8999999862 11 111468999999999999999 9999999999
Q ss_pred CCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Q psy16403 102 NNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135 (177)
Q Consensus 102 ng~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~ 135 (177)
||.++.+.++.++...++..+..+.+++.|.+..
T Consensus 59 ng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~~ 92 (98)
T 2opg_A 59 NGIDLRKATHDEAINVLRQTPQRVRLTLYRDEAP 92 (98)
T ss_dssp TTEECTTCCHHHHHHHHHTCCSEEEEEEEECSSC
T ss_pred CCEECCCCCHHHHHHHHHhCCCeEEEEEEcCCCC
Confidence 9999998889999999988788899999886653
No 57
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1e-13 Score=94.45 Aligned_cols=91 Identities=26% Similarity=0.330 Sum_probs=75.3
Q ss_pred CCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEE
Q psy16403 20 QQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRV 98 (177)
Q Consensus 20 ~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I 98 (177)
.....++++|.|.. .+|||.+... .+.. ...+++|..|.+++||+++| |+.||+|
T Consensus 8 ~~~~~~~v~l~~~~--~g~G~~l~~~-------------~~~~---------~~~~v~V~~V~~~spA~~aG~l~~GD~I 63 (104)
T 2djt_A 8 QASGHFSVELVRGY--AGFGLTLGGG-------------RDVA---------GDTPLAVRGLLKDGPAQRCGRLEVGDLV 63 (104)
T ss_dssp SCCCCEEEEEECCS--SSCCEEEECC-------------EETT---------EECCCEEEEECTTCHHHHHCSCCTTCBE
T ss_pred CCCceEEEEEEeCC--CCccEEEEec-------------cCCC---------CCCCEEEEEECCCCHHHHcCCCCCCCEE
Confidence 34567899999988 8999999862 1110 01468999999999999999 9999999
Q ss_pred EEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 99 VAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 99 ~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
++|||+++.++++.++..+++..+..+.|++.|.+.
T Consensus 64 ~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g~ 99 (104)
T 2djt_A 64 LHINGESTQGLTHAQAVERIRAGGPQLHLVIRRPLS 99 (104)
T ss_dssp EEETTEECTTCCHHHHHHHHHHTCSEEEEEECCCCC
T ss_pred EEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCC
Confidence 999999999888999999998878889999987554
No 58
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=8.1e-14 Score=93.35 Aligned_cols=86 Identities=28% Similarity=0.337 Sum_probs=71.0
Q ss_pred CCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEEEE
Q psy16403 22 LGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAV 101 (177)
Q Consensus 22 ~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~I 101 (177)
..+++|+| +++ .+|||.+.+ +.. ...+++|..|.++|||+++||++||+|++|
T Consensus 7 ~~~~~v~l-~~~--~~~G~~l~g-------------g~~-----------~~~~v~V~~V~~~spA~~aGl~~GD~I~~i 59 (94)
T 2eeg_A 7 GMPHSVTL-RGP--SPWGFRLVG-------------GRD-----------FSAPLTISRVHAGSKAALAALCPGDLIQAI 59 (94)
T ss_dssp CCCEEEEE-CCS--SCCSCCEEC-------------CTT-----------TTSCCEECCCCSSSHHHHTTCCTTCEEEEE
T ss_pred CceEEEEE-eCC--CccCEEEEC-------------ccC-----------CCCCEEEEEECCCCHHHHcCCCCCCEEEEE
Confidence 45688888 455 689999986 221 124689999999999999999999999999
Q ss_pred CCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 102 NNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 102 ng~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
||+++.++++.++...++..++.+.|++.|.+.
T Consensus 60 ng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g~ 92 (94)
T 2eeg_A 60 NGESTELMTHLEAQNRIKGCHDHLTLSVSSGPS 92 (94)
T ss_dssp TTEETTTCCHHHHHHHHHTCCSCEEEEEECCSS
T ss_pred CCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Confidence 999999888899999888877889999987543
No 59
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=99.55 E-value=5.9e-14 Score=94.87 Aligned_cols=84 Identities=13% Similarity=0.266 Sum_probs=71.3
Q ss_pred CCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEEE
Q psy16403 22 LGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVA 100 (177)
Q Consensus 22 ~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~ 100 (177)
..+|.+.|.|.. ..++||++... . ..+++|..|.++|||+++| |++||+|++
T Consensus 11 ~~~~~v~l~K~~-~~~lG~~l~~~-------------~-------------~~gv~V~~V~~gspA~~aG~L~~GD~Il~ 63 (97)
T 2ejy_A 11 HMVRLIQFEKVT-EEPMGICLKLN-------------E-------------KQSCTVARILHGGMIHRQGSLHVGDEILE 63 (97)
T ss_dssp --CEEEEEEECS-SSCCSEEEEEC-------------T-------------TCCEEEEEECSSSHHHHHTCCCTTCEEEE
T ss_pred CccEEEEEEeCC-CCCeeEEEEeC-------------C-------------CCCEEEEEeCCCCHHHHcCCCCCCCEEEE
Confidence 568999999977 57999998751 1 1368999999999999999 999999999
Q ss_pred ECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy16403 101 VNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK 132 (177)
Q Consensus 101 Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~ 132 (177)
|||.++.+++++++.++++..++.+.|++.+.
T Consensus 64 ING~~v~~~~~~~~~~~l~~~~~~v~L~V~~~ 95 (97)
T 2ejy_A 64 INGTNVTNHSVDQLQKAMKETKGMISLKVIPN 95 (97)
T ss_dssp ETTBCCCSSCSHHHHHHHHHCCEEEEEEEECC
T ss_pred ECCEECCCCCHHHHHHHHHcCCCeEEEEEEEC
Confidence 99999998889999999998777788888764
No 60
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.55 E-value=1.8e-13 Score=96.18 Aligned_cols=87 Identities=31% Similarity=0.413 Sum_probs=73.3
Q ss_pred CCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEEE
Q psy16403 22 LGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVA 100 (177)
Q Consensus 22 ~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~ 100 (177)
...++|+|.|+. .+|||++.+. . ....+++|..|.++|+|+++| |+.||+|++
T Consensus 18 ~~~~~v~l~~~~--~glG~~~~~g-------------~-----------~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ 71 (123)
T 1ueq_A 18 GTFLSTTLKKSN--MGFGFTIIGG-------------D-----------EPDEFLQVKSVIPDGPAAQDGKMETGDVIVY 71 (123)
T ss_dssp SEEEEEEEECCT--TSCSEEEECC-------------S-----------SSSCCCEEEEECTTSHHHHTSCCCTTCEEEE
T ss_pred CcEEEEEEEeCC--CceeEEEecc-------------c-----------CCCCCEEEEEECCCCHHHHCCCCCCCCEEEE
Confidence 345678898887 8999999861 1 122468999999999999999 999999999
Q ss_pred ECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCc
Q psy16403 101 VNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKEN 134 (177)
Q Consensus 101 Ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~~~~~ 134 (177)
|||+++.++++.++..+++. .+..+.|++.|...
T Consensus 72 Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~ 107 (123)
T 1ueq_A 72 INEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYP 107 (123)
T ss_dssp ETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEESCC
T ss_pred ECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCCC
Confidence 99999999899999999988 46789999988653
No 61
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Probab=99.55 E-value=1.2e-13 Score=93.82 Aligned_cols=90 Identities=22% Similarity=0.335 Sum_probs=74.4
Q ss_pred ceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEEEEC
Q psy16403 24 PRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVN 102 (177)
Q Consensus 24 ~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~In 102 (177)
.++|+|.|+. .+|||++.+. .+... .....+++|..|.++|||+++| |+.||+|++||
T Consensus 5 ~~~v~l~k~~--~glG~~i~~g-------------~~~~~------~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vn 63 (102)
T 2i1n_A 5 YEEIVLERGN--SGLGFSIAGG-------------IDNPH------VPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVN 63 (102)
T ss_dssp EEEEEEECBT--TBTSEEEEEC-------------TTSCS------STTCCCEEEEEECTTSHHHHHCCCCTTCEEEEET
T ss_pred EEEEEEEECC--CcCCEEEEcc-------------cCCCC------cCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEEC
Confidence 4789999987 8999999862 11100 0123578999999999999999 99999999999
Q ss_pred CEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 103 NQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 103 g~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
|.++.++++.++...++..+..+.|++.|.+.
T Consensus 64 g~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~ 95 (102)
T 2i1n_A 64 EVDVSEVVHSRAVEALKEAGPVVRLVVRRRQP 95 (102)
T ss_dssp TEECSSCCHHHHHHHHHHSCSEEEEEEEEECC
T ss_pred CEECCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Confidence 99999888999999998888889999988654
No 62
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=99.54 E-value=2.8e-14 Score=98.15 Aligned_cols=91 Identities=19% Similarity=0.338 Sum_probs=74.2
Q ss_pred CCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEE
Q psy16403 21 QLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVV 99 (177)
Q Consensus 21 ~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~ 99 (177)
+..+++|+|.|.+ ..+|||++.+. .. .....+++|..|.++|||+++| |+.||+|+
T Consensus 3 ~~~~~~v~l~k~~-~~~lG~~i~g~-------------~~---------~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il 59 (108)
T 3cbz_A 3 HMNIITVTLNMEK-YNFLGISIVGQ-------------SN---------ERGDGGIYIGSIMKGGAVAADGRIEPGDMLL 59 (108)
T ss_dssp -CCEEEEEECHHH-HCCCCEEEEEE-------------CS---------STTCCEEEEEEECTTSHHHHHCCCCTTCEEE
T ss_pred CceEEEEEEEeCC-CCccCEEEEcC-------------cC---------CCCCCCEEEEEECCCChHHhcCCCCCCCEEE
Confidence 3577899999854 48999999862 11 1123578999999999999999 99999999
Q ss_pred EECCEEcCCCCHHHHHHHHHcC---CCeEEEEEEeCCc
Q psy16403 100 AVNNQTIADLPYAEVVQLIQNS---PAYLHLLVVPKEN 134 (177)
Q Consensus 100 ~Ing~~v~~~~~~~~~~~l~~~---~~~v~l~v~~~~~ 134 (177)
+|||+++.++++++++.+++.. +..+.|++.|...
T Consensus 60 ~Vng~~v~~~~~~~~~~~l~~~~~~~~~v~l~v~R~~~ 97 (108)
T 3cbz_A 60 QVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKSGG 97 (108)
T ss_dssp EETTEETTSCCHHHHHHHHHHHHTSSSCEEEEEECCCC
T ss_pred EECCEECCCCCHHHHHHHHHhcccCCCeEEEEEEeCCC
Confidence 9999999988899999999876 4568999988644
No 63
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=99.54 E-value=6.1e-14 Score=92.02 Aligned_cols=83 Identities=23% Similarity=0.278 Sum_probs=67.9
Q ss_pred ceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEEEECC
Q psy16403 24 PRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNN 103 (177)
Q Consensus 24 ~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing 103 (177)
+.+|+| +++ .+|||++.+. .. ...+++|..|.++|||+++||+.||+|++|||
T Consensus 2 ~~~v~l-~~~--~~~G~~l~gg-------------~~-----------~~~~v~V~~V~~~spA~~aGl~~GD~I~~vng 54 (85)
T 1rgw_A 2 AYSVTL-TGP--GPWGFRLQGG-------------KD-----------FNMPLTISRITPGSKAAQSQLSQGDLVVAIDG 54 (85)
T ss_dssp EEEEEE-CCS--SCCCEEECCC-------------GG-----------GTSCCBEEEECTTSHHHHSSCCCCSBEEEETT
T ss_pred cEEEEE-eCC--CccCEEEEec-------------cC-----------CCCCeEEEEECCCCHHHHcCCCCCCEEEEECC
Confidence 356777 455 7899998751 11 11368999999999999999999999999999
Q ss_pred EEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy16403 104 QTIADLPYAEVVQLIQNSPAYLHLLVVPKE 133 (177)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~ 133 (177)
.++.+.++.++...++..++.+.+++.|.+
T Consensus 55 ~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~ 84 (85)
T 1rgw_A 55 VNTDTMTHLEAQNKIKSASYNLSLTLQKSK 84 (85)
T ss_dssp EECTTCCHHHHHHHHTTCSSCEEEEEESCC
T ss_pred EECCCcCHHHHHHHHHcCCCeEEEEEEeCC
Confidence 999988889999999877777888887753
No 64
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.54 E-value=1.3e-13 Score=95.54 Aligned_cols=97 Identities=30% Similarity=0.486 Sum_probs=76.2
Q ss_pred CCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhH-cCCCCCCEE
Q psy16403 20 QQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAA-AGLVPGDRV 98 (177)
Q Consensus 20 ~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~-aGl~~GD~I 98 (177)
....+++|+|.|.. ..+|||+|..... ....| .....+++|..|.++|||++ +||+.||+|
T Consensus 7 ~~~~~~~v~l~~~~-~~~lGf~l~~~~~-----------~~~~g------~~~~~~~~V~~V~~~spA~~~agL~~GD~I 68 (114)
T 1uew_A 7 GSLQTSDVVIHRKE-NEGFGFVIISSLN-----------RPESG------STITVPHKIGRIIDGSPADRCAKLKVGDRI 68 (114)
T ss_dssp CCCCCEEEEEECCT-TSCCCEEEECCCC-----------SCCSS------CCSCCSCEEEEECTTCTTGGGSSCCTTCBE
T ss_pred CcccceEEEEEECC-CCCCCEEEEeecc-----------cCCCC------cccccCeEEEEECCCChHHHhCCCCCCCEE
Confidence 44678999999875 4799999986210 00001 11112579999999999999 999999999
Q ss_pred EEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 99 VAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 99 ~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
++|||+++.++++.++..+++..+..+.|++.|.+.
T Consensus 69 ~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~ 104 (114)
T 1uew_A 69 LAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQEE 104 (114)
T ss_dssp EEETTBCTTTSCHHHHHHHHHHTTTEEEEEECCCSC
T ss_pred EEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Confidence 999999999888999999999888889999887554
No 65
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=99.53 E-value=1e-13 Score=96.67 Aligned_cols=92 Identities=22% Similarity=0.359 Sum_probs=75.5
Q ss_pred CCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEE
Q psy16403 21 QLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVV 99 (177)
Q Consensus 21 ~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~ 99 (177)
+...+.|.|.|+. .+|||+|.+ +.+... .....+++|..|.++|+|+++| |+.||+|+
T Consensus 22 ~~~~~~v~l~k~~--~glG~~i~g-------------g~~~~~------~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il 80 (117)
T 2byg_A 22 SMTVVEIKLFKGP--KGLGFSIAG-------------GVGNQH------IPGDNSIYVTKIIDGGAAQKDGRLQVGDRLL 80 (117)
T ss_dssp EEEEEEEEEECBT--TBSSEEEEE-------------CTTSCS------BTTBCCEEEEEECTTSHHHHHCCCCTTCEEE
T ss_pred CCceEEEEEEeCC--CCcCEEEEc-------------ccCCCC------ccCCCCEEEEEECCCCHHHHcCCCCCCCEEE
Confidence 3456889999887 899999986 221100 0112468999999999999999 99999999
Q ss_pred EECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy16403 100 AVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 133 (177)
Q Consensus 100 ~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~ 133 (177)
+|||.++.++++.++..+++..+..+.|++.|.+
T Consensus 81 ~Vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~ 114 (117)
T 2byg_A 81 MVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPT 114 (117)
T ss_dssp EETTEECTTCCHHHHHHHHHTCCSEEEEEEEEEE
T ss_pred EECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCC
Confidence 9999999999999999999988888999998753
No 66
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*
Probab=99.53 E-value=2.1e-13 Score=93.73 Aligned_cols=97 Identities=25% Similarity=0.314 Sum_probs=73.3
Q ss_pred CceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEEEEC
Q psy16403 23 GPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVN 102 (177)
Q Consensus 23 ~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~In 102 (177)
.+|+++|.|.. ..+|||++.+..-..+. .++ ........+++|..|.++|+|+++||+.||+|++||
T Consensus 7 ~~~~v~l~~~~-~~g~G~~l~~~~~~~~~----------~~~--~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~vn 73 (109)
T 1q3o_A 7 KEKTVLLQKKD-SEGFGFVLRGAKAQTPI----------EEF--TPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVN 73 (109)
T ss_dssp EEEEEEEECCT-TSCCSEEEEESSCCCTT----------SCC--CCCSSCCSSEEEEEECTTSHHHHTTCCTTCEEEEET
T ss_pred CcEEEEEEECC-CCCCcEEEEeccCCCCc----------ccc--cccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEEC
Confidence 56889998765 58999999873110000 000 000112236899999999999999999999999999
Q ss_pred CEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy16403 103 NQTIADLPYAEVVQLIQNSPAYLHLLVVPK 132 (177)
Q Consensus 103 g~~v~~~~~~~~~~~l~~~~~~v~l~v~~~ 132 (177)
|+++.+.++.++..+++..+..+.|++++.
T Consensus 74 g~~v~~~~~~~~~~~l~~~~~~v~l~v~~~ 103 (109)
T 1q3o_A 74 GQNVVKVGHRQVVNMIRQGGNTLMVKVVMV 103 (109)
T ss_dssp TEECTTCCHHHHHHHHHHTTTEEEEEEEEE
T ss_pred CEECCCCCHHHHHHHHHhCCCEEEEEEEEC
Confidence 999998888999999988888888888764
No 67
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Probab=99.53 E-value=1.5e-13 Score=95.84 Aligned_cols=89 Identities=21% Similarity=0.417 Sum_probs=75.7
Q ss_pred CCCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCE
Q psy16403 19 SQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDR 97 (177)
Q Consensus 19 ~~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~ 97 (177)
..+..+|+|+|.|.. .+|||++... .. ..+++|..|.++|||+++| |+.||+
T Consensus 10 ~~~~~~~~v~l~k~~--~glG~~l~~~-------------~~------------~~gv~V~~V~~~spA~~aG~L~~GD~ 62 (119)
T 1tp5_A 10 DIPREPRRIVIHRGS--TGLGFNIVGG-------------ED------------GEGIFISFILAGGPADLSGELRKGDQ 62 (119)
T ss_dssp CCCCSCEEEEEECTT--SCCCEEEEEC-------------GG------------GCCEEEEEECTTSHHHHHSCCCTTEE
T ss_pred CCCCccEEEEEEECC--CCccEEEecC-------------CC------------CCCEEEEEECCCCHHHHcCCCCCCCE
Confidence 345688999999988 8899999862 11 1368999999999999999 999999
Q ss_pred EEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 98 VVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 98 I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
|++|||+++.+.++.++...++..+..+.|++.+...
T Consensus 63 I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~~~ 99 (119)
T 1tp5_A 63 ILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE 99 (119)
T ss_dssp EEEETTEECTTCCHHHHHHHHHTSCSEEEEEEEECHH
T ss_pred EEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCc
Confidence 9999999999888888888888888889999988654
No 68
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.53 E-value=8.2e-14 Score=95.08 Aligned_cols=87 Identities=18% Similarity=0.228 Sum_probs=71.0
Q ss_pred CCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEEE
Q psy16403 22 LGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVA 100 (177)
Q Consensus 22 ~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~ 100 (177)
...+.|.|.|.. .+|||+|.+. .+. ..+.++|..|.+++||+++| |+.||+|++
T Consensus 5 ~~~~~v~l~k~~--~glG~~i~gg-------------~~~----------~~~~~~I~~v~~~s~A~~aG~L~~GD~Il~ 59 (103)
T 1ufx_A 5 SSGTLVRVKKSA--ATLGIAIEGG-------------ANT----------RQPLPRIVTIQRGGSAHNCGQLKVGHVILE 59 (103)
T ss_dssp SSSEEEEEECCS--SSCCEEEECB-------------TTS----------SCSSCEEEEECTTSHHHHHCSSCTTCBCCE
T ss_pred CceEEEEEEcCC--CcCCeEEECC-------------CCC----------CCCcEEEEEeCCCChHHHCCCCCCCCEEEE
Confidence 446889998887 9999999862 211 11234999999999999999 999999999
Q ss_pred ECCEEcCCCCHHHHHHHHHc-----CCCeEEEEEEeCC
Q psy16403 101 VNNQTIADLPYAEVVQLIQN-----SPAYLHLLVVPKE 133 (177)
Q Consensus 101 Ing~~v~~~~~~~~~~~l~~-----~~~~v~l~v~~~~ 133 (177)
|||+++.+++|++++.+++. .++.+.++++|.+
T Consensus 60 Vng~~v~~~~~~~~~~~l~~~~~~~~~~~i~l~v~r~~ 97 (103)
T 1ufx_A 60 VNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVTEFN 97 (103)
T ss_dssp ETTEECTTCBHHHHHHHHHHHHHCSSCSEEEEEECCCC
T ss_pred ECCEECCCCCHHHHHHHHHHhcccCCCCeEEEEEEEcc
Confidence 99999998899999999987 3566788877754
No 69
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=99.53 E-value=1.8e-13 Score=91.70 Aligned_cols=84 Identities=13% Similarity=0.269 Sum_probs=72.3
Q ss_pred CCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEEE
Q psy16403 22 LGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVA 100 (177)
Q Consensus 22 ~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~ 100 (177)
..+|.|.|.|.. .++||+|..+ + ...++|.+|.++++|++.| |+.||.|++
T Consensus 4 g~~k~V~l~K~~--~~LG~tI~~~-------------g-------------~g~~~I~rI~~gg~a~r~g~L~vGD~I~~ 55 (95)
T 3gge_A 4 GIEKEVNVYKSE--DSLGLTITDN-------------G-------------VGYAFIKRIKDGGVIDSVKTICVGDHIES 55 (95)
T ss_dssp EEEEEEEEECCS--SCCCEEEECS-------------S-------------SSCCEEEEECTTSHHHHCTTCCTTCEEEE
T ss_pred CeEEEEEEEECC--CCceEEEEcC-------------C-------------CCcEEEEEEcCCChHHhcCCCCCCCEEEE
Confidence 357899999988 9999999751 1 1247999999999999999 999999999
Q ss_pred ECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCC
Q psy16403 101 VNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKE 133 (177)
Q Consensus 101 Ing~~v~~~~~~~~~~~l~~~--~~~v~l~v~~~~ 133 (177)
|||+++.+++|.+++++|+.. +..++|.++++.
T Consensus 56 VNG~~v~g~~h~evv~lLk~~~~g~~~~L~lv~p~ 90 (95)
T 3gge_A 56 INGENIVGWRHYDVAKKLKELKKEELFTMKLIEPK 90 (95)
T ss_dssp ETTEECTTCCHHHHHHHHHHSCTTCEEEEEEEEEC
T ss_pred ECCEEccCCCHHHHHHHHHhCCCCCEEEEEEECcc
Confidence 999999999999999999985 457888887754
No 70
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=99.53 E-value=1.2e-13 Score=92.85 Aligned_cols=89 Identities=25% Similarity=0.416 Sum_probs=72.7
Q ss_pred ceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEEEEC
Q psy16403 24 PRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVN 102 (177)
Q Consensus 24 ~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~In 102 (177)
..+|+|.|+. .+|||++.+. .... .....+++|..|.++|||+++| |++||+|++||
T Consensus 4 ~~~v~l~k~~--~~lG~~i~~~-------------~~~~-------~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~in 61 (97)
T 2jil_A 4 TVEVTLHKEG--NTFGFVIRGG-------------AHDD-------RNKSRPVVITSVRPGGPADREGTIKPGDRLLSVD 61 (97)
T ss_dssp EEEEEEECBT--TBCSEEEEEE-------------CCSC-------C--CEEEEEEEECTTSHHHHHCCCCTTCEEEEET
T ss_pred EEEEEEEeCC--CccCEEEeCc-------------ccCC-------CCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEEC
Confidence 4678888877 8999999762 1100 0112468999999999999999 99999999999
Q ss_pred CEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 103 NQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 103 g~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
|+++.++++.++..+++..+..+.|++.|.+.
T Consensus 62 g~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~ 93 (97)
T 2jil_A 62 GIRLLGTTHAEAMSILKQCGQEAALLIEYDVS 93 (97)
T ss_dssp TEECSSCCHHHHHHHHHHSCSEEEEEEEEECC
T ss_pred CEECCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Confidence 99999888999999998878889999988654
No 71
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A
Probab=99.53 E-value=1.3e-13 Score=97.62 Aligned_cols=86 Identities=31% Similarity=0.366 Sum_probs=72.6
Q ss_pred CCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEEE
Q psy16403 22 LGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVA 100 (177)
Q Consensus 22 ~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~ 100 (177)
....+++|.|+. .+|||++.+.. ....+++|..|.++|+|+++| |+.||+|++
T Consensus 17 g~~~~v~l~~~~--~g~G~~i~g~~------------------------~~~~~v~V~~V~~~spA~~aG~L~~GD~Il~ 70 (129)
T 2kpk_A 17 GKFIHTKLRKSS--RGFGFTVVGGD------------------------EPDEFLQIKSLVLDGPAALDGKMETGDVIVS 70 (129)
T ss_dssp SEEEEEEEEECS--SCCSEEEEEEE------------------------ETTEEEEEEEECTTSHHHHHSSCCTTCEEEE
T ss_pred CcEEEEEEEECC--CcccEEEeCcc------------------------CCCCCEEEEEECCCChHHHcCCCCCCCEEEE
Confidence 345678999988 89999998621 111358999999999999999 999999999
Q ss_pred ECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCC
Q psy16403 101 VNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKE 133 (177)
Q Consensus 101 Ing~~v~~~~~~~~~~~l~~~--~~~v~l~v~~~~ 133 (177)
|||+++.++++.++..+++.. +..+.|++.|..
T Consensus 71 vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~ 105 (129)
T 2kpk_A 71 VNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGY 105 (129)
T ss_dssp ETTEECTTSCHHHHHHHHHHSCTTEEEEEEEEECS
T ss_pred ECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCC
Confidence 999999998999999999876 567999998864
No 72
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.53 E-value=1.9e-13 Score=94.16 Aligned_cols=90 Identities=19% Similarity=0.404 Sum_probs=72.7
Q ss_pred CCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEE
Q psy16403 20 QQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRV 98 (177)
Q Consensus 20 ~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I 98 (177)
.++..+.+++.|+ .+|||++.+ +.+. ....+++|..|.++++|+++| |+.||+|
T Consensus 12 ~~~~~~~v~l~k~---~glG~~i~g-------------g~~~---------~~~~~~~V~~v~~~s~A~~aG~l~~GD~I 66 (109)
T 1wi4_A 12 RDPAFRVITVTKE---TGLGLKILG-------------GINR---------NEGPLVYIHEVIPGGDCYKDGRLKPGDQL 66 (109)
T ss_dssp CCTTEEEEEECCS---SCCCEEEEE-------------CSSS---------SSCSSEEEEEECTTSHHHHHCSCCTTCBE
T ss_pred CCCcEEEEEEeCC---CccCEEEEe-------------ccCC---------CCCCCEEEEEeCCCChHHHCCCCCCCCEE
Confidence 3456788888774 689999986 2111 112368999999999999999 9999999
Q ss_pred EEECCEEcCCCCHHHHHHHHHcCC----CeEEEEEEeCCc
Q psy16403 99 VAVNNQTIADLPYAEVVQLIQNSP----AYLHLLVVPKEN 134 (177)
Q Consensus 99 ~~Ing~~v~~~~~~~~~~~l~~~~----~~v~l~v~~~~~ 134 (177)
++|||+++.+++|++++.+|+... ..+.+.+.|.+.
T Consensus 67 l~Vng~~~~~~~~~~~~~~l~~~~~r~~~~~~l~v~R~~~ 106 (109)
T 1wi4_A 67 VSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIRSGP 106 (109)
T ss_dssp EEETTSCCTTCCHHHHHHHHHHSCCSSSSCEEEEEECCCC
T ss_pred EEECCEECCCCCHHHHHHHHHccccCCCceEEEEEEeCCC
Confidence 999999999999999999998765 568888887643
No 73
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.53 E-value=2.6e-13 Score=93.34 Aligned_cols=92 Identities=29% Similarity=0.448 Sum_probs=76.4
Q ss_pred CCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEE
Q psy16403 21 QLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVV 99 (177)
Q Consensus 21 ~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~ 99 (177)
....++|+|.|+. .+|||++.. +... .....+++|..|.++|||+++| |+.||+|+
T Consensus 6 ~~~~~~v~l~~~~--~glG~~l~~-------------g~~~--------~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~ 62 (110)
T 1um1_A 6 SGYVFTVELERGP--SGLGMGLID-------------GMHT--------HLGAPGLYIQTLLPGSPAAADGRLSLGDRIL 62 (110)
T ss_dssp CCCEEEEEEECCT--TCCCEEEEE-------------TTTS--------TTCCSSEEEEEECTTSHHHHHSCCCTTCEEE
T ss_pred CCcEEEEEEEECC--CccCEEEeC-------------CcCC--------CCCCCCEEEEEECCCChHHHcCCCCCCCEEE
Confidence 3456889999988 899999986 2111 1112578999999999999999 99999999
Q ss_pred EECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Q psy16403 100 AVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135 (177)
Q Consensus 100 ~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~ 135 (177)
+|||+++.+.++.++...++..+..+.|++.|.+..
T Consensus 63 ~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~~ 98 (110)
T 1um1_A 63 EVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDVE 98 (110)
T ss_dssp EESSCBCSSCCHHHHHHHHHTCCSEEEEEEECCCHH
T ss_pred EECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Confidence 999999998899999999998888899999886543
No 74
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=99.53 E-value=2.8e-13 Score=94.05 Aligned_cols=89 Identities=24% Similarity=0.351 Sum_probs=72.9
Q ss_pred CCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEE
Q psy16403 20 QQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRV 98 (177)
Q Consensus 20 ~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I 98 (177)
.+..+|+|+|.|.. ..+|||++... .. ...+++|..|.++|||+++| |+.||+|
T Consensus 21 q~~~~~~V~l~~~~-~~~lG~~l~~~-------------~~-----------~~~~~~V~~V~~gspA~~aG~L~~GD~I 75 (114)
T 2gzv_A 21 QSMVPGKVTLQKDA-QNLIGISIGGG-------------AQ-----------YCPCLYIVQVFDNTPAALDGTVAAGDEI 75 (114)
T ss_dssp -CCCCEEEEEECCT-TSCCSEEEEEC-------------CC-------------CCEEEEEECTTSHHHHHCCCCTTCEE
T ss_pred ccCCCEEEEEEECC-CCcEeEEEEeC-------------CC-----------CCCCEEEEEECCCChHHHCCCCCCCCEE
Confidence 45578999999988 45699999861 11 11368999999999999999 9999999
Q ss_pred EEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy16403 99 VAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 133 (177)
Q Consensus 99 ~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~ 133 (177)
++|||.++.+.++.++..+++..++.+.|++.+..
T Consensus 76 ~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~ 110 (114)
T 2gzv_A 76 TGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQ 110 (114)
T ss_dssp EEETTEECTTCCHHHHHHHHHHCCSEEEEEEECCC
T ss_pred EEECCEECCCCCHHHHHHHHHcCCCeEEEEEEecc
Confidence 99999999777999999999887777888876543
No 75
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=99.52 E-value=6.3e-14 Score=97.51 Aligned_cols=94 Identities=18% Similarity=0.307 Sum_probs=77.4
Q ss_pred CCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEE
Q psy16403 20 QQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRV 98 (177)
Q Consensus 20 ~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I 98 (177)
.+..+++++|.|.. ..+|||++.+.. .. .....+++|..|.++|||+++| |+.||+|
T Consensus 17 ~~~~~~~v~l~k~~-~~~lG~~i~~~~-------------~~--------~~~~~gv~V~~V~~~spA~~aG~l~~GD~I 74 (117)
T 2o2t_A 17 QGRHVEVFELLKPP-SGGLGFSVVGLR-------------SE--------NRGELGIFVQEIQEGSVAHRDGRLKETDQI 74 (117)
T ss_dssp TTSCEEEEEEECCS-SSCSSCCEEEEE-------------CC--------C--CEEEEECCCCTTSHHHHHCCCCTTCEE
T ss_pred cCCeEEEEEEEECC-CCCCCEEEeecc-------------cC--------CCCCCCEEEEEECCCCHHHHCCCCCCCCEE
Confidence 34678999999985 589999987621 00 0112468999999999999999 9999999
Q ss_pred EEECCEEcC-CCCHHHHHHHHHcCCCeEEEEEEeCCcc
Q psy16403 99 VAVNNQTIA-DLPYAEVVQLIQNSPAYLHLLVVPKEND 135 (177)
Q Consensus 99 ~~Ing~~v~-~~~~~~~~~~l~~~~~~v~l~v~~~~~~ 135 (177)
++|||.++. ++++.++..+++..+..+.|++.|.+..
T Consensus 75 l~ing~~v~~~~~~~~~~~~l~~~~~~v~l~v~R~~~~ 112 (117)
T 2o2t_A 75 LAINGQALDQTITHQQAISILQKAKDTVQLVIARGSLP 112 (117)
T ss_dssp EEETTEECCTTSCHHHHHHHHHHCCSEEEEEEESSCCG
T ss_pred EEECCEECCCCCCHHHHHHHHHcCCCEEEEEEEeCCcc
Confidence 999999998 8999999999998888999999886543
No 76
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=99.52 E-value=1.3e-13 Score=91.32 Aligned_cols=83 Identities=22% Similarity=0.273 Sum_probs=67.7
Q ss_pred eEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEEEECCE
Q psy16403 25 RNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQ 104 (177)
Q Consensus 25 r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~ 104 (177)
.++++. ++ .+|||++.+. .. ...+++|..|.++|||+++||+.||+|++|||+
T Consensus 5 ~~v~~~-~~--~~~G~~l~gg-------------~~-----------~~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~ 57 (89)
T 2q3g_A 5 FKVVLE-GP--APWGFRLQGG-------------KD-----------FNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGE 57 (89)
T ss_dssp EEEEEE-SS--SCCCEEEEEE-------------GG-----------GTEEEEEEEECTTSHHHHTTCCTTCEEEEETTE
T ss_pred EEEEEc-CC--CcccEEEECc-------------CC-----------CCCCEEEEEECCCCHHHHcCCCCCCEEEEECCE
Confidence 445554 34 7899999762 11 113689999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 105 TIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 105 ~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
++.++++.++...++..+..+.+++.|.+.
T Consensus 58 ~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~ 87 (89)
T 2q3g_A 58 NAGSLTHIEAQNKIRACGERLSLGLSRAIT 87 (89)
T ss_dssp EGGGCCHHHHHHHHHTCTTEEEEEEEEECC
T ss_pred ECCCCCHHHHHHHHHhCCCEEEEEEEeCCC
Confidence 999888999999998888889999987543
No 77
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.52 E-value=2.9e-14 Score=98.39 Aligned_cols=98 Identities=29% Similarity=0.377 Sum_probs=76.7
Q ss_pred CCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEE
Q psy16403 20 QQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRV 98 (177)
Q Consensus 20 ~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I 98 (177)
.++..|+|+|.|.. ..+|||++.+. ..... -........+++|..|.++|+|+++| |+.||+|
T Consensus 6 ~~~~~~~v~l~k~~-~~~lG~~i~gg-------------~~~~~--~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I 69 (111)
T 1uju_A 6 SGPGLRELCIQKAP-GERLGISIRGG-------------ARGHA--GNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRL 69 (111)
T ss_dssp CSCSSSCEEEECCT-TCCCCEEEECC-------------SSSSC--SCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBC
T ss_pred CCCccEEEEEEECC-CCccCEEEECC-------------ccccc--cccccCCCCCEEEEEECCCCHHHHcCCCCCCCEE
Confidence 45667889999886 68999999872 11000 00001223578999999999999999 9999999
Q ss_pred EEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy16403 99 VAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 133 (177)
Q Consensus 99 ~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~ 133 (177)
++|||+++.++++.++..+++..+..+.|++.|..
T Consensus 70 l~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~ 104 (111)
T 1uju_A 70 LEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDGF 104 (111)
T ss_dssp CBBSSCBCTTSCHHHHHHHHSSCSSEEEECCCCCC
T ss_pred EEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECC
Confidence 99999999999999999999888888888887643
No 78
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=99.52 E-value=1.4e-13 Score=94.20 Aligned_cols=86 Identities=28% Similarity=0.355 Sum_probs=71.6
Q ss_pred CCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC--CCCCCEE
Q psy16403 21 QLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG--LVPGDRV 98 (177)
Q Consensus 21 ~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG--l~~GD~I 98 (177)
....+++.|.|.. ..+|||.+.+. .. ...+++|..|.++|+|+++| |+.||+|
T Consensus 15 ~~~~~~v~l~~~~-~~~~G~~~~gg-------------~~-----------~~~~~~V~~V~~~spA~~aG~rL~~GD~I 69 (107)
T 3nfk_A 15 HDNLVLIRMKPDE-NGRFGFNVKGG-------------YD-----------QKMPVIVSRVAPGTPADLCVPRLNEGDQV 69 (107)
T ss_dssp -CCCEEEEECCCT-TSCCCEEEEEE-------------GG-----------GTEEEEEEEECTTSHHHHSSSCCCTTCEE
T ss_pred CCCEEEEEEEcCC-CCCCCEEEEcc-------------CC-----------CCCCeEEEEECCCCchHHcCCccCCCCEE
Confidence 4557889998886 68999999762 11 11357999999999999999 9999999
Q ss_pred EEECCEEcCCCCHHHHHHHHHcCCC----eEEEEEEe
Q psy16403 99 VAVNNQTIADLPYAEVVQLIQNSPA----YLHLLVVP 131 (177)
Q Consensus 99 ~~Ing~~v~~~~~~~~~~~l~~~~~----~v~l~v~~ 131 (177)
++|||.++.++++.++..+++..++ .+.|++.|
T Consensus 70 l~ing~~v~~~~~~~~~~~i~~~~~~~~~~v~l~v~r 106 (107)
T 3nfk_A 70 VLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRP 106 (107)
T ss_dssp EEETTEECTTCCHHHHHHHHHCGGGSBTTBEEEEEEC
T ss_pred EEECCEECCCCCHHHHHHHHHhccccCCcEEEEEEEc
Confidence 9999999999999999999988764 78888865
No 79
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A
Probab=99.52 E-value=2.5e-13 Score=96.12 Aligned_cols=101 Identities=23% Similarity=0.292 Sum_probs=78.3
Q ss_pred CCCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCE
Q psy16403 19 SQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDR 97 (177)
Q Consensus 19 ~~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~ 97 (177)
..+..+|.|.|.|.+...+|||++....-.. ....|+ ....+++|..|.++|+|+++| |+.||+
T Consensus 25 ~~~~~~r~v~l~k~~~~~~lG~~i~~~~~~~---------~~~~g~------~~~~gv~V~~V~~~spA~~aG~L~~GD~ 89 (128)
T 1nf3_C 25 ILPETHRRVRLCKYGTEKPLGFYIRDGSSVR---------VTPHGL------EKVPGIFISRLVPGGLAQSTGLLAVNDE 89 (128)
T ss_dssp TSCTTCEEEEECCSSTTSCCCEEEEEEEEEE---------EETTEE------EEEEEEEEEEECTTCHHHHHTCCCTTCE
T ss_pred cCCCccEEEEEEECCCCCCccEEEEcccccc---------cccccc------CCCCCEEEEEECCCCHHHHCCCCCCCCE
Confidence 4566789999999854589999998621000 000010 011368999999999999999 999999
Q ss_pred EEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 98 VVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 98 I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
|++|||.++.+.++.++..+++..+..+.|++.|.+.
T Consensus 90 Il~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~ 126 (128)
T 1nf3_C 90 VLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQ 126 (128)
T ss_dssp EEEETTEESTTCCHHHHHHHHHHTTTSEEEEEECCCC
T ss_pred EEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCc
Confidence 9999999998889999999999888889999987653
No 80
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.52 E-value=7e-13 Score=91.18 Aligned_cols=96 Identities=21% Similarity=0.301 Sum_probs=75.7
Q ss_pred CCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEE
Q psy16403 20 QQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVV 99 (177)
Q Consensus 20 ~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~ 99 (177)
.+....++.+.+.. .+|||++.+. .....+ .....+++|..|.++|||+++||++||+|+
T Consensus 12 ~~~~~~~~~l~~~~--~glG~~i~~g-------------~~~~~~-----~~~~~g~~V~~V~~~spA~~aGL~~GD~I~ 71 (110)
T 1x5q_A 12 IEEEELTLTILRQT--GGLGISIAGG-------------KGSTPY-----KGDDEGIFISRVSEEGPAARAGVRVGDKLL 71 (110)
T ss_dssp CCCEEEEEEEECSS--SSCSEEEEEC-------------TTSCCS-----STTCCSEEEEEECTTSHHHHHTCCTTCEEE
T ss_pred CCcceEEEEEecCC--CeeeEEEEcc-------------ccCCcc-----ccCCCCEEEEEECCCCHHHHcCCCCCCEEE
Confidence 34456778888876 9999999862 111000 112357899999999999999999999999
Q ss_pred EECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Q psy16403 100 AVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135 (177)
Q Consensus 100 ~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~ 135 (177)
+|||+++.+.++.++...++..+..+.|++.|++..
T Consensus 72 ~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g~~ 107 (110)
T 1x5q_A 72 EVNGVALQGAEHHEAVEALRGAGTAVQMRVWRESGP 107 (110)
T ss_dssp EETTEECTTCCHHHHHHHHHSCCSEEEEEEEECSSC
T ss_pred EECCEECCCcCHHHHHHHhhCCCCeEEEEEEECCcc
Confidence 999999998889888888887888899999986543
No 81
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=99.52 E-value=3.4e-13 Score=91.60 Aligned_cols=98 Identities=31% Similarity=0.446 Sum_probs=72.9
Q ss_pred CCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEEE
Q psy16403 22 LGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVA 100 (177)
Q Consensus 22 ~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~ 100 (177)
..|+++.+.|.. ...|||.+.... . .+.... +.....+++|..|.++|||+++| |++||+|++
T Consensus 3 ldp~~v~l~~~~-~~~lG~~~~~~~-------------~-~~~~~~-~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ 66 (103)
T 2fcf_A 3 MQPRRVELWREP-SKSLGISIVGGR-------------G-MGSRLS-NGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVE 66 (103)
T ss_dssp CSCEEEEECCCC--CCCCEEEECCC-------------C---------------EEEEEECSSSHHHHHCCCCTTCEEEE
T ss_pred CCCEEEEEEeCC-CCceeEEEEccC-------------C-CCcccc-cCCCCCCEEEEEeCCCCcHHHcCCCCCCCEEEE
Confidence 467999999876 568999987621 0 000000 01112478999999999999999 999999999
Q ss_pred ECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Q psy16403 101 VNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135 (177)
Q Consensus 101 Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~ 135 (177)
|||.++.++++.++..+++..++.+.+++.|....
T Consensus 67 ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~ 101 (103)
T 2fcf_A 67 VDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIIST 101 (103)
T ss_dssp ETTEECTTCCHHHHHHHHHTCCSSEEEEEECCCCC
T ss_pred ECCEECCCCCHHHHHHHHHhCCCcEEEEEEECCCC
Confidence 99999998789999999998877899999876543
No 82
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=99.51 E-value=2.1e-13 Score=90.61 Aligned_cols=84 Identities=25% Similarity=0.327 Sum_probs=69.1
Q ss_pred ceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEEEECC
Q psy16403 24 PRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNN 103 (177)
Q Consensus 24 ~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing 103 (177)
++++++. ++ .+|||++... .. ...+++|..|.++|||+++||++||+|++|||
T Consensus 4 ~~~v~~~-~~--~~~G~~l~~~-------------~~-----------~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing 56 (91)
T 2pkt_A 4 TQQIDLQ-GP--GPWGFRLVGG-------------KD-----------FEQPLAISRVTPGSKAALANLCIGDVITAIDG 56 (91)
T ss_dssp EEEEEEE-SS--SCCSEEEEEE-------------GG-----------GTEEEEEEEECTTSHHHHTTCCTTCEEEEETT
T ss_pred cEEEEEC-CC--CCCCEEEEcc-------------CC-----------CCCCeEEEEECCCCHHHHcCCCCCCEEEEECC
Confidence 4566665 34 6899998762 11 11357999999999999999999999999999
Q ss_pred EEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 104 QTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
.++.+.++.++..+++..+..+.+++.|.+.
T Consensus 57 ~~v~~~~~~~~~~~l~~~g~~v~l~v~R~g~ 87 (91)
T 2pkt_A 57 ENTSNMTHLEAQNRIKGCTDNLTLTVARSEH 87 (91)
T ss_dssp EECTTCCHHHHHHHHHTCSSEEEEEEEEECC
T ss_pred EECCCCCHHHHHHHHHcCCCeEEEEEEECCc
Confidence 9999888889999998878889999988654
No 83
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=99.51 E-value=1.2e-13 Score=97.72 Aligned_cols=93 Identities=23% Similarity=0.381 Sum_probs=77.1
Q ss_pred CCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEE
Q psy16403 20 QQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRV 98 (177)
Q Consensus 20 ~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I 98 (177)
.+..+++|.|.|+. ..+|||++.+.. .. .....+++|..|.++++|+++| |+.||+|
T Consensus 22 ~~~~~~~v~l~k~~-~~~lG~~i~g~~-------------~~--------~~~~~gv~V~~V~~~spA~~aG~L~~GD~I 79 (128)
T 2db5_A 22 QGRQIEYIDIERPS-TGGLGFSVVALR-------------SQ--------NLGKVDIFVKDVQPGSVADRDQRLKENDQI 79 (128)
T ss_dssp TTCEEEEEEEECCS-SSCCCCEEEEEE-------------CS--------SSSCEEEEEECCCTTSHHHHTCCCCSSCBE
T ss_pred ccCceEEEEEEECC-CCccCEEEeccc-------------CC--------CCCCCCEEEEEECCCCHHHHcCCCCCCCEE
Confidence 35678899999987 579999997621 10 0112368999999999999999 9999999
Q ss_pred EEECCEEcC-CCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 99 VAVNNQTIA-DLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 99 ~~Ing~~v~-~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
++|||+++. ++++.+++.+++..+..+.|++.|...
T Consensus 80 l~ing~~v~~~~~~~~~~~~l~~~~~~v~l~v~r~~~ 116 (128)
T 2db5_A 80 LAINHTPLDQNISHQQAIALLQQTTGSLRLIVAREPV 116 (128)
T ss_dssp EEESSCBCSTTSCHHHHHHHHHHCCSEEEEEEEECCC
T ss_pred EEECCEECCCCCCHHHHHHHHHcCCCeEEEEEEcCCC
Confidence 999999997 999999999999888889999988643
No 84
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=99.51 E-value=1.8e-13 Score=90.72 Aligned_cols=79 Identities=25% Similarity=0.450 Sum_probs=67.0
Q ss_pred EEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEEEECCE
Q psy16403 26 NLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQ 104 (177)
Q Consensus 26 ~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~Ing~ 104 (177)
.++|.+......|||.+.. +++|..|.++|+|+++| |+.||+|++|||+
T Consensus 3 ~v~l~~~~~~~~~G~~~~~------------------------------gv~V~~V~~gspA~~aG~L~~GD~Il~ing~ 52 (88)
T 3e17_A 3 GVLLMKSRANEEYGLRLGS------------------------------QIFVKEMTRTGLATKDGNLHEGDIILKINGT 52 (88)
T ss_dssp EEEEECBTTBCCCCEEEEE------------------------------EEEEEEECTTSHHHHHCCCCTTCEEEEETTE
T ss_pred EEEEEeCCCCCCCCEEEeC------------------------------CEEEEEECCCCHHHHcCCCCCCCEEEEECCE
Confidence 3566665545788888764 57999999999999999 9999999999999
Q ss_pred EcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 105 TIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 105 ~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
++.+.+++++..+++..++.+.|++.+...
T Consensus 53 ~v~~~~~~~~~~~i~~~~~~v~L~v~~~~~ 82 (88)
T 3e17_A 53 VTENMSLTDARKLIEKSRGKLQLVVLRDLE 82 (88)
T ss_dssp ECTTCCHHHHHHHHHHTTTEEEEEECCC--
T ss_pred ECCCCCHHHHHHHHHcCCCeEEEEEeCCCc
Confidence 998889999999999999999998876543
No 85
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=9.8e-14 Score=92.55 Aligned_cols=85 Identities=21% Similarity=0.247 Sum_probs=71.9
Q ss_pred CCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEE
Q psy16403 20 QQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRV 98 (177)
Q Consensus 20 ~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I 98 (177)
....+|+|.|.|.. ..+|||++... ..+++|..|.++|||+++| |+.||+|
T Consensus 3 ~~~~~r~v~l~k~~-~~~lG~~i~~~---------------------------~~~v~V~~V~~~spA~~ag~L~~GD~I 54 (91)
T 2e7k_A 3 SGSSGRMVGIRKTA-GEHLGVTFRVE---------------------------GGELVIARILHGGMVAQQGLLHVGDII 54 (91)
T ss_dssp CCCCSCBCCBCCCT-TCCCCEEEEES---------------------------SSSEEEEEECSSSHHHHHCCCCTTCEE
T ss_pred CCCCcEEEEEEECC-CCcEeEEEEec---------------------------CCCEEEEEECCCCHHHHcCCCCCCCEE
Confidence 34567889998765 57899998751 1368999999999999987 9999999
Q ss_pred EEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy16403 99 VAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 133 (177)
Q Consensus 99 ~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~ 133 (177)
++|||+++ +.+++++..+++..++.+.|++.+..
T Consensus 55 ~~ing~~v-~~~~~~~~~~l~~~~~~v~l~v~~~~ 88 (91)
T 2e7k_A 55 KEVNGQPV-GSDPRALQELLRNASGSVILKILSGP 88 (91)
T ss_dssp EEETTEEC-TTCHHHHHHHHHTCCSSBCEEEECCS
T ss_pred EEECCEEC-CCCHHHHHHHHHcCCCeEEEEEEECC
Confidence 99999999 66999999999988888888888743
No 86
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=99.51 E-value=1.1e-13 Score=94.34 Aligned_cols=95 Identities=21% Similarity=0.317 Sum_probs=73.7
Q ss_pred CCCCCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCC
Q psy16403 17 KSSQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGD 96 (177)
Q Consensus 17 ~~~~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD 96 (177)
++..+..++.++|.|.. ..+|||.+....... .. +.....+++|..|.+++||+++||++||
T Consensus 9 ~p~s~~~~~~v~l~~~~-~~~~G~~l~~~~~~~---------~~--------~~~~~~~~~V~~V~~~spA~~aGl~~GD 70 (104)
T 2z17_A 9 SDFSWSQRKLVTVEKQD-NETFGFEIQSYRPQN---------QN--------ACSSEMFTLICKIQEDSPAHCAGLQAGD 70 (104)
T ss_dssp --CCCSCCCEEEEECCT-TSCCSEEEEECCCCC---------CS--------SSCCSCCEEEEEECTTSHHHHHTCCTTC
T ss_pred ccCCCCcceEEEEEeCC-CCCccEEEEeeeccc---------CC--------cccCCCCeEEEEECCCChHHHcCCCCCC
Confidence 45567888999999986 478999998621000 00 0112247899999999999999999999
Q ss_pred EEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEE
Q psy16403 97 RVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129 (177)
Q Consensus 97 ~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v 129 (177)
+|++|||+++.++++.++..+++..++.+.|++
T Consensus 71 ~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v 103 (104)
T 2z17_A 71 VLANINGVSTEGFTYKQVVDLIRSSGNLLTIET 103 (104)
T ss_dssp BCCEETTEECTTCCHHHHHHHHHHTTTEEEEEC
T ss_pred EEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEE
Confidence 999999999999999999999998777776654
No 87
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=99.51 E-value=3.7e-13 Score=92.00 Aligned_cols=90 Identities=19% Similarity=0.314 Sum_probs=72.7
Q ss_pred CCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEEE
Q psy16403 22 LGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVA 100 (177)
Q Consensus 22 ~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~ 100 (177)
....+++| |+. .+|||++.+.. . ......+++|..|.++|||+++| |+.||+|++
T Consensus 10 ~~~~~v~l-~~~--~glG~~i~~~~-------------~--------~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ 65 (106)
T 3axa_A 10 PEIITVTL-KKQ--NGMGLSIVAAK-------------G--------AGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLS 65 (106)
T ss_dssp CCEEEEEE-ECS--SSCSEEEEEEE-------------C--------SSCSSEEEEEEEEBTTSHHHHHCCCCTTCEEEE
T ss_pred ceEEEEEE-CCC--CccCEEEEeec-------------C--------CCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEE
Confidence 34455666 666 89999997621 0 01122468999999999999999 999999999
Q ss_pred ECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Q psy16403 101 VNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135 (177)
Q Consensus 101 Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~ 135 (177)
|||+++.++++.++...++..+..+.|++.|.+..
T Consensus 66 ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~ 100 (106)
T 3axa_A 66 VDGRSLVGLSQERAAELMTRTSSVVTLEVAKQGAI 100 (106)
T ss_dssp ETTEECTTCCHHHHHHHHHTCCSEEEEEEECCCSS
T ss_pred ECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Confidence 99999999999999999988888899999886543
No 88
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.51 E-value=2.2e-13 Score=95.75 Aligned_cols=90 Identities=24% Similarity=0.432 Sum_probs=76.2
Q ss_pred CCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEE
Q psy16403 21 QLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVV 99 (177)
Q Consensus 21 ~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~ 99 (177)
+...++|.|.|.. .+|||++.+. .. ....+++|..|.++|||+++| |++||+|+
T Consensus 23 ~~~~~~v~l~k~~--~glG~~l~~~-------------~~----------~~~~gv~V~~V~~~spA~~aG~L~~GD~Il 77 (124)
T 2daz_A 23 PGELHIIELEKDK--NGLGLSLAGN-------------KD----------RSRMSIFVVGINPEGPAAADGRMRIGDELL 77 (124)
T ss_dssp SSEEEEEEEECCS--SCCCEEEECB-------------SS----------TTSCCEEEEEECTTSHHHHHTCCCTTCEEC
T ss_pred CCceEEEEEEeCC--CccCEEEecc-------------CC----------CCcCCEEEEEECCCCHHHHcCCCCCCCEEE
Confidence 4456889999987 8999999862 11 112478999999999999999 99999999
Q ss_pred EECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Q psy16403 100 AVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135 (177)
Q Consensus 100 ~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~ 135 (177)
+|||+++.+.++.++...++..+..+.|++.|.+..
T Consensus 78 ~Ing~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~~ 113 (124)
T 2daz_A 78 EINNQILYGRSHQNASAIIKTAPSKVKLVFIRNEDA 113 (124)
T ss_dssp EESSCBCTTSCHHHHHHHHHHSCSEEEEEEEECTTH
T ss_pred EECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Confidence 999999998899999999988888899999987654
No 89
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=3.9e-13 Score=90.97 Aligned_cols=89 Identities=22% Similarity=0.332 Sum_probs=73.3
Q ss_pred CCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEEE
Q psy16403 21 QLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVA 100 (177)
Q Consensus 21 ~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~ 100 (177)
...+++++|.|.. ...|||++... .. ...+++|..|.++|||+++||++||+|++
T Consensus 8 ~~~~~~v~l~~~~-~~~lG~~~~~~-------------~~-----------~~~gv~V~~V~~~spA~~aGL~~GD~I~~ 62 (100)
T 2eeh_A 8 SDIIHSVRVEKSP-AGRLGFSVRGG-------------SE-----------HGLGIFVSKVEEGSSAERAGLCVGDKITE 62 (100)
T ss_dssp CCEECCEEECCCS-SSSCSEEEECC-------------TT-----------TTCCEEEEEECTTSHHHHHTCCSSCEEEE
T ss_pred CCeEEEEEEEECC-CCCccEEEEcc-------------cc-----------CCCCEEEEEECCCCHHHHcCCCCCCEEEE
Confidence 3457889999887 45699998762 11 12468999999999999999999999999
Q ss_pred ECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Q psy16403 101 VNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135 (177)
Q Consensus 101 Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~ 135 (177)
|||.++.+.++.++...++. +..+.|++.|.+..
T Consensus 63 ing~~v~~~~~~~~~~~~~~-~~~v~l~v~R~g~~ 96 (100)
T 2eeh_A 63 VNGLSLESTTMGSAVKVLTS-SSRLHMMVRRMGSG 96 (100)
T ss_dssp ETTEECSSCCHHHHHHHHHS-CSSEEEEEEECSCC
T ss_pred ECCEECCCCCHHHHHHhhcC-CCEEEEEEEECCcC
Confidence 99999998888999999886 78899999886543
No 90
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.50 E-value=8.8e-14 Score=97.10 Aligned_cols=89 Identities=27% Similarity=0.356 Sum_probs=73.3
Q ss_pred CCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHc--CCCCCCE
Q psy16403 20 QQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAA--GLVPGDR 97 (177)
Q Consensus 20 ~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~a--Gl~~GD~ 97 (177)
....+++|+|.|+. ..+|||++.+. .. ...+++|..|.++|||+++ ||+.||+
T Consensus 12 ~~~~~~~v~l~k~~-~~~~G~~l~gg-------------~~-----------~~~~v~V~~V~~~spA~~a~gGL~~GD~ 66 (119)
T 2cs5_A 12 PHDNLVLIRMKPDE-NGRFGFNVKGG-------------YD-----------QKMPVIVSRVAPGTPADLCVPRLNEGDQ 66 (119)
T ss_dssp CSSCCEEEEECCCS-SSCCSEEEEEE-------------GG-----------GTEEEEEEEECSSSTTTSSSSCCCTTCE
T ss_pred CCCCeEEEEEEeCC-CCCcCEEEecc-------------cC-----------CCCCeEEEEECCCCHHHHhhcCCCCCCE
Confidence 34467999999987 45799999862 11 1135899999999999999 8999999
Q ss_pred EEEECCEEcCCCCHHHHHHHHHcCC----CeEEEEEEeCC
Q psy16403 98 VVAVNNQTIADLPYAEVVQLIQNSP----AYLHLLVVPKE 133 (177)
Q Consensus 98 I~~Ing~~v~~~~~~~~~~~l~~~~----~~v~l~v~~~~ 133 (177)
|++|||+++.++++.++..+++..+ ..+.|++.|..
T Consensus 67 Il~ing~~v~~~~~~~~~~~~~~~~~~~~~~v~l~v~R~~ 106 (119)
T 2cs5_A 67 VVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNA 106 (119)
T ss_dssp EEEETTBCTTSSCHHHHHHHHHHHHHCCSSCEEEEEECCC
T ss_pred EEEECCEECCCCCHHHHHHHHHhccccCCCEEEEEEEccc
Confidence 9999999999889999999998764 47889888754
No 91
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.50 E-value=1.6e-13 Score=94.14 Aligned_cols=96 Identities=23% Similarity=0.379 Sum_probs=75.9
Q ss_pred CCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEE
Q psy16403 21 QLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVV 99 (177)
Q Consensus 21 ~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~ 99 (177)
+...++|.|.|+. .+|||++.... +. -+... .....+++|..|.++|||+++| |+.||+|+
T Consensus 7 ~~~~~~v~l~k~~--~~lG~~i~~~~---~~-----gg~~~--------~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~ 68 (108)
T 1q7x_A 7 PGDIFEVELAKND--NSLGISVTVLF---DK-----GGVNT--------SVRHGGIYVKAVIPQGAAESDGRIHKGDRVL 68 (108)
T ss_dssp SSSEEEEEEESSS--CSCCEEESSSS---SS-----BCBCT--------TSSSCCCBEEEECTTSTHHHHTCCCSSCEEE
T ss_pred CCcEEEEEEEECC--CCccEEEEEec---cC-----CCccc--------cCCCCCEEEEEECCCChHHHCCCCCCCCEEE
Confidence 4567889999988 89999998200 00 01110 0112578999999999999999 99999999
Q ss_pred EECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 100 AVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 100 ~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
+|||+++.++++.++...++..+..+.|++.|.+.
T Consensus 69 ~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~ 103 (108)
T 1q7x_A 69 AVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQS 103 (108)
T ss_dssp EETTEECBSCTTSHHHHHHHHTTSEEEEEEECCCC
T ss_pred EECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Confidence 99999999889999999999888889999988654
No 92
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.49 E-value=1.6e-13 Score=94.68 Aligned_cols=89 Identities=20% Similarity=0.425 Sum_probs=75.6
Q ss_pred CCCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCE
Q psy16403 19 SQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDR 97 (177)
Q Consensus 19 ~~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~ 97 (177)
..+..+|.|+|.|.. .+|||++... .. ..+++|..|.++++|+++| |+.||+
T Consensus 11 ~~~~~~~~v~l~k~~--~glG~~l~~~-------------~~------------~~gv~V~~V~~~s~A~~aG~L~~GD~ 63 (113)
T 1um7_A 11 GDAREPRKIILHKGS--TGLGFNIVGG-------------ED------------GEGIFVSFILAGGPADLSGELRRGDR 63 (113)
T ss_dssp CCCCSEEEEEEECCS--SCSSBCCBCC-------------ST------------TCCCBCCCBCSSSHHHHTTCCCTTCE
T ss_pred cCCCceEEEEEEECC--CcccEEEEec-------------cC------------CCCEEEEEECCCCHHHHcCCCCCCCE
Confidence 346788999999987 8999998751 11 2467899999999999999 999999
Q ss_pred EEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 98 VVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 98 I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
|++|||+++.+.++.++..+++..+..+.|++.++..
T Consensus 64 Il~Vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~~~ 100 (113)
T 1um7_A 64 ILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPE 100 (113)
T ss_dssp EEEESSCBCTTCCHHHHHHHHHSCCSEEEEEEECCHH
T ss_pred EEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEECcc
Confidence 9999999999888899999998888888998887543
No 93
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.49 E-value=3.5e-13 Score=93.85 Aligned_cols=95 Identities=20% Similarity=0.254 Sum_probs=75.0
Q ss_pred CCCceEEEEecCCC-----CCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCC
Q psy16403 21 QLGPRNLILRRSAA-----LNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVP 94 (177)
Q Consensus 21 ~~~~r~v~l~r~~~-----~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~ 94 (177)
+...+.++|.|... ..+|||+|.+.. .... .....+++|..|.++|+|+++| |++
T Consensus 10 ~~~~~~v~l~r~~~~~~~~~~glG~~i~g~~-------------~~~~------~~~~~g~~V~~v~~~s~A~~aG~L~~ 70 (117)
T 1ujd_A 10 IFPHARIKITRDSKDHTVSGNGLGIRIVGGK-------------EIPG------HSGEIGAYIAKILPGGSAEQTGKLME 70 (117)
T ss_dssp SSCEEEEEECCCSSSSCSSCCSCSEEEEEEE-------------ECSS------SSSCEEEEEEEECTTCHHHHHSSCCT
T ss_pred CCceEEEEEEecCcccCCCCCcccEEEeCCC-------------CCCc------ccCCcCEEEEEECCCCHHHHcCCCCC
Confidence 34557888988762 368999998631 1000 0112368999999999999999 999
Q ss_pred CCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 95 GDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 95 GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
||+|++|||.++.+++|.++..+++..+..+.|++.|+..
T Consensus 71 GD~Il~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~ 110 (117)
T 1ujd_A 71 GMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLDLN 110 (117)
T ss_dssp TCEEEEETTEECTTCCHHHHHHHHSCCSSCEEEEEESSCC
T ss_pred CCEEEEECCEEcCCCCHHHHHHHHhcCCCEEEEEEEECCc
Confidence 9999999999999989999999999888889999987543
No 94
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=99.49 E-value=5.4e-13 Score=93.83 Aligned_cols=101 Identities=31% Similarity=0.427 Sum_probs=75.7
Q ss_pred CCCCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCC
Q psy16403 18 SSQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGD 96 (177)
Q Consensus 18 ~~~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD 96 (177)
.+.+..|+++.+.|.. ...|||.+.... . .+... .+.....+++|..|.++|||+++| |++||
T Consensus 19 ~s~~~~p~~v~l~k~~-~~~lGi~v~~~~-------------~-~~~~~-~~~~~~~gv~V~~V~~~spA~~aG~L~~GD 82 (123)
T 2iwq_A 19 YFQSMQPRRVELWREP-SKSLGISIVGGR-------------G-MGSRL-SNGEVMRGIFIKHVLEDSPAGKNGTLKPGD 82 (123)
T ss_dssp ----CCCEEEEECCCT-TSCCSEEEEECC------------------------CCCCSEEEEEECSSSHHHHHCCCCTTC
T ss_pred CcccCCCEEEEEEecC-CCCccEEEEecc-------------C-ccccc-cccCCCCCEEEEEECCCChHHHcCCCCCCC
Confidence 3566788999999886 578999987521 0 00000 011223579999999999999999 99999
Q ss_pred EEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 97 RVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 97 ~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
+|++|||.++.++++.++..+++..++.+.|++.|...
T Consensus 83 ~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~ 120 (123)
T 2iwq_A 83 RIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIIS 120 (123)
T ss_dssp EEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEECCCC
T ss_pred EEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCc
Confidence 99999999999888999999999888889999887554
No 95
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.49 E-value=3.3e-13 Score=93.64 Aligned_cols=91 Identities=21% Similarity=0.365 Sum_probs=75.0
Q ss_pred CCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEE
Q psy16403 20 QQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRV 98 (177)
Q Consensus 20 ~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I 98 (177)
.+...+.+.|.+.. .+|||++... .+ ....+++|..|.++|+|+++| |+.||+|
T Consensus 14 ~~~~~~~v~l~~~~--~glG~~l~~~-------------~~----------~~~~gv~V~~V~~~spA~~aG~L~~GD~I 68 (116)
T 2dm8_A 14 VPGQEMIIEISKGR--SGLGLSIVGG-------------KD----------TPLNAIVIHEVYEEGAAARDGRLWAGDQI 68 (116)
T ss_dssp CTTSCEEEEEECCS--SCCCCCCBCC-------------TT----------SSCSSEECCCCCSSSHHHHHTCCCTTCEE
T ss_pred CCCCEEEEEEEECC--CcccEEEeCC-------------CC----------CCcCCEEEEEECCCChHHhCCCCCCCCEE
Confidence 44556889998887 8999998751 11 111368999999999999999 9999999
Q ss_pred EEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Q psy16403 99 VAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135 (177)
Q Consensus 99 ~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~ 135 (177)
++|||+++.++++.++..+++..+..+.|++.|.+..
T Consensus 69 ~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~~ 105 (116)
T 2dm8_A 69 LEVNGVDLRNSSHEEAITALRQTPQKVRLVVYRDEAH 105 (116)
T ss_dssp EEETTEECSSSCHHHHHHHHHTCCSEEEEEEECCSSC
T ss_pred EEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeCCcc
Confidence 9999999998889999999988788899999886543
No 96
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=99.49 E-value=2.3e-13 Score=89.92 Aligned_cols=82 Identities=26% Similarity=0.388 Sum_probs=65.8
Q ss_pred CceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEEEEC
Q psy16403 23 GPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVN 102 (177)
Q Consensus 23 ~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~In 102 (177)
..++|+|.|+. .+|||++... .. ..+++|..+ ++|||+ +||++||+|++||
T Consensus 3 ~~~~v~l~k~~--~g~G~~~~~~-------------~~------------~~~~~v~~v-~~spA~-aGl~~GD~I~~vn 53 (88)
T 3bpu_A 3 ELITVHIVKGP--MGFGFTIADS-------------PG------------GGGQRVKQI-VDSPRS-RGLKEGDLIVEVN 53 (88)
T ss_dssp EEEEEEEECBT--TBSSCEEEEC-------------TT------------SSSEEEEEC-CC--CC-TTCCTTCEEEEET
T ss_pred cEEEEEEEcCC--CceeEEEEec-------------CC------------CCcEEEEEe-cCChhH-hCCCCCCEEEEEC
Confidence 46889999988 8999999751 11 135677776 999999 9999999999999
Q ss_pred CEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCC
Q psy16403 103 NQTIADLPYAEVVQLIQN--SPAYLHLLVVPKE 133 (177)
Q Consensus 103 g~~v~~~~~~~~~~~l~~--~~~~v~l~v~~~~ 133 (177)
|.++.+.++.++...++. .+..+.|++.|.+
T Consensus 54 g~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g 86 (88)
T 3bpu_A 54 KKNVQALTHNQVVDMLVESPKGSEVTLLVQRQT 86 (88)
T ss_dssp TEECTTSCHHHHHHHHHTSCTTCEEEEEEEEEC
T ss_pred CEEcCCCCHHHHHHHHHhCCCCCEEEEEEEeCC
Confidence 999998888999999985 4678899888753
No 97
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.49 E-value=6.2e-13 Score=88.55 Aligned_cols=80 Identities=20% Similarity=0.422 Sum_probs=68.1
Q ss_pred CCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEEEE
Q psy16403 22 LGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAV 101 (177)
Q Consensus 22 ~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~I 101 (177)
..++.+++.+.....+|||.+.. + +|..|.++|+|+++||+.||+|++|
T Consensus 10 ~~~~~~~i~~~~~~~~lG~~~~~------------------------------G-~V~~V~~~spA~~aGL~~GD~Il~I 58 (90)
T 1y7n_A 10 GNVTTVLIRRPDLRYQLGFSVQN------------------------------G-IICSLMRGGIAERGGVRVGHRIIEI 58 (90)
T ss_dssp SSCEEEEEEESSTTSCCCEEEET------------------------------T-EEEEECTTSHHHHHTCCSSCEEEEE
T ss_pred CCcceEEEEeCCCccccCeEecC------------------------------C-EEEEECCCCHHHHcCCCCCCEEEEE
Confidence 45567777776656789998753 3 7889999999999999999999999
Q ss_pred CCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy16403 102 NNQTIADLPYAEVVQLIQNSPAYLHLLVVPK 132 (177)
Q Consensus 102 ng~~v~~~~~~~~~~~l~~~~~~v~l~v~~~ 132 (177)
||.++.+.++.++..+++..+..+.|++++.
T Consensus 59 ng~~v~~~~~~~~~~~l~~~g~~v~l~v~p~ 89 (90)
T 1y7n_A 59 NGQSVVATPHEKIVHILSNAVGEIHMKTMPA 89 (90)
T ss_dssp TTEECTTSCHHHHHHHHHHCCEEEEEEEECC
T ss_pred CCEECCCCCHHHHHHHHHcCCCeEEEEEEEC
Confidence 9999988899999999998888888888753
No 98
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}
Probab=99.49 E-value=6e-13 Score=93.85 Aligned_cols=88 Identities=31% Similarity=0.448 Sum_probs=73.0
Q ss_pred CCCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEE
Q psy16403 19 SQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRV 98 (177)
Q Consensus 19 ~~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I 98 (177)
.....+|+++|.++. .+|||.+... . ...+++|..|.++|+|+++||+.||+|
T Consensus 5 ~~~~~~r~v~l~~~~--~g~G~~l~~~-------------~------------~~~gv~V~~V~~~spA~~aGl~~GD~I 57 (128)
T 2kjd_A 5 FTMLRPRLCTMKKGP--SGYGFNLHSD-------------K------------SKPGQFIRSVDPDSPAEASGLRAQDRI 57 (128)
T ss_dssp TTTCCCEEEEEECCS--SSCCEEEEEC-------------S------------SSCSEEEEEECTTSHHHHHTCCTTCEE
T ss_pred CCCCCcEEEEEecCC--CcccEEEEec-------------C------------CCCCEEEEEeCCCChHHHcCCCCCCEE
Confidence 346789999999998 8999998761 1 123689999999999999999999999
Q ss_pred EEECCEEcCCCCHHHHHHHHHcCCCe-EEEEEEeCC
Q psy16403 99 VAVNNQTIADLPYAEVVQLIQNSPAY-LHLLVVPKE 133 (177)
Q Consensus 99 ~~Ing~~v~~~~~~~~~~~l~~~~~~-v~l~v~~~~ 133 (177)
++|||.++.++++.++..+++..... +.+++.|.+
T Consensus 58 ~~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~g 93 (128)
T 2kjd_A 58 VEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRET 93 (128)
T ss_dssp EEETTEECTTCCHHHHHHHHHTTCSEEEEEEECHHH
T ss_pred EEECCEECCCCCHHHHHHHHHhCCCCEEEEEEEeCC
Confidence 99999999977799999999876544 557776644
No 99
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=99.48 E-value=5e-13 Score=92.57 Aligned_cols=87 Identities=32% Similarity=0.492 Sum_probs=74.2
Q ss_pred CCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEEEE
Q psy16403 22 LGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAV 101 (177)
Q Consensus 22 ~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~I 101 (177)
..|+++.+.+.. ...|||.+... . ...+++|..|.++|||+++||+.||+|++|
T Consensus 12 ldp~~~~l~~~~-~~~~G~~l~~~-------------~------------~~~g~~V~~V~~~spA~~aGL~~GD~I~~i 65 (114)
T 2edz_A 12 FNPRECKLSKQE-GQNYGFFLRIE-------------K------------DTDGHLIRVIEEGSPAEKAGLLDGDRVLRI 65 (114)
T ss_dssp CCCEEEEEECCT-TCCCSCEEECC-------------T------------TCCSCEEECCCTTCTTGGGTCCTTCEEEEE
T ss_pred CCCEEEEEeCCC-CCcccEEEEEe-------------c------------CCCCeEEEEeCCCChHHHcCCCCCCEEEEE
Confidence 478999999886 57899988751 1 124689999999999999999999999999
Q ss_pred CCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 102 NNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 102 ng~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
||+++.+.++.++...++..+..+.|++.|.+.
T Consensus 66 ng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~ 98 (114)
T 2edz_A 66 NGVFVDKEEHAQVVELVRKSGNSVTLLVLDGDS 98 (114)
T ss_dssp SSSBCSSSCHHHHHHHHHHTCSEEEEEEECHHH
T ss_pred CCEECCCCCHHHHHHHHHcCCCEEEEEEEECCc
Confidence 999999888999999998888889999988554
No 100
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=99.48 E-value=7.9e-13 Score=88.75 Aligned_cols=92 Identities=22% Similarity=0.333 Sum_probs=72.0
Q ss_pred ceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEEEECC
Q psy16403 24 PRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNN 103 (177)
Q Consensus 24 ~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing 103 (177)
..++.+.+.. .+|||++... .....+ .....+++|..|.++|||+++||++||+|++|||
T Consensus 4 ~~~v~~~~~~--~glG~~i~~g-------------~~~~~~-----~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing 63 (97)
T 2w4f_A 4 ELTLTILRQT--GGLGISIAGG-------------KGSTPY-----KGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNG 63 (97)
T ss_dssp EEEEEEECBT--TBSSEEEEEC-------------TTSCCS-----BTTBCSEEEEEECTTSHHHHHTCCTTCEEEEETT
T ss_pred EEEEEEEeCC--CceeEEEECC-------------ccCCcc-----cCCCCCEEEEEECCCChHHHcCCCCCCEEEEECC
Confidence 4567888776 8999999862 111000 0122578999999999999999999999999999
Q ss_pred EEcCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Q psy16403 104 QTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135 (177)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~ 135 (177)
+++.+.++.++...++..+..+.+++.|++..
T Consensus 64 ~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g~~ 95 (97)
T 2w4f_A 64 VALQGAEHHEAVEALRGAGTAVQMRVWRERET 95 (97)
T ss_dssp EECTTCCHHHHHHHHHTSCSEEEEEEECCSSC
T ss_pred EECCCcCHHHHHHHHhCCCCeEEEEEEeCCcc
Confidence 99998888778877877888899999886543
No 101
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.48 E-value=3e-13 Score=92.60 Aligned_cols=92 Identities=16% Similarity=0.275 Sum_probs=74.0
Q ss_pred CceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEEEE
Q psy16403 23 GPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAV 101 (177)
Q Consensus 23 ~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~I 101 (177)
..+.|.|.|.. .+|||++.+... +... .....+++|..|.++|||+++| |+.||+|++|
T Consensus 9 ~~~~v~l~k~~--~glG~~i~~~~~----------g~~~--------~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~v 68 (107)
T 1wf8_A 9 ELFPVELEKDE--DGLGISIIGMGV----------GADA--------GLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEV 68 (107)
T ss_dssp EEEEEEEECBT--TBSCEEEEEEEE----------SCCT--------TCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEE
T ss_pred eEEEEEEEECC--CcccEEEEecCC----------CCCC--------CCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEE
Confidence 45778888887 899999986100 0110 0012468999999999999999 9999999999
Q ss_pred CCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 102 NNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 102 ng~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
||+++.++++.++..+++..+..+.|++.|...
T Consensus 69 ng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~ 101 (107)
T 1wf8_A 69 DGISLVGVTQNFAATVLRNTKGNVRFVIGREKP 101 (107)
T ss_dssp TTEECBSCCHHHHHHHHHHCCSEEEEEEEEECC
T ss_pred CCEECCCCCHHHHHHHHhcCCCeEEEEEEeCCC
Confidence 999999889999999998888899999988543
No 102
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.48 E-value=2.9e-13 Score=92.12 Aligned_cols=86 Identities=15% Similarity=0.166 Sum_probs=70.6
Q ss_pred CCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEEEE
Q psy16403 22 LGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAV 101 (177)
Q Consensus 22 ~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~I 101 (177)
....+|.|. ++ .+|||++.+. .. ...+++|..|.++|||+++||+.||+|++|
T Consensus 4 g~~~~v~l~-~~--~~~G~~l~gg-------------~~-----------~~~~v~V~~V~~~spA~~aGL~~GD~I~~i 56 (103)
T 1wf7_A 4 GSSGSVSLV-GP--APWGFRLQGG-------------KD-----------FNMPLTISSLKDGGKASQAHVRIGDVVLSI 56 (103)
T ss_dssp CCCEEEEEE-SS--SCCSCCEEEE-------------TT-----------TTEEEEECCCCTTCHHHHTTCCTTCBEEEE
T ss_pred CCEEEEEEe-CC--CccCEEEecc-------------cc-----------CCCCEEEEEECCCCHHHHcCCCCCCEEEEE
Confidence 455778887 44 7899999862 11 123578999999999999999999999999
Q ss_pred CCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 102 NNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 102 ng~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
||+++.+.++.++...++..++.+.|++.|.+.
T Consensus 57 ng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g~ 89 (103)
T 1wf7_A 57 DGISAQGMTHLEAQNKIKACTGSLNMTLQRASA 89 (103)
T ss_dssp TTEECSSCCHHHHHHHHHHCSSEEEEEECCCSC
T ss_pred CCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Confidence 999999888899999888888889999887554
No 103
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=99.48 E-value=6e-13 Score=92.82 Aligned_cols=90 Identities=19% Similarity=0.296 Sum_probs=71.8
Q ss_pred CCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEE
Q psy16403 21 QLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVV 99 (177)
Q Consensus 21 ~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~ 99 (177)
....+.+.|.|.. ..+|||++.+. .. ....+++|..|.+++||+++| |++||+|+
T Consensus 13 ~~~~~~v~l~~~~-~~~lG~~i~g~-------------~~----------~~~~gv~V~~V~~~spA~~aG~L~~GD~Il 68 (119)
T 1x6d_A 13 LDGIHVTILHKEE-GAGLGFSLAGG-------------AD----------LENKVITVHRVFPNGLASQEGTIQKGNEVL 68 (119)
T ss_dssp CTTEEEEEEECCT-TSCCSEEEECC-------------SS----------SSCSSCEEEEECSSSHHHHHTSSCTTCBCC
T ss_pred CCCeEEEEEEeCC-CCccCEEEeCC-------------CC----------CCCCCEEEEEECCCChHHHcCCCCCCCEEE
Confidence 4556778888865 58999999862 11 112468999999999999999 99999999
Q ss_pred EECCEEcCCCCHHHHHHHHHcCCCeE-EEEEEeCCc
Q psy16403 100 AVNNQTIADLPYAEVVQLIQNSPAYL-HLLVVPKEN 134 (177)
Q Consensus 100 ~Ing~~v~~~~~~~~~~~l~~~~~~v-~l~v~~~~~ 134 (177)
+|||+++.++++.++..+++..+..+ .+++.|++.
T Consensus 69 ~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~~~ 104 (119)
T 1x6d_A 69 SINGKSLKGTTHHDALAILRQAREPRQAVIVTRKLT 104 (119)
T ss_dssp EETTEECSSCCHHHHHHHHHHTTSSSEEEEEEECCC
T ss_pred EECCEECCCCCHHHHHHHHHhCCCCeEEEEEEcCCC
Confidence 99999999999999999998776654 466666544
No 104
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}
Probab=99.47 E-value=5.9e-13 Score=91.17 Aligned_cols=62 Identities=24% Similarity=0.450 Sum_probs=57.3
Q ss_pred CceEEEeeCCCCHHhHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Q psy16403 74 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135 (177)
Q Consensus 74 ~~~~V~~V~~gs~A~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~ 135 (177)
.+++|..|.++|||+++| |+.||+|++|||.++.+.++.++...++..+..+.|++.|++..
T Consensus 32 ~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~~ 94 (106)
T 4amh_A 32 NSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDFVYLKVAKPGSG 94 (106)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHSCCSEEEEEEECCSSS
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCCC
Confidence 478999999999999999 99999999999999998899999999998888999999987643
No 105
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.47 E-value=2.8e-13 Score=91.76 Aligned_cols=84 Identities=26% Similarity=0.406 Sum_probs=71.4
Q ss_pred CCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEE
Q psy16403 20 QQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVV 99 (177)
Q Consensus 20 ~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~ 99 (177)
.+.....+.+.+.. .+|||.+... .+++|..|.++|||+++||+.||+|+
T Consensus 12 ~~~~~~~v~l~~~~--~g~G~~~~~~----------------------------~~~~V~~V~~~spA~~aGL~~GD~I~ 61 (100)
T 1whd_A 12 ENGEKLQITIRRGK--DGFGFTICCD----------------------------SPVRVQAVDSGGPAERAGLQQLDTVL 61 (100)
T ss_dssp CCCEEEEEEEECCS--SSSSCBCCCS----------------------------SSCBCCBCCTTSHHHHHTCCSSCEEE
T ss_pred cccceEEEEEECCC--CeeeEEEeCC----------------------------CCEEEEEECCCCHHHHcCCCCCCEEE
Confidence 34556778888877 8899877641 35789999999999999999999999
Q ss_pred EECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy16403 100 AVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 133 (177)
Q Consensus 100 ~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~ 133 (177)
+|||+++.++++.++..+++..++.+.|++.|..
T Consensus 62 ~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~ 95 (100)
T 1whd_A 62 QLNERPVEHWKCVELAHEIRSCPSEIILLVWRVS 95 (100)
T ss_dssp EETTEECTTCCHHHHHHHHHHCSSEEEEEEEECC
T ss_pred EECCEECCCCCHHHHHHHHHcCCCeEEEEEEECC
Confidence 9999999988899999999887778889888754
No 106
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=6.7e-14 Score=94.24 Aligned_cols=85 Identities=20% Similarity=0.371 Sum_probs=73.3
Q ss_pred CCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEE
Q psy16403 20 QQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVV 99 (177)
Q Consensus 20 ~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~ 99 (177)
..+.+++++|.|.....+|||.+.+. .+++|..|.++|||+ +||+.||+|+
T Consensus 5 ~~~~~~~v~l~~~~~~~~~G~~l~~~----------------------------~~~~V~~V~~~spA~-agL~~GD~Il 55 (96)
T 2edv_A 5 SSGVRHTVKIDKDTLLQDYGFHISES----------------------------LPLTVVAVTAGGSAH-GKLFPGDQIL 55 (96)
T ss_dssp SSCEEEEEEECCCSSSCSCSBCCCSS----------------------------SSCBCCCBCSSSSST-TTSCTTCBEE
T ss_pred CCCccEEEEEEECCCCCcccEEEecC----------------------------CCeEEEEECCCCchh-hCCCCCCEEE
Confidence 35667999999987445899987641 367899999999995 9999999999
Q ss_pred EECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy16403 100 AVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 133 (177)
Q Consensus 100 ~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~ 133 (177)
+|||+++.++++.++...++..++.+.|++.|.+
T Consensus 56 ~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~ 89 (96)
T 2edv_A 56 QMNNEPAEDLSWERAVDILREAEDSLSITVVRCT 89 (96)
T ss_dssp EESSCBSTTCCHHHHHHHHHHCSSCEEEEEEECC
T ss_pred EECCEECCCCCHHHHHHHHHcCCCeEEEEEEECC
Confidence 9999999988999999999888889999999876
No 107
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A
Probab=99.47 E-value=6.2e-13 Score=100.27 Aligned_cols=89 Identities=24% Similarity=0.287 Sum_probs=75.3
Q ss_pred CCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEE
Q psy16403 20 QQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVV 99 (177)
Q Consensus 20 ~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~ 99 (177)
.....+.|.|.|.+ ..+|||++.+. .. ...+++|..|.++|||+++||+.||+|+
T Consensus 81 ~~~~~~~v~l~k~~-~~~lG~~i~~~-------------~~-----------~~~~~~V~~V~~gspA~~aGL~~GD~Il 135 (192)
T 3k1r_A 81 RSRKLKEVRLDRLH-PEGLGLSVRGG-------------LE-----------FGCGLFISHLIKGGQADSVGLQVGDEIV 135 (192)
T ss_dssp CCSSCEEEEEETTS-TTCCCEEEEEE-------------GG-----------GTEEEEEEEECTTSHHHHTTCCTTEEEE
T ss_pred CCCceEEEEEEeCC-CCceeEEEEcc-------------cc-----------cCCCEEEEEECCCChHHHcCCCCCCEEE
Confidence 34567899999985 47999999762 11 1136899999999999999999999999
Q ss_pred EECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 100 AVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 100 ~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
+|||.++.++++.++...++. +..+.|++.|.+.
T Consensus 136 ~vng~~v~~~~~~~~~~~l~~-~~~v~l~v~r~g~ 169 (192)
T 3k1r_A 136 RINGYSISSCTHEEVINLIRT-EKTVSIKVRHIGL 169 (192)
T ss_dssp EETTEECTTCCHHHHHHHHTS-SSEEEEEEEECCE
T ss_pred EECCEECCCCCHHHHHHHHcC-CCeEEEEEEECCc
Confidence 999999998889999999987 8889999988654
No 108
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=99.47 E-value=2.9e-13 Score=106.74 Aligned_cols=88 Identities=20% Similarity=0.297 Sum_probs=75.7
Q ss_pred CCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhH-cCCCCCCEEEE
Q psy16403 22 LGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAA-AGLVPGDRVVA 100 (177)
Q Consensus 22 ~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~-aGl~~GD~I~~ 100 (177)
..+|+|+|.|.. ..+|||+|.+. .+ ...+++|..|.++|||++ +||+.||+|++
T Consensus 76 ~~~r~V~L~k~~-~~glGf~I~gg-------------~d-----------~~~gi~V~~V~~gspA~~~aGL~~GD~Il~ 130 (263)
T 1z87_A 76 LQRRRVTVRKAD-AGGLGISIKGG-------------RE-----------NKMPILISKIFKGLAADQTEALFVGDAILS 130 (263)
T ss_dssp CSSEEECCCTTT-TCCCCCEEEEE-------------TT-----------TTEEEEEEECCTTSHHHHCTTCCSSCEEEE
T ss_pred CccEEEEEEeCC-CCCEeEEEeec-------------cC-----------CCCCEEEEEECCCCHHHHhCCCCCCCEEEE
Confidence 357999999985 58999999862 11 123689999999999999 68999999999
Q ss_pred ECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 101 VNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 101 Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
|||+++.++++.+++.+++..++.+.|+|.|...
T Consensus 131 VNG~~v~~~t~~e~v~~l~~~g~~V~L~V~R~~~ 164 (263)
T 1z87_A 131 VNGEDLSSATHDEAVQALKKTGKEVVLEVKYMKE 164 (263)
T ss_dssp ESSCBCTTSCHHHHHHHHHHCCSCCCEEEECCSS
T ss_pred ECCEECCCcCHHHHHHHHhcCCCeEEEEEEeCcc
Confidence 9999999999999999999988889999988544
No 109
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.46 E-value=5.4e-13 Score=93.58 Aligned_cols=94 Identities=24% Similarity=0.388 Sum_probs=75.0
Q ss_pred CCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEE
Q psy16403 21 QLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVV 99 (177)
Q Consensus 21 ~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~ 99 (177)
...+++|+|.|+. ..+|||++.... .. ......+++|..|.+++||+++| |++||+|+
T Consensus 13 ~~~~~~v~l~k~~-~~glG~~l~~~~-------------~~-------~~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~ 71 (122)
T 1v5q_A 13 HTETTEVVLTADP-VTGFGIQLQGSV-------------FA-------TETLSSPPLISYIEADSPAERCGVLQIGDRVM 71 (122)
T ss_dssp CEEEEEEEECCCS-SSSSCEEEECCS-------------CC-------SSSCSSCCEEEEECTTSHHHHSCCCCTTCCEE
T ss_pred cceeEEEEEEeCC-CCccCEEEeccc-------------cc-------CCcCCCCcEEEEECCCChHHHcCCCCCCCEEE
Confidence 3467889998886 589999998620 00 00112358999999999999999 99999999
Q ss_pred EECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCcc
Q psy16403 100 AVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKEND 135 (177)
Q Consensus 100 ~Ing~~v~~~~~~~~~~~l~~~--~~~v~l~v~~~~~~ 135 (177)
+|||+++.+++++++.++++.. +..+.|++.|+...
T Consensus 72 ~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~ 109 (122)
T 1v5q_A 72 AINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAE 109 (122)
T ss_dssp EETTEESSSSCHHHHHHHHHHHTTTTCEEEEEEEECCC
T ss_pred EECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEECCcc
Confidence 9999999977899999999875 67899999886543
No 110
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Probab=99.46 E-value=1.1e-12 Score=89.88 Aligned_cols=94 Identities=19% Similarity=0.386 Sum_probs=73.2
Q ss_pred CCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEEE
Q psy16403 22 LGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVA 100 (177)
Q Consensus 22 ~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~ 100 (177)
...+.+.|.|.....+|||++... ..... .....+++|..|.++|||+++| |++||+|++
T Consensus 11 ~~~~~v~l~r~~~~~~lG~~~~~~-------------~~~~~------~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~ 71 (108)
T 2jre_A 11 FSLYSVELFREKDTSSLGISISGM-------------RDQST------TGEATGIYVKSLIPGSAAALDGRIEPNDKILR 71 (108)
T ss_dssp CEEEEEEEECCSTTSCCSEEEECC-------------CCCSC------SSCCCCCEEEEECTTSHHHHHSSCCSSEEEEE
T ss_pred cEEEEEEEEecCCCCCcCEEEEcc-------------cCCCC------CCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEE
Confidence 456778886433358999999862 11000 0122478999999999999999 999999999
Q ss_pred ECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 101 VNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 101 Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
|||+++.++++.++..+++..+..+.|++.|.+.
T Consensus 72 vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~ 105 (108)
T 2jre_A 72 VDDVNVQGMAQSDVVEVLRNAGNPVRLLLIRRLP 105 (108)
T ss_dssp ETTEECTTSCHHHHHHHHHHHCSEEEEEEEECCC
T ss_pred ECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Confidence 9999999888999999998777889999988654
No 111
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=99.46 E-value=7.3e-13 Score=98.22 Aligned_cols=89 Identities=15% Similarity=0.254 Sum_probs=71.8
Q ss_pred ceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEEEEC
Q psy16403 24 PRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVN 102 (177)
Q Consensus 24 ~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~In 102 (177)
..+|.|.|+. .+|||+|.+... +... .....+++|..|.++|||+++| |+.||+|++||
T Consensus 81 ~~~v~l~k~~--~glG~~i~g~~~-----------g~~~-------~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~VN 140 (170)
T 3egg_C 81 LFPVELEKDS--EGLGISIIGMGA-----------GADM-------GLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVD 140 (170)
T ss_dssp EEEEEEECBT--TBSSEEEEEECS-----------SSSC-------CSSSBEEEEEEECTTSHHHHHCCCCTTCEEEEET
T ss_pred EEEEEEEeCC--CeEeEEEEeccc-----------CCcc-------ccCCCCEEEEEECCCChHHHCCCCCCCCEEEEEC
Confidence 3567888888 799999876100 0000 0112468999999999999999 99999999999
Q ss_pred CEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy16403 103 NQTIADLPYAEVVQLIQNSPAYLHLLVVPK 132 (177)
Q Consensus 103 g~~v~~~~~~~~~~~l~~~~~~v~l~v~~~ 132 (177)
|+++.++++.+++.+++..+..+.|+|.|.
T Consensus 141 G~~v~~~~~~~~~~~l~~~g~~v~L~V~R~ 170 (170)
T 3egg_C 141 GTSLVGVTQSFAASVLRNTKGRVRFMIGRE 170 (170)
T ss_dssp TEECTTBCHHHHHHHHHHCCSEEEEEEEEC
T ss_pred CEECCCCCHHHHHHHHHcCCCEEEEEEEeC
Confidence 999999999999999999888999998873
No 112
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.46 E-value=6e-14 Score=97.10 Aligned_cols=83 Identities=25% Similarity=0.390 Sum_probs=71.5
Q ss_pred CCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEE
Q psy16403 20 QQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVV 99 (177)
Q Consensus 20 ~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~ 99 (177)
.|..+|+|.|.|+. .+|||.+... .+++|..|.++++|+++||+.||+|+
T Consensus 12 ~~~~~r~v~l~~~~--~~~G~~l~~~----------------------------~~v~V~~V~~~spA~~aGL~~GD~Il 61 (111)
T 1vae_A 12 RWSPPRGIHFTVEE--GDLGFTLRGN----------------------------TPVQVHFLDPHCSASLAGAKEGDYIV 61 (111)
T ss_dssp EECCCCCCCEECCS--SCCSCCEESS----------------------------SSCEECCCCTTSSHHHHHCCTTCEEE
T ss_pred CCCCCeEEEEEcCC--CcccEEEeCC----------------------------CCEEEEEECCCCHHHHcCCCCCCEEE
Confidence 46778999999987 8999988641 25789999999999999999999999
Q ss_pred EECCEEcCCCCHHHHHHHHHcCCC-eEEEEEEeC
Q psy16403 100 AVNNQTIADLPYAEVVQLIQNSPA-YLHLLVVPK 132 (177)
Q Consensus 100 ~Ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~~~ 132 (177)
+|||.++.+++++++..+++..++ .+.|++.+.
T Consensus 62 ~InG~~v~~~~~~d~~~~i~~~~~~~v~l~V~~~ 95 (111)
T 1vae_A 62 SIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVSL 95 (111)
T ss_dssp EETTEECSSCCHHHHHHHHHHTTTSEECEEEECE
T ss_pred EECCEECCCCCHHHHHHHHHhCCCceEEEEEEec
Confidence 999999998899999999987655 488888764
No 113
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.46 E-value=1.4e-13 Score=93.45 Aligned_cols=88 Identities=20% Similarity=0.412 Sum_probs=72.5
Q ss_pred CCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEEE
Q psy16403 22 LGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVA 100 (177)
Q Consensus 22 ~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~ 100 (177)
...+++.+.+.. .+|||++... .+ ...+++|..|.++|||+++| |+.||+|++
T Consensus 10 ~~~~~v~l~~~~--~g~G~~~~~~-------------~~-----------~~~~~~V~~V~~~spA~~aG~l~~GD~I~~ 63 (103)
T 1wfv_A 10 FDYFTVDMEKGA--KGFGFSIRGG-------------RE-----------YKMDLYVLRLAEDGPAIRNGRMRVGDQIIE 63 (103)
T ss_dssp SCCEECCEECCT--TSSSBCCEEE-------------TT-----------TTEEEECCCBCTTSHHHHHCSSCTTCEEEE
T ss_pred ceEEEEEEecCC--CcCCEEEecc-------------cc-----------CCCCEEEEEECCCChHHHcCCCCCCCEEEE
Confidence 355778888877 7899988752 11 11268999999999999999 999999999
Q ss_pred ECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Q psy16403 101 VNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135 (177)
Q Consensus 101 Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~ 135 (177)
|||+++.++++.++...++..+..+.|++.|.+..
T Consensus 64 vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~ 98 (103)
T 1wfv_A 64 INGESTRDMTHARAIELIKSGGRRVRLLLKRGTGS 98 (103)
T ss_dssp ETTEECSSCCHHHHHHHHHHHCSEECEEEECTTCS
T ss_pred ECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCCC
Confidence 99999998889999999987788899999886543
No 114
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.45 E-value=9.9e-13 Score=92.95 Aligned_cols=94 Identities=23% Similarity=0.384 Sum_probs=75.0
Q ss_pred CCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEE
Q psy16403 21 QLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVV 99 (177)
Q Consensus 21 ~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~ 99 (177)
....++|.|.+.. ..+|||++.... .... .....+++|..|.++|||+++| |+.||+|+
T Consensus 13 ~~~~~~v~l~~~~-~~~lG~~i~~~~-------------~~~~------~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~ 72 (129)
T 2dmz_A 13 LFETYNVELVRKD-GQSLGIRIVGYV-------------GTSH------TGEASGIYVKSVIPGSAAYHNGHIQVNDKIV 72 (129)
T ss_dssp CEEEEEEEECCCT-TCCCCEEEEEEC-------------CCSS------SCCCCEEEEEEECTTSHHHHHTCCCSSCBEE
T ss_pred CCcEEEEEEEeCC-CCCcCEEEEeec-------------CCcc------cCCCCCEEEEEeCCCCHHHHcCCCCCCCEEE
Confidence 3456788886654 489999998621 1000 0022478999999999999999 99999999
Q ss_pred EECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 100 AVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 100 ~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
+|||+++.++++.++..+++..+..+.|++.|.+.
T Consensus 73 ~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~ 107 (129)
T 2dmz_A 73 AVDGVNIQGFANHDVVEVLRNAGQVVHLTLVRRKT 107 (129)
T ss_dssp EETTBCCTTCCHHHHHHHHHHCCSSEEEEEEEESS
T ss_pred EECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Confidence 99999999888999999998878889999988654
No 115
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.45 E-value=2.9e-13 Score=90.62 Aligned_cols=61 Identities=31% Similarity=0.400 Sum_probs=55.2
Q ss_pred CceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 74 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 74 ~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
.+++|..|.++|||+++||++||+|++|||.++.+.++.++..+++..+..+.+++.|++.
T Consensus 30 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~g~ 90 (94)
T 1vb7_A 30 TPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLDRSSG 90 (94)
T ss_dssp EEEECCCBCTTSSHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEEEECCCC
T ss_pred CCeEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEECCc
Confidence 3679999999999999999999999999999999888899999998877889999988654
No 116
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Probab=99.45 E-value=7.8e-13 Score=88.71 Aligned_cols=85 Identities=20% Similarity=0.428 Sum_probs=64.9
Q ss_pred CCCceEEEEecCCC-CCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEE
Q psy16403 21 QLGPRNLILRRSAA-LNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVV 99 (177)
Q Consensus 21 ~~~~r~v~l~r~~~-~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~ 99 (177)
...+|.|.|.|.+. ..+|||++... . .....+++|..|.++|||+++||+.||+|+
T Consensus 4 ~~~~~~v~i~k~~~~~~~~Gf~v~~~-------------~----------~~~~~g~~V~~V~~~spA~~aGL~~GD~Il 60 (94)
T 3kzd_A 4 GKVTHSIHIEKSDTAADTYGFSLSSV-------------E----------EDGIRRLYVNSVKETGLASKKGLKAGDEIL 60 (94)
T ss_dssp CCEEEEEEEEC------CCSEEEEEE-------------C----------SSSSCEEEEEEECTTSHHHHTTCCTTCEEE
T ss_pred ccceeEEEEEeCCCCcCCcCEEEEec-------------C----------CCCcCCeEEEEECCCCHHHHcCCCCCCEEE
Confidence 34578899999872 34899998762 0 111246899999999999999999999999
Q ss_pred EECCEEcCCCCHHHHHHHHHcCCCeEEEEEE
Q psy16403 100 AVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 130 (177)
Q Consensus 100 ~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~ 130 (177)
+|||+++.+.+++++..++++ ..+.+++.
T Consensus 61 ~vng~~v~~~~~~~l~~~l~~--~~l~ltV~ 89 (94)
T 3kzd_A 61 EINNRAADALNSSMLKDFLSQ--PSLGLLVR 89 (94)
T ss_dssp EETTEEGGGCCHHHHHHHHHS--SEEEEEEE
T ss_pred EECCEECCCCCHHHHHHHHhC--CeEEEEEE
Confidence 999999999999999999974 44556553
No 117
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Probab=99.45 E-value=1.8e-12 Score=89.18 Aligned_cols=90 Identities=29% Similarity=0.515 Sum_probs=72.3
Q ss_pred CceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEEEE
Q psy16403 23 GPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAV 101 (177)
Q Consensus 23 ~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~I 101 (177)
....+.+.++. .+|||++... .... ....+++|..|.++|||+++| |+.||+|++|
T Consensus 11 ~~~~~~l~~~~--~glG~~~~~~-------------~~~~--------~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~i 67 (111)
T 2koj_A 11 KRLNIQLKKGT--EGLGFSITSR-------------DVTI--------GGSAPIYVKNILPRGAAIQDGRLKAGDRLIEV 67 (111)
T ss_dssp EEEEEEEECBT--TBTCEEEEEC-------------SCSS--------SSSSCEEEEEECSSSHHHHHCSSCTTCEEEEE
T ss_pred cEEEEEEEECC--CccCEEEEec-------------cCCC--------CCCcCEEEEEECCCChHHHCCCCCCCCEEEEE
Confidence 34667777776 8999999862 1110 012468999999999999999 9999999999
Q ss_pred CCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCcc
Q psy16403 102 NNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKEND 135 (177)
Q Consensus 102 ng~~v~~~~~~~~~~~l~~~--~~~v~l~v~~~~~~ 135 (177)
||+++.+.++.++..+++.. +..+.|++.|.+..
T Consensus 68 ng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~ 103 (111)
T 2koj_A 68 NGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQEEA 103 (111)
T ss_dssp TTEECTTSCHHHHHHHHHHCCCSSEEEEEEEECCCC
T ss_pred CCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCCCC
Confidence 99999988899999999875 67899999886654
No 118
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=99.45 E-value=1.3e-12 Score=88.56 Aligned_cols=90 Identities=23% Similarity=0.316 Sum_probs=71.8
Q ss_pred CCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhH-cCCCCCCEE
Q psy16403 20 QQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAA-AGLVPGDRV 98 (177)
Q Consensus 20 ~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~-aGl~~GD~I 98 (177)
.+...|.+.+.|.. ..+|||++... +. .....+++|..|.++|||++ +||+.||+|
T Consensus 6 ~~~~~~~v~l~k~~-g~~lG~~i~~~-------------~~---------~~~~~~~~V~~V~~~spA~~~ggl~~GD~I 62 (101)
T 2yt7_A 6 SGDNCREVHLEKRR-GEGLGVALVES-------------GW---------GSLLPTAVIANLLHGGPAERSGALSIGDRL 62 (101)
T ss_dssp TTCCCEEEEEECCT-TCCCCEEEEEC-------------CC---------SSSSCCEEEEEECTTSTTGGGSSCCTTCEE
T ss_pred CCCceEEEEEEeCC-CCccCEEEEeC-------------CC---------CCCccCEEEEEECCCCHHHHcCCCCCCCEE
Confidence 34567889998876 47999999741 10 01123589999999999999 559999999
Q ss_pred EEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeC
Q psy16403 99 VAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPK 132 (177)
Q Consensus 99 ~~Ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~~~ 132 (177)
++|||+++.+.+++++..+++. .+..+.|++.|.
T Consensus 63 ~~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 98 (101)
T 2yt7_A 63 TAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVHC 98 (101)
T ss_dssp EEESSCBCTTSCHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred EEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeC
Confidence 9999999977799999999987 567888888763
No 119
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=99.45 E-value=1.1e-12 Score=90.83 Aligned_cols=83 Identities=20% Similarity=0.275 Sum_probs=69.0
Q ss_pred CCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEEEE
Q psy16403 22 LGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAV 101 (177)
Q Consensus 22 ~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~I 101 (177)
...++|.|.|+. .+|||+|..+ . .+.+|..|.+ +++.+||++||+|++|
T Consensus 11 ~~~~~V~L~Kg~--~G~GFsI~~~-------------~--------------~g~~V~~I~~--~~~~aGL~~GD~Il~V 59 (113)
T 3soe_A 11 GLLVTIPLIKGP--KGFGFAIADS-------------P--------------TGQKVKMILD--SQWCQGLQKGDIIKEI 59 (113)
T ss_dssp CEEEEEEEECBT--TBSSEEEEEE-------------T--------------TEEEEEEESC--GGGSTTCCTTCEEEEE
T ss_pred CCEEEEEEEECC--CcccEEEeCC-------------C--------------CCcEEEEecC--hHHhCCCCCCCEEEEE
Confidence 345889999998 8999999652 1 1356888877 5888999999999999
Q ss_pred CCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCcc
Q psy16403 102 NNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKEND 135 (177)
Q Consensus 102 ng~~v~~~~~~~~~~~l~~~--~~~v~l~v~~~~~~ 135 (177)
||.++.+++|++++++|+.. +..+.|+|.|.+..
T Consensus 60 NG~~v~~~~h~evv~~lk~~~~G~~v~L~V~R~g~~ 95 (113)
T 3soe_A 60 YHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGPP 95 (113)
T ss_dssp TTEECTTSCHHHHHHHHHHSCTTCEEEEEEEESSCC
T ss_pred CCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECCcc
Confidence 99999999999999999975 56899999986643
No 120
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=5.3e-13 Score=90.39 Aligned_cols=91 Identities=20% Similarity=0.233 Sum_probs=72.5
Q ss_pred CCCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHc-CCCCCCE
Q psy16403 19 SQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAA-GLVPGDR 97 (177)
Q Consensus 19 ~~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~a-Gl~~GD~ 97 (177)
+.+...+++.+.+.. ..+|||++.+. .. ...+++|..|.++|||+++ ||++||+
T Consensus 5 ~~~~~~~~~~v~~~~-~~~~G~~~~gg-------------~~-----------~~~~v~V~~V~~~spA~~agGL~~GD~ 59 (100)
T 2edp_A 5 SSGGSFQYVPVQLQG-GAPWGFTLKGG-------------LE-----------HCEPLTVSKIEDGGKAALSQKMRTGDE 59 (100)
T ss_dssp CCCCCCEEEEEECCS-CSCCCCCEEEE-------------GG-----------GTEEEEECCCCTTSHHHHHTSCCTTCE
T ss_pred CCCCCcEEEEEEECC-CCCcCEEEecc-------------CC-----------CCCCeEEEEECCCCHHHHcCCCCCCCE
Confidence 344566778887765 36899998762 11 1125789999999999999 8999999
Q ss_pred EEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Q psy16403 98 VVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135 (177)
Q Consensus 98 I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~ 135 (177)
|++|||+++.+. +.++...++..+..+.|++.|.+..
T Consensus 60 I~~ing~~v~~~-~~~~~~~~~~~~~~v~l~v~R~~~~ 96 (100)
T 2edp_A 60 LVNINGTPLYGS-RQEALILIKGSFRILKLIVRRRNSG 96 (100)
T ss_dssp EEEETTEECCSC-SHHHHHHHHTCCSSCEEEEEECCCS
T ss_pred EEEECCEEccch-HHHHHHHHHhCCCeEEEEEEeCCCC
Confidence 999999999975 7889999988788899999987643
No 121
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=99.44 E-value=1.5e-12 Score=88.96 Aligned_cols=93 Identities=23% Similarity=0.270 Sum_probs=72.3
Q ss_pred CCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEEEE
Q psy16403 22 LGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAV 101 (177)
Q Consensus 22 ~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~I 101 (177)
..+++|+|.|.+ ..+|||++.+. .....+ .....+++|..|.++|||+ +||++||+|++|
T Consensus 6 ~~~~~v~l~k~~-~~glG~~i~~~-------------~~~~~~-----~~~~~gv~V~~V~~~spA~-agl~~GD~I~~v 65 (107)
T 2h2b_A 6 WEQHTVTLHRAP-GFGFGIAISGG-------------RDNPHF-----QSGETSIVISDVLKGGPAE-GQLQENDRVAMV 65 (107)
T ss_dssp EEEEEEEEECBT-TTBTCEEEEEC-------------TTSCCT-----TTCCCCEEEEEECTTSTTB-TTBCTTCEEEEE
T ss_pred ceeEEEEEEeCC-CCccCEEEecC-------------cCCCcc-----cCCCCCEEEEEECCCCchh-hCCCCCCEEEEE
Confidence 356889999986 58999999862 111000 0112478999999999999 999999999999
Q ss_pred CCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 102 NNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 102 ng~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
||+++.+.++.+....++..+..+.+++.|.+.
T Consensus 66 ng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~ 98 (107)
T 2h2b_A 66 NGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKG 98 (107)
T ss_dssp TTEECTTCCHHHHHHHHHTCCSEEEEEEEEESC
T ss_pred CCEECCCccHHHHHHHhhCCCCEEEEEEEECCC
Confidence 999999887777777777678889999988654
No 122
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}
Probab=99.44 E-value=5.3e-13 Score=92.20 Aligned_cols=92 Identities=15% Similarity=0.253 Sum_probs=73.8
Q ss_pred ceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEEEEC
Q psy16403 24 PRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVN 102 (177)
Q Consensus 24 ~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~In 102 (177)
.++|.|.|.. .+|||++.+... +... .....+++|..|.++|||+++| |+.||+|++||
T Consensus 5 ~~~v~l~k~~--~glG~~l~~~~~----------~~~~--------~~~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vn 64 (113)
T 2g5m_B 5 LFPVELEKDS--EGLGISIIGMGA----------GADM--------GLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVD 64 (113)
T ss_dssp EEEEECCCCS--SCCCCEEEEEEC----------CCCS--------SSCCEEEEEEECCTTSHHHHHTCSCTTCBEEEET
T ss_pred EEEEEEEeCC--CCCCEEEEecCC----------CCcC--------CCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC
Confidence 4678888877 899999876210 0000 0112478999999999999999 99999999999
Q ss_pred CEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Q psy16403 103 NQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135 (177)
Q Consensus 103 g~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~ 135 (177)
|.++.++++.++...++..+..+.|++.|.+..
T Consensus 65 g~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~ 97 (113)
T 2g5m_B 65 GTSLVGVTQSFAASVLRNTKGRVRFMIGRERPG 97 (113)
T ss_dssp TEECSSCCHHHHHHHHHHSCSSCEEEEEECCCC
T ss_pred CEECCCCCHHHHHHHHhcCCCeEEEEEEeCCCC
Confidence 999998899999999998888899999986543
No 123
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.44 E-value=8.2e-13 Score=91.89 Aligned_cols=92 Identities=25% Similarity=0.355 Sum_probs=73.7
Q ss_pred CceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEEEEC
Q psy16403 23 GPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVN 102 (177)
Q Consensus 23 ~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~In 102 (177)
.++++.|.|.. ..+|||++.+ +.....+ .....+++|..|.++++|+ +||+.||+|++||
T Consensus 14 ~~~~v~l~k~~-~~glG~~i~g-------------g~~~~~~-----~~~~~gv~V~~V~~~spA~-~gL~~GD~I~~Vn 73 (117)
T 2csj_A 14 EQYTVTLQKDS-KRGFGIAVSG-------------GRDNPHF-----ENGETSIVISDVLPGGPAD-GLLQENDRVVMVN 73 (117)
T ss_dssp EEEEEEEECCS-SSTTCEEEEC-------------CSSCCCC-----SSCCCBCEEEEECTTSSHH-HHBCTTCEEEEES
T ss_pred eEEEEEEEECC-CCccCEEEeC-------------CcCCccc-----cCCCCCEEEEEECCCCccc-ccCCCCCEEEEEC
Confidence 46889999886 6899999986 2111100 0113468999999999997 8899999999999
Q ss_pred CEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 103 NQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 103 g~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
|+++.++++.++...++..+..+.|++.|...
T Consensus 74 g~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~ 105 (117)
T 2csj_A 74 GTPMEDVLHSFAVQQLRKSGKIAAIVVKRPRK 105 (117)
T ss_dssp SCBCBTCCHHHHHHHHHHSCSEEEEEEEEEEE
T ss_pred CEECCCcCHHHHHHHHhcCCCeEEEEEEECCc
Confidence 99999999999999999888899999988543
No 124
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.44 E-value=5.3e-13 Score=90.40 Aligned_cols=89 Identities=30% Similarity=0.407 Sum_probs=70.1
Q ss_pred CCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEE
Q psy16403 20 QQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVV 99 (177)
Q Consensus 20 ~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~ 99 (177)
.+...++++|.+.....+|||.+... .. ...+++|..|.+++||+++||+.||+|+
T Consensus 5 ~~~~~~~v~l~~~~~~~~lG~~~~~~-------------~~-----------~~~g~~V~~V~~~spA~~aGL~~GD~I~ 60 (101)
T 1uez_A 5 SSGEVRLVSLRRAKAHEGLGFSIRGG-------------SE-----------HGVGIYVSLVEPGSLAEKEGLRVGDQIL 60 (101)
T ss_dssp CSCCCEEECCCCCCTTTCSSEEEEEC-------------TT-----------TTCCEEEEEECTTSHHHHHTCCSSCCEE
T ss_pred CCCccEEEEEEECCCCCcccEEEeCC-------------CC-----------CCCCEEEEEECCCCHHHHcCCCCCCEEE
Confidence 45678999999865468999999762 11 1246899999999999999999999999
Q ss_pred EECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy16403 100 AVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 133 (177)
Q Consensus 100 ~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~ 133 (177)
+|||+++.+.++.+++..++ .+..+.|++.|.+
T Consensus 61 ~ing~~v~~~~~~~~~~~~~-~~~~v~l~v~R~g 93 (101)
T 1uez_A 61 RVNDKSLARVTHAEAVKALK-GSKKLVLSVYSAG 93 (101)
T ss_dssp EETTEECSSCCHHHHHHHSS-SSSSCCEEECCCC
T ss_pred EECCEECCCcCHHHHHHhhc-CCCeEEEEEEECC
Confidence 99999999888766666554 3456788887654
No 125
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Probab=99.43 E-value=3.7e-13 Score=95.15 Aligned_cols=60 Identities=25% Similarity=0.412 Sum_probs=55.2
Q ss_pred ceEEEeeCCCCHHhHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcC-------CCeEEEEEEeCCc
Q psy16403 75 TIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNS-------PAYLHLLVVPKEN 134 (177)
Q Consensus 75 ~~~V~~V~~gs~A~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~-------~~~v~l~v~~~~~ 134 (177)
+++|..|.++|||+++| |+.||+|++|||+++.+++|.+++.+|+.. +..+.|+|.|...
T Consensus 56 gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~g~~~~~v~l~v~R~~~ 123 (127)
T 1wg6_A 56 GIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSG 123 (127)
T ss_dssp EEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHHHHHTCEEEEEEEECSC
T ss_pred CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhccccCCCCEEEEEEEeCCC
Confidence 68999999999999999 999999999999999999999999999865 6889999988654
No 126
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=99.43 E-value=4e-12 Score=84.38 Aligned_cols=82 Identities=28% Similarity=0.469 Sum_probs=67.4
Q ss_pred CceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEEEE
Q psy16403 23 GPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAV 101 (177)
Q Consensus 23 ~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~I 101 (177)
++.++.+.+......|||.+.. +++|..|.++|+|+++| |+.||+|++|
T Consensus 2 ~~~~v~~~~~~~~~~~g~~~~~------------------------------gv~V~~v~~~s~A~~aG~l~~GD~I~~i 51 (92)
T 3cyy_A 2 KPTKVTLVKSAKNEEYGLRLAS------------------------------HIFVKEISQDSLAARDGNIQEGDVVLKI 51 (92)
T ss_dssp CCEEEEEECSSTTSCCCEEEEE------------------------------EEEEEEECTTCHHHHSCCCCTTCEEEEE
T ss_pred CcEEEEEEeCCCCCCCCEEEeC------------------------------CEEEEEECCCChHHhcCCCCCCCEEEEE
Confidence 4566777766545678887642 57999999999999999 9999999999
Q ss_pred CCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 102 NNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 102 ng~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
||.++.++++.++..+++..+..+.+++.|.+.
T Consensus 52 ng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~g~ 84 (92)
T 3cyy_A 52 NGTVTENMSLTDAKTLIERSKGKLKMVVQRDER 84 (92)
T ss_dssp TTEECTTCCHHHHHHHHHTTTTEEEEEEEC---
T ss_pred CCEECCCCCHHHHHHHHHcCCCcEEEEEEeCCc
Confidence 999999999999999998877788888887554
No 127
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=99.42 E-value=3.5e-12 Score=85.69 Aligned_cols=84 Identities=18% Similarity=0.195 Sum_probs=69.8
Q ss_pred CCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEEE
Q psy16403 22 LGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVA 100 (177)
Q Consensus 22 ~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~ 100 (177)
....++.|.+.. ..++||.+... ..+++|..|.++|||+++| |+.||+|++
T Consensus 7 ~~~~~v~l~~~~-~~glG~~~~~~---------------------------~~gv~V~~V~~~spA~~aG~L~~GD~I~~ 58 (96)
T 2qkv_A 7 LEKFNVDLMKKA-GKELGLSLSPN---------------------------EIGCTIADLIQGQYPEIDSKLQRGDIITK 58 (96)
T ss_dssp CCCEEEEEECBT-TBCCCEEEEEC---------------------------SSSEEEEEECTTSCHHHHHHCCTTCEEEE
T ss_pred CceEEEEEEeCC-CCCccEEEEeC---------------------------CCcEEEEEeCCCChHHhcCCCCCCCEEEE
Confidence 345678887654 47899887641 1368999999999999999 999999999
Q ss_pred ECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy16403 101 VNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 133 (177)
Q Consensus 101 Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~ 133 (177)
|||+++.+.++.++...++..++.+.|++.|..
T Consensus 59 Ing~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~ 91 (96)
T 2qkv_A 59 FNGDALEGLPFQVSYALFKGANGKVSMEVTRPK 91 (96)
T ss_dssp ETTEECTTCCHHHHHHHHHTCSSEEEEEEECCC
T ss_pred ECCEECCCCCHHHHHHHHhcCCCcEEEEEEeCC
Confidence 999999988899999999888888999988753
No 128
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Probab=99.42 E-value=2.5e-12 Score=91.35 Aligned_cols=60 Identities=30% Similarity=0.426 Sum_probs=54.8
Q ss_pred CceEEEeeCCCCHHhHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCC--CeEEEEEEeCC
Q psy16403 74 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSP--AYLHLLVVPKE 133 (177)
Q Consensus 74 ~~~~V~~V~~gs~A~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~--~~v~l~v~~~~ 133 (177)
.+++|..|.++++|+++| |++||+|++|||+++.+++++++..+++... ..+.|++.|++
T Consensus 65 ~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g 127 (131)
T 1wfg_A 65 LCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSG 127 (131)
T ss_dssp EEEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEEEEEEC
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEcCC
Confidence 368999999999999999 9999999999999999999999999998764 78999998854
No 129
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}
Probab=99.41 E-value=5.2e-12 Score=88.46 Aligned_cols=88 Identities=28% Similarity=0.516 Sum_probs=69.9
Q ss_pred CceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEEEE
Q psy16403 23 GPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAV 101 (177)
Q Consensus 23 ~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~I 101 (177)
....+.+.++. .+|||++... .... ....+++|..|.++|||+++| |++||+|++|
T Consensus 30 ~~~~v~l~~~~--~~lG~~l~~~-------------~~~~--------~g~~gv~V~~V~~gspA~~aG~L~~GD~Il~I 86 (121)
T 2kom_A 30 KRLNIQLKKGT--EGLGFSITSR-------------DVTI--------GGSAPIYVKNILPRGAAIQDGRLKAGDRLIEV 86 (121)
T ss_dssp EEEEEEEECCT--TCCCEEEECC-------------CCSS--------SSSCCEEEEEECTTSHHHHHTCCCSSSEEEEE
T ss_pred eEEEEEEEcCC--CcEeEEEEec-------------cCCc--------CCCCCEEEEEECCCChHHHcCCCCCCCEEEEE
Confidence 34556677766 8999999862 1110 012468999999999999999 9999999999
Q ss_pred CCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCC
Q psy16403 102 NNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKE 133 (177)
Q Consensus 102 ng~~v~~~~~~~~~~~l~~~--~~~v~l~v~~~~ 133 (177)
||+++.++++.++..+++.. +..+.|++.|.+
T Consensus 87 ng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g 120 (121)
T 2kom_A 87 NGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQE 120 (121)
T ss_dssp TTEECTTSCHHHHHHHHHHCCSSCEEEEEEEECC
T ss_pred CCEEcCCCCHHHHHHHHhcCCCCCEEEEEEEeCC
Confidence 99999988899999999874 678899988754
No 130
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=99.41 E-value=3.4e-12 Score=85.38 Aligned_cols=89 Identities=21% Similarity=0.399 Sum_probs=68.3
Q ss_pred eEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEEEECCE
Q psy16403 25 RNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQ 104 (177)
Q Consensus 25 r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~ 104 (177)
.++++.++. +|||++.+. ....+. . ......+++|..|.++|||++ ||++||+|++|||+
T Consensus 5 ~~v~l~~~~---~lG~~i~gg-------------~~~~~~--p-~~~~~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~ 64 (95)
T 1mfg_A 5 IRVRVEKDP---ELGFSISGG-------------VGGRGN--P-FRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGY 64 (95)
T ss_dssp EEEEEECSS---SCSEEEEEC-------------BTSCCC--S-SSTTCCCEEEEEECTTSTTTT-TCCTTCEEEEETTE
T ss_pred EEEEECCCC---CCCEEEeCC-------------cCccCC--c-cccCCCCEEEEEECCCCchhh-CCCCCCEEEEECCE
Confidence 456666544 799999862 110000 0 011235799999999999999 99999999999999
Q ss_pred EcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy16403 105 TIADLPYAEVVQLIQNSPAYLHLLVVPKE 133 (177)
Q Consensus 105 ~v~~~~~~~~~~~l~~~~~~v~l~v~~~~ 133 (177)
++.+.++.++...++..+..+.|++.|+.
T Consensus 65 ~v~~~~~~~~~~~~~~~~~~v~l~v~R~~ 93 (95)
T 1mfg_A 65 SFINIEHGQAVSLLKTFQNTVELIIVREV 93 (95)
T ss_dssp ECTTCBHHHHHHHHHHCCSEEEEEEEEEC
T ss_pred EcCCCCHHHHHHHhhcCCCeEEEEEEeCC
Confidence 99988899999999888888999998753
No 131
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=99.41 E-value=3.3e-12 Score=85.49 Aligned_cols=87 Identities=17% Similarity=0.361 Sum_probs=69.3
Q ss_pred eEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEEEECC
Q psy16403 25 RNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNN 103 (177)
Q Consensus 25 r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~Ing 103 (177)
.++.+.++. .+|||++... .... .....+++|..|.++|+|+++| |+.||+|++|||
T Consensus 6 ~~v~l~~~~--~~lG~~i~~~-------------~~~~-------~~~~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng 63 (97)
T 2iwn_A 6 FDVELTKNV--QGLGITIAGY-------------IGDK-------KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDG 63 (97)
T ss_dssp EEEEEECBT--TBSCEEEECC-------------CCC-----------CCCCEEEEECTTCHHHHHCCCCTTCEEEEETT
T ss_pred EEEEEecCC--CCCcEEEEcc-------------CCCC-------CCCCCCEEEEEeCCCChHHhCCCCCCCCEEEEECC
Confidence 457777666 8899998862 1000 0112478999999999999999 999999999999
Q ss_pred EEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy16403 104 QTIADLPYAEVVQLIQNSPAYLHLLVVPKE 133 (177)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~ 133 (177)
.++.+.++.++...++..+..+.|++.|++
T Consensus 64 ~~v~~~~~~~~~~~~~~~~~~v~l~v~r~g 93 (97)
T 2iwn_A 64 TNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 93 (97)
T ss_dssp EECTTSCHHHHHHHHHTCCSEEEEEEEEEE
T ss_pred EECCCCCHHHHHHHHHcCCCeEEEEEEeCC
Confidence 999988899999988887888999988754
No 132
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=99.40 E-value=5.9e-12 Score=95.34 Aligned_cols=98 Identities=18% Similarity=0.167 Sum_probs=79.2
Q ss_pred CCcCCCCCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-C
Q psy16403 14 RIKKSSQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-L 92 (177)
Q Consensus 14 ~~~~~~~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l 92 (177)
+......+.....+.|.|.. .+|||++.+ +.+. . ...+++|..|.++|+|+++| |
T Consensus 9 p~~~~~~~~~~~~v~~~~~~--~~lG~~i~~-------------g~~~-~--------~~~g~~V~~V~~~spA~~aG~L 64 (206)
T 3r0h_A 9 PATAEIKPNKKILIELKVEK--KPMGVIVCG-------------GKNN-H--------VTTGCVITHVYPEGQVAADKRL 64 (206)
T ss_dssp TTTCCCCTTSCEEEEEECTT--SCCCEEEEC-------------CSSS-S--------CCSCEEEEEECTTSHHHHHCCC
T ss_pred CCcCCCCCCCEEEEEEEeCC--CCcCEEEec-------------ccCC-C--------CCCCeEEEEECCCChHHhcCCC
Confidence 33334455677889999987 999999986 2211 0 01368999999999999999 9
Q ss_pred CCCCEEEEECCEEcCC--CCHHHHHHHHHcCCCe-EEEEEEeCCcc
Q psy16403 93 VPGDRVVAVNNQTIAD--LPYAEVVQLIQNSPAY-LHLLVVPKEND 135 (177)
Q Consensus 93 ~~GD~I~~Ing~~v~~--~~~~~~~~~l~~~~~~-v~l~v~~~~~~ 135 (177)
+.||+|++|||+++.+ .++.++...++..+.. +.|++.|.+..
T Consensus 65 ~~GD~Il~vng~~v~~~~~~~~~~~~~~~~~~~~~v~l~v~R~~~~ 110 (206)
T 3r0h_A 65 KIFDHICDINGTPIHVGSMTTLKVHQLFHTTYEKAVTLTVFRADPP 110 (206)
T ss_dssp CTTCEEEEETTEECCGGGSCHHHHHHHHHSCCSSEEEEEEECCSSC
T ss_pred CCCCEEEEECCEEcCCCccCHHHHHHHHHhcCCCceEEEEEecccC
Confidence 9999999999999998 8899999999988777 99999886544
No 133
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=99.40 E-value=2.8e-12 Score=95.98 Aligned_cols=91 Identities=22% Similarity=0.406 Sum_probs=75.1
Q ss_pred CCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEEE
Q psy16403 22 LGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVA 100 (177)
Q Consensus 22 ~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~ 100 (177)
...+.++|.|+. .+|||++.+ +.+... .....+++|..|.++|||+++| |+.||+|++
T Consensus 4 ~~~~~v~l~~~~--~~lG~~i~~-------------g~~~~~------~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ 62 (196)
T 3gsl_A 4 MEYEEITLERGN--SGLGFSIAG-------------GTDNPH------IGDDPSIFITKIIPGGAAAQDGRLRVNDSILF 62 (196)
T ss_dssp EEEEEEEEECBT--TBSSEEEEC-------------CTTSCT------TSSCCCEEEEEECTTSHHHHHCCCCTTCEEEE
T ss_pred cEEEEEEEEECC--CCCCEEEEc-------------ccCCcc------cCCCCCEEEEEECCCChHHhcCCCCCCCEEEE
Confidence 356889999988 899999987 222100 0013578999999999999999 999999999
Q ss_pred ECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy16403 101 VNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 133 (177)
Q Consensus 101 Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~ 133 (177)
|||+++.+.++.++...++..+..+.+++.|..
T Consensus 63 vng~~v~~~~~~~~~~~~~~~g~~v~l~v~r~~ 95 (196)
T 3gsl_A 63 VNEVDVREVTHSAAVEALKEAGSIVRLYVMRRK 95 (196)
T ss_dssp ETTEECTTCCHHHHHHHHHTSCSEEEEEEEEEC
T ss_pred ECCEECCCCCHHHHHHHHHhCCCcEEEEEEecC
Confidence 999999998999999999888899999998755
No 134
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Probab=99.39 E-value=3.2e-12 Score=91.70 Aligned_cols=106 Identities=20% Similarity=0.229 Sum_probs=73.5
Q ss_pred CCCCCceEEEEecCCC--CCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCC
Q psy16403 19 SQQLGPRNLILRRSAA--LNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGD 96 (177)
Q Consensus 19 ~~~~~~r~v~l~r~~~--~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD 96 (177)
......++|.|.+... ..+|||++.+..-..+. .. ..+ ......+++|..|.++|||+++||++||
T Consensus 19 ~~~~~~~~v~l~~~~~~~~~~lG~~i~~g~~~~~~--~~-----~~~-----~~~~~~gv~V~~V~~~spA~~aGL~~GD 86 (139)
T 2vz5_A 19 YFQSMVQRVEIHKLRQGENLILGFSIGGGIDQDPS--QN-----PFS-----EDKTDKGIYVTRVSEGGPAEIAGLQIGD 86 (139)
T ss_dssp ---CEEEEEEEECEEETTEEECSEEEEECTTSCGG--GC-----SSC-----SSTTCCCEEEEEECTTSHHHHHTCCTTC
T ss_pred cCCCceEEEEEEEcCCCCcccccEEEEccccCChh--hh-----hhc-----ccCCCCCEEEEEECCCCHHHHCCCCCCC
Confidence 3455678889988652 23789998752100000 00 000 0012357999999999999999999999
Q ss_pred EEEEECCEEcCCCCHHHHHHHHHc-CCCeEEEEEEeCCcce
Q psy16403 97 RVVAVNNQTIADLPYAEVVQLIQN-SPAYLHLLVVPKENDL 136 (177)
Q Consensus 97 ~I~~Ing~~v~~~~~~~~~~~l~~-~~~~v~l~v~~~~~~~ 136 (177)
+|++|||.++.++++.++..+++. .+..+.|++.|++...
T Consensus 87 ~I~~vng~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~ 127 (139)
T 2vz5_A 87 KIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQK 127 (139)
T ss_dssp EEEEETTEECTTCCHHHHHHHHCCTTCSEEEEEEEECC---
T ss_pred EEEEECCEEcCCCCHHHHHHHHHhCCCCEEEEEEEECCEEE
Confidence 999999999998889999999986 3577999999876543
No 135
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}
Probab=99.39 E-value=2.6e-12 Score=88.02 Aligned_cols=82 Identities=17% Similarity=0.190 Sum_probs=68.0
Q ss_pred eEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEEEECC
Q psy16403 25 RNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNN 103 (177)
Q Consensus 25 r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~Ing 103 (177)
.++.|.|.. ..++||.+... ..+++|..|.++|||+++| |++||+|++|||
T Consensus 4 ~~v~L~k~~-~~glG~~i~~~---------------------------~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing 55 (106)
T 2la8_A 4 FNVDLMKKA-GKELGLSLSPN---------------------------EIGCTIADLIQGQYPEIDSKLQRGDIITKFNG 55 (106)
T ss_dssp EEEEECCBS-SSTTCCEEEEC---------------------------SSSEEEEECCTTSCHHHHTTCCTTCEEEEESS
T ss_pred EEEEEEeCC-CCccCEEEEeC---------------------------CCCEEEEEECCCCHHHHCCCCCCCCEEEEECC
Confidence 356776544 47888877541 1368999999999999999 999999999999
Q ss_pred EEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 104 QTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
+++.+.++.++...++..++.+.|++.|...
T Consensus 56 ~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~ 86 (106)
T 2la8_A 56 DALEGLPFQVCYALFKGANGKVSMEVTRPKP 86 (106)
T ss_dssp CBCSSSCHHHHHHHHHSCBSCEEEEEEECCS
T ss_pred EECCCCCHHHHHHHHhCCCCeEEEEEEeCCC
Confidence 9999889999999998888889999988643
No 136
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}
Probab=99.38 E-value=4.8e-12 Score=85.57 Aligned_cols=79 Identities=25% Similarity=0.452 Sum_probs=65.8
Q ss_pred ceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEEEECC
Q psy16403 24 PRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNN 103 (177)
Q Consensus 24 ~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing 103 (177)
.+.+.|.+.. .+|||.+... ..+.+|..|.++|||++|||++||+|++|||
T Consensus 18 ~~~l~l~~~~--~g~G~~l~~~---------------------------~~~~~I~~V~~gSpA~~AGL~~GD~I~~Ing 68 (101)
T 3qik_A 18 AKRLLILPQE--EDYGFDIEEK---------------------------NKAVVVKSVQRGSLAEVAGLQVGRKIYSINE 68 (101)
T ss_dssp EEEEEECCCS--SSSSEEEEEE---------------------------TTEEEEEEECTTSHHHHHTCCTTCBEEEETT
T ss_pred cCeEEEEeCC--CcccEEEEcc---------------------------CCCeEEEEECCCCHHHHcCCCCCCEEEEECC
Confidence 4567777766 8999988751 1257899999999999999999999999999
Q ss_pred EEcCCCCHHHHHHHHHc---CCCeEEEEEEe
Q psy16403 104 QTIADLPYAEVVQLIQN---SPAYLHLLVVP 131 (177)
Q Consensus 104 ~~v~~~~~~~~~~~l~~---~~~~v~l~v~~ 131 (177)
.++...+|+++...++. .++.+.|.|..
T Consensus 69 ~~v~~~s~~dv~~~i~~~~~~g~~v~LLV~~ 99 (101)
T 3qik_A 69 DLVFLRPFSEVESILNQSFCSRRPLRLLVAT 99 (101)
T ss_dssp EESTTSCHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred EEcCcCCHHHHHHHHHHhhccCCeEEEEEec
Confidence 99976699999999986 47778887764
No 137
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=99.38 E-value=2.2e-12 Score=90.95 Aligned_cols=91 Identities=19% Similarity=0.356 Sum_probs=74.6
Q ss_pred CCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCC-CCCCEE
Q psy16403 20 QQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGL-VPGDRV 98 (177)
Q Consensus 20 ~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl-~~GD~I 98 (177)
.....+.+.|.++. ..+|||.+... .. ..+++|..|.++|||+++|+ +.||+|
T Consensus 5 ~~~~~~~v~l~~~~-~~glG~~~~~~-------------~~------------~~~~~V~~V~~~spA~~aGll~~GD~I 58 (127)
T 1b8q_A 5 IEPNVISVRLFKRK-VGGLGFLVKER-------------VS------------KPPVIISDLIRGGAAEQSGLIQAGDII 58 (127)
T ss_dssp CCCCSEEEEEECTT-TSCCSCCEEEC-------------TT------------SSCEEECCCSSSSSHHHHSSCCTTTCC
T ss_pred cCCceEEEEEEeCC-CCcEeEEEEec-------------CC------------CCCEEEEEeCCCCHHHHcCCCCCCCEE
Confidence 34568899999886 67999988751 11 13689999999999999997 999999
Q ss_pred EEECCEEcCCCCHHHHHHHHHcC-CCeEEEEEEeCCcce
Q psy16403 99 VAVNNQTIADLPYAEVVQLIQNS-PAYLHLLVVPKENDL 136 (177)
Q Consensus 99 ~~Ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~~~~~~~ 136 (177)
++|||+++.++++.++..+++.. +..+.+++.|.+...
T Consensus 59 ~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~ 97 (127)
T 1b8q_A 59 LAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGF 97 (127)
T ss_dssp CEETTEECSSSCHHHHHHHHHSCCSSCEEEEEECCCCSE
T ss_pred EEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEeCCceE
Confidence 99999999977799999999864 467899998866543
No 138
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=99.38 E-value=3.7e-12 Score=86.52 Aligned_cols=92 Identities=21% Similarity=0.373 Sum_probs=70.9
Q ss_pred CCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEEEE
Q psy16403 22 LGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAV 101 (177)
Q Consensus 22 ~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~I 101 (177)
....++++.|++ +|||++.+. ....+. . -.....+++|..|.++|||++ ||++||+|++|
T Consensus 10 ~~~~~v~l~~~~---~lG~~i~gg-------------~~~~~~--p-~~~~~~gv~V~~V~~~spA~~-gL~~GD~I~~v 69 (103)
T 1n7t_A 10 KQEIRVRVEKDP---ELGFSISGG-------------VGGRGN--P-FRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQA 69 (103)
T ss_dssp CCCEEEEEECSS---CCCBEEEEC-------------TTSSBC--S-SCSSCCSEECCCBSSSSTTSS-SCCTTCEEEEE
T ss_pred cEEEEEEEccCC---CccEEEEcc-------------cCCCCC--c-cccCCCCEEEEEECCCCchHH-CCCCCCEEEEE
Confidence 345667777654 899999862 211100 0 011235789999999999999 99999999999
Q ss_pred CCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy16403 102 NNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 133 (177)
Q Consensus 102 ng~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~ 133 (177)
||+++.+.++.++...++..+..+.|++.|+.
T Consensus 70 ng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~ 101 (103)
T 1n7t_A 70 NGYSFINIEHGQAVSLLKTFQNTVELIIVREV 101 (103)
T ss_dssp TTEECSSCCHHHHHHHHHHCCSEEEEEEECCC
T ss_pred CCEECCCCCHHHHHHHhhcCCCeEEEEEEecC
Confidence 99999988899999999888888999998753
No 139
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.38 E-value=5e-12 Score=87.83 Aligned_cols=85 Identities=18% Similarity=0.272 Sum_probs=70.2
Q ss_pred CCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEEEE
Q psy16403 22 LGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAV 101 (177)
Q Consensus 22 ~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~I 101 (177)
..+|.|.+.+.. .+|||.+... . ..+++|..|.++|||+++||++||+|++|
T Consensus 18 ~~~~~v~l~~~~--~~lG~~~~~~-------------~-------------~~gv~V~~V~~~spA~~aGL~~GD~Il~v 69 (117)
T 1uit_A 18 EEPRHVKVQKGS--EPLGISIVSG-------------E-------------KGGIYVSKVTVGSIAHQAGLEYGDQLLEF 69 (117)
T ss_dssp CCCEEEEEECSS--CCCCEEEEEC-------------T-------------TSCEEEEEECTTSHHHHHTCCTTCEECEE
T ss_pred CCCEEEEEEeCC--CCccEEEEcc-------------C-------------CCCEEEEEECCCCHHHHcCCCCCCEEEEE
Confidence 357889999887 8999998751 1 13689999999999999999999999999
Q ss_pred CCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 102 NNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 102 ng~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
||+++.+.++.+....+...++.+.+++.|.+.
T Consensus 70 ng~~v~~~~~~~~~~~~~~~g~~v~l~v~r~~~ 102 (117)
T 1uit_A 70 NGINLRSATEQQARLIIGQQCDTITILAQYNPH 102 (117)
T ss_dssp TTEETTTCCHHHHHHHTTSCCSEEEEEECCCSC
T ss_pred CCEECCCCCHHHHHHHHHcCCCeEEEEEEECCc
Confidence 999999877777776666667888998887544
No 140
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=99.38 E-value=5.3e-12 Score=95.35 Aligned_cols=89 Identities=21% Similarity=0.167 Sum_probs=75.0
Q ss_pred CCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHc-CCCCCCEE
Q psy16403 20 QQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAA-GLVPGDRV 98 (177)
Q Consensus 20 ~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~a-Gl~~GD~I 98 (177)
.+..++.++|.|.. ..+|||++... .. ...+++|..|.++|||+++ ||+.||+|
T Consensus 4 ~~~~~~~v~l~~~~-~~~lG~~i~~~-------------~~-----------~~~~~~V~~v~~~spA~~aggl~~GD~I 58 (200)
T 2qt5_A 4 SFKGSTVVELMKKE-GTTLGLTVSGG-------------ID-----------KDGKPRVSNLRQGGIAARSDQLDVGDYI 58 (200)
T ss_dssp CCEEEEEEEEECCT-TCCCCEEEECC-------------TT-----------SSSCSEEEEECTTSHHHHTTSCCTTCEE
T ss_pred ccCCCEEEEEEeCC-CCCCCEEEecc-------------cC-----------CCCCeEEEEECCCChHHhcCCCCCCCEE
Confidence 45567889998876 68999999862 11 1235799999999999999 89999999
Q ss_pred EEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy16403 99 VAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 133 (177)
Q Consensus 99 ~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~ 133 (177)
++|||+++.+.++.++..+++..+..+.+++.|..
T Consensus 59 ~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~ 93 (200)
T 2qt5_A 59 KAVNGINLAKFRHDEIISLLKNVGERVVLEVEYEL 93 (200)
T ss_dssp EEETTEECTTSCHHHHHHHHHTCCSEEEEEEEEEC
T ss_pred EEECCEECCCCCHHHHHHHHHhCCCeEEEEEeccC
Confidence 99999999988889999999888888999998754
No 141
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B
Probab=99.38 E-value=8.6e-12 Score=85.87 Aligned_cols=86 Identities=20% Similarity=0.393 Sum_probs=70.6
Q ss_pred eEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCC-CCCCEEEEECC
Q psy16403 25 RNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGL-VPGDRVVAVNN 103 (177)
Q Consensus 25 r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl-~~GD~I~~Ing 103 (177)
.+|.|.|+. ..+|||.+... . ...+++|..|.++|||+++|+ +.||+|++|||
T Consensus 3 ~~v~l~~~~-~~glG~~~~~~-------------~------------~~~~~~V~~v~~~spA~~aGll~~GD~I~~ing 56 (112)
T 1qau_A 3 ISVRLFKRK-VGGLGFLVKER-------------V------------SKPPVIISDLIRGGAAEQSGLIQAGDIILAVND 56 (112)
T ss_dssp EEEEEECBT-TTBTSEEEEEC-------------S------------SSSCEEEEEECTTSHHHHHTCCCTTCEEEEETT
T ss_pred EEEEEEcCC-CCceeEEEEec-------------C------------CCCCEEEEEeCCCChHHHcCCCCCCCEEEEECC
Confidence 467887775 57899998762 1 123689999999999999997 99999999999
Q ss_pred EEcCCCCHHHHHHHHHcC-CCeEEEEEEeCCcce
Q psy16403 104 QTIADLPYAEVVQLIQNS-PAYLHLLVVPKENDL 136 (177)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~-~~~v~l~v~~~~~~~ 136 (177)
.++.+++++++..+++.. +..+.+++.|.+...
T Consensus 57 ~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~ 90 (112)
T 1qau_A 57 RPLVDLSYDSALEVLRGIASETHVVLILRGPEGF 90 (112)
T ss_dssp EECTTSCHHHHHHHHHHSCSSSEEEEEEECCTTS
T ss_pred EECCCCCHHHHHHHHHhCCCCcEEEEEEeCCccc
Confidence 999977799999999864 577999999876543
No 142
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.38 E-value=1.3e-11 Score=82.96 Aligned_cols=83 Identities=25% Similarity=0.418 Sum_probs=69.2
Q ss_pred CCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEEE
Q psy16403 21 QLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVA 100 (177)
Q Consensus 21 ~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~ 100 (177)
....+++.|.|+. .+|||++... . .+++|..|.++ |+++||++||+|++
T Consensus 8 ~~~~~~v~l~~~~--~g~G~~i~~~-------------~--------------~Gv~V~~v~~~--a~~aGL~~GD~I~~ 56 (96)
T 1ujv_A 8 QAELMTLTIVKGA--QGFGFTIADS-------------P--------------TGQRVKQILDI--QGCPGLCEGDLIVE 56 (96)
T ss_dssp CCCCEEEEEECCS--SSSSEEEEEE-------------T--------------TEEEEEEESCG--GGSTTCCSSCEEEE
T ss_pred CceEEEEEEEeCC--CceeEEEEcC-------------C--------------CCEEEEEEecc--cccCCCCCCCEEEE
Confidence 4566889999988 8999998641 0 24789999883 78899999999999
Q ss_pred ECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCc
Q psy16403 101 VNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKEN 134 (177)
Q Consensus 101 Ing~~v~~~~~~~~~~~l~~~--~~~v~l~v~~~~~ 134 (177)
|||+++.+++|.++.++++.. +..+.|++.|.+.
T Consensus 57 vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~ 92 (96)
T 1ujv_A 57 INQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGSG 92 (96)
T ss_dssp ETTEECSSCCHHHHHHHHHHSCTTSEEEEEEECCSS
T ss_pred ECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECCC
Confidence 999999998999999999874 6789999988643
No 143
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}
Probab=99.07 E-value=4.2e-14 Score=98.00 Aligned_cols=87 Identities=25% Similarity=0.387 Sum_probs=71.2
Q ss_pred CCCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhH-cCCCCCCE
Q psy16403 19 SQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAA-AGLVPGDR 97 (177)
Q Consensus 19 ~~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~-aGl~~GD~ 97 (177)
..+..+|++.|.|.. ..+|||++.+. .. ...+++|..|.++|||++ +||++||+
T Consensus 23 ~~~~~~~~v~l~k~~-~~glG~~l~~g-------------~~-----------~~~gv~V~~V~~~spA~~~aGL~~GD~ 77 (112)
T 2lob_A 23 LYFQGIRKVLLLKED-HEGLGISITGG-------------KE-----------HGVPILISEIHPGQPADRCGGLHVGDA 77 (112)
Confidence 356678899998876 57999998762 11 113689999999999999 89999999
Q ss_pred EEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEE
Q psy16403 98 VVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 130 (177)
Q Consensus 98 I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~ 130 (177)
|++|||.++.+.++.++..+++..++.+.|++.
T Consensus 78 Il~ING~~v~~~~~~~~~~~l~~~~~~v~l~V~ 110 (112)
T 2lob_A 78 ILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVV 110 (112)
Confidence 999999999877899999999877776776654
No 144
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A
Probab=99.37 E-value=8e-12 Score=86.35 Aligned_cols=87 Identities=26% Similarity=0.415 Sum_probs=70.6
Q ss_pred CCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEE
Q psy16403 20 QQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVV 99 (177)
Q Consensus 20 ~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~ 99 (177)
...+++++++.+.. ..+|||++... . ....+++|..|.++++|+++||+.||+|+
T Consensus 12 ~~~~~~~v~~~~~~-~~~lG~~l~~~-------------~-----------~~~~gv~V~~V~~~s~A~~aGL~~GD~Il 66 (114)
T 1x5n_A 12 RENKEKKVFISLVG-SRGLGCSISSG-------------P-----------IQKPGIFISHVKPGSLSAEVGLEIGDQIV 66 (114)
T ss_dssp CCCSSEEEEECCCS-SCCCCEEEEEC-------------C-----------SSSCSEEEEEECTTSTTTTTTCCTTCEEE
T ss_pred CCCCcEEEEEEEcC-CCceeEEEeec-------------C-----------CCCCCEEEEEECCCCHHHHcCCCCCCEEE
Confidence 34567888887665 58999999861 1 11246899999999999999999999999
Q ss_pred EECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy16403 100 AVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK 132 (177)
Q Consensus 100 ~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~ 132 (177)
+|||+++.+.++.++...++.. ..+.+++.|.
T Consensus 67 ~vng~~v~~~~~~~~~~~~~~~-~~v~l~v~r~ 98 (114)
T 1x5n_A 67 EVNGVDFSNLDHKEAVNVLKSS-RSLTISIVAA 98 (114)
T ss_dssp EETTEETTSCCTTHHHHHHHHC-SSEEEEECSS
T ss_pred EECCEECCCCCHHHHHHHHhcC-CeEEEEEEcC
Confidence 9999999988777788888765 5788888776
No 145
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.35 E-value=6.3e-12 Score=88.76 Aligned_cols=81 Identities=22% Similarity=0.303 Sum_probs=69.1
Q ss_pred CceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEEEE
Q psy16403 23 GPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAV 101 (177)
Q Consensus 23 ~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~I 101 (177)
....+.|.++. .++||++... ..+++|..|.++|||+++| |+.||+|++|
T Consensus 27 ~~~~~~l~k~~--~glG~~i~~~---------------------------~~~v~V~~V~~gspA~~aG~L~~GD~Il~V 77 (126)
T 1wif_A 27 KVIQTKLTVGN--LGLGLVVIQN---------------------------GPYLQISHLINKGAAASDGILQPGDVLISV 77 (126)
T ss_dssp CEEEEEEECCT--TCCCCCEEEE---------------------------TTEEEECCCCTTSSGGGCSSSCTTCBEEEE
T ss_pred ceEEEEEecCC--ceEeEEEEcC---------------------------CCcEEEEEECCCCHHHHcCCCCCCCEEEEE
Confidence 45667788877 8999988651 1357899999999999999 9999999999
Q ss_pred CCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeC
Q psy16403 102 NNQTIADLPYAEVVQLIQN--SPAYLHLLVVPK 132 (177)
Q Consensus 102 ng~~v~~~~~~~~~~~l~~--~~~~v~l~v~~~ 132 (177)
||.++.+.+|.++..+++. .+..+.|++.|+
T Consensus 78 nG~~v~~~s~~d~~~~l~~~~~G~~v~l~V~R~ 110 (126)
T 1wif_A 78 GHANVLGYTLREFLKLLQNITIGTVLQIKAYRG 110 (126)
T ss_dssp SSSCCTTCCHHHHHHHHTSCCSSCEEEEEEESS
T ss_pred CCEEcCCCCHHHHHHHHhcCCCCCEEEEEEEEC
Confidence 9999988899999999987 367899999886
No 146
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.35 E-value=6.7e-13 Score=90.32 Aligned_cols=62 Identities=29% Similarity=0.408 Sum_probs=55.8
Q ss_pred ceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCcce
Q psy16403 75 TIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 136 (177)
Q Consensus 75 ~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~~ 136 (177)
+++|..|.++|||+++||++||+|++|||+++.++++.++..+++..+..+.|++.|.+...
T Consensus 30 ~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~g~~~ 91 (103)
T 1v5l_A 30 PLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETRL 91 (103)
T ss_dssp EEECSCBCTTSTTGGGTCCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEECEECCCTTTT
T ss_pred CeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEECCeEc
Confidence 57899999999999999999999999999999977799999999887888999998866543
No 147
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=99.35 E-value=1.9e-11 Score=78.96 Aligned_cols=58 Identities=28% Similarity=0.462 Sum_probs=52.5
Q ss_pred ceEEEeeCCCCHHhHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy16403 75 TIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK 132 (177)
Q Consensus 75 ~~~V~~V~~gs~A~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~ 132 (177)
+++|..|.++|+|+++| |+.||+|++|||.++.++++.++..+++..++.+.+++.|.
T Consensus 22 gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~ 80 (81)
T 2rcz_A 22 HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRD 80 (81)
T ss_dssp EEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEEEEC-
T ss_pred CEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCeEEEEEEeC
Confidence 57999999999999999 99999999999999999999999999987777888888764
No 148
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=3.1e-12 Score=88.86 Aligned_cols=90 Identities=20% Similarity=0.386 Sum_probs=71.0
Q ss_pred CCCCceEEEEecCCCC-CceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEE
Q psy16403 20 QQLGPRNLILRRSAAL-NGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRV 98 (177)
Q Consensus 20 ~~~~~r~v~l~r~~~~-~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I 98 (177)
.+..++.+.|.|.+.. .+|||.|.... .. + ..+++|..|.++|||+++||++||+|
T Consensus 12 ~~~~~~~v~l~k~~~~~~~~G~~v~~~~-------------~~-~---------~~gv~V~~V~~~spA~~aGL~~GD~I 68 (114)
T 2d8i_A 12 CPKVTQSIHIEKSDTAADTYGFSLSSVE-------------ED-G---------IRRLYVNSVKETGLASKKGLKAGDEI 68 (114)
T ss_dssp SCCEEEEEEEECSCTTTCCCCCEEEEEE-------------ET-T---------EEEEEEEECCTTSSHHHHTCCTTCCE
T ss_pred ccCceEEEEEEeCCCCccccCEEEEecC-------------cC-C---------cCCEEEEEeCCCCHHHHcCCCCCCEE
Confidence 3456799999998822 27999987521 00 1 13589999999999999999999999
Q ss_pred EEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 99 VAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 99 ~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
++|||+++.+++|.++..+++. ..+.|++.|...
T Consensus 69 l~Ing~~v~~~~~~~~~~~l~~--~~v~l~v~R~p~ 102 (114)
T 2d8i_A 69 LEINNRAADALNSSMLKDFLSQ--PSLGLLVRTYPE 102 (114)
T ss_dssp EEESSCBGGGCCHHHHHHHHTS--SEEEEEEEECCC
T ss_pred EEECCEECCCcCHHHHHHHHhC--CcEEEEEEECCC
Confidence 9999999998888999998874 478888887543
No 149
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Probab=99.34 E-value=2.1e-11 Score=85.77 Aligned_cols=61 Identities=30% Similarity=0.439 Sum_probs=54.0
Q ss_pred CceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCc
Q psy16403 74 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKEN 134 (177)
Q Consensus 74 ~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~~~~~ 134 (177)
.+++|..|.++|||+++||+.||+|++|||.++.+.+++++...+.. .+..+.|++.|...
T Consensus 51 ~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~ 113 (124)
T 3tsv_A 51 VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKD 113 (124)
T ss_dssp SCEEEEEECTTCHHHHTTCCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCEEEEEEEECHH
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECCc
Confidence 46899999999999999999999999999999998888999998874 56789999888643
No 150
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.33 E-value=1.6e-10 Score=81.44 Aligned_cols=88 Identities=26% Similarity=0.323 Sum_probs=69.3
Q ss_pred CCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEEEE
Q psy16403 22 LGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAV 101 (177)
Q Consensus 22 ~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~I 101 (177)
.+++++.+.... ...|||.+.. +.. ...+++|..|.++|||+++||++||+|++|
T Consensus 19 g~~~~v~v~~~~-~~~lG~~~~~-------------~~~-----------~~~gv~V~~V~~~spA~~aGL~~GD~I~~v 73 (128)
T 1uf1_A 19 GDEKKVNLVLGD-GRSLGLTIRG-------------GAE-----------YGLGIYITGVDPGSEAEGSGLKVGDQILEV 73 (128)
T ss_dssp SSEEEEEEECCS-SCCCCEEEEC-------------CTT-----------TTCCCEEEEECTTCHHHHHTCCTTCEEEEE
T ss_pred CcEEEEEEEECC-CCccCEEEEC-------------ccc-----------CCCCEEEEEECCCCHHHHCCCCCCCEEEEE
Confidence 356778887654 3678998875 111 123689999999999999999999999999
Q ss_pred CCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Q psy16403 102 NNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135 (177)
Q Consensus 102 ng~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~ 135 (177)
||.++.+.++.+++..++. +..+.|++.|.+..
T Consensus 74 ng~~v~~~~~~~~~~~~~~-~~~v~l~v~R~g~~ 106 (128)
T 1uf1_A 74 NGRSFLNILHDEAVRLLKS-SRHLILTVKDVGRL 106 (128)
T ss_dssp TTEECSSCCHHHHHHHHTT-CSEEEEEEECCSCC
T ss_pred CCEECCCCCHHHHHHHHhc-CCeEEEEEEECCcc
Confidence 9999998888888888865 46888888876543
No 151
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=99.32 E-value=3.1e-12 Score=98.23 Aligned_cols=87 Identities=31% Similarity=0.465 Sum_probs=72.9
Q ss_pred CCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEE
Q psy16403 20 QQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVV 99 (177)
Q Consensus 20 ~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~ 99 (177)
....+|.|+|.++. .+|||.+... .. ..+++|..|.++++|+++||+.||+|+
T Consensus 6 ~~~~~r~v~l~k~~--~glG~~l~~~-------------~~------------~~gv~V~~V~~gSpA~~aGL~~GD~Il 58 (216)
T 2krg_A 6 TMLRPRLCTMKKGP--SGYGFNLHSD-------------KS------------KPGQFIRSVDPDSPAEASGLRAQDRIV 58 (216)
T ss_dssp TTCCCEEEEEECCS--SSSCEEECCC-------------SS------------SCSCBEEEECTTSHHHHHTCCTTCBCC
T ss_pred cccceEEEEEEeCC--CCceEEEEec-------------CC------------CCCeEEEEeCCCChHHHcCCCCCCEEE
Confidence 34678999999988 8999998761 11 136899999999999999999999999
Q ss_pred EECCEEcCCCCHHHHHHHHHcCCCeE-EEEEEeCC
Q psy16403 100 AVNNQTIADLPYAEVVQLIQNSPAYL-HLLVVPKE 133 (177)
Q Consensus 100 ~Ing~~v~~~~~~~~~~~l~~~~~~v-~l~v~~~~ 133 (177)
+|||+++.++++.++..+++..+..+ .+++.|.+
T Consensus 59 ~VNG~~V~~~s~~dl~~~l~~~g~~v~~l~V~R~g 93 (216)
T 2krg_A 59 EVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRET 93 (216)
T ss_dssp EETTEECTTCCTHHHHHHHHHHCSEEEEEECCHHH
T ss_pred EECCEECCCCCHHHHHHHHHhcCCeEEEEEEEECC
Confidence 99999999999999999998767777 67665543
No 152
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.32 E-value=1.4e-11 Score=86.58 Aligned_cols=92 Identities=26% Similarity=0.370 Sum_probs=71.4
Q ss_pred CCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEE
Q psy16403 21 QLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVV 99 (177)
Q Consensus 21 ~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~ 99 (177)
....+.+.+.+.....++||.+... ... ....+++|..|.++|||+++| |++||+|+
T Consensus 17 ~~~~~~~~~~~~~~~~~lG~~~~~~-------------~~~---------~~~~gv~V~~V~~~spA~~aG~l~~GD~I~ 74 (124)
T 1wh1_A 17 ELELEEVDLYRMNSQDKLGLTVCYR-------------TDD---------EDDIGIYISEIDPNSIAAKDGRIREGDRII 74 (124)
T ss_dssp SCEECCBCCCCSSTTCCCCEEEECC-------------CCC---------SSCCCEEEEEECSSSHHHHTCCCCTTCEEE
T ss_pred cceEEEEEEEecCCCCcccEEEEec-------------CCC---------CCCCCEEEEEECCCCHHHHcCCCCCCCEEE
Confidence 3445567777776456899998762 100 012478999999999999999 99999999
Q ss_pred EECCEEcCCCCHHHHHHHHHcC-CCeEEEEEEeCCcce
Q psy16403 100 AVNNQTIADLPYAEVVQLIQNS-PAYLHLLVVPKENDL 136 (177)
Q Consensus 100 ~Ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~~~~~~~ 136 (177)
+|||+++. ++.++..+++.. +..+.|++.|.+...
T Consensus 75 ~ing~~v~--~~~~~~~~l~~~~g~~v~l~v~R~g~~~ 110 (124)
T 1wh1_A 75 QINGIEVQ--NREEAVALLTSEENKNFSLLIARPELQL 110 (124)
T ss_dssp EESSCBCC--SHHHHHHHHTCSSCCSCCEEEEECSSCC
T ss_pred EECCEECC--CHHHHHHHHHhCCCCEEEEEEEECCEEe
Confidence 99999999 799999999874 567899998866543
No 153
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.32 E-value=1.4e-11 Score=85.88 Aligned_cols=86 Identities=21% Similarity=0.359 Sum_probs=67.5
Q ss_pred CceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHc-CCCCCCEEEEE
Q psy16403 23 GPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAA-GLVPGDRVVAV 101 (177)
Q Consensus 23 ~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~a-Gl~~GD~I~~I 101 (177)
..+.+.+.+. .+|||++.+. .+ .....++|..|.++|||+++ ||+.||+|++|
T Consensus 18 ~~~~~~~~~~---~glG~~i~gg-------------~~----------~~~~~i~I~~V~~gspA~~aggL~~GD~Il~I 71 (118)
T 1v6b_A 18 DVRLLRIKKE---GSLDLALEGG-------------VD----------SPVGKVVVSAVYEGGAAERHGGVVKGDEIMAI 71 (118)
T ss_dssp CEEEEEEESC---SCCCCEEEEB-------------TT----------SSSCSEEEEECCTTSHHHHHCSSCTTCEEEEE
T ss_pred eEEEEEECCC---CccCEEEEcc-------------cC----------CCCCCEEEEEECCCCHHHHcCCCCCCCEEEEE
Confidence 3455666543 4899998762 11 11134899999999999999 79999999999
Q ss_pred CCEEcCCCCHHHHHHHHHcC----CCeEEEEEEeCCc
Q psy16403 102 NNQTIADLPYAEVVQLIQNS----PAYLHLLVVPKEN 134 (177)
Q Consensus 102 ng~~v~~~~~~~~~~~l~~~----~~~v~l~v~~~~~ 134 (177)
||.++.+++|+++..+++.. +..+.|++.|...
T Consensus 72 ng~~v~~~~~~~~~~~l~~~~~~~g~~v~l~v~r~~~ 108 (118)
T 1v6b_A 72 NGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPP 108 (118)
T ss_dssp SSCBCTTCBHHHHHHHHHHHHHHTCSEEEEEEECCCS
T ss_pred CCEECCCCCHHHHHHHHHHhhhcCCCeEEEEEEeCCc
Confidence 99999988999999988754 6789999988543
No 154
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=99.32 E-value=2.3e-11 Score=82.57 Aligned_cols=60 Identities=23% Similarity=0.375 Sum_probs=53.3
Q ss_pred CCceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC-CCeEEEEEEeC
Q psy16403 73 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS-PAYLHLLVVPK 132 (177)
Q Consensus 73 ~~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~~~ 132 (177)
..+++|..|.++|||+++||+.||+|++|||.++.+.+|+++...++.. +..+.+++.|+
T Consensus 44 ~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~ 104 (104)
T 3sfj_A 44 DKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQ 104 (104)
T ss_dssp CCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHTCTTCSEEEEEEEEC
T ss_pred CCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEEEEEcC
Confidence 3578999999999999999999999999999999988999999999764 56788888763
No 155
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=99.32 E-value=2e-11 Score=80.71 Aligned_cols=60 Identities=23% Similarity=0.239 Sum_probs=52.4
Q ss_pred CceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCC
Q psy16403 74 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKE 133 (177)
Q Consensus 74 ~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~~~~ 133 (177)
.+++|..|.++|||+++||+.||+|++|||.++.+.++.++..+++. .+..+.+++.|.+
T Consensus 28 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g 89 (90)
T 2eaq_A 28 PGIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVMDVRRYG 89 (90)
T ss_dssp TEEEEEEECTTSHHHHTTCCTTCEEEEETTEECCTTCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred CCEEEEEECCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHHHhcCCCCEEEEEEEeCC
Confidence 36899999999999999999999999999999965589999998874 4678899888753
No 156
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=99.29 E-value=2.7e-11 Score=91.25 Aligned_cols=92 Identities=25% Similarity=0.358 Sum_probs=75.0
Q ss_pred CCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEEE
Q psy16403 22 LGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVA 100 (177)
Q Consensus 22 ~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~ 100 (177)
...++++|.|+. ..+|||.+.+. .... .....+++|..|.++|||+++| |+.||+|++
T Consensus 5 ~~~~~v~l~~~~-~~glG~~i~~~-------------~~~~-------~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~ 63 (196)
T 1p1d_A 5 TETTEVVLTADP-VTGFGIQLQGS-------------VFAT-------ETLSSPPLISYIEADSPAERCGVLQIGDRVMA 63 (196)
T ss_dssp CEEEEEEEECBT-TTBCCCEEEEC-------------SSCS-------SSCSCSEEEEECCTTSHHHHTSCCCSSCCEEE
T ss_pred cEEEEEEEEeCC-CCccCEEEeCC-------------cCCC-------CCCCCCEEEEEECCCCHHHHcCCCCCCCEEEE
Confidence 456789999886 68999999872 1110 0112468999999999999999 999999999
Q ss_pred ECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCc
Q psy16403 101 VNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKEN 134 (177)
Q Consensus 101 Ing~~v~~~~~~~~~~~l~~~--~~~v~l~v~~~~~ 134 (177)
|||+++.+++|.++..+++.. +..+.+++.|.+.
T Consensus 64 vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~ 99 (196)
T 1p1d_A 64 INGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVA 99 (196)
T ss_dssp ETTBCSTTSCHHHHHHHHHTCCSSSEEEEEEEECSC
T ss_pred ECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEecCC
Confidence 999999988899999999876 6789999988663
No 157
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=99.28 E-value=2.6e-11 Score=90.70 Aligned_cols=91 Identities=21% Similarity=0.317 Sum_probs=70.3
Q ss_pred ceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEEEEC
Q psy16403 24 PRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVN 102 (177)
Q Consensus 24 ~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~In 102 (177)
.+++.+.+.. .+|||.+.... .... .....+++|..|.++|+|+++| |++||+|++||
T Consensus 101 ~~~v~l~~~~--~~lG~~~~~~~-------------~~~~------~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vn 159 (196)
T 3gsl_A 101 VMEIKLIKGP--KGLGFSIAGGV-------------GNQH------IPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVN 159 (196)
T ss_dssp EEEEEEEEBT--TBSCEEEEESB-------------TSCS------BTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEET
T ss_pred cEEEEEecCC--CCceEEEEccC-------------CCcC------CCCCCCEEEEEECCCChHHhcCCCCCCCEEEEEC
Confidence 3456666666 67888876521 0000 0112468999999999999999 99999999999
Q ss_pred CEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Q psy16403 103 NQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135 (177)
Q Consensus 103 g~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~ 135 (177)
|+++.+++|.++...++..++.+.|++.|++..
T Consensus 160 g~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~~ 192 (196)
T 3gsl_A 160 SVGLEDVMHEDAVAALKNTYDVVYLKVAKPSNA 192 (196)
T ss_dssp TEECSSCBHHHHHHHHHSCCEEEEEEEEEESCC
T ss_pred CCcCCCCCHHHHHHHHHcCCCeEEEEEeCCCCc
Confidence 999997789999999998888899999886543
No 158
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=99.25 E-value=1.7e-10 Score=84.71 Aligned_cols=83 Identities=23% Similarity=0.452 Sum_probs=66.9
Q ss_pred CCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEEEE
Q psy16403 22 LGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAV 101 (177)
Q Consensus 22 ~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~I 101 (177)
+.+|+|+|.|.. ...+||.+... ..+++|..|.++|||+++||+.||+|++|
T Consensus 3 ~~~r~v~l~k~~-~~~lG~~~~~~---------------------------~~g~~V~~v~~~spA~~aGl~~GD~I~~i 54 (166)
T 1w9e_A 3 MDPREVILCKDQ-DGKIGLRLKSI---------------------------DNGIFVQLVQANSPASLVGLRFGDQVLQI 54 (166)
T ss_dssp CCCEEEEEECCT-TSCCSEEEEEE---------------------------TTEEEEEEECTTSHHHHTTCCTTCEEEEE
T ss_pred CCCEEEEEEeCC-CCcEeEEEEeC---------------------------CCCEEEEEECCCChHHHcCCCCCCEEEEE
Confidence 568999999976 57889988752 13689999999999999999999999999
Q ss_pred CCEEcCCCCHHHHHHHHHcC-CCeEEEEEEeCC
Q psy16403 102 NNQTIADLPYAEVVQLIQNS-PAYLHLLVVPKE 133 (177)
Q Consensus 102 ng~~v~~~~~~~~~~~l~~~-~~~v~l~v~~~~ 133 (177)
||+++.+.+.+....+++.. +..+.+++ +++
T Consensus 55 ng~~v~~~~~~~~~~~~~~~~~~~v~l~v-r~~ 86 (166)
T 1w9e_A 55 NGENCAGWSSDKAHKVLKQAFGEKITMTI-RDR 86 (166)
T ss_dssp TTEECTTCCHHHHHHHHHHCCSSEEEEEE-ECC
T ss_pred CCEECCCCCHHHHHHHHhcCCCCEEEEEE-EcC
Confidence 99999976654555666554 45788888 444
No 159
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=99.24 E-value=4.1e-11 Score=89.98 Aligned_cols=58 Identities=28% Similarity=0.551 Sum_probs=54.6
Q ss_pred CCceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEe
Q psy16403 73 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 131 (177)
Q Consensus 73 ~~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~ 131 (177)
..+++|..|.++|||++ ||+.||+|++|||+++.+.++.+++..++..+..+.|++.|
T Consensus 23 ~~g~~V~~v~~~spA~~-gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 80 (195)
T 2qbw_A 23 DDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVR 80 (195)
T ss_dssp CCSEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEEE
T ss_pred CCCEEEEEECCCChHHh-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEE
Confidence 35799999999999999 99999999999999999999999999999888899999998
No 160
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.22 E-value=1e-10 Score=81.62 Aligned_cols=62 Identities=27% Similarity=0.439 Sum_probs=54.8
Q ss_pred CceEEEeeCC--CCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Q psy16403 74 DTIFIKHVRP--HSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135 (177)
Q Consensus 74 ~~~~V~~V~~--gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~ 135 (177)
.+++|..|.+ ++||+++||+.||+|++|||+++.+.++.++..+++..+..+.+++.|.+..
T Consensus 44 ~gv~V~~V~~~~~spA~~aGL~~GD~Il~Vng~~v~~~~~~dl~~~l~~~g~~v~l~v~R~g~~ 107 (118)
T 2yub_A 44 TTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQTSQTLQLLIEHDPVP 107 (118)
T ss_dssp CEEEEEECCTTTSCTTHHHHCCTTCCEEEESSSBTTTSCHHHHHHHHHCCSSCEEEEEEECSSC
T ss_pred CcEEEEEecCCCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHhCCCEEEEEEEECCEE
Confidence 4689999999 9999999999999999999999996666999999987767789999886553
No 161
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=99.19 E-value=1.3e-10 Score=98.42 Aligned_cols=81 Identities=26% Similarity=0.379 Sum_probs=70.1
Q ss_pred ceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEEEECC
Q psy16403 24 PRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNN 103 (177)
Q Consensus 24 ~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing 103 (177)
+|+|.+.|+ .+|||.+.+. . ..+++|..|.+||||+++||+.||+|++|||
T Consensus 2 ~r~V~l~k~---~~lG~~i~gg-------------~-------------~~Gi~V~~V~~gspA~~aGL~~GD~Il~VNG 52 (468)
T 3shw_A 2 MKLVKFRKG---DSVGLRLAGG-------------N-------------DVGIFVAGVLEDSPAAKEGLEEGDQILRVNN 52 (468)
T ss_dssp EEEEEEECC---SSCCEEEEEE-------------T-------------TTEEEEEEECSSSHHHHTTCCTTEEEEEETT
T ss_pred ceEEEEecC---CccceEEEcc-------------C-------------cCCEEEEEECCCCHHHHcCCCCCCEEEEECC
Confidence 578888874 6899998751 1 1468999999999999999999999999999
Q ss_pred EEcCCCCHHHHHHHHHc--CCCeEEEEEEeCC
Q psy16403 104 QTIADLPYAEVVQLIQN--SPAYLHLLVVPKE 133 (177)
Q Consensus 104 ~~v~~~~~~~~~~~l~~--~~~~v~l~v~~~~ 133 (177)
.++.++++.+++.+|+. .+..+.|++.+.+
T Consensus 53 ~~v~~~t~~e~~~~L~~~~~g~~v~L~V~r~g 84 (468)
T 3shw_A 53 VDFTNIIREEAVLFLLDLPKGEEVTILAQKKK 84 (468)
T ss_dssp EECTTCCHHHHHHHHHHSCTTSEEEEEEEECH
T ss_pred EECCCCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence 99998899999999987 6788999998854
No 162
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=99.19 E-value=1.9e-10 Score=86.96 Aligned_cols=61 Identities=15% Similarity=0.192 Sum_probs=55.8
Q ss_pred CceEEEeeCCCCHHhHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 74 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 74 ~~~~V~~V~~gs~A~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
.+++|..|.++|+|+++| |+.||+|++|||+++.+.++.++..+++..++.+.|++.|...
T Consensus 136 ~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~V~R~~~ 197 (206)
T 3r0h_A 136 IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTRPKP 197 (206)
T ss_dssp SCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEEECC
T ss_pred ceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Confidence 468999999999999999 9999999999999999888999999999888889999988543
No 163
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=99.15 E-value=3e-10 Score=100.94 Aligned_cols=91 Identities=22% Similarity=0.406 Sum_probs=75.8
Q ss_pred CCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEEE
Q psy16403 22 LGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVA 100 (177)
Q Consensus 22 ~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~ 100 (177)
..+++++|.|+. .+|||+|.+ |.+... .....+++|..|.++|||+++| |+.||+|++
T Consensus 58 ~~~~~v~l~k~~--~glGf~i~g-------------g~~~~~------~~~~~g~~V~~v~~gspA~~aG~L~~GD~Il~ 116 (721)
T 2xkx_A 58 MEYEEITLERGN--SGLGFSIAG-------------GTDNPH------IGDDPSIFITKIIPGGAAAQDGRLRVNDSILF 116 (721)
T ss_pred ceEEEEEEEeCC--CCCCEEEeC-------------CcCCcc------cCCCCCeEEEEeCCCCHHHhcCCCCCCCEEEE
Confidence 356889999998 799999987 222110 0113578999999999999999 999999999
Q ss_pred ECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy16403 101 VNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 133 (177)
Q Consensus 101 Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~ 133 (177)
|||+++.++++.+++.+++..+..+.|+|.|.+
T Consensus 117 Vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~ 149 (721)
T 2xkx_A 117 VNEVDVREVTHSAAVEALKEAGSIVRLYVMRRK 149 (721)
T ss_pred ECCEECCCCCHHHHHHHhhccccccceEEEecc
Confidence 999999999999999999888888999998765
No 164
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=99.14 E-value=3.9e-10 Score=93.68 Aligned_cols=83 Identities=25% Similarity=0.353 Sum_probs=69.6
Q ss_pred CCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEEEE
Q psy16403 22 LGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAV 101 (177)
Q Consensus 22 ~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~I 101 (177)
+.++.+.+.++. ++||++.+. . ..+++|..|.+||||+++||++||+|++|
T Consensus 8 ~~~~~v~~~k~~---~lG~~i~gg-------------~-------------~~gi~V~~V~~gspA~~aGL~~GD~Il~V 58 (391)
T 3tsz_A 8 PSMKLVKFRKGD---SVGLRLAGG-------------N-------------DVGIFVAGVLEDSPAAKEGLEEGDQILRV 58 (391)
T ss_dssp -CEEEEEEECCS---SCCEEEEEE-------------T-------------TTEEEEEEECTTCHHHHTTCCTTEEEEEE
T ss_pred CCcEEEEeecCC---ceeEEEEec-------------C-------------CCCEEEEEECCCCHHHHcCCCCCCEEEEE
Confidence 456777777665 599998761 1 14689999999999999999999999999
Q ss_pred CCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCC
Q psy16403 102 NNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKE 133 (177)
Q Consensus 102 ng~~v~~~~~~~~~~~l~~--~~~~v~l~v~~~~ 133 (177)
||.++.++++++++.+++. .+..+.|++.+++
T Consensus 59 nG~~v~~~~~~e~~~~l~~~~~g~~v~l~v~r~~ 92 (391)
T 3tsz_A 59 NNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK 92 (391)
T ss_dssp TTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECH
T ss_pred CCEECCCCCHHHHHHHHHhhcCCCeEEEEEeeCC
Confidence 9999998899999999985 6778999998864
No 165
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}
Probab=99.12 E-value=4.3e-10 Score=80.01 Aligned_cols=59 Identities=15% Similarity=0.277 Sum_probs=52.4
Q ss_pred CceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCcc
Q psy16403 74 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKEND 135 (177)
Q Consensus 74 ~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~--~~~v~l~v~~~~~~ 135 (177)
.+++|..|.++|||+ +||+.||+|++|||+++. ++.++...+... ++.+.+++.|++..
T Consensus 57 ~g~~V~~V~~~spA~-aGL~~GD~I~~inG~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~~ 117 (134)
T 2l97_A 57 SGVIVRSVQSNMPAN-GHLEKYDVITKVDDKEIA--SSTDLQSALYNHSIGDTIKITYYRNGKE 117 (134)
T ss_dssp SCEEEEECSTTSGGG-TTSCSSCEEEEETTEECC--CHHHHHHHHHHSSTTCEEEEEEEETTEE
T ss_pred CCEEEEEECCCCchH-HCCCCCCEEEEECCEEcC--CHHHHHHHHHhCCCCCEEEEEEEECCEE
Confidence 578999999999999 999999999999999999 888999888764 67899999986543
No 166
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=99.10 E-value=6.9e-10 Score=83.64 Aligned_cols=60 Identities=27% Similarity=0.458 Sum_probs=55.1
Q ss_pred CceEEEeeCCCCHHhHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy16403 74 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 133 (177)
Q Consensus 74 ~~~~V~~V~~gs~A~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~ 133 (177)
.+++|..|.++|+|+++| |+.||+|++|||.++.+++++++..+++..+..+.|++.|.+
T Consensus 135 ~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~ 195 (200)
T 2qt5_A 135 RPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLIEYDV 195 (200)
T ss_dssp EEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEEEEEEEEE
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECC
Confidence 368999999999999999 999999999999999999999999999987788999888753
No 167
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=99.06 E-value=1.2e-09 Score=97.19 Aligned_cols=84 Identities=24% Similarity=0.500 Sum_probs=72.3
Q ss_pred CceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCEEEEE
Q psy16403 23 GPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAV 101 (177)
Q Consensus 23 ~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~I~~I 101 (177)
.++.|.|.+.. .+|||++.+ +.. ..+++|..|.++|+|+++| |+.||+|++|
T Consensus 307 ~~~~v~l~~~~--~~lG~~i~~-------------~~~------------~~gv~V~~V~~gs~A~~aG~L~~GD~Il~V 359 (721)
T 2xkx_A 307 EPRRIVIHRGS--TGLGFNIVG-------------GED------------GEGIFISFILAGGPADLSGELRKGDQILSV 359 (721)
T ss_pred ceEEEEEEECC--CCccEEEec-------------cCC------------CCCeEEEEeCCCChHHhcCCCccCCEEEEE
Confidence 47889999887 789999875 111 1368999999999999999 9999999999
Q ss_pred CCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy16403 102 NNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 133 (177)
Q Consensus 102 ng~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~ 133 (177)
||.++.++++++++.+++..++.+.|++.+..
T Consensus 360 Ng~~v~~~~~~e~~~~l~~~~~~v~L~v~r~~ 391 (721)
T 2xkx_A 360 NGVDLRNASHEQAAIALKNAGQTVTIIAQYKP 391 (721)
T ss_pred CCEECCCCCHHHHHHHHHhcCCeEEEEEEeCc
Confidence 99999988899999999988888888887754
No 168
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=99.01 E-value=1.3e-09 Score=71.70 Aligned_cols=58 Identities=19% Similarity=0.146 Sum_probs=50.1
Q ss_pred ceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCc
Q psy16403 75 TIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKEN 134 (177)
Q Consensus 75 ~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~~~~~ 134 (177)
++.|..+.|+|+|+++||++||+|++|||+++. ++.++..++.. .+..+.+++.|++.
T Consensus 20 G~~V~~~~~~s~A~~aGl~~GD~I~~ing~~v~--~~~d~~~~~~~~~~g~~v~l~v~R~g~ 79 (87)
T 2i6v_A 20 GYRVSPGKDPVLFESIGLQDGDMAVALNGLDLT--DPNVMNTLFQSMNEMTEMSLTVERDGQ 79 (87)
T ss_dssp EEEEEECSCHHHHHHTTCCTTCEEEEETTEETT--CHHHHHHHHHTGGGCSEEEEEEEETTE
T ss_pred EEEEEeCCCCCHHHHCCCCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 567888888999999999999999999999999 89999888875 35678999988654
No 169
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=99.01 E-value=3.8e-09 Score=79.43 Aligned_cols=60 Identities=25% Similarity=0.441 Sum_probs=54.8
Q ss_pred CceEEEeeCCCCHHhHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy16403 74 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 133 (177)
Q Consensus 74 ~~~~V~~V~~gs~A~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~ 133 (177)
.+++|..|.++|+|+++| |+.||+|++|||.++.+++++++..+++..+..+.|++.|.+
T Consensus 135 ~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~ 195 (196)
T 1p1d_A 135 DPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIRKDE 195 (196)
T ss_dssp CCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCTTCEEEEEECCC
T ss_pred CCEEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEEEeCC
Confidence 468999999999999999 999999999999999977799999999888888999988754
No 170
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=98.97 E-value=8.7e-10 Score=91.46 Aligned_cols=94 Identities=20% Similarity=0.285 Sum_probs=73.7
Q ss_pred CCCCCceEEEEecCCCCCceeEEEeceeecCchhhhhhcCCcccceeeeeccCCCCceEEEeeCCCCHHhHcC-CCCCCE
Q psy16403 19 SQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDR 97 (177)
Q Consensus 19 ~~~~~~r~v~l~r~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aG-l~~GD~ 97 (177)
+.+...+.|.+.|.. ..+|||.+.... . .....+++|..|.++|||+++| |+.||+
T Consensus 200 ~~~~~~~~V~i~k~~-ge~lG~~i~~~~-------------~---------g~~~~g~~V~~V~~gspA~~aG~L~~GD~ 256 (388)
T 3suz_A 200 SNSENCKELQLEKHK-GEILGVVVVESG-------------W---------GSILPTVILANMMNGGPAARSGKLSIGDQ 256 (388)
T ss_dssp CCSSCCEEEEECCCS-SCCCCCCCBCC-------------------------CCSCCCBCCCCCCSSHHHHTCCCCTTCE
T ss_pred cccccceEEEEECCC-CCceeEEEEecC-------------C---------CCcCCCEEEEeeCCCCHHHHcCCCCCCCE
Confidence 345667899999875 589999887521 0 1122457899999999999999 999999
Q ss_pred EEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCcc
Q psy16403 98 VVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKEND 135 (177)
Q Consensus 98 I~~Ing~~v~~~~~~~~~~~l~~~--~~~v~l~v~~~~~~ 135 (177)
|++|||+++.++++.++..+++.. +..+.|++.|....
T Consensus 257 Il~VnG~~v~~~~~~~~~~~l~~~~~~~~v~l~v~r~~~~ 296 (388)
T 3suz_A 257 IMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPPV 296 (388)
T ss_dssp EEEETTEECSSCCSTTHHHHTTTCTTCSCEEEEEEECCSC
T ss_pred EEEECCEEccCCCHHHHHHHHHhccCCCcccccccccccc
Confidence 999999999988888999998875 34588888876543
No 171
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=98.97 E-value=3.7e-09 Score=72.63 Aligned_cols=58 Identities=26% Similarity=0.420 Sum_probs=52.2
Q ss_pred CceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 74 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 74 ~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
.+++|..|.++|||+++||++||+|++|||+++. ++.++...+.. +..+.+++.|++.
T Consensus 35 ~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~--~~~~~~~~l~~-~~~v~l~v~R~g~ 92 (113)
T 2pzd_A 35 HGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQ--NAEDVYEAVRT-QSQLAVQIRRGRE 92 (113)
T ss_dssp SCEEEEEEBTTSHHHHHTCCTTCEEEEETTEECC--SHHHHHHHHHH-CSSEEEEEEETTE
T ss_pred CCeEEEEeCCCChHHHcCCCCCCEEEEECCEECC--CHHHHHHHHhC-CCeEEEEEEECCE
Confidence 5789999999999999999999999999999999 78899998876 6778999988654
No 172
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=98.96 E-value=3.2e-09 Score=71.06 Aligned_cols=57 Identities=19% Similarity=0.251 Sum_probs=50.4
Q ss_pred eEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC-C-CeEEEEEEeCCc
Q psy16403 76 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS-P-AYLHLLVVPKEN 134 (177)
Q Consensus 76 ~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~-~-~~v~l~v~~~~~ 134 (177)
.+|..|.++|||+++||+.||+|++|||+++. +++++...+... + ..+.+++.|.+.
T Consensus 4 p~V~~V~~~spA~~aGl~~GD~I~~ing~~v~--~~~d~~~~l~~~~~~~~v~l~v~R~g~ 62 (95)
T 3id1_A 4 PVVGEIAANSIAAEAQIAPGTELKAVDGIETP--DWDAVRLQLVDKIGDESTTITVAPFGS 62 (95)
T ss_dssp CBEEEECTTSHHHHTTCCTTCEEEEETTEECS--SHHHHHHHHHHTTTCSEEEEEEECTTC
T ss_pred CEEEeeCCCCHHHHcCCCCCCEEEEECCEECC--CHHHHHHHHHHhcCCCcEEEEEEECCC
Confidence 47889999999999999999999999999999 899999988754 3 578999998764
No 173
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=98.96 E-value=4.2e-09 Score=71.03 Aligned_cols=59 Identities=17% Similarity=0.336 Sum_probs=52.0
Q ss_pred CceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCcc
Q psy16403 74 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKEND 135 (177)
Q Consensus 74 ~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~~~~~~ 135 (177)
.+++|..|.++|||+. ||+.||+|++|||.++. ++.++...+.. .+..+.+++.|.+..
T Consensus 7 ~Gv~V~~V~~~spA~~-GL~~GD~I~~Ing~~v~--~~~dl~~~l~~~~~g~~v~l~v~R~g~~ 67 (100)
T 3i18_A 7 DGVYVMSVKDDVPAAD-VLHAGDLITEIDGNAFK--SSQEFIDYIHSKKVGDTVKINYKHGDKN 67 (100)
T ss_dssp CCEEEEEECTTSGGGG-TCCTTCEEEEETTBCCS--SHHHHHHHHHTSCTTCEEEEEEEETTEE
T ss_pred CCEEEEEeCCCCchHH-CCCCCCEEEEECCEECC--CHHHHHHHHHhCCCCCEEEEEEEECCEE
Confidence 5789999999999995 99999999999999999 89999999886 357799999886554
No 174
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=98.92 E-value=5.5e-10 Score=74.29 Aligned_cols=58 Identities=16% Similarity=0.343 Sum_probs=50.7
Q ss_pred ceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCcc
Q psy16403 75 TIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKEND 135 (177)
Q Consensus 75 ~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~--~~~v~l~v~~~~~~ 135 (177)
+++|..|.++|||++ ||++||+|++|||.++. ++.++..++... ++.+.+++.|++..
T Consensus 2 Gv~V~~V~~~spA~~-GL~~GD~I~~InG~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~~ 61 (91)
T 2kjp_A 2 GIYASSVVENMPAKG-KIEVGDKIISADGKNYQ--SAEKLIDYISSKKAGDKVTLKIEREEKE 61 (91)
T ss_dssp CSSCCCCCCSSCCSS-CCCSSCEEEEETTBCCS--SHHHHHHHHSSCCSSCEECEEEESSSCE
T ss_pred ceEEEEECCCChHHH-cCCCCCEEEEECCEECC--CHHHHHHHHHcCCCCCEEEEEEEECCEE
Confidence 467888999999999 99999999999999999 789999999865 67799999886543
No 175
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=98.91 E-value=4e-09 Score=69.61 Aligned_cols=57 Identities=30% Similarity=0.515 Sum_probs=50.0
Q ss_pred eEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC-CCeEEEEEEeCCc
Q psy16403 76 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS-PAYLHLLVVPKEN 134 (177)
Q Consensus 76 ~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~~~~~ 134 (177)
++|..|.++|+|+++||+.||+|++|||+++. ++.++...+... +..+.+++.|++.
T Consensus 6 ~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~--~~~~~~~~l~~~~g~~v~l~v~R~g~ 63 (91)
T 2zpm_A 6 PVLENVQPNSAASXAGLQAGDRIVXVDGQPLT--QWVTFVMLVRDNPGXSLALEIERQGS 63 (91)
T ss_dssp CBCSEECTTSHHHHTTCCTTCEEEEETTEECC--CHHHHHHHHHHCTTCCEEEEEEETTE
T ss_pred eEEEEECCCChHHhcCCCCCCEEEEECCeEcC--CHHHHHHHHhcCCCCeEEEEEEECCe
Confidence 56788999999999999999999999999999 899999888754 5678999988654
No 176
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=98.90 E-value=2.6e-09 Score=71.26 Aligned_cols=59 Identities=22% Similarity=0.465 Sum_probs=52.0
Q ss_pred CceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCcc
Q psy16403 74 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKEND 135 (177)
Q Consensus 74 ~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~--~~~v~l~v~~~~~~ 135 (177)
.+++|..|.++|||++ ||+.||+|++|||.++. ++.++..++... ++.+.+++.|++..
T Consensus 5 ~Gv~V~~V~~~spA~~-GL~~GD~Il~InG~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~~ 65 (94)
T 2kl1_A 5 KGVYVMSVLPNMPAAG-RLEAGDRIAAIDGQPIN--TSEQIVSYVREKQAGDRVRVTFIRDRKQ 65 (94)
T ss_dssp CCEECCCCCTTSTTBT-TBCTTCEEEEETTBCCC--CHHHHHHHHHHSCTTCCEEEEEEETTEE
T ss_pred CcEEEEEECCCChHHh-CCCCCCEEEEECCEECC--CHHHHHHHHHhCCCCCEEEEEEEECCEE
Confidence 4688999999999999 99999999999999999 788999988864 67899999986543
No 177
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=98.89 E-value=1.4e-08 Score=83.00 Aligned_cols=99 Identities=20% Similarity=0.297 Sum_probs=70.7
Q ss_pred CceeEEEeceeecCchhhhh---hcCCcccceeeee---------ccCCCCceEEEeeCCCCHHhHcCCCCCCEEEEECC
Q psy16403 36 NGFGFTLRHFIVYPPESYTV---LAGDRRLGLRSRC---------MDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNN 103 (177)
Q Consensus 36 ~~~Gf~l~~~~~~~~~~~~~---~~g~~~~g~~~~~---------~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing 103 (177)
.++||.+....+..-..... .+...+.|+.+.. +.....+++|..|.++|||+++||+.||+|++|||
T Consensus 213 ~g~gfaIP~~~~~~~~~~l~~~g~v~~~~lGv~~~~~~~~~a~~~gl~~~~G~~V~~V~~~spA~~aGL~~GDvI~~ing 292 (345)
T 3stj_A 213 VGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNG 292 (345)
T ss_dssp SSCEEEEEHHHHHHHHHHHHHHSSCCCEECCEEEEECCHHHHHHTTCSCCSSEEEEEECTTSHHHHHTCCTTCEECEETT
T ss_pred ceeEEEEehHHHHHHHHHHHhcccccccccceeeEeecHHHHHhcCCCCCceEEEEEeccCChHHHcCCCCCCEEEEECC
Confidence 56778776532221111111 1234455655441 12234689999999999999999999999999999
Q ss_pred EEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCcce
Q psy16403 104 QTIADLPYAEVVQLIQN--SPAYLHLLVVPKENDL 136 (177)
Q Consensus 104 ~~v~~~~~~~~~~~l~~--~~~~v~l~v~~~~~~~ 136 (177)
+++. ++.++...+.. .++.+.|++.|++...
T Consensus 293 ~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~~~ 325 (345)
T 3stj_A 293 KPLN--SFAELRSRIATTEPGTKVKLGLLRNGKPL 325 (345)
T ss_dssp EECS--CHHHHHHHHHTSCTTCEEEEEEEETTEEE
T ss_pred EECC--CHHHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence 9999 89999999976 4788999999976543
No 178
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}
Probab=98.89 E-value=7.3e-09 Score=71.08 Aligned_cols=58 Identities=26% Similarity=0.456 Sum_probs=51.6
Q ss_pred CceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 74 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 74 ~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
.+++|..|.++|||+++||+.||+|++|||+++. ++.++...+. .+..+.+++.|++.
T Consensus 35 ~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~--~~~~~~~~l~-~g~~v~l~v~R~g~ 92 (112)
T 2p3w_A 35 SGIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLV--DSSELQEAVL-TESPLLLEVRRGND 92 (112)
T ss_dssp SSEEEEEECTTSHHHHHTCCTTCEEEEETTEECC--SHHHHHHHHH-HCSSEEEEEEETTE
T ss_pred CCeEEEEECCCChHHHCCCCCCCEEEEECCEECC--CHHHHHHHHh-CCCeEEEEEEECCE
Confidence 4789999999999999999999999999999999 8889988885 46778999988654
No 179
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=98.80 E-value=1.5e-08 Score=68.89 Aligned_cols=58 Identities=19% Similarity=0.146 Sum_probs=48.4
Q ss_pred ceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCc
Q psy16403 75 TIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKEN 134 (177)
Q Consensus 75 ~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~~~~~ 134 (177)
++.|..+.|+|+|+++||++||+|++|||+++. ++.++..++.. .++.+.+++.|++.
T Consensus 38 G~~V~~~~pas~A~~aGl~~GDvI~~ing~~v~--~~~d~~~~~~~~~~g~~v~l~v~R~g~ 97 (105)
T 2i4s_A 38 GYRVSPGKDPVLFESIGLQDGDMAVALNGLDLT--DPNVMNTLFQSMNEMTEMSLTVERDGQ 97 (105)
T ss_dssp EEEEEECSCTHHHHHHTCCTTCEEEEETTEETT--STTHHHHHHHHHTTCSEEEEEEEETTE
T ss_pred EEEEecCCCCCHHHHcCCCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCeEEEEEEECCE
Confidence 456777788889999999999999999999999 77788877764 46788999988654
No 180
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Probab=98.76 E-value=6e-08 Score=80.29 Aligned_cols=91 Identities=16% Similarity=0.283 Sum_probs=68.4
Q ss_pred ceeecCchhhhhh---cCCcccceeeeeccC--CCCceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHH
Q psy16403 44 HFIVYPPESYTVL---AGDRRLGLRSRCMDE--PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLI 118 (177)
Q Consensus 44 ~~~~~~~~~~~~~---~g~~~~g~~~~~~~~--~~~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l 118 (177)
++.++.++++..+ ..+.+.|+++.+... ...+++|..|.++|||+++||++||+|++|||+++.+.+..++..++
T Consensus 64 hs~~~~~~~~~~~~~~~~g~~~giG~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l 143 (388)
T 1fc6_A 64 FTRFLEPSRLAALRRGTAGSVTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLL 143 (388)
T ss_dssp TCEEECHHHHHHHHHCSSSSCBBCSEEEEECTTCSSCEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred cceecCHHHHHHHHHhhcCceEEEEEEEEEeecCCCcEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 3445555555442 245555655554432 23578999999999999999999999999999999987778898888
Q ss_pred Hc-CCCeEEEEEEeCCc
Q psy16403 119 QN-SPAYLHLLVVPKEN 134 (177)
Q Consensus 119 ~~-~~~~v~l~v~~~~~ 134 (177)
+. .+..+.|++.|.+.
T Consensus 144 ~~~~g~~v~l~v~r~g~ 160 (388)
T 1fc6_A 144 QGEADSQVEVVLHAPGA 160 (388)
T ss_dssp CBSTTCEEEEEEEETTE
T ss_pred hcCCCCEEEEEEEeCCC
Confidence 75 35679999988765
No 181
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=98.72 E-value=6.2e-08 Score=78.22 Aligned_cols=73 Identities=22% Similarity=0.222 Sum_probs=58.2
Q ss_pred cccceeeeeccCCCCceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEe-CCcc
Q psy16403 60 RRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVP-KEND 135 (177)
Q Consensus 60 ~~~g~~~~~~~~~~~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~~-~~~~ 135 (177)
.+.|+.+.. .....+++|..|.++|||+++||+.||+|++|||+++. ++.++...+.. .++.+.+++.| ++..
T Consensus 229 ~~lGi~~~~-~~~~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~~g~~ 304 (324)
T 1y8t_A 229 ASLGVQVTN-DKDTLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPIN--SADALVAAVRSKAPGATVALTFQDPSGGS 304 (324)
T ss_dssp EECCEEEES-CSSSSSEEEEEECTTSTTTTTTCCTTCEEEEETTEECC--SHHHHHHHHHTSCTTCEEEEEEECSSCCE
T ss_pred cccceEeee-ccCCCceEEEEECCCChHHHcCCCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCCCE
Confidence 344554432 12246799999999999999999999999999999999 88999988875 36789999988 5543
No 182
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=98.72 E-value=2.2e-07 Score=67.85 Aligned_cols=55 Identities=20% Similarity=0.399 Sum_probs=49.2
Q ss_pred EEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEe
Q psy16403 77 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 131 (177)
Q Consensus 77 ~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~ 131 (177)
+|..|.++|+|+++||+.||+|++|||.++.+.....+...+...+..+.+.+..
T Consensus 110 ~v~~v~~~s~a~~aGl~~GD~I~~ing~~v~~~~~~~v~~~v~r~g~~~~l~v~~ 164 (166)
T 1w9e_A 110 KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP 164 (166)
T ss_dssp EEEEECTTSHHHHTTCCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEEE
T ss_pred EEEEEccCCHHHHcCCCCCCEEEEECCEECCCCChHHHHHHHhhCCCEEEEEEEE
Confidence 7889999999999999999999999999999888888888888888877777654
No 183
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=98.72 E-value=7.9e-08 Score=81.15 Aligned_cols=61 Identities=26% Similarity=0.429 Sum_probs=54.5
Q ss_pred CceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCcce
Q psy16403 74 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKENDL 136 (177)
Q Consensus 74 ~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~~~~~~~ 136 (177)
.+++|..|.++|||+++||+.||+|++|||+++. ++.++...+.. .++.+.+++.|++...
T Consensus 282 ~G~~V~~V~~~spA~~aGL~~GDvI~~vnG~~v~--~~~~l~~~l~~~~~g~~v~l~V~R~g~~~ 344 (451)
T 3pv2_A 282 QGALVSQVNPNSPAELAGLKAGDIITQINDTKIT--QATQVKTTISLLRVGSTVKIIVERDNKPL 344 (451)
T ss_dssp CCEEEEEECTTSHHHHHTCCTTCEEEEETTEECC--SHHHHHHHHHTSCTTCEEEEEEEETTEEE
T ss_pred ceEEEEecCCCChHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence 6899999999999999999999999999999999 88999998875 4678999999976543
No 184
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=98.70 E-value=8.1e-08 Score=80.70 Aligned_cols=62 Identities=24% Similarity=0.382 Sum_probs=54.2
Q ss_pred CCceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCcce
Q psy16403 73 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKENDL 136 (177)
Q Consensus 73 ~~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~~~~~~~ 136 (177)
..+++|..|.++|||+++||+.||+|++|||+++. ++.++...+.. .++.+.+++.|++...
T Consensus 262 ~~G~~V~~V~~~spA~~aGL~~GD~I~~vnG~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~~~ 325 (436)
T 4a8c_A 262 QRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLN--SFAELRSRIATTEPGTKVKLGLLRNGKPL 325 (436)
T ss_pred CcceEEEEECCCChHHHCCCCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence 36899999999999999999999999999999999 88899888874 3678999999876543
No 185
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=98.66 E-value=7.7e-08 Score=77.55 Aligned_cols=61 Identities=21% Similarity=0.445 Sum_probs=54.1
Q ss_pred CCceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCcc
Q psy16403 73 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKEND 135 (177)
Q Consensus 73 ~~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~~~~~~ 135 (177)
..+++|..|.++|||+++||+.||+|++|||+++. ++.++...++. .++.+.|++.|++..
T Consensus 243 ~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~~ 305 (318)
T 1te0_A 243 LQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAI--SALETMDQVAEIRPGSVIPVVVMRDDKQ 305 (318)
T ss_dssp CCCEEEEEECTTSTTTTTCCCTTCCEEEETTEECC--CHHHHHHHHHTSCTTCEEEEEEESSSCE
T ss_pred CCcEEEEEeCCCChHHHCCCCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 36799999999999999999999999999999999 88999999975 467899999986544
No 186
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Probab=98.66 E-value=9.5e-08 Score=67.05 Aligned_cols=57 Identities=19% Similarity=0.315 Sum_probs=49.7
Q ss_pred CceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCc
Q psy16403 74 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKEN 134 (177)
Q Consensus 74 ~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~~~~~ 134 (177)
.+++|..|.++|||+++ |+.||+|++|||+++. ++.++...+.. .++.+.+++ |++.
T Consensus 25 ~gv~V~~V~~~spA~~a-L~~GD~Il~InG~~v~--~~~dl~~~l~~~~~g~~v~l~V-R~g~ 83 (125)
T 2hga_A 25 DGVQIDSVVPGSPASKV-LTPGLVIESINGMPTS--NLTTYSAALKTISVGEVINITT-DQGT 83 (125)
T ss_dssp CCEEEEEECSSSGGGGT-SCTTCEEEEETTEECS--SHHHHHHHHTTCCTTCEEEEEE-TTEE
T ss_pred CceEEEEECCCChHHHh-cCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEE-ECCE
Confidence 57899999999999999 9999999999999999 89999998874 367788888 6443
No 187
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=98.63 E-value=4e-09 Score=87.49 Aligned_cols=56 Identities=23% Similarity=0.395 Sum_probs=0.0
Q ss_pred EEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy16403 77 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK 132 (177)
Q Consensus 77 ~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~ 132 (177)
+|..|.++|+|+++||++||+|++|||.++.+.++++++.+++..++.+.|++++.
T Consensus 318 ~I~~V~~gs~A~~aGL~~GD~Il~VNg~~v~~~s~~~~~~~l~~~~~~v~L~V~p~ 373 (388)
T 3suz_A 318 IICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMPA 373 (388)
T ss_dssp --------------------------------------------------------
T ss_pred EEEEeecCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEec
Confidence 78899999999999999999999999999998899999999998888888888764
No 188
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=98.63 E-value=1.2e-07 Score=76.65 Aligned_cols=59 Identities=25% Similarity=0.412 Sum_probs=53.1
Q ss_pred CceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Q psy16403 74 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135 (177)
Q Consensus 74 ~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~ 135 (177)
.+++|..|.++|||+++||+.||+|++|||+++. ++.++...++. ++.+.|++.|++..
T Consensus 256 ~gv~V~~V~~~spA~~aGl~~GDvI~~ing~~v~--~~~~l~~~l~~-~~~v~l~v~R~g~~ 314 (325)
T 1lcy_A 256 HGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQ--NAEDVYEAVRT-QSQLAVQIRRGRET 314 (325)
T ss_dssp SCEEEEEECTTSHHHHHTCCTTCEEEEETTEECC--SHHHHHHHHTT-CSSEEEEEEETTEE
T ss_pred CCeEEEEeCcCChHHHCCCCCCCEEEEECCEEcC--CHHHHHHHHhC-CCeEEEEEEECCEE
Confidence 5899999999999999999999999999999999 89999999875 57899999886543
No 189
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=98.62 E-value=1.4e-07 Score=79.33 Aligned_cols=61 Identities=31% Similarity=0.463 Sum_probs=55.1
Q ss_pred CceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCcce
Q psy16403 74 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 136 (177)
Q Consensus 74 ~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~~ 136 (177)
.+++|..|.++|+|+++||+.||+|++|||+++. +++++..+++..++.+.|++.|.+...
T Consensus 363 ~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~--~~~~~~~~l~~~~~~v~l~v~R~g~~~ 423 (436)
T 4a8c_A 363 KGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVN--SIAEMRKVLAAKPAIIALQIVRGNESI 423 (436)
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECC--CHHHHHHHHHhCCCeEEEEEEECCEEE
Confidence 4789999999999999999999999999999999 899999999987778899998876543
No 190
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=98.61 E-value=8.8e-08 Score=78.19 Aligned_cols=60 Identities=18% Similarity=0.394 Sum_probs=53.5
Q ss_pred CceEEEeeCCCCHHhHcCCCC-----------CCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCcc
Q psy16403 74 DTIFIKHVRPHSPAAAAGLVP-----------GDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKEND 135 (177)
Q Consensus 74 ~~~~V~~V~~gs~A~~aGl~~-----------GD~I~~Ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~~~~~~ 135 (177)
.+++|..|.++|||+++||+. ||+|++|||+++. +++++...+.. .++.+.+++.|++..
T Consensus 251 ~Gv~V~~V~~~spA~~AGl~~~~~~~~~~l~~GDvI~~ing~~v~--~~~dl~~~l~~~~~g~~v~l~v~R~g~~ 323 (348)
T 3qo6_A 251 SGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVS--NGSDLYRILDQCKVGDEVTVEVLRGDHK 323 (348)
T ss_dssp SSEEEEECCSSSHHHHHTCCCCEECSSSCEECCCEECEETTBCCS--SSHHHHHHHTTCCTTCEEEEEEECSSSE
T ss_pred ceEEEEEecCCChHHHcCCccccccccCCCCCCCEEEEECCEEeC--CHHHHHHHHHhCCCcCEEEEEEEECCEE
Confidence 589999999999999999999 9999999999999 78899999864 367899999986654
No 191
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=98.59 E-value=1.8e-07 Score=71.09 Aligned_cols=59 Identities=20% Similarity=0.363 Sum_probs=47.6
Q ss_pred CceEEEeeCCCCHHhHcCCCCC-CEEEEECCEEcCCCCHHHHHHHH-H-cCCCeEEEEEEeCCc
Q psy16403 74 DTIFIKHVRPHSPAAAAGLVPG-DRVVAVNNQTIADLPYAEVVQLI-Q-NSPAYLHLLVVPKEN 134 (177)
Q Consensus 74 ~~~~V~~V~~gs~A~~aGl~~G-D~I~~Ing~~v~~~~~~~~~~~l-~-~~~~~v~l~v~~~~~ 134 (177)
.+++|..|.++|||++|||+.| |+|++|||+++. ++.++...+ . ..+..+.+++.|...
T Consensus 16 ~G~~V~~V~~~SpA~~AGL~~G~D~I~~ing~~v~--~~~~~~~~~~~~~~g~~v~l~v~R~~~ 77 (209)
T 3rle_A 16 EGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLN--KDNDTLKDLLKANVEKPVKMLIYSSKT 77 (209)
T ss_dssp EEEEEEEECTTSHHHHTTCCTTTEEEEEETTEECC--SSSSHHHHHHHHTTTSCEEEEEEETTT
T ss_pred CEEEEEEECCCCHHHHCCCCcCCeEEEEECCEECc--CHHHHHHHHHhcCCCCEEEEEEEecCC
Confidence 4689999999999999999999 999999999999 444444333 2 346779999988653
No 192
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=98.57 E-value=8.9e-08 Score=72.78 Aligned_cols=59 Identities=27% Similarity=0.452 Sum_probs=51.3
Q ss_pred CceEEEeeCCCCHHhHcCCCC-CCEEEEECCEEcCCCCHHHHHHHHHcC-CCeEEEEEEeCCcc
Q psy16403 74 DTIFIKHVRPHSPAAAAGLVP-GDRVVAVNNQTIADLPYAEVVQLIQNS-PAYLHLLVVPKEND 135 (177)
Q Consensus 74 ~~~~V~~V~~gs~A~~aGl~~-GD~I~~Ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~~~~~~ 135 (177)
.+++|..|.++|||+++||++ ||+|++|||. +. +++++...++.. ++.+.+++.|.+..
T Consensus 112 ~Gv~V~~V~~~spA~~aGl~~~GD~I~~ing~-v~--~~~~l~~~l~~~~g~~v~l~v~r~~~~ 172 (209)
T 3rle_A 112 NVWHVLEVESNSPAALAGLRPHSDYIIGADTV-MN--ESEDLFSLIETHEAKPLKLYVYNTDTD 172 (209)
T ss_dssp SCEEEEEECTTSHHHHHTCCTTTEEEEEESSC-CC--SSSCHHHHHHHTTTSCEEEEEEETTTT
T ss_pred cceEEEEeCCCChHHHCCCCCCCCEEEECCCE-eC--CHHHHHHHHHhCCCCeEEEEEEECCce
Confidence 578999999999999999999 9999999998 77 777888888765 67799999887653
No 193
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=98.55 E-value=1.9e-07 Score=78.75 Aligned_cols=60 Identities=17% Similarity=0.251 Sum_probs=54.2
Q ss_pred CceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Q psy16403 74 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135 (177)
Q Consensus 74 ~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~ 135 (177)
.+++|..|.++|+|+++||++||+|++|||+++. +++++.++++..++.+.|++.|.+..
T Consensus 386 ~Gv~V~~V~~gspA~~aGL~~GD~I~~Vng~~v~--~~~~~~~~l~~~~~~v~l~v~R~g~~ 445 (451)
T 3pv2_A 386 IGVQVVGASENSAGWRAGIRPGDIIISANKKPVT--DVKSLQTIAQEKKKELLVQVLRGPGS 445 (451)
T ss_dssp EEEEEEEECTTSHHHHHTCCTTCEEEEETTEECC--SHHHHHHHTTSSCSCEEEEEEETTEE
T ss_pred CceEEEEECCCCHHHHcCCCCCCEEEEECCEECC--CHHHHHHHHhcCCCeEEEEEEECCEE
Confidence 3689999999999999999999999999999999 89999999988778899999886554
No 194
>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}
Probab=98.43 E-value=3.2e-07 Score=76.37 Aligned_cols=56 Identities=30% Similarity=0.358 Sum_probs=46.9
Q ss_pred eEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 76 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 76 ~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
++|..|.++|||++|||+.||+|++|||.++.+.+ +..+++..+..+.|++.|.+.
T Consensus 92 ~~V~~V~~gsPA~~AGL~~GD~I~~InG~~v~~~~---~~~~l~~~g~~v~l~v~R~g~ 147 (403)
T 3k50_A 92 ALISYVVPGSPAEEAGLQRGHWIMMMNGDYITKKV---ESELLQGSTRQLQIGVYKEVV 147 (403)
T ss_dssp EEEEEECTTSHHHHTTCCTTCEEEEETTBCBCTTT---GGGGTSCSCEEEEEEEEEEEC
T ss_pred EEEEEeCCCChHHHcCCCCCCEEEEECCEEccchh---HHHHhhCCCCEEEEEEEeCCc
Confidence 68899999999999999999999999999999543 556666656678888888654
No 195
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=98.30 E-value=8e-08 Score=77.90 Aligned_cols=59 Identities=27% Similarity=0.503 Sum_probs=0.0
Q ss_pred CceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Q psy16403 74 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135 (177)
Q Consensus 74 ~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~ 135 (177)
.+++|..|.++|||+++||+.||+|++|||+++. ++.++...++. +..+.+++.|.+..
T Consensus 254 ~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~--~~~~~~~~l~~-~~~v~l~v~R~g~~ 312 (332)
T 3num_A 254 SGAYIIEVIPDTPAEAGGLKENDVIISINGQSVV--SANDVSDVIKR-ESTLNMVVRRGNED 312 (332)
T ss_dssp --------------------------------------------------------------
T ss_pred CceEEEEeccCCChHHcCCCCCCEEEEECCEECC--CHHHHHHHHhC-CCeEEEEEEECCEE
Confidence 5788999999999999999999999999999998 78888888865 67788888886543
No 196
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=98.25 E-value=1.9e-06 Score=75.03 Aligned_cols=60 Identities=15% Similarity=0.292 Sum_probs=49.6
Q ss_pred CceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCcce
Q psy16403 74 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKENDL 136 (177)
Q Consensus 74 ~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~~~~~~~ 136 (177)
.+++|..|.++|||+++||++||+|++|||.++. ..++..++.. .++.+.+++.|++...
T Consensus 496 ~gv~V~~V~~~spA~~AGL~~GD~I~aInG~~v~---~~~l~~~l~~~~~g~~v~l~v~R~g~~~ 557 (597)
T 4fgm_A 496 QGLDVLNVYHDESAYHAGLSAGDKIIAIDHLQAT---EQSVKRILERYIPGDTVTIHAFRRDELM 557 (597)
T ss_dssp TEEEEEEECTTSHHHHHTCCTTCEEEEETTEECC---TTTHHHHHTTCCTTCEEEEEEEETTEEE
T ss_pred CeEEEEEeCCCChHHHCCCCCCCEEEEECCEECC---HHHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence 3689999999999999999999999999999995 3456666654 4678999999876543
No 197
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=98.17 E-value=6.2e-07 Score=75.59 Aligned_cols=60 Identities=25% Similarity=0.418 Sum_probs=52.7
Q ss_pred CceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCcc
Q psy16403 74 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKEND 135 (177)
Q Consensus 74 ~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~~~~~~ 135 (177)
.+++|..|.++|||+++||+.||+|++|||+++. ++.++...+.. .++.+.+++.|++..
T Consensus 286 ~G~~V~~V~~gspA~~AGL~~GDvI~~inG~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~~ 347 (448)
T 1ky9_A 286 RGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPIS--SFAALRAQVGTMPVGSKLTLGLLRDGKQ 347 (448)
T ss_dssp CSEECCCCTTCSSSTTTTCCTTCEECBSSSSBCC--SSHHHHHHTTSSBTTCCCEEEEESSSCE
T ss_pred CceEEEEeccCCHHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 5889999999999999999999999999999999 77888888874 467889999886543
No 198
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=98.07 E-value=5e-07 Score=76.19 Aligned_cols=59 Identities=25% Similarity=0.497 Sum_probs=0.0
Q ss_pred CceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Q psy16403 74 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134 (177)
Q Consensus 74 ~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 134 (177)
.+++|..|.++|+|+++||+.||+|++|||+++. +++++.++++.....+.|++.|.+.
T Consensus 383 ~gv~V~~V~~gspA~~aGL~~GDiI~~vng~~v~--~~~~l~~~l~~~~~~v~l~v~R~g~ 441 (448)
T 1ky9_A 383 QGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVK--NIAELRKVLDSKPSVLALNIQRGDS 441 (448)
T ss_dssp -------------------------------------------------------------
T ss_pred CeEEEEEecCCCHHHHcCCCCCCEEEEECCEECC--CHHHHHHHHHcCCCeEEEEEEECCE
Confidence 4688999999999999999999999999999999 7889999988766677788877554
No 199
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=98.06 E-value=1.8e-05 Score=68.06 Aligned_cols=63 Identities=16% Similarity=0.246 Sum_probs=49.1
Q ss_pred CCceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCC--------HHHHHHHHHc--CCCeEEEEEEeCCcce
Q psy16403 73 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLP--------YAEVVQLIQN--SPAYLHLLVVPKENDL 136 (177)
Q Consensus 73 ~~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~--------~~~~~~~l~~--~~~~v~l~v~~~~~~~ 136 (177)
..|++|..|.++|||+++ |+.||+|++|||+.|.... ..++..++.. .++++.++++|++.+.
T Consensus 276 ~~Gv~V~~V~~~spA~~a-l~~GDvI~~idg~~V~~~g~~~~~~~~~~~l~~~v~~~~~Gd~v~l~v~R~Gk~~ 348 (539)
T 4fln_A 276 NEGVLVRRVEPTSDASKV-LKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQKFAGDIAEIGIIRAGEHK 348 (539)
T ss_dssp SBCEEEEEECTTSGGGGT-CCTTCEEEEETTEECBSSSEEECSTTCEEETHHHHHTSCTTCEEEEEEEETTEEE
T ss_pred cCceeeecccCCChHHhC-ccCCCEEEEECCEEeCcCCeeccccchhHHHHHHHHcCCCCCEEEEEEEECCEEE
Confidence 368999999999999887 9999999999999996321 1123445543 4789999999977654
No 200
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=97.88 E-value=2.2e-05 Score=71.84 Aligned_cols=59 Identities=14% Similarity=0.231 Sum_probs=49.3
Q ss_pred CceEEEeeCCC--------CHHhHcC--CCCCCEEEEECCEEcCCCCHHHHHHHHHc-CCCeEEEEEEeCCcc
Q psy16403 74 DTIFIKHVRPH--------SPAAAAG--LVPGDRVVAVNNQTIADLPYAEVVQLIQN-SPAYLHLLVVPKEND 135 (177)
Q Consensus 74 ~~~~V~~V~~g--------s~A~~aG--l~~GD~I~~Ing~~v~~~~~~~~~~~l~~-~~~~v~l~v~~~~~~ 135 (177)
.+++|..|.++ |||+++| |+ ||+|++|||+++.+. .++..+++. .+..+.|++.|.+.+
T Consensus 748 ~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~--~~~~~~~~~~~g~~v~l~v~r~~~~ 817 (1045)
T 1k32_A 748 DHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGAG--SNIYRVLSEKAGTSARIRLSGKGGD 817 (1045)
T ss_dssp TEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBTT--BCHHHHHHTTTTSEEEEEEECSSSC
T ss_pred CEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccch--hhHHHhhcCCCCCEEEEEEECCCCc
Confidence 46889999988 9999999 99 999999999999954 477788875 467799999887643
No 201
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=97.40 E-value=0.00053 Score=58.94 Aligned_cols=49 Identities=12% Similarity=0.146 Sum_probs=45.6
Q ss_pred CceEEEeeCCCCHHhHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCe
Q psy16403 74 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAY 124 (177)
Q Consensus 74 ~~~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~ 124 (177)
.+++|..|.++++|..+|++.||+|++|||++|. +..++.++++.+.+.
T Consensus 415 ~gVvvs~V~~~s~a~~~g~~~gdiI~~vNg~~V~--s~~~l~~~l~~~k~~ 463 (539)
T 4fln_A 415 QIVILSQVLANEVNIGYEDMNNQQVLKFNGIPIR--NIHHLAHLIDMCKDK 463 (539)
T ss_dssp CCEEEEEECCCGGGTTCSSCCSEEEEEETTEECC--SHHHHHHHHHTCCSS
T ss_pred eEEEEEEecCCchhhhcCCCCCCEEEeECCEEcC--CHHHHHHHHHHcCCC
Confidence 5789999999999999999999999999999999 899999999987665
No 202
>3dor_A Protein CT_858, CPAF; mature CPAF, dimer, transferase; 2.20A {Chlamydia trachomatis} PDB: 3dpm_A* 3dpn_A 3dja_A
Probab=36.10 E-value=35 Score=29.47 Aligned_cols=28 Identities=14% Similarity=0.392 Sum_probs=20.6
Q ss_pred eEEEeeCCCCHHhHcCCCCCCEEEEECCEEcC
Q psy16403 76 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIA 107 (177)
Q Consensus 76 ~~V~~V~~gs~A~~aGl~~GD~I~~Ing~~v~ 107 (177)
++|..+.... +++..||.|++|||+++.
T Consensus 98 i~V~dv~~~~----s~I~vGdEIlsING~pv~ 125 (583)
T 3dor_A 98 FYFVDIMTFS----SEIRVGDELLEVDGAPVQ 125 (583)
T ss_dssp EEEEEECSSC----CSSCTTCEEEEETTEEHH
T ss_pred EEEEeccccc----cCCCCCCEEEEECCccHH
Confidence 5665553222 169999999999999986
No 203
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=21.34 E-value=86 Score=18.94 Aligned_cols=16 Identities=25% Similarity=0.445 Sum_probs=10.8
Q ss_pred EEEecCCCCCceeEEEec
Q psy16403 27 LILRRSAALNGFGFTLRH 44 (177)
Q Consensus 27 v~l~r~~~~~~~Gf~l~~ 44 (177)
|...... +||||.-..
T Consensus 7 Vkwfn~~--KGfGFI~~~ 22 (74)
T 2k5n_A 7 ITTWFKD--KGFGFIKDE 22 (74)
T ss_dssp EEEEETT--TTEEEEEES
T ss_pred EEEEECC--CCeEEEecC
Confidence 4555555 899997654
Done!