RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16403
(177 letters)
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 117 bits (294), Expect = 1e-34
Identities = 53/117 (45%), Positives = 73/117 (62%), Gaps = 6/117 (5%)
Query: 23 GPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDR----RLGLRSRCMDEPMDTIFI 78
GP+ + L+R++ GFGFTLRHFIVYPPES + G + R EPMDTIF+
Sbjct: 8 GPKTVTLKRTS--QGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFV 65
Query: 79 KHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135
K V+ PA AGL GDR++ VN +++ Y++V+ LIQNS L L V+PK++
Sbjct: 66 KQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVMPKDSG 122
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel
3 chimera; PDZ domain, PDZ binding, GIRK3 regulation,
early endosomes; 1.68A {Rattus norvegicus} PDB: 3qdo_A
3qgl_A
Length = 107
Score = 96.3 bits (240), Expect = 1e-26
Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 14/117 (11%)
Query: 19 SQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFI 78
S PR + + +S +G+GF +R + + LRS + +
Sbjct: 2 SHGGSPRVVRIVKSE--SGYGFNVRGQVSEGGQ------------LRSINGELYAPLQHV 47
Query: 79 KHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135
V P A AG+ GDR++ VN + + +VV LI+ L L V+ E++
Sbjct: 48 SAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSVESE 104
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 96.2 bits (239), Expect = 3e-26
Identities = 27/129 (20%), Positives = 47/129 (36%), Gaps = 13/129 (10%)
Query: 7 QGENEAPRIKKSSQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRS 66
+ PR S + + ++L++ + GFGF LR P
Sbjct: 11 SQDPLVPRGSGSDYIIKEKTVLLQKKDS-EGFGFVLRGAKAQTP------------IEEF 57
Query: 67 RCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLH 126
+++ V A AGL GD ++ VN Q + + + +VV +I+ L
Sbjct: 58 TPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLM 117
Query: 127 LLVVPKEND 135
+ VV
Sbjct: 118 VKVVMVTRH 126
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 93.2 bits (232), Expect = 2e-25
Identities = 33/114 (28%), Positives = 45/114 (39%), Gaps = 24/114 (21%)
Query: 22 LGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHV 81
+ PR L L + GFGF LR + F+ V
Sbjct: 2 MKPRCLHLEKGP--QGFGFLLR-------------------EEKGLDGRPG---QFLWEV 37
Query: 82 RPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135
P PA AG+ GDR+VAV +++ L + E V IQ + + L VV E D
Sbjct: 38 DPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQGQGSCVSLTVVDPEAD 91
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 93.4 bits (232), Expect = 2e-25
Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 13/114 (11%)
Query: 18 SSQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIF 77
S + + ++L++ + GFGF LR P +
Sbjct: 2 SDYIIKEKTVLLQKKDS-EGFGFVLRGAKAQTPIE------------EFTPTPAFPALQY 48
Query: 78 IKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 131
++ V A AGL GD ++ VN Q + + + +VV +I+ L + VV
Sbjct: 49 LESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVM 102
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein;
PDZ domain, cytoplasm, membrane, polymorphism, protein
binding; 2.70A {Homo sapiens}
Length = 104
Score = 91.8 bits (228), Expect = 6e-25
Identities = 20/108 (18%), Positives = 38/108 (35%), Gaps = 18/108 (16%)
Query: 23 GPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVR 82
+ + + + FGF ++ + + I ++
Sbjct: 15 QRKLVTVEKQDN-ETFGFEIQSYRPQNQNA-----------------CSSEMFTLICKIQ 56
Query: 83 PHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 130
SPA AGL GD + +N + Y +VV LI++S L + +
Sbjct: 57 EDSPAHCAGLQAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIETL 104
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 91.7 bits (228), Expect = 6e-25
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 27/127 (21%)
Query: 19 SQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFI 78
S R +++++ + NG+GF LR I
Sbjct: 2 SSGSSGRVVVIKKGS--NGYGFYLRAGPEQKG-------------------------QII 34
Query: 79 KHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDLLQ 138
K + P SPA AAGL D VVAVN +++ L + VV++I+ LLV+ KE + +
Sbjct: 35 KDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKEAESIY 94
Query: 139 LYFGDTA 145
G ++
Sbjct: 95 SLSGPSS 101
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 91.2 bits (227), Expect = 7e-25
Identities = 32/114 (28%), Positives = 44/114 (38%), Gaps = 27/114 (23%)
Query: 22 LGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHV 81
+ P+ L + NG+GF L P FIK V
Sbjct: 2 MKPKLCRLAKGE--NGYGFHLNAIRGLPG-------------------------SFIKEV 34
Query: 82 RPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135
+ PA AGL D ++ VN + D PY +VV IQ+S + LLV K+
Sbjct: 35 QKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCGKKAQ 88
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 90.9 bits (226), Expect = 1e-24
Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 19/111 (17%)
Query: 25 RNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPH 84
+++ S +GF+LR VY +S D + V
Sbjct: 4 PPIVIHSSG--KKYGFSLRAIRVYMGDS-----------------DVYTVHHVVWSVEDG 44
Query: 85 SPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135
SPA AGL GD + +N +++ L + +VV+L+ S + L EN
Sbjct: 45 SPAQEAGLRAGDLITHINGESVLGLVHMDVVELLLKSGNKISLRTTALENT 95
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 90.4 bits (225), Expect = 1e-24
Identities = 35/115 (30%), Positives = 46/115 (40%), Gaps = 27/115 (23%)
Query: 22 LGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHV 81
L PR LR+ G+GF L D+ +I+ V
Sbjct: 3 LRPRLCHLRKGP--QGYGFNLHS-------------------------DKSRPGQYIRSV 35
Query: 82 RPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 136
P SPAA +GL DR++ VN Q + L +AEVV I+ LLVV L
Sbjct: 36 DPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 90
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 88.9 bits (221), Expect = 8e-24
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 27/112 (24%)
Query: 24 PRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRP 83
PR +++++ + NG+GF LR IK + P
Sbjct: 6 PRVVVIKKGS--NGYGFYLRAGPEQKG-------------------------QIIKDIEP 38
Query: 84 HSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135
SPA AAGL D VVAVN +++ L + VV++I+ LLV+ KE +
Sbjct: 39 GSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKELE 90
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Length = 91
Score = 88.1 bits (219), Expect = 1e-23
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 27/115 (23%)
Query: 21 QLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKH 80
++ PR L + NG+GF L ++ +I+
Sbjct: 1 RMLPRLCCLEKGP--NGYGFHLHG-------------------------EKGKLGQYIRL 33
Query: 81 VRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135
V P SPA AGL+ GDR+V VN + + + +VV I+ + + LLVV E D
Sbjct: 34 VEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETD 88
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding; 1.80A
{Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 86.7 bits (215), Expect = 5e-23
Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 18/108 (16%)
Query: 24 PRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRP 83
+ L L + FGF ++ + ++ E V F+ V
Sbjct: 5 RKVLTLEKGDN-QTFGFEIQTYGLHHREEQRVEMV-----------------TFVARVHE 46
Query: 84 HSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 131
SPA AGL PGD + +VN + + + E+V +I+ S L L +
Sbjct: 47 SSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLETLY 94
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling
protein; 1.80A {Mus musculus}
Length = 106
Score = 85.6 bits (212), Expect = 2e-22
Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 26/113 (23%)
Query: 23 GPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVR 82
GPR L + +GF LR ++ D I+ +
Sbjct: 1 GPRESKLSKQEG-QNYGFFLR--------------IEK-----------DTDGHLIRVIE 34
Query: 83 PHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135
SPA AGL+ GDRV+ +N + +A+VV+L++ S + LLV+ ++
Sbjct: 35 EGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDGDSY 87
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 85.5 bits (212), Expect = 2e-22
Identities = 32/114 (28%), Positives = 45/114 (39%), Gaps = 27/114 (23%)
Query: 22 LGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHV 81
L PR +++ +G+GF L P FI+ V
Sbjct: 8 LRPRLCTMKKGP--SGYGFNLHSDKSKPG-------------------------QFIRSV 40
Query: 82 RPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135
P SPA A+GL DR+V VN + + +VV I+ LLVV +E D
Sbjct: 41 DPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETD 94
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa,
Na/PI cotransporter C- terminal-associated protein,
NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 83.3 bits (206), Expect = 2e-21
Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 26/117 (22%)
Query: 19 SQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFI 78
+ PR L + +GF LR ++ D I
Sbjct: 9 ASTFNPRECKLSKQEG-QNYGFFLR--------------IEK-----------DTDGHLI 42
Query: 79 KHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135
+ + SPA AGL+ GDRV+ +N + +A+VV+L++ S + LLV+ ++
Sbjct: 43 RVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDGDSY 99
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 82.5 bits (204), Expect = 3e-21
Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 27/118 (22%)
Query: 18 SSQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIF 77
S PR L + +GF+L+ ++
Sbjct: 3 SGSSGQPRLCYLVKEG--GSYGFSLKTVQGKKG-------------------------VY 35
Query: 78 IKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135
+ + P A AG++ D ++ VN + + D + EVV+ ++ S + + L+V KE D
Sbjct: 36 MTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKKSGSRVMFLLVDKETD 93
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 78.4 bits (194), Expect = 6e-20
Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 30/108 (27%)
Query: 24 PRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRP 83
R++ + R G+GFTL P + V
Sbjct: 3 VRSVEVARGR--AGYGFTLSG-------------------------QAP---CVLSCVMR 32
Query: 84 HSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 131
SPA GL GD+++AVN + + +VV+LI LH+++
Sbjct: 33 GSPADFVGLRAGDQILAVNEINVKKASHEDVVKLIGKCSGVLHMVIAE 80
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 81.7 bits (201), Expect = 9e-20
Identities = 35/140 (25%), Positives = 49/140 (35%), Gaps = 27/140 (19%)
Query: 19 SQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFI 78
L PR +++ +G+GF L D+ FI
Sbjct: 5 FTMLRPRLCTMKKGP--SGYGFNLHS-------------------------DKSKPGQFI 37
Query: 79 KHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDLLQ 138
+ V P SPA A+GL DR+V VN + + +VV I+ LLVV +E D
Sbjct: 38 RSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETDEFF 97
Query: 139 LYFGDTAHNPETNQRPPCPI 158
N P P
Sbjct: 98 KKCRVIPSQEHLNGPLPVPF 117
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain,
protein, acetylation, cell projection, disease mutation,
membrane; NMR {Homo sapiens}
Length = 128
Score = 78.8 bits (194), Expect = 2e-19
Identities = 35/137 (25%), Positives = 49/137 (35%), Gaps = 27/137 (19%)
Query: 22 LGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHV 81
L PR +++ +G+GF L D+ FI+ V
Sbjct: 8 LRPRLCTMKKGP--SGYGFNLHS-------------------------DKSKPGQFIRSV 40
Query: 82 RPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDLLQLYF 141
P SPA A+GL DR+V VN + + +VV I+ LLVV +E D
Sbjct: 41 DPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETDEFFKKC 100
Query: 142 GDTAHNPETNQRPPCPI 158
N P P
Sbjct: 101 RVIPSQEHLNGPLPVPF 117
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 75.5 bits (186), Expect = 1e-18
Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 30/116 (25%)
Query: 18 SSQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIF 77
+ + +RR +GFGFT+ D P +
Sbjct: 10 DPENGEKLQITIRRGK--DGFGFTICC-------------------------DSP---VR 39
Query: 78 IKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 133
++ V PA AGL D V+ +N + + E+ I++ P+ + LLV
Sbjct: 40 VQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRVS 95
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 73.9 bits (182), Expect = 4e-18
Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 25/106 (23%)
Query: 24 PRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRP 83
+ L + + + FGF++ G G +++K++RP
Sbjct: 7 LHKVTLYKDSGMEDFGFSVA-------------DGLLEKG------------VYVKNIRP 41
Query: 84 HSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
P GL P DR++ VN+ D VV LI S L L++
Sbjct: 42 AGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVI 87
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 73.9 bits (182), Expect = 5e-18
Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 30/107 (28%)
Query: 24 PRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRP 83
R + + R +GFGFT+ D P + ++ V
Sbjct: 4 YRQITIPRGK--DGFGFTICC-------------------------DSP---VRVQAVDS 33
Query: 84 HSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 130
PA AGL D V+ +N + + E+ I++ P+ + LLV
Sbjct: 34 GGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVW 80
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain,
arhgef11, KIAA0380, structural genomics, NPPSFA; NMR
{Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 73.1 bits (180), Expect = 8e-18
Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 31/116 (26%)
Query: 18 SSQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIF 77
S R +I+++ +GFGFT+ GDR +
Sbjct: 3 SGSSGVQRCVIIQKDQ--HGFGFTVS--------------GDR--------------IVL 32
Query: 78 IKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 133
++ VRP A AG+ GDR++ VN + + + EVV+LI++ Y+ L ++
Sbjct: 33 VQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIKSGA-YVALTLLGSS 87
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 72.9 bits (179), Expect = 2e-17
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 19/118 (16%)
Query: 18 SSQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIF 77
SS L ++++ R GFGF + + P
Sbjct: 5 SSGSLQTSDVVIHRKEN-EGFGFVIISSLNRPESG-----------------STITVPHK 46
Query: 78 IKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134
I + SPA L GDR++AVN Q+I ++P+A++V+LI+++ + L ++P+E
Sbjct: 47 IGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQEE 104
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 71.0 bits (174), Expect = 1e-16
Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 31/108 (28%)
Query: 24 PRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRP 83
PR + GFTLR + P + + + P
Sbjct: 16 PRGIHFTVEE--GDLGFTLRG-------------------------NTP---VQVHFLDP 45
Query: 84 HSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA-YLHLLVV 130
H A+ AG GD +V++ L +EV++L+++ + + VV
Sbjct: 46 HCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVV 93
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 69.6 bits (171), Expect = 2e-16
Identities = 26/106 (24%), Positives = 39/106 (36%), Gaps = 27/106 (25%)
Query: 24 PRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRP 83
P ++ LR + +GF L G R P + I V
Sbjct: 9 PHSVTLRGPS---PWGFRLV--------------GGRDFS-------AP---LTISRVHA 41
Query: 84 HSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
S AA A L PGD + A+N ++ + + E I+ +L L V
Sbjct: 42 GSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKGCHDHLTLSV 87
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 68.5 bits (168), Expect = 5e-16
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 49 PPESYTV-LAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIA 107
TV +AG G R + I + V A AA L PGD +VA+N Q+
Sbjct: 4 GSSGLTVDVAGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAE 63
Query: 108 DLPYAEVVQLIQNSPAYLHLLV 129
++ +AE I+ S + L L +
Sbjct: 64 NMLHAEAQSKIRQSASPLRLQL 85
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding,
RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A
{Homo sapiens}
Length = 109
Score = 69.1 bits (169), Expect = 5e-16
Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 31/111 (27%)
Query: 21 QLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKH 80
Q PR++ GFTLR G+ P + +
Sbjct: 21 QSMPRSIRFTAEE--GDLGFTLR--------------GNA-----------P---VQVHF 50
Query: 81 VRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA-YLHLLVV 130
+ P+ A+ AG GD +V++ L +EV++L+++ + + VV
Sbjct: 51 LDPYCSASVAGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVV 101
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 67.8 bits (166), Expect = 1e-15
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 58 GDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQL 117
G + IF+ V SPA + L D ++A+NN + E +
Sbjct: 15 KSLDFGFTIKWDIPG---IFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKEWEEA 71
Query: 118 IQNSPAYLHLLV 129
+ + HL++
Sbjct: 72 MAKAQETGHLVM 83
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 67.7 bits (166), Expect = 1e-15
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 51 ESYTV-LAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADL 109
+S+ V L G G R + + + I + P AA AG+ GD V++++ + L
Sbjct: 3 DSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSL 62
Query: 110 PYAEVVQLIQNSPAYLHLLV 129
+ E I+ L L +
Sbjct: 63 THIEAQNKIRACGERLSLGL 82
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 67.3 bits (165), Expect = 1e-15
Identities = 15/111 (13%), Positives = 36/111 (32%), Gaps = 32/111 (28%)
Query: 22 LGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHV 81
+ PR + + + + GF ++ I +
Sbjct: 3 MDPRTITMHKDST-GHVGFIFKNGK-------------------------------ITSI 30
Query: 82 RPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK 132
S AA GL+ + +N Q + L +++ ++ S + + ++P
Sbjct: 31 VKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA 81
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 67.8 bits (166), Expect = 1e-15
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 50 PESYTV-LAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIAD 108
S V L G G R + + I + P S AAAA L PGD ++A++
Sbjct: 4 GSSGNVVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTES 63
Query: 109 LPYAEVVQLIQNSPAYLHLLV 129
+ +A+ I+ + L L +
Sbjct: 64 MTHADAQDRIKAASYQLCLKI 84
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 96
Score = 67.4 bits (165), Expect = 2e-15
Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 29/107 (27%)
Query: 24 PRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRP 83
+ + + L +GF + P + + V
Sbjct: 9 RHTVKIDKDTLLQDYGFHISE-------------------------SLP---LTVVAVTA 40
Query: 84 HSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 130
A L PGD+++ +NN+ DL + V +++ + L + VV
Sbjct: 41 GGSAHG-KLFPGDQILQMNNEPAEDLSWERAVDILREAEDSLSITVV 86
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog,
phosphorylation, signaling PR LIM domain, PDZ domain;
1.5A {Homo sapiens}
Length = 88
Score = 65.8 bits (161), Expect = 5e-15
Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 51 ESYTV-LAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADL 109
+Y+V L G G R + + + I ++ AA A + GD V++++ +
Sbjct: 3 SNYSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGM 62
Query: 110 PYAEVVQLIQNSPAYLHLLV 129
+ E I+ L++ +
Sbjct: 63 THLEAQNKIKGCTGSLNMTL 82
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein; 1.70A
{Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 65.4 bits (160), Expect = 8e-15
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 52 SYTV-LAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLP 110
+ TV +AG G R + I + V A A L PGD +VA+N ++ +
Sbjct: 3 ALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGML 62
Query: 111 YAEVVQLIQNSPAYLHLLV 129
+AE I+ SP+ L L +
Sbjct: 63 HAEAQSKIRQSPSPLRLQL 81
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 65.3 bits (160), Expect = 8e-15
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 52 SYTV-LAGDRRLGLRSR-CMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADL 109
+Y+V L G G R + D M + I + P S AA + L GD VVA++ +
Sbjct: 2 AYSVTLTGPGPWGFRLQGGKDFNMP-LTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM 60
Query: 110 PYAEVVQLIQNSPAYLHLLV 129
+ E I+++ L L +
Sbjct: 61 THLEAQNKIKSASYNLSLTL 80
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 64.7 bits (158), Expect = 1e-14
Identities = 20/75 (26%), Positives = 31/75 (41%)
Query: 55 VLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEV 114
L G G R + + I V P S AA A L GD + A++ + +++ + E
Sbjct: 8 DLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEA 67
Query: 115 VQLIQNSPAYLHLLV 129
I+ L L V
Sbjct: 68 QNRIKGCTDNLTLTV 82
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 64.3 bits (157), Expect = 3e-14
Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 51 ESYTV-LAGDRRLGLR---SRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTI 106
S +V L G G R + + P + I ++ A+ A + GD V++++ +
Sbjct: 5 SSGSVSLVGPAPWGFRLQGGKDFNMP---LTISSLKDGGKASQAHVRIGDVVLSIDGISA 61
Query: 107 ADLPYAEVVQLIQNSPAYLHLLV 129
+ + E I+ L++ +
Sbjct: 62 QGMTHLEAQNKIKACTGSLNMTL 84
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper
chaperone for superoxide dismutase, neuronal adaptor,
protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 90
Score = 63.2 bits (154), Expect = 6e-14
Identities = 12/55 (21%), Positives = 28/55 (50%)
Query: 77 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 131
I + A G+ G R++ +N Q++ P+ ++V ++ N+ +H+ +P
Sbjct: 34 IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMP 88
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation,
leucine-rich repeat, alternative splicing, cytoplasm,
circletail, coiled coil; 1.30A {Homo sapiens}
Length = 97
Score = 62.7 bits (153), Expect = 9e-14
Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 22/107 (20%)
Query: 24 PRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDT-IFIKHVR 82
L + R G G ++ G + + D IFI V
Sbjct: 4 ELTLTILRQT--GGLGISIA-------------------GGKGSTPYKGDDEGIFISRVS 42
Query: 83 PHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
PAA AG+ GD+++ VN + + E V+ ++ + + + V
Sbjct: 43 EEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRV 89
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; structural genomi consortium, SGC, ATP-binding, cell
junction; 1.60A {Homo sapiens}
Length = 88
Score = 61.9 bits (151), Expect = 1e-13
Identities = 23/113 (20%), Positives = 39/113 (34%), Gaps = 33/113 (29%)
Query: 24 PRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDT-IFIKHVR 82
+ + + GFGFT+ D P +K +
Sbjct: 4 LITVHIVKGP--MGFGFTIA--------------------------DSPGGGGQRVKQIV 35
Query: 83 PHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA--YLHLLVVPKE 133
+ GL GD +V VN + + L + +VV ++ SP + LLV +
Sbjct: 36 D--SPRSRGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLLVQRQT 86
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 62.4 bits (152), Expect = 2e-13
Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 22/107 (20%)
Query: 24 PRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDT-IFIKHVR 82
L + R G G ++ G + + D IFI V
Sbjct: 16 ELTLTILRQT--GGLGISIA-------------------GGKGSTPYKGDDEGIFISRVS 54
Query: 83 PHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
PAA AG+ GD+++ VN + + E V+ ++ + + + V
Sbjct: 55 EEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRV 101
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A
{Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 62.0 bits (151), Expect = 2e-13
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 50 PESYTV--LAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTI 106
YTV LG+ +EP D I I + A G + GDR++A+N+ ++
Sbjct: 4 AIIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSL 63
Query: 107 ADLPYAEVVQLIQNSPAYLHLLVVPKE 133
P +E + L+Q + + L + +
Sbjct: 64 KGKPLSEAIHLLQMAGETVTLKIKKQT 90
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 62.4 bits (152), Expect = 2e-13
Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 23/118 (19%)
Query: 18 SSQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIF 77
Q +G R + +++ + G ++ AG G+ S D P IF
Sbjct: 19 YFQSMGLRTVEMKKGPT-DSLGISI--------------AG----GVGSPLGDVP---IF 56
Query: 78 IKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134
I + P AA L GDR+V + + + + + V L++N+ + + VV +
Sbjct: 57 IAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAGGD 114
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 62.0 bits (151), Expect = 2e-13
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 25/113 (22%)
Query: 18 SSQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIF 77
S R + LRR+ A G GF++R G + + I+
Sbjct: 3 SGSSGEVRLVSLRRAKAHEGLGFSIR--------------GGS---------EHGVG-IY 38
Query: 78 IKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 130
+ V P S A GL GD+++ VN++++A + +AE V+ ++ S L L V
Sbjct: 39 VSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKGSK-KLVLSVY 90
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 61.6 bits (150), Expect = 3e-13
Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 30/114 (26%)
Query: 18 SSQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAG--DRRLGLRSRCMDEPMDT 75
SS ++ + +S A GF++R G + LG
Sbjct: 5 SSGSDIIHSVRVEKSPA-GRLGFSVR--------------GGSEHGLG------------ 37
Query: 76 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
IF+ V S A AGL GD++ VN ++ V+++ +S LH++V
Sbjct: 38 IFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGSAVKVLTSSS-RLHMMV 90
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion;
1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 62.1 bits (151), Expect = 3e-13
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 43 RHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVN 102
H I+ P +GLR ++ IF+ V SPAA GL GD+++ VN
Sbjct: 22 GHMILRPSMKLVKFRKGDSVGLRLAGGNDV--GIFVAGVLEDSPAAKEGLEEGDQILRVN 79
Query: 103 NQTIADLPYAEVVQLIQNSPAYLHLLVV 130
N ++ E V + + P + ++
Sbjct: 80 NVDFTNIIREEAVLFLLDLPKGEEVTIL 107
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 63.6 bits (155), Expect = 4e-13
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 76 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
+ I VRP PA G + PGDR+++V+ + +AE + +++ LL+
Sbjct: 137 VVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLI 191
Score = 59.7 bits (145), Expect = 1e-11
Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 26/114 (22%)
Query: 23 GPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVR 82
G + L + G T+ +G + + ++R
Sbjct: 7 GSTVVELMKKEG-TTLGLTV--------------SGGIDKDGK----------PRVSNLR 41
Query: 83 PHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135
AA + L GD + AVN +A + E++ L++N + L V +
Sbjct: 42 QGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVGERVVLEVEYELPP 95
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein;
1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 61.2 bits (149), Expect = 4e-13
Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 20/110 (18%)
Query: 25 RNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPH 84
+ L ++ FG + G + IFIK + P
Sbjct: 7 HMVTLDKTGK-KSFGI--------------CIVR----GEVKDSPNTKTTGIFIKGIVPD 47
Query: 85 SPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 133
SPA G L GDR++++N + + + V+ LI+ + + L + +
Sbjct: 48 SPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQTFD 97
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 63.2 bits (154), Expect = 5e-13
Identities = 22/132 (16%), Positives = 48/132 (36%), Gaps = 22/132 (16%)
Query: 19 SQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFI 78
S + + L R +G GF++ G +IFI
Sbjct: 1 SGSMEYEEITLERGN--SGLGFSIA-------------------GGTDNPHIGDDPSIFI 39
Query: 79 KHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDLL 137
+ P AA G L D ++ VN + ++ ++ V+ ++ + + + L V+ ++
Sbjct: 40 TKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAE 99
Query: 138 QLYFGDTAHNPE 149
++ P+
Sbjct: 100 KVMEIKLIKGPK 111
Score = 62.1 bits (151), Expect = 1e-12
Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 20/95 (21%)
Query: 36 NGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVP 94
G GF++ G ++I++ + A G L
Sbjct: 111 KGLGFSIA-------------------GGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQI 151
Query: 95 GDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
GD+++AVN+ + D+ + + V ++N+ ++L V
Sbjct: 152 GDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKV 186
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 117
Score = 61.3 bits (149), Expect = 5e-13
Identities = 17/129 (13%), Positives = 41/129 (31%), Gaps = 31/129 (24%)
Query: 8 GENEAPRIKKSSQQLG---PRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGL 64
G + + ++ + PR++ +++ + G ++ + G
Sbjct: 1 GSSGSSGGERRKDRPYVEEPRHVKVQKGS--EPLGISIV--------------SGEKGG- 43
Query: 65 RSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAY 124
I++ V S A AGL GD+++ N + + +I
Sbjct: 44 -----------IYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQQCDT 92
Query: 125 LHLLVVPKE 133
+ +L
Sbjct: 93 ITILAQYNP 101
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 60.8 bits (148), Expect = 6e-13
Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 30/115 (26%)
Query: 17 KSSQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAG--DRRLGLRSRCMDEPMD 74
Q PR + L++ GF +R G +LG
Sbjct: 9 NELTQFLPRIVTLKKPPG-AQLGFNIR--------------GGKASQLG----------- 42
Query: 75 TIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
IFI V P S A AGL GD+V+AVN+ D+ +++ V++++ + + + V
Sbjct: 43 -IFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKTAR-EISMRV 95
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 62.9 bits (153), Expect = 6e-13
Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 62 LGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQN 120
+ + S +P D + I ++ S A G L GD+++A++N + + VQ++Q
Sbjct: 123 ITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQ 182
Query: 121 SPAYLHLLVVPKEN 134
+ L + E+
Sbjct: 183 CEDLVKLKIRKDED 196
Score = 61.7 bits (150), Expect = 2e-12
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 70 DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 128
+ I ++ SPA G L GDRV+A+N D + E QL+++S +
Sbjct: 32 ETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVT 91
Query: 129 VV 130
+
Sbjct: 92 LE 93
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 60.8 bits (148), Expect = 7e-13
Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 27/114 (23%)
Query: 18 SSQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDT-I 76
S Q G ++ L R GFG TL G R D DT +
Sbjct: 6 SGQASGHFSVELVRGY--AGFGLTL--------------GGGR---------DVAGDTPL 40
Query: 77 FIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
++ + PA G L GD V+ +N ++ L +A+ V+ I+ LHL++
Sbjct: 41 AVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVI 94
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 61.0 bits (148), Expect = 8e-13
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 76 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135
IFI HV+P S +A GL GD++V VN ++L + E V ++++S + +V +
Sbjct: 43 IFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISIVAAAGRE 102
Query: 136 LLQ 138
L
Sbjct: 103 LFM 105
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 59.6 bits (145), Expect = 9e-13
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 76 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
IF+K + S AA G + GD V+ +N ++ + LI+ S L ++V
Sbjct: 23 IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVV 77
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 61.8 bits (150), Expect = 9e-13
Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 62 LGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS 121
+GLR + +D IF++ V+ +SPA+ GL GD+V+ +N + A + ++++ +
Sbjct: 18 IGLRLKSIDNG---IFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQA 74
Query: 122 PAYLHLLVV 130
+ +
Sbjct: 75 FGEKITMTI 83
Score = 56.4 bits (136), Expect = 1e-10
Identities = 10/52 (19%), Positives = 24/52 (46%)
Query: 80 HVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 131
+ S AA GL+ + +N Q + L +++ ++ S + + ++P
Sbjct: 113 SIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP 164
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog;
PDZ domain, cellular signaling, structural genomics; NMR
{Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 60.6 bits (147), Expect = 1e-12
Identities = 23/108 (21%), Positives = 36/108 (33%), Gaps = 22/108 (20%)
Query: 24 PRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRP 83
++L GFG L+ G I ++
Sbjct: 16 TTEVVLTADPV-TGFGIQLQ-------------------GSVFATETLSSP-PLISYIEA 54
Query: 84 HSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 130
SPA G L GDRV+A+N D + E QL+++S + +
Sbjct: 55 DSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLE 102
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 60.8 bits (147), Expect = 2e-12
Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 12/107 (11%)
Query: 27 LILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSP 86
+ R GF++ I P G I++ V P
Sbjct: 29 IHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKG------------IYVTRVSEGGP 76
Query: 87 AAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 133
A AGL GD+++ VN + + + + + + + L+V ++
Sbjct: 77 AEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQ 123
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 60.0 bits (145), Expect = 2e-12
Identities = 16/113 (14%), Positives = 42/113 (37%), Gaps = 23/113 (20%)
Query: 28 ILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPA 87
I + A + +GF+L + + ++ + +++ V+ A
Sbjct: 21 IEKSDTAADTYGFSLS-------------SVE----------EDGIRRLYVNSVKETGLA 57
Query: 88 AAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDLLQLY 140
+ GL GD ++ +NN+ L + + + L + P+ + ++
Sbjct: 58 SKKGLKAGDEILEINNRAADALNSSMLKDFLSQPSLGLLVRTYPELEEGVESG 110
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction,
membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 58.9 bits (143), Expect = 3e-12
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 76 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
IF+K + S AA G + GD V+ +N ++ + LI+ S L ++V
Sbjct: 25 IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVV 79
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 59.3 bits (144), Expect = 3e-12
Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 21/116 (18%)
Query: 18 SSQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAG--DRRLGLRSRCMDEPMDT 75
S G R L ++++ G ++ G G DE
Sbjct: 4 GSSGPGLRELCIQKAPG-ERLGISI--------------RGGARGHAGNPRDPTDEG--- 45
Query: 76 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 130
IFI V P A G L G R++ VN Q++ L + E VQL+++ L +LV
Sbjct: 46 IFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVC 101
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 59.4 bits (144), Expect = 3e-12
Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 17/114 (14%)
Query: 18 SSQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIF 77
S PR + + R G ++ + ++ E + IF
Sbjct: 10 FSHWGPPRIVEIFREPN-VSLGISIV---------------GGQTVIKRLKNGEELKGIF 53
Query: 78 IKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 130
IK V SPA L GD+++ V+ + + ++E V+ I+N+ + +V
Sbjct: 54 IKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQ 107
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 59.8 bits (145), Expect = 3e-12
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 76 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 130
I+I V P S A +GL GD+++ VN ++ ++ + E V+L+++S +L L V
Sbjct: 48 IYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKSSR-HLILTVK 101
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter
usage, alternative splicing, cell junction, cell
membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 58.5 bits (142), Expect = 3e-12
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 76 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
IF+K + A G L GD ++ +N ++ + +LI+ S L L+V
Sbjct: 23 IFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVV 77
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 58.8 bits (143), Expect = 3e-12
Identities = 11/55 (20%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 76 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
IF+K + S G + GD+++AV+ + + V++++++ + L +
Sbjct: 35 IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTL 89
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform
B; GOPC PDZ domain, structural protein; NMR {Homo
sapiens}
Length = 103
Score = 58.9 bits (143), Expect = 3e-12
Identities = 25/119 (21%), Positives = 40/119 (33%), Gaps = 26/119 (21%)
Query: 15 IKKSSQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMD 74
+KKS R ++L + G G ++ + P
Sbjct: 1 MKKSQGVGPIRKVLLLKEDH-EGLGISIT---------------------GGKEHGVP-- 36
Query: 75 TIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK 132
I I + P PA G L GD ++AVN + D + E V ++ + VV
Sbjct: 37 -ILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVYV 94
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 58.9 bits (143), Expect = 3e-12
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 17/111 (15%)
Query: 20 QQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIK 79
Q + PR + L R + G ++ G R +G R + IFIK
Sbjct: 1 QSMQPRRVELWREPS-KSLGISIV--------------GGRGMGSRLSNGEVMRG-IFIK 44
Query: 80 HVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
HV SPA G L PGDR+V V+ + D + + V+ I+ + + +V
Sbjct: 45 HVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMV 95
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 58.5 bits (142), Expect = 4e-12
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 70 DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 128
D + I I V A G L GD+++ VN + + E + +++ +P + L
Sbjct: 26 DTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVRLT 85
Query: 129 V 129
+
Sbjct: 86 L 86
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 58.9 bits (143), Expect = 4e-12
Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 17/95 (17%)
Query: 36 NGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVP 94
N G ++ + G+ + I++K V P A + G +
Sbjct: 20 NSLGISVT-------------VLFDKGGVNTSVRHGG---IYVKAVIPQGAAESDGRIHK 63
Query: 95 GDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
GDRV+AVN ++ + + V+ ++N+ +HLL+
Sbjct: 64 GDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLL 98
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 105
Score = 58.9 bits (143), Expect = 4e-12
Identities = 26/114 (22%), Positives = 41/114 (35%), Gaps = 23/114 (20%)
Query: 18 SSQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDT-I 76
SS G L RS G GF++ G + D I
Sbjct: 2 SSGSSGRHVACLARSE--RGLGFSIA-------------------GGKGSTPYRAGDAGI 40
Query: 77 FIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
F+ + A AG L GDRV+++N + + + V L+ + + LL+
Sbjct: 41 FVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLL 94
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 62.3 bits (150), Expect = 4e-12
Identities = 13/59 (22%), Positives = 27/59 (45%)
Query: 76 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134
I + A G+ G R++ +N Q++ + ++VQ + NS +H+ +P
Sbjct: 317 GIICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMPAAM 375
Score = 54.6 bits (130), Expect = 2e-09
Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 62 LGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQN 120
+ + + T+ + ++ PAA +G L GD+++++N ++ LP A +I+
Sbjct: 220 VVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKG 279
Query: 121 SPAYLHLLVV 130
+ +
Sbjct: 280 LKNQTQVKLN 289
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 126
Score = 59.1 bits (143), Expect = 4e-12
Identities = 22/132 (16%), Positives = 40/132 (30%), Gaps = 33/132 (25%)
Query: 2 PPEAKQGENEAPRIKKSSQQLGPRNLI-LRRSAALNGFGFTLRHFIVYPPESYTVLAGDR 60
+K + + + K S L L G G +
Sbjct: 5 SSGSKNEKEQLSKAKASVSSLNKVIQTKLTVGN--LGLGLVVI----------------- 45
Query: 61 RLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQ 119
+ + I H+ AA+ G L PGD +++V + + E ++L+Q
Sbjct: 46 ----------QNGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQ 95
Query: 120 NSPA--YLHLLV 129
N L +
Sbjct: 96 NITIGTVLQIKA 107
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 58.6 bits (142), Expect = 4e-12
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 70 DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 128
+ T I ++ PA +G L GDR+ A+N ++ LP A ++ + + +
Sbjct: 33 GSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVT 92
Query: 129 VV 130
+
Sbjct: 93 LS 94
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 58.5 bits (142), Expect = 4e-12
Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 27/113 (23%)
Query: 18 SSQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIF 77
S Q + + + A GFGF++R G R + MD ++
Sbjct: 6 SGQDFDYFTVDMEKGA--KGFGFSIR--------------GGR---------EYKMD-LY 39
Query: 78 IKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
+ + PA G + GD+++ +N ++ D+ +A ++LI++ + LL+
Sbjct: 40 VLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLL 92
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 58.9 bits (143), Expect = 4e-12
Identities = 22/121 (18%), Positives = 48/121 (39%), Gaps = 24/121 (19%)
Query: 19 SQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFI 78
Q + + + +++ G T+ AG G R D P I++
Sbjct: 20 FQSMHEKVVNIQKDPG-ESLGMTV--------------AG----GASHREWDLP---IYV 57
Query: 79 KHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV-PKENDL 136
V P + G + GD ++ V+ + ++ +E V L++ + + + L + KE +
Sbjct: 58 ISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALEVKEGSI 117
Query: 137 L 137
+
Sbjct: 118 V 118
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 60.7 bits (147), Expect = 5e-12
Identities = 12/74 (16%), Positives = 22/74 (29%), Gaps = 4/74 (5%)
Query: 58 GDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQ 116
+ LGL + I + L GD + N + LP+
Sbjct: 123 AGKELGLSLSPNEIG---CTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYA 179
Query: 117 LIQNSPAYLHLLVV 130
L + + + + V
Sbjct: 180 LFKGANGKVSMEVT 193
Score = 44.9 bits (106), Expect = 3e-06
Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 4/77 (5%)
Query: 69 MDEPMDT-IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTI--ADLPYAEVVQLIQNSPAY 124
+ + T I HV P AA L D + +N I + +V QL +
Sbjct: 39 KNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHTTYEK 98
Query: 125 LHLLVVPKENDLLQLYF 141
L V + + F
Sbjct: 99 AVTLTVFRADPPELEKF 115
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, unknown function; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 58.5 bits (142), Expect = 5e-12
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 76 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
++I+ + P SPAAA G L GDR++ VN ++ L Y V LI++ + LV
Sbjct: 38 LYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLV 92
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 58.0 bits (141), Expect = 6e-12
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 76 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
+ I VRP PA G + PGDR+++V+ + +AE + +++ LL+
Sbjct: 34 VVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEAALLI 88
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 58.6 bits (142), Expect = 6e-12
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 17/113 (15%)
Query: 18 SSQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIF 77
Q + PR + L R + G ++ G R +G R + IF
Sbjct: 19 YFQSMQPRRVELWREPS-KSLGISIV--------------GGRGMGSRLSNGEVMRG-IF 62
Query: 78 IKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
IKHV SPA G L PGDR+V V+ + D + + V+ I+ + + +V
Sbjct: 63 IKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMV 115
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 58.6 bits (142), Expect = 7e-12
Identities = 17/114 (14%), Positives = 39/114 (34%), Gaps = 25/114 (21%)
Query: 23 GPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVR 82
GP + + ++ + G +L I I ++
Sbjct: 15 GPLMVEIVKTPG-SALGISLT-----------------------TTSLRNKSVITIDRIK 50
Query: 83 PHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135
P S +G L PGD +++++ ++ E +L+ + + L ++P
Sbjct: 51 PASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEILPVPQS 104
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 58.1 bits (141), Expect = 7e-12
Identities = 15/55 (27%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 76 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
I++K + P S AA G + P D+++ V++ + + ++VV++++N+ + LL+
Sbjct: 46 IYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRNAGNPVRLLL 100
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 58.6 bits (142), Expect = 8e-12
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 76 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 133
I++K V P S A G + D++VAV+ I +VV++++N+ +HL +V ++
Sbjct: 48 IYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVRRK 106
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; transferase, STRU genomics, structural genomics
consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo
sapiens}
Length = 112
Score = 58.1 bits (141), Expect = 9e-12
Identities = 11/55 (20%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 76 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
+++ + PA +G + GD ++ +N +T ++ ++ ++LI+N + L +
Sbjct: 51 LYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLFL 105
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 58.2 bits (141), Expect = 1e-11
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 70 DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 128
D +IF+ + P PAAA G + GD ++ +NNQ + + +I+ +P+ + L+
Sbjct: 47 DRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLV 106
Query: 129 VVPKENDLLQL 139
+ E+ + Q+
Sbjct: 107 FIRNEDAVNQM 117
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; PDZ, E6 binding, tumor suppressor, peptide
binding protein; 2.15A {Mus musculus}
Length = 85
Score = 56.9 bits (138), Expect = 1e-11
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 58 GDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQ 116
R G DEP + + IK + PAA G + GD +V+VN+ + +A+VV+
Sbjct: 9 SSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVK 68
Query: 117 LIQNSPA--YLHLLV 129
+ Q+ P + L +
Sbjct: 69 IFQSIPIGASVDLEL 83
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 57.9 bits (140), Expect = 1e-11
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 76 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134
+I + P A G L+ G +V+ N + Y EV +I + V N
Sbjct: 51 AYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLDLN 110
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 57.3 bits (139), Expect = 1e-11
Identities = 20/107 (18%), Positives = 42/107 (39%), Gaps = 28/107 (26%)
Query: 24 PRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRP 83
PR +++ R + G GF + G+ G IFI +
Sbjct: 12 PRRIVIHRGS--TGLGFNIV-------------GGEXGEG------------IFISFILA 44
Query: 84 HSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
PA +G L GD++++VN + + + + ++N+ + ++
Sbjct: 45 GGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIA 91
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 56.8 bits (138), Expect = 2e-11
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 76 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
I++K V P A + G + GDRV+AVN ++ + + V+ ++N+ +HLL+
Sbjct: 35 IYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLL 89
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 57.4 bits (139), Expect = 2e-11
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 70 DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 128
D P++ I I V AA G L GD+++ VN + + + E + ++ +P + L+
Sbjct: 39 DTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQKVRLV 98
Query: 129 V 129
V
Sbjct: 99 V 99
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 57.0 bits (138), Expect = 2e-11
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 47 VYPPESYTV--LAGDRRLGLRSRCMDEPMDT----IFIKHVRPHSPAAAAG-LVPGDRVV 99
++ PE V + + LG +P+D I I+ + A +G L+PGDR+V
Sbjct: 11 LWSPEVKIVELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLV 70
Query: 100 AVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 130
+VN + + AE V++++ P L L +
Sbjct: 71 SVNEYCLDNTSLAEAVEILKAVPPGLVHLGI 101
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 57.1 bits (138), Expect = 2e-11
Identities = 10/62 (16%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 70 DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 128
D I + V P+ A+ G + G+ V+++N +++ + + + +++ + +
Sbjct: 38 DLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAV 97
Query: 129 VV 130
+V
Sbjct: 98 IV 99
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 57.1 bits (138), Expect = 2e-11
Identities = 27/130 (20%), Positives = 43/130 (33%), Gaps = 34/130 (26%)
Query: 2 PPEAKQGENEAPRIKKSSQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRR 61
E + EN + G R ++L + G G ++
Sbjct: 14 HIEGRHMENLYFQ--------GIRKVLLLKEDH-EGLGISIT------------------ 46
Query: 62 LGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQN 120
G + P I I + P PA G L GD ++AVN + D + E V ++
Sbjct: 47 -G--GKEHGVP---ILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQ 100
Query: 121 SPAYLHLLVV 130
+ VV
Sbjct: 101 QRGEIEFEVV 110
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 56.6 bits (137), Expect = 2e-11
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 4/89 (4%)
Query: 49 PPESYTV--LAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQT 105
+ V + G R DEP I I V A G L PGD +V V+
Sbjct: 7 GYKELDVHLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIP 66
Query: 106 IADLPYAEVVQLIQNSPAYLHL-LVVPKE 133
+A + V+ L+ ++ + L V ++
Sbjct: 67 VAGKTHRYVIDLMHHAARNGQVNLTVRRK 95
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus musculus}
SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 56.1 bits (136), Expect = 3e-11
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 76 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
I I + A L GD +++VN + ++ + E VQ ++ + + L V
Sbjct: 32 ILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEV 86
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 56.6 bits (137), Expect = 3e-11
Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 22/107 (20%)
Query: 24 PRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRP 83
+ L R +G GF + G G + + I++ ++
Sbjct: 8 EEEINLTRGP--SGLGFNI--------------VG----GTDQQYVSNDSG-IYVSRIKE 46
Query: 84 HSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
+ AA G L GD++++VN Q + +L + + V L +N+ + L V
Sbjct: 47 NGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRV 93
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 56.6 bits (137), Expect = 3e-11
Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 19/108 (17%)
Query: 24 PRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRP 83
L+L R + GF + G + E IF+ +
Sbjct: 9 SLTLVLHRDS--GSLGFNII-------------GGRPSVDNHDGSSSEG---IFVSKIVD 50
Query: 84 HSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 130
PAA G L DR++ VN + ++ + + V+ + + + + V+
Sbjct: 51 SGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVL 98
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 56.1 bits (136), Expect = 3e-11
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 76 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
I+I + A G L GDR++AVNN + D+ + E V ++N+ ++L V
Sbjct: 35 IYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKV 89
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 56.2 bits (136), Expect = 4e-11
Identities = 10/55 (18%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 76 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
IF+K V A G + D++V V+ ++ + +++N+ + ++
Sbjct: 42 IFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVI 96
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide
binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 55.9 bits (135), Expect = 4e-11
Identities = 14/84 (16%), Positives = 25/84 (29%), Gaps = 7/84 (8%)
Query: 51 ESYTVL---AGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTI 106
E + V + LGL + I + L GD + N +
Sbjct: 2 EKFNVDLMKKAGKELGLSLSPNEIG---CTIADLIQGQYPEIDSKLQRGDIITKFNGDAL 58
Query: 107 ADLPYAEVVQLIQNSPAYLHLLVV 130
LP+ L + + + + V
Sbjct: 59 EGLPFQVCYALFKGANGKVSMEVT 82
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 56.2 bits (136), Expect = 4e-11
Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 58 GDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQ 116
LG + ++ + P A G L GD ++ + + + +V Q
Sbjct: 24 DGSGLGFGIVGGKTS--GVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQ 81
Query: 117 LIQNSPAYLHLLV 129
+++N + +LV
Sbjct: 82 VLRNCGNSVRMLV 94
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide
binding protein; 1.54A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 56.3 bits (136), Expect = 5e-11
Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 49 PPESYTV--LAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQT 105
P E + G LG ++ IFI + PA +G L GD++++VN
Sbjct: 12 PREPRRIVIHRGSTGLGFNIVGGEDGEG-IFISFILAGGPADLSGELRKGDQILSVNGVD 70
Query: 106 IADLPYAEVVQLIQNSPAYLHLLV 129
+ + + + ++N+ + ++
Sbjct: 71 LRNASHEQAAIALKNAGQTVTIIA 94
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 56.3 bits (136), Expect = 5e-11
Identities = 23/114 (20%), Positives = 46/114 (40%), Gaps = 22/114 (19%)
Query: 17 KSSQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTI 76
+ + + L R +G GF + G G + + I
Sbjct: 11 RVDYLVTEEEINLTRGP--SGLGFNIV--------------G----GTDQQYVSNDSG-I 49
Query: 77 FIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
++ ++ + AA G L GD++++VN Q + +L + + V L +N+ + L V
Sbjct: 50 YVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRV 103
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 56.3 bits (136), Expect = 5e-11
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 76 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL-LVVPKE 133
I++K++ P A G L GDR++ VN + EVV L++++ + L+V ++
Sbjct: 60 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQ 119
Query: 134 ND 135
D
Sbjct: 120 ED 121
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 56.3 bits (136), Expect = 5e-11
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 58 GDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQ 116
+ G DEP + + +K V P PAA G + GD +V +N + +A+VV+
Sbjct: 28 SNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVK 87
Query: 117 LIQNSPAYLHL-LVVPKENDLLQLYFGDTAHNPET 150
L Q+ P + LV+ + L P +
Sbjct: 88 LFQSVPIGQSVNLVLCRGYPLPFDPEDPANSGPSS 122
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 113
Score = 55.8 bits (135), Expect = 5e-11
Identities = 20/107 (18%), Positives = 41/107 (38%), Gaps = 28/107 (26%)
Query: 24 PRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRP 83
PR +IL + + G GF + G+ G IF+ +
Sbjct: 16 PRKIILHKGS--TGLGFNIVG-------------GEDGEG------------IFVSFILA 48
Query: 84 HSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
PA +G L GDR+++VN + + + + ++ + + ++
Sbjct: 49 GGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVA 95
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 56.4 bits (136), Expect = 6e-11
Identities = 22/124 (17%), Positives = 40/124 (32%), Gaps = 16/124 (12%)
Query: 9 ENEAPRIKKSSQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRC 68
+ I R + L + GF +R + +
Sbjct: 15 RPVSSIIDVDILPETHRRVRLCKYGTEKPLGFYIR--------------DGSSVRVTPHG 60
Query: 69 MDEPMDTIFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 127
E + IFI + P A + GL+ D V+ VN ++ +V ++ + L +
Sbjct: 61 -LEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLII 119
Query: 128 LVVP 131
V P
Sbjct: 120 TVRP 123
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding
protein, membrane, sensory transduction, vision; 1.55A
{Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Length = 96
Score = 55.4 bits (134), Expect = 6e-11
Identities = 12/70 (17%), Positives = 21/70 (30%), Gaps = 4/70 (5%)
Query: 62 LGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQN 120
LGL + I + L GD + N + LP+ L +
Sbjct: 22 LGLSLSPNEIG---CTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKG 78
Query: 121 SPAYLHLLVV 130
+ + + V
Sbjct: 79 ANGKVSMEVT 88
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 55.9 bits (135), Expect = 7e-11
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 70 DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 128
D P+ + + V A G +V GD ++A+N + + D AE +Q +
Sbjct: 39 DSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDW 98
Query: 129 V 129
+
Sbjct: 99 I 99
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 55.4 bits (134), Expect = 7e-11
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 76 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
+FI + AA G L DRV+A+N + Q+IQ S ++L +
Sbjct: 31 VFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGERVNLTI 85
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 55.8 bits (135), Expect = 7e-11
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 24/109 (22%)
Query: 23 GPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVR 82
+++ L R +G GF++ G G S D P I++K V
Sbjct: 25 QCKSITLERGP--DGLGFSI--------------VG----GYGSPHGDLP---IYVKTVF 61
Query: 83 PHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 130
A+ G L GD+++AVN Q++ + + E V +++ + + L+V+
Sbjct: 62 AKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVL 110
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 57.3 bits (138), Expect = 8e-11
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 76 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
+FI H+ A + GL GD +V +N +I+ + EV+ LI+ + + V
Sbjct: 112 LFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRTEKT-VSIKV 164
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 55.0 bits (133), Expect = 9e-11
Identities = 14/55 (25%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 76 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
I++ + A G L GD+++AVN+ ++ ++ + E V ++N+ +++L V
Sbjct: 35 IYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYLKV 89
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics,
alternative splicing, cell cycle, cell division, cell
junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Length = 111
Score = 55.0 bits (133), Expect = 1e-10
Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 26/121 (21%)
Query: 18 SSQQLGPRNLI-LRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTI 76
+++++G R I L++ G GF++ + P I
Sbjct: 5 NTKKVGKRLNIQLKKGT--EGLGFSI--------------TS----RDVTIGGSAP---I 41
Query: 77 FIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL-LVVPKEN 134
++K++ P A G L GDR++ VN +A EVV L++++ + L+V ++
Sbjct: 42 YVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQE 101
Query: 135 D 135
+
Sbjct: 102 E 102
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A {Homo
sapiens}
Length = 95
Score = 54.7 bits (132), Expect = 1e-10
Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 76 IFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL---LVVP 131
FIK ++ + + GD + ++N + I + +V + ++ L+ P
Sbjct: 30 AFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKLIEP 89
Query: 132 KE 133
K+
Sbjct: 90 KK 91
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 55.2 bits (133), Expect = 1e-10
Identities = 23/114 (20%), Positives = 41/114 (35%), Gaps = 26/114 (22%)
Query: 17 KSSQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTI 76
Q + P + L++ A N G ++ G C +
Sbjct: 18 LYFQSMVPGKVTLQKDAQ-NLIGISIG-------------------GGAQYCPC-----L 52
Query: 77 FIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
+I V ++PAA G + GD + VN ++I EV ++IQ + +
Sbjct: 53 YIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 106
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 54.2 bits (131), Expect = 2e-10
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 58 GDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQ 116
+ G R +EP + I+I H+ P A G L GD +++V+ + + VVQ
Sbjct: 11 KETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQ 70
Query: 117 LIQNSPAYLHL-LVV 130
L+Q + H+ L V
Sbjct: 71 LMQQAAKQGHVNLTV 85
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 54.7 bits (132), Expect = 2e-10
Identities = 10/55 (18%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 76 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
IF+K V A G + D +V V+ ++ + + +++N+ + ++
Sbjct: 37 IFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMI 91
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 54.3 bits (131), Expect = 2e-10
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 49 PPESYTV-LAGDRRLGLR---SRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNN 103
PE TV L +GL ++ + I++K V A G L GD++++V+
Sbjct: 9 EPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 68
Query: 104 QTIADLPYAEVVQLIQNSPAYLHLLV 129
+++ L +L+ + + + L V
Sbjct: 69 RSLVGLSQERAAELMTRTSSVVTLEV 94
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 53.9 bits (130), Expect = 2e-10
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 69 MDEPMDTIFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 127
DE I + + A +GL+ GD + VN + D E++Q++ S +
Sbjct: 23 KDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGAITF 82
Query: 128 LVVPKEND 135
++P +
Sbjct: 83 KIIPGSKE 90
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 54.7 bits (132), Expect = 2e-10
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 76 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
I++ + A G L GDR++ VNN ++ ++ + E V +++N+ ++L V
Sbjct: 56 IYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKV 110
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 54.5 bits (131), Expect = 2e-10
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 61 RLGLRSRCMDEPMDTIFIKHVRPHSPAAAA--GLVPGDRVVAVNNQTIADLPYAEVVQLI 118
R G + + + + V P +PA L GD+VV +N + IA+ + +VV I
Sbjct: 28 RFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFI 87
Query: 119 QNSPAYLHLLVV 130
+ S ++
Sbjct: 88 KASCERHSGELM 99
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 93
Score = 53.8 bits (130), Expect = 2e-10
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 76 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 130
I+I V P A G L GD++++VN ++ + + V+L++ + + L+V
Sbjct: 32 IYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVR 87
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 53.9 bits (130), Expect = 2e-10
Identities = 8/77 (10%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 58 GDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQ 116
+ +G+ + ++ + + + G + GD ++ +N + + ++ +
Sbjct: 22 TEEPMGICLKLNEK--QSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQK 79
Query: 117 LIQNSPAYLHLLVVPKE 133
++ + + L V+P +
Sbjct: 80 AMKETKGMISLKVIPNQ 96
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction,
structural genom structural genomics consortium, SGC,
signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A
3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Length = 102
Score = 53.9 bits (130), Expect = 2e-10
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 76 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
IFI + P AA G L D V+ VN ++++ ++ V+ ++ + + L+V
Sbjct: 36 IFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEAGPVVRLVV 90
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 113
Score = 54.0 bits (130), Expect = 3e-10
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Query: 59 DRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQL 117
D LG R + + I + A +G L GD V+ +N I EV L
Sbjct: 36 DIPLGATVRNEMDS---VIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDL 92
Query: 118 IQNSPAYLHLLVVPKEN 134
+ + L +++P
Sbjct: 93 LSDMHGTLTFVLIPSSG 109
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high
affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB:
2h2c_A 2h3m_A 2rrm_A
Length = 107
Score = 53.5 bits (129), Expect = 4e-10
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 76 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
I I V PA L DRV VN ++ ++ +A VQ ++ S + +
Sbjct: 41 IVISDVLKGGPAEG-QLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITI 93
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens} PDB:
3nfl_A 2vph_A
Length = 107
Score = 53.7 bits (129), Expect = 4e-10
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 76 IFIKHVRPHSPAAAA--GLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 130
+ + V P +PA L GD+VV +N + IA+ + +VV I+ S ++
Sbjct: 45 VIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELM 101
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1
PDB: 1qav_B
Length = 112
Score = 53.6 bits (129), Expect = 4e-10
Identities = 12/56 (21%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 76 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 130
+ I + A +G + GD ++AVN++ + DL Y +++++ + H++++
Sbjct: 28 VIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLI 83
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight junctions,
PATJ, structural genomics; NMR {Homo sapiens}
Length = 128
Score = 53.6 bits (129), Expect = 5e-10
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 76 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIA-DLPYAEVVQLIQNSPAYLHLLVV 130
IF+K V+P S A L D+++A+N+ + ++ + + + L+Q + L L+V
Sbjct: 56 IFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLIVA 112
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 56.5 bits (135), Expect = 5e-10
Identities = 24/177 (13%), Positives = 55/177 (31%), Gaps = 20/177 (11%)
Query: 2 PPEAKQGENEAPRIKKSSQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRR 61
PP + + + + +G GF++
Sbjct: 36 PPVIVNTDTLEAPGYVNGTEGEMEYEEITLERGNSGLGFSIA------------------ 77
Query: 62 LGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQN 120
G +IFI + P AA G L D ++ VN + ++ ++ V+ ++
Sbjct: 78 -GGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKE 136
Query: 121 SPAYLHLLVVPKENDLLQLYFGDTAHNPETNQRPPCPIYQNVWEAEQDQLYARRASE 177
+ + + L V+ ++ ++ P+ N + +Y + E
Sbjct: 137 AGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIE 193
Score = 48.7 bits (115), Expect = 2e-07
Identities = 17/115 (14%), Positives = 42/115 (36%), Gaps = 2/115 (1%)
Query: 58 GDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQ 116
G LG + E + IFI + PA +G + GD++++VN + + + +
Sbjct: 316 GSTGLGF-NIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAI 374
Query: 117 LIQNSPAYLHLLVVPKENDLLQLYFGDTAHNPETNQRPPCPIYQNVWEAEQDQLY 171
++N+ + ++ K + + + ++ + Y
Sbjct: 375 ALKNAGQTVTIIAQYKPEEYSRFEAKIHDLREQLMNSSLGSGTASLRSNPKRGFY 429
Score = 43.4 bits (101), Expect = 2e-05
Identities = 22/139 (15%), Positives = 50/139 (35%), Gaps = 6/139 (4%)
Query: 28 ILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGL-----RSRCMDEPMDTIFIKHVR 82
L+ + ++ R ++ G + LG ++I++ +
Sbjct: 133 ALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKII 192
Query: 83 PHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDLLQLYF 141
A G + GD+++AVN+ + D+ + + V ++N+ ++L V N L +
Sbjct: 193 EGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSNAYLSDSY 252
Query: 142 GDTAHNPETNQRPPCPIYQ 160
+Q I
Sbjct: 253 APPDITTSYSQHLDNEISH 271
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 53.3 bits (128), Expect = 7e-10
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 58 GDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQ 116
R G DEP + + IK + PAA G + GD +V+VN+ + +A+VV+
Sbjct: 27 SSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVK 86
Query: 117 LIQNSPA--YLHLLV 129
+ Q+ P + L +
Sbjct: 87 IFQSIPIGASVDLEL 101
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 52.8 bits (127), Expect = 9e-10
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 76 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
I I V P PA L DRVV VN + D+ ++ VQ ++ S ++V
Sbjct: 48 IVISDVLPGGPADG-LLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVV 100
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 51.9 bits (125), Expect = 1e-09
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 76 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
+F+ + A A G L+ GD+++ VN + + + V L++ S + L V
Sbjct: 31 VFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTLEV 85
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 52.0 bits (125), Expect = 1e-09
Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Query: 70 DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 128
+ I ++ A G L G ++ VN T+ + E ++I +
Sbjct: 28 NTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRD 87
Query: 129 VV 130
+
Sbjct: 88 YI 89
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 51.9 bits (124), Expect = 1e-09
Identities = 16/104 (15%), Positives = 38/104 (36%), Gaps = 23/104 (22%)
Query: 28 ILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPA 87
I + A + +GF+L + + ++ + +++ V+ A
Sbjct: 12 IEKSDTAADTYGFSLS-------------SVE----------EDGIRRLYVNSVKETGLA 48
Query: 88 AAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 131
+ GL GD ++ +NN+ L + + + L + P
Sbjct: 49 SKKGLKAGDEILEINNRAADALNSSMLKDFLSQPSLGLLVRTYP 92
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 52.5 bits (126), Expect = 1e-09
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 76 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
++I V ++PAA G + GD + VN ++I EV ++IQ + +
Sbjct: 47 LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 101
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 100
Score = 52.0 bits (125), Expect = 1e-09
Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 49 PPESYTV-LAGDRRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTI 106
+ V L G G + E + + + + AA + + GD +V +N +
Sbjct: 9 SFQYVPVQLQGGAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPL 68
Query: 107 ADLPYAEVVQLIQNSPAYLHLLV 129
E + LI+ S L L+V
Sbjct: 69 YGS-RQEALILIKGSFRILKLIV 90
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 52.5 bits (126), Expect = 2e-09
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 76 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL-LVVPKE 133
FI V+ S A G L PGD V+ N + + + EV +I S + LVV +
Sbjct: 67 AFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRS 126
Query: 134 N 134
Sbjct: 127 G 127
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein,
PDZ domain, hydrolase, inner membrane, membrane,
metal-binding; HET: MLY MSE; 0.98A {Escherichia coli}
PDB: 3id2_A 3id3_A 3id4_A
Length = 91
Score = 51.3 bits (123), Expect = 2e-09
Identities = 20/68 (29%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 72 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 131
P++ + +++V+P+S A+ AGL GDR+V V+ Q + + V L++++P L +
Sbjct: 3 PIEPV-LENVQPNSAASXAGLQAGDRIVXVDGQPLTQ--WVTFVMLVRDNPGXSLALEIE 59
Query: 132 KENDLLQL 139
++ L L
Sbjct: 60 RQGSPLSL 67
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 52.1 bits (125), Expect = 2e-09
Identities = 9/60 (15%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 76 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134
+ I + + + + + PGD ++ + + L E +I+ P +V+ +++
Sbjct: 59 LTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKS 118
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling protein;
NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 51.3 bits (123), Expect = 2e-09
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 10/90 (11%)
Query: 49 PPESYTV-LAGDRRLGL--------RSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVV 99
+ V + D LG R D IF+ V+P PA+ L PGD+++
Sbjct: 9 AKQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKII 67
Query: 100 AVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
N + ++ + + V L++ + L++
Sbjct: 68 QANGYSFINIEHGQAVSLLKTFQNTVELII 97
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 96
Score = 51.2 bits (123), Expect = 2e-09
Identities = 26/114 (22%), Positives = 42/114 (36%), Gaps = 33/114 (28%)
Query: 18 SSQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIF 77
SS Q L + + A GFGFT+ D G
Sbjct: 5 SSGQAELMTLTIVKGA--QGFGFTIA---------------DSPTG------------QR 35
Query: 78 IKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA--YLHLLV 129
+K + GL GD +V +N Q + +L + EVV ++++ P L++
Sbjct: 36 VKQILD--IQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLII 87
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric
oxide synthase, oxidoreductase; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 127
Score = 51.8 bits (124), Expect = 3e-09
Identities = 12/56 (21%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 76 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 130
+ I + A +G + GD ++AVN++ + DL Y +++++ + H++++
Sbjct: 35 VIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLI 90
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 52.3 bits (125), Expect = 3e-09
Identities = 10/55 (18%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 76 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
IF+K V A G + D +V V+ ++ + + +++N+ + ++
Sbjct: 113 IFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMI 167
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 50.5 bits (121), Expect = 4e-09
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 63 GLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP 122
G R D IF+ V+P PA+ L PGD+++ N + ++ + + V L++
Sbjct: 24 GGRGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ 82
Query: 123 AYLHLLV 129
+ L++
Sbjct: 83 NTVELII 89
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 50.5 bits (121), Expect = 5e-09
Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 76 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNS 121
++I V P G L PGD++V++N +++ + + E +I +
Sbjct: 43 VYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRA 89
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 49.3 bits (118), Expect = 1e-08
Identities = 9/74 (12%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 59 DRRLGLRSRCMDEPMDTIFIKHVRPHSPAA-AAGLVPGDRVVAVNNQTIADLPYAEVVQL 117
D +G+ + + + + + L GD + +N ++A+ ++ ++
Sbjct: 12 DEPMGITLKMNEL--NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKM 69
Query: 118 IQNSPAYLHLLVVP 131
++ + +VP
Sbjct: 70 LREMRGSITFKIVP 83
>2o2t_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 2.70A
{Homo sapiens}
Length = 117
Score = 49.7 bits (119), Expect = 1e-08
Identities = 12/56 (21%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 76 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIAD-LPYAEVVQLIQNSPAYLHLLV 129
IF++ ++ S A G L D+++A+N Q + + + + + ++Q + + L++
Sbjct: 51 IFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVI 106
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics,
PDZ domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB:
2koh_A 2k1z_A 2k20_A
Length = 127
Score = 49.4 bits (118), Expect = 2e-08
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 76 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL------L 128
IFIK + A G L D+++AVN +T+ E ++ ++ S + L
Sbjct: 57 IFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQL 116
Query: 129 VVPKEND 135
V+ + +
Sbjct: 117 VILRRSG 123
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Length = 108
Score = 47.8 bits (114), Expect = 5e-08
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 70 DEPMDT-IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQN---SPAY 124
+E D I+I + AA G + PGD ++ VN+ ++ + V+++++ P
Sbjct: 28 NERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGP 87
Query: 125 LHLLVV 130
+ L V
Sbjct: 88 IVLTVA 93
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 48.9 bits (117), Expect = 2e-07
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 57 AGDRRLGLRSRCMDEPMDT--IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEV 114
+ G+ M + + +V+ +PAA GL GD ++ N Q + ++ AE+
Sbjct: 364 SSSIFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNI--AEL 421
Query: 115 VQLIQNSPAYLHLLV 129
+++ + P+ L L +
Sbjct: 422 RKVLDSKPSVLALNI 436
Score = 40.8 bits (96), Expect = 1e-04
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 77 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTI---ADLPY 111
F+ V P+S AA AG+ GD + ++N + I A L
Sbjct: 289 FVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRA 326
>3k50_A Putative S41 protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
2.00A {Bacteroides fragilis nctc 9343}
Length = 403
Score = 48.6 bits (116), Expect = 2e-07
Identities = 15/61 (24%), Positives = 24/61 (39%)
Query: 63 GLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP 122
L ++ I +V P SPA AGL G ++ +N I +E++Q
Sbjct: 79 TLYKVLDNDTAYNALISYVVPGSPAEEAGLQRGHWIMMMNGDYITKKVESELLQGSTRQL 138
Query: 123 A 123
Sbjct: 139 Q 139
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid
module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Length = 113
Score = 46.2 bits (110), Expect = 2e-07
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 60 RRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQ 119
L LR + + I V SPA AGL PGD ++A+ Q + + +V + ++
Sbjct: 21 AELQLREPSFPDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNA--EDVYEAVR 78
Query: 120 N 120
Sbjct: 79 T 79
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein
3; structural genomics consortium, SGC, PDZ domain,
signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 46.0 bits (109), Expect = 3e-07
Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 85 SPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP--AYLHLLV 129
GL GD + + +Q + +L + +VV++++ P A + LL+
Sbjct: 43 DSQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLI 89
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 46.0 bits (109), Expect = 3e-07
Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 26/105 (24%)
Query: 28 ILRRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDT-IFIKHVRPHSP 86
L R + + G T + Y D+ D I+I + P+S
Sbjct: 24 DLYRMNSQDKLGLT----VCYRT-------------------DDEDDIGIYISEIDPNSI 60
Query: 87 AAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 130
AA G + GDR++ +N + + A + L LL+
Sbjct: 61 AAKDGRIREGDRIIQINGIEVQNREEAVAL-LTSEENKNFSLLIA 104
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large
homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 45.1 bits (107), Expect = 4e-07
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 5/75 (6%)
Query: 58 GDRRLGLRSRCMDEPMDTIFIKHVRPHSPAA-AAGLVPGDRVVAVNNQTIADLPYAEVVQ 116
LG+ R + I + A L GD + VN Q + P + +
Sbjct: 16 AGEHLGVTFRVEGGE---LVIARILHGGMVAQQGLLHVGDIIKEVNGQPVGSDP-RALQE 71
Query: 117 LIQNSPAYLHLLVVP 131
L++N+ + L ++
Sbjct: 72 LLRNASGSVILKILS 86
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 47.5 bits (112), Expect = 4e-07
Identities = 18/79 (22%), Positives = 34/79 (43%)
Query: 76 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135
IF+ V SPAA GL GD+++ VNN ++ E V + + P + ++ ++
Sbjct: 33 IFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK 92
Query: 136 LLQLYFGDTAHNPETNQRP 154
+ ++ R
Sbjct: 93 DVYRRIVESDVGDSFYIRT 111
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone,
hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A
4a9g_A
Length = 436
Score = 47.3 bits (113), Expect = 6e-07
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 78 IKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
I V SPAA AGL D ++ VN + + AE+ +++ PA + L +
Sbjct: 367 IDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSI--AEMRKVLAAKPAIIALQI 416
Score = 40.7 bits (96), Expect = 9e-05
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 77 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTI---ADLPY 111
F+ V P S +A AG+ GD + ++N + + A+L
Sbjct: 266 FVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRS 303
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase;
2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Length = 451
Score = 46.9 bits (112), Expect = 8e-07
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 78 IKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 129
+ +S AG+ PGD +++ N + + D+ + + Q L + V
Sbjct: 390 VVGASENSAGWRAGIRPGDIIISANKKPVTDV--KSLQTIAQEKKKELLVQV 439
Score = 43.8 bits (104), Expect = 9e-06
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 69 MDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTI---ADLPY 111
E + V P+SPA AGL GD + +N+ I +
Sbjct: 277 YPEDFQGALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKT 322
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 46.4 bits (109), Expect = 1e-06
Identities = 18/83 (21%), Positives = 34/83 (40%)
Query: 76 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 135
IF+ V SPAA GL GD+++ VNN ++ E V + + P + ++ ++
Sbjct: 25 IFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK 84
Query: 136 LLQLYFGDTAHNPETNQRPPCPI 158
+ ++ R
Sbjct: 85 DVYRRIVESDVGDSFYIRTHFEY 107
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 45.9 bits (108), Expect = 1e-06
Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 1/84 (1%)
Query: 76 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 134
I I + A L GD +++VN + ++ + E VQ ++ + + L V +
Sbjct: 105 ILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMKE 164
Query: 135 DLLQLYFGDTAHNPETNQRPPCPI 158
+ + P P+
Sbjct: 165 VSPYFKNSAGGTSVGWDSPPASPL 188
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high
affinity ligand, protein BIND; 1.70A {Homo sapiens}
Length = 112
Score = 43.8 bits (104), Expect = 2e-06
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 60 RRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQ 119
L + E I+++ V P+SP+ G+ GD +V VN + + D +E+ + +
Sbjct: 21 DELKASNPDFPEVSSGIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLVDS--SELQEAVL 78
Query: 120 NS 121
Sbjct: 79 TE 80
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation,
binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4
b.47.1.1
Length = 325
Score = 44.9 bits (107), Expect = 4e-06
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 60 RRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTI---ADLPYA 112
L LR + + I V SPA AGL PGD ++A+ Q + D+ A
Sbjct: 242 AELQLREPSFPDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDVYEA 297
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell
membrane, membrane, metal-binding, metalloprotease,
transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Length = 95
Score = 42.6 bits (100), Expect = 4e-06
Identities = 14/77 (18%), Positives = 27/77 (35%)
Query: 78 IKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDLL 137
+ + +S AA A + PG + AV+ D + + + + V P +D
Sbjct: 6 VGEIAANSIAAEAQIAPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTITVAPFGSDQR 65
Query: 138 QLYFGDTAHNPETNQRP 154
+ D H +
Sbjct: 66 RDVKLDLRHWAFEPDKE 82
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 118
Score = 42.5 bits (99), Expect = 7e-06
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
Query: 58 GDRRLGL-RSRCMDEPMDTIFIKHVRPH--SPAAAAGLVPGDRVVAVNNQTIADLPYAEV 114
R + T+ +K V SP + PGDR++ +N + L EV
Sbjct: 27 CRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEV 86
Query: 115 VQLIQNSPAYLHLLV 129
I+ + L LL+
Sbjct: 87 EDAIKQTSQTLQLLI 101
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 43.4 bits (101), Expect = 7e-06
Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 1/107 (0%)
Query: 63 GLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP 122
G R D IF+ V+P PA+ L PGD+++ N + ++ + + V L++
Sbjct: 13 GGRGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ 71
Query: 123 AYLHLLVVPKENDLLQLYFGDTAHNPETNQRPPCPIYQNVWEAEQDQ 169
+ L++V + + + + A
Sbjct: 72 NTVELIIVREVGNGAKQEIRVRVEKDGGSGGVSSVPTNLEVVAATPT 118
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 43.4 bits (103), Expect = 1e-05
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 60 RRLGLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTI---ADLPYA 112
+ L R R + + +I V P +PA A GL D ++++N Q++ D+
Sbjct: 240 KELKDRHRDFPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDV 295
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics,
PSI, protein structure initiative; 2.00A {Mycobacterium
tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Length = 324
Score = 43.0 bits (102), Expect = 2e-05
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 77 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA 123
I V AA AG+ G V V+++ I +V +++
Sbjct: 245 KIVEVVAGGAAANAGVPKGVVVTKVDDRPINS--ADALVAAVRSKAP 289
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease,
serine protease, serine- lysine catalytic DYAD, PDZ
domain, photosynthesis; 1.80A {Scenedesmus obliquus}
SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Length = 388
Score = 43.0 bits (102), Expect = 2e-05
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 85 SPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQ 119
PA AG GD +V V+ + + +V L+Q
Sbjct: 110 GPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQ 144
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta
protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4
b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A*
1sot_A 1soz_A 1vcw_A 2r3y_A
Length = 318
Score = 42.2 bits (100), Expect = 3e-05
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 76 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIAD 108
I + V P PAA AG+ D +++V+N+
Sbjct: 246 IVVNEVSPDGPAANAGIQVNDLIISVDNKPAIS 278
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium; NMR {Geobacillus thermodenitrificans}
Length = 94
Score = 39.2 bits (92), Expect = 6e-05
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 76 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA 123
+++ V P+ PAA L GDR+ A++ Q I ++V ++ A
Sbjct: 7 VYVMSVLPNMPAAG-RLEAGDRIAAIDGQPINT--SEQIVSYVREKQA 51
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell
membrane, hydrolase, membrane, protease, serine
protease, transmembrane; NMR {Bacillus subtilis}
Length = 91
Score = 38.4 bits (90), Expect = 1e-04
Identities = 8/48 (16%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 76 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA 123
I+ V + PA + GD++++ + + +++ I + A
Sbjct: 3 IYASSVVENMPAKG-KIEVGDKIISADGKNYQS--AEKLIDYISSKKA 47
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone,
DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Length = 345
Score = 39.9 bits (94), Expect = 2e-04
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 77 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTI---ADLPY 111
F+ V P S +A AG+ GD + ++N + + A+L
Sbjct: 266 FVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRS 303
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.92A {Vibrio cholerae} SCOP: b.36.1.5
Length = 105
Score = 38.4 bits (89), Expect = 2e-04
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 78 IKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP 122
+ + + GL GD VA+N + D + L Q+
Sbjct: 41 VSPGKDPVLFESIGLQDGDMAVALNGLDLTD--PNVMNTLFQSMN 83
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane
protein; 1.65A {Homo sapiens}
Length = 209
Score = 39.3 bits (91), Expect = 3e-04
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Query: 69 MDEPMDTIFIKHVRPHSPAAAAGLVP-GDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 127
+ + V +SPAA AGL P D ++ + +++ + P L L
Sbjct: 107 DGANENVWHVLEVESNSPAALAGLRPHSDYIIGADTVMNESEDLFSLIETHEAKP--LKL 164
Query: 128 LVVPKEND 135
V + D
Sbjct: 165 YVYNTDTD 172
Score = 37.4 bits (86), Expect = 0.001
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 78 IKHVRPHSPAAAAGLVP-GDRVVAVNNQTIADLPYAEVVQLIQNSP 122
+ V+ +SP AGL P D +V++N + + L++ +
Sbjct: 20 VLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDT-LKDLLKANV 64
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.63A {Vibrio cholerae} SCOP: b.36.1.5
Length = 87
Score = 37.1 bits (86), Expect = 3e-04
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 78 IKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA 123
+ + + GL GD VA+N + D + L Q+
Sbjct: 23 VSPGKDPVLFESIGLQDGDMAVALNGLDLTD--PNVMNTLFQSMNE 66
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology,
northeast structural genom consortium, NESG,
peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Length = 597
Score = 39.2 bits (90), Expect = 4e-04
Identities = 8/48 (16%), Positives = 21/48 (43%)
Query: 69 MDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQ 116
+ + +V A AGL GD+++A+++ + +++
Sbjct: 491 YKASPQGLDVLNVYHDESAYHAGLSAGDKIIAIDHLQATEQSVKRILE 538
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 1.70A {Listeria monocytogenes} PDB:
2kjk_A 3i1e_A
Length = 100
Score = 36.5 bits (85), Expect = 6e-04
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 76 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA 123
+++ V+ PAA L GD + ++ E + I +
Sbjct: 9 VYVMSVKDDVPAADV-LHAGDLITEIDGNAFKS--SQEFIDYIHSKKV 53
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein
structure initiative; NMR
{Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Length = 125
Score = 36.8 bits (85), Expect = 7e-04
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 76 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA 123
+ I V P SPA+ L PG + ++N ++L ++
Sbjct: 27 VQIDSVVPGSPASKV-LTPGLVIESINGMPTSNL--TTYSAALKTISV 71
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR
{Streptococcus pneumoniae}
Length = 134
Score = 34.9 bits (81), Expect = 0.003
Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 76 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP 122
+ ++ V+ + PA L D + V+++ IA ++ + N
Sbjct: 59 VIVRSVQSNMPANG-HLEKYDVITKVDDKEIAS--STDLQSALYNHS 102
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1
protein; PDZ domain, structural genomics consortium,
SGC, hydrolase R; 2.29A {Homo sapiens}
Length = 101
Score = 32.5 bits (73), Expect = 0.019
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 69 MDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQ---NSPAYL 125
++E + +K V+ S A AGL G ++ ++N + P++EV ++ S L
Sbjct: 34 IEEKNKAVVVKSVQRGSLAEVAGLQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPL 93
Query: 126 HLLVVPK 132
LLV K
Sbjct: 94 RLLVATK 100
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor,
hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Length = 348
Score = 33.8 bits (78), Expect = 0.023
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 14/49 (28%)
Query: 76 IFIKHVRPHSPAAAAGLVP-----------GDRVVAVNNQTI---ADLP 110
+ + P PA AGL GD + +VN + +DL
Sbjct: 253 VLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSNGSDLY 301
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.15
Identities = 34/178 (19%), Positives = 56/178 (31%), Gaps = 81/178 (45%)
Query: 7 QGENEAPRIKKSSQQLG-PRNLILRRSAA-----------LNGFGFTLRHFIVYPPESYT 54
QG SQ+ G +L AA + +GF++ ++ P + T
Sbjct: 1624 QG----------SQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLT 1673
Query: 55 VLAGDRRLGLRSR------CMDEPMD------TIFIKHVRPHS----------------- 85
+ G + G R R + +D IF K + HS
Sbjct: 1674 IHFGGEK-GKRIRENYSAMIFETIVDGKLKTEKIF-KEINEHSTSYTFRSEKGLLSATQF 1731
Query: 86 --PA------AA------AGLVPGDRVVA----------VNNQTIAD-LPYAEVVQLI 118
PA AA GL+P D A ++AD + +V+++
Sbjct: 1732 TQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALA---SLADVMSIESLVEVV 1786
Score = 28.5 bits (63), Expect = 1.5
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 18/81 (22%)
Query: 23 GPRNLILRRS---AALNGFGFTLRHFIVYPP--ESYTVLAGDRRLGLRSRCMDEPMDTIF 77
G +NL++ S +L G TLR P + + +R+L +R + P+ + F
Sbjct: 373 GAKNLVV--SGPPQSLYGLNLTLRKAKA-PSGLDQSRIPFSERKLKFSNRFL--PVASPF 427
Query: 78 IKHVRPHSP--AAAAGLVPGD 96
HS A+ L+ D
Sbjct: 428 ------HSHLLVPASDLINKD 442
>3okf_A 3-dehydroquinate synthase; structural genomics, center for
structural genomics of infec diseases, csgid, NAD,
lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Length = 390
Score = 28.8 bits (65), Expect = 1.0
Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 58 GDRRLGLRSRCMD-EPMDTIFIK--------HVRPH--SPAAAAGLVPGDRVVAVNNQTI 106
G L +S M+ + M+ I + + + A L +VV V N T+
Sbjct: 14 GTENLYFQSNAMECKTMERITVNLGERSYPISIGAGLFANPALLSLSAKQKVVIVTNHTV 73
Query: 107 ADLPYAEVVQLIQNSPAYLHLLVVP 131
A L ++ L+ + LL +P
Sbjct: 74 APLYAPAIISLLDHIGCQHALLELP 98
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside,
2-deoxystreptamine, dehydroquinate synthase, lyase; HET:
NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Length = 368
Score = 28.1 bits (63), Expect = 1.7
Identities = 6/56 (10%), Positives = 15/56 (26%), Gaps = 1/56 (1%)
Query: 76 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 131
S + D+ + +++ + D A +H+L
Sbjct: 15 FAFGEHVLESVESYIPRDEFDQYIMISDSGVPDS-IVHYAAEYFGKLAPVHILRFQ 69
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus
anthracis}
Length = 267
Score = 27.1 bits (61), Expect = 2.9
Identities = 9/18 (50%), Positives = 10/18 (55%), Gaps = 3/18 (16%)
Query: 131 PKENDLLQLYFGDTAHNP 148
PKE +Y GDTA P
Sbjct: 27 PKER---IIYLGDTARCP 41
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan
synthesis, peptidoglycan biosynthesis; HET: 003 DGL;
1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Length = 255
Score = 27.2 bits (61), Expect = 3.0
Identities = 5/10 (50%), Positives = 8/10 (80%)
Query: 139 LYFGDTAHNP 148
+Y+GD+A P
Sbjct: 29 IYYGDSARVP 38
>3l7x_A SMU.412C, putative HIT-like protein involved in cell-cycle
regulation; 1.70A {Streptococcus mutans}
Length = 173
Score = 26.6 bits (59), Expect = 3.2
Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 23/74 (31%)
Query: 63 GLRSRCMDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIA--DL-PYAEVVQLIQ 119
G + D +F K V P+ V + +A D+ +
Sbjct: 26 GGQQMGRGSMNDCLFCKIVAGDIPS---------SKVYEDEDVLAFLDISQATKG----- 71
Query: 120 NSPAYLHLLVVPKE 133
H LV+PKE
Sbjct: 72 ------HTLVIPKE 79
>1k32_A Tricorn protease; protein degradation, substrate gating, serine
protease, beta propeller, proteasome, hydrolase; 2.00A
{Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1
b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Length = 1045
Score = 27.5 bits (60), Expect = 3.2
Identities = 5/43 (11%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 81 VRPHSPAAAAGL-VPGDRVVAVNNQTIADLPYAEVVQLIQNSP 122
SP G+ G + ++ +T+ + + +++
Sbjct: 763 EGEKSPIFEYGIDPTGYLIEDIDGETVGAG--SNIYRVLSEKA 803
>3out_A Glutamate racemase; structural genomics, center for structural
genomics of infec diseases, csgid, MURI, cell envelope;
HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Length = 268
Score = 27.1 bits (61), Expect = 3.3
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 139 LYFGDTAHNP 148
+YFGD A P
Sbjct: 36 IYFGDIARIP 45
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Length = 276
Score = 27.1 bits (61), Expect = 3.3
Identities = 4/10 (40%), Positives = 4/10 (40%)
Query: 139 LYFGDTAHNP 148
Y GD P
Sbjct: 36 CYIGDNERCP 45
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP:
c.78.2.1 c.78.2.1 PDB: 1b74_A*
Length = 254
Score = 27.1 bits (61), Expect = 3.4
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 139 LYFGDTAHNP 148
+Y GDTA P
Sbjct: 29 VYLGDTARVP 38
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi
isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Length = 272
Score = 26.7 bits (60), Expect = 3.5
Identities = 9/18 (50%), Positives = 10/18 (55%), Gaps = 3/18 (16%)
Query: 131 PKENDLLQLYFGDTAHNP 148
PKEN +Y GDT P
Sbjct: 27 PKEN---IIYVGDTKRCP 41
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan
synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A
{Staphylococcus aureus}
Length = 286
Score = 26.8 bits (60), Expect = 3.6
Identities = 4/10 (40%), Positives = 4/10 (40%)
Query: 139 LYFGDTAHNP 148
Y GD P
Sbjct: 51 YYLGDIGRCP 60
>3uhf_A Glutamate racemase; structural genomics, center for structural
genomics of infec diseases, csgid, alpha-beta sandwich
fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni}
PDB: 3uho_A* 3uhp_A
Length = 274
Score = 26.8 bits (60), Expect = 3.7
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 139 LYFGDTAHNP 148
+Y+GDTA P
Sbjct: 53 IYYGDTARVP 62
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin
metabolism, S-adenosyl-methionine; 1.80A {Geobacter
metallireducens}
Length = 204
Score = 26.8 bits (59), Expect = 3.7
Identities = 13/75 (17%), Positives = 19/75 (25%), Gaps = 10/75 (13%)
Query: 30 RRSAALNGFGFTLRHFIVYPPESYTVLAGDRRLGLRSRCMDEPMDTIFIKHVRPHSP--- 86
R L L+ F+ T++ GL D +FI
Sbjct: 72 RNPQYLGFIRDNLKKFVARN---VTLVEAFAPEGLDD---LPDPDRVFIGGSGGMLEEII 125
Query: 87 -AAAAGLVPGDRVVA 100
A L +V
Sbjct: 126 DAVDRRLKSEGVIVL 140
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino
acid biosynthesis, DHQS, O form J, domain movement,
cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans}
SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A*
1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Length = 393
Score = 26.9 bits (60), Expect = 3.7
Identities = 6/45 (13%), Positives = 12/45 (26%), Gaps = 3/45 (6%)
Query: 74 DTIFIKH--VRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQ 116
++I R + V V + I + Y +
Sbjct: 13 ESIIADFGLWRNYVAKDLISDCSSTTYVLVTDTNIGSI-YTPSFE 56
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1
gas} PDB: 2ohg_A 2ohv_A*
Length = 273
Score = 26.7 bits (60), Expect = 3.7
Identities = 5/10 (50%), Positives = 7/10 (70%)
Query: 139 LYFGDTAHNP 148
+Y GD+A P
Sbjct: 41 VYIGDSARAP 50
>3ist_A Glutamate racemase; structural genomics, cell WALL
biogenesis/degradation, isomerase, peptidoglycan
synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB:
3hfr_A* 3isv_A*
Length = 269
Score = 26.7 bits (60), Expect = 3.8
Identities = 6/10 (60%), Positives = 6/10 (60%)
Query: 139 LYFGDTAHNP 148
Y GDTA P
Sbjct: 34 YYLGDTARCP 43
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.1 bits (59), Expect = 3.8
Identities = 31/147 (21%), Positives = 48/147 (32%), Gaps = 54/147 (36%)
Query: 44 HFIVY------PPESYTVLAGDRRLGLRSRCMDEPMDTIFIKH-VRPHSPAAAAGLVPGD 96
I + PE T+ R + L D F++ +R S A A G
Sbjct: 475 SHIGHHLKNIEHPERMTLF---RMVFL---------DFRFLEQKIRHDSTAWNA---SGS 519
Query: 97 RVVAVNNQTIADL-----------PYAE--VVQLIQNSPAYLHLLVVPKENDLLQLYFGD 143
+ N T+ L P E V ++ P L+ K DLL++
Sbjct: 520 ----ILN-TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI---- 570
Query: 144 TAHNPETNQRPPCPIYQNVWEAEQDQL 170
A E I++ EA + Q+
Sbjct: 571 -ALMAEDE-----AIFE---EAHK-QV 587
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL
biogenesis/degradation, cell shape, benzyl purine, MURI
inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis}
PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Length = 290
Score = 26.8 bits (60), Expect = 4.3
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 139 LYFGDTAHNP 148
+Y GDTA P
Sbjct: 53 IYLGDTARCP 62
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 26.4 bits (58), Expect = 6.3
Identities = 19/143 (13%), Positives = 38/143 (26%), Gaps = 37/143 (25%)
Query: 9 ENEAPRIKKSSQQLGPRNLILRRS--AAL-NGFGF-----TL-----RHFI-VYPPESY- 53
+N +++ L P + A FGF + + Y
Sbjct: 1413 DNVDKILEQFEYVLYPSKTLKTDGVRAVSITSFGFGQKGGQAIVVHPDYLYGAITEDRYN 1472
Query: 54 --------TVLAGDRRL--GLRSRCMDEPMDTIFIKHVRPHSPAAAAG--LVPGDRVVAV 101
+ + G+ + K P++ L P RV
Sbjct: 1473 EYVAKVSAREKSAYKFFHNGMIYNKL------FVSKEHAPYTDELEEDVYLDPLARVSK- 1525
Query: 102 NNQTIADLPYAEVVQLIQNSPAY 124
++ L + + IQ+ +Y
Sbjct: 1526 -DKKSGSLTFNS--KNIQSKDSY 1545
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.7 bits (55), Expect = 7.7
Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 23/47 (48%)
Query: 11 EAPRIKKSSQQLGPRNLILRRSAALNGFGFTLRHFIVYPPESYTVLA 57
E +KK L+ S L+ +Y +S LA
Sbjct: 18 EKQALKK-----------LQAS---------LK---LYADDSAPALA 41
>1b9l_A Protein (epimerase); isomerase; 2.90A {Escherichia coli} SCOP:
d.96.1.3
Length = 120
Score = 24.9 bits (55), Expect = 9.0
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 69 MDEPMDTIFIKHVR 82
M +P I IK++R
Sbjct: 1 MAQPAAIIRIKNLR 14
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural
genomics, joint center structural genomics, JCSG; HET:
MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Length = 201
Score = 25.7 bits (56), Expect = 9.4
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 87 AAAAGLVPGDRVVAV 101
AA +G +P + VVAV
Sbjct: 150 AADSGAIPIEEVVAV 164
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.408
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,745,778
Number of extensions: 159225
Number of successful extensions: 771
Number of sequences better than 10.0: 1
Number of HSP's gapped: 634
Number of HSP's successfully gapped: 236
Length of query: 177
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 90
Effective length of database: 4,272,666
Effective search space: 384539940
Effective search space used: 384539940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)