BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16407
(59 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P51787|KCNQ1_HUMAN Potassium voltage-gated channel subfamily KQT member 1 OS=Homo
sapiens GN=KCNQ1 PE=1 SV=3
Length = 676
Score = 58.9 bits (141), Expect = 8e-09, Method: Composition-based stats.
Identities = 26/36 (72%), Positives = 28/36 (77%), Gaps = 3/36 (8%)
Query: 27 YSHRR---AGATFQGKVYNFLERPSGWKCFVYHFAV 59
YS RR A QG+VYNFLERP+GWKCFVYHFAV
Sbjct: 94 YSTRRPVLARTHVQGRVYNFLERPTGWKCFVYHFAV 129
>sp|P97414|KCNQ1_MOUSE Potassium voltage-gated channel subfamily KQT member 1 OS=Mus
musculus GN=Kcnq1 PE=2 SV=3
Length = 668
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/36 (69%), Positives = 27/36 (75%), Gaps = 3/36 (8%)
Query: 27 YSHRR---AGATFQGKVYNFLERPSGWKCFVYHFAV 59
YS RR A QG+VYNFLERP+GWKCFVYHF V
Sbjct: 93 YSARRPLLARTHIQGRVYNFLERPTGWKCFVYHFTV 128
>sp|Q9Z0N7|KCNQ1_RAT Potassium voltage-gated channel subfamily KQT member 1 OS=Rattus
norvegicus GN=Kcnq1 PE=2 SV=1
Length = 669
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/36 (69%), Positives = 27/36 (75%), Gaps = 3/36 (8%)
Query: 27 YSHRR---AGATFQGKVYNFLERPSGWKCFVYHFAV 59
YS RR A QG+VYNFLERP+GWKCFVYHF V
Sbjct: 94 YSTRRPLLARTHIQGRVYNFLERPTGWKCFVYHFTV 129
>sp|P70057|KCNQ1_XENLA Potassium voltage-gated channel subfamily KQT member 1 (Fragment)
OS=Xenopus laevis GN=kcnq1 PE=2 SV=1
Length = 377
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 24/36 (66%), Positives = 27/36 (75%), Gaps = 3/36 (8%)
Query: 27 YSHRR---AGATFQGKVYNFLERPSGWKCFVYHFAV 59
YS RR + QG+VYNFLERP+GWKCFVYHF V
Sbjct: 60 YSGRRPLLSRTNIQGRVYNFLERPTGWKCFVYHFTV 95
>sp|O73925|KCNQ1_SQUAC Potassium voltage-gated channel subfamily KQT member 1 OS=Squalus
acanthias GN=KCNQ1 PE=2 SV=1
Length = 660
Score = 52.4 bits (124), Expect = 7e-07, Method: Composition-based stats.
Identities = 18/23 (78%), Positives = 21/23 (91%)
Query: 37 QGKVYNFLERPSGWKCFVYHFAV 59
QG+ YNFLERP+GWKCF+YHF V
Sbjct: 100 QGRTYNFLERPTGWKCFIYHFTV 122
>sp|P56696|KCNQ4_HUMAN Potassium voltage-gated channel subfamily KQT member 4 OS=Homo
sapiens GN=KCNQ4 PE=1 SV=2
Length = 695
Score = 32.7 bits (73), Expect = 0.64, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 28 SHRRAGATFQGKVYNFLERPSGWKCFVYH 56
+H+R Q VYN LERP GW FVYH
Sbjct: 76 AHKRY-RRLQNWVYNVLERPRGW-AFVYH 102
>sp|Q9JK97|KCNQ4_MOUSE Potassium voltage-gated channel subfamily KQT member 4 OS=Mus
musculus GN=Kcnq4 PE=2 SV=2
Length = 696
Score = 32.3 bits (72), Expect = 0.78, Method: Composition-based stats.
Identities = 14/21 (66%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 36 FQGKVYNFLERPSGWKCFVYH 56
Q VYN LERP GW FVYH
Sbjct: 84 LQNWVYNVLERPRGW-AFVYH 103
>sp|Q9JK45|KCNQ5_MOUSE Potassium voltage-gated channel subfamily KQT member 5 OS=Mus
musculus GN=Kcnq5 PE=1 SV=2
Length = 933
Score = 32.3 bits (72), Expect = 0.83, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 12/50 (24%)
Query: 7 PRSLLTNPDCRLFDSHYLVKYSHRRAGATFQGKVYNFLERPSGWKCFVYH 56
P S ++ CR VKY RR Q +YN LERP GW FVYH
Sbjct: 94 PLSYTSSQSCR-----RNVKY--RRV----QNYLYNVLERPRGW-AFVYH 131
>sp|Q9NR82|KCNQ5_HUMAN Potassium voltage-gated channel subfamily KQT member 5 OS=Homo
sapiens GN=KCNQ5 PE=1 SV=3
Length = 932
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 12/50 (24%)
Query: 7 PRSLLTNPDCRLFDSHYLVKYSHRRAGATFQGKVYNFLERPSGWKCFVYH 56
P S ++ CR VKY RR Q +YN LERP GW F+YH
Sbjct: 93 PLSYTSSQSCR-----RNVKY--RRV----QNYLYNVLERPRGW-AFIYH 130
>sp|O88943|KCNQ2_RAT Potassium voltage-gated channel subfamily KQT member 2 OS=Rattus
norvegicus GN=Kcnq2 PE=2 SV=1
Length = 852
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 36 FQGKVYNFLERPSGWKCFVYH 56
Q +YN LERP GW F+YH
Sbjct: 77 LQNFLYNVLERPRGW-AFIYH 96
>sp|O43526|KCNQ2_HUMAN Potassium voltage-gated channel subfamily KQT member 2 OS=Homo
sapiens GN=KCNQ2 PE=1 SV=2
Length = 872
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 36 FQGKVYNFLERPSGWKCFVYH 56
Q +YN LERP GW F+YH
Sbjct: 77 LQNFLYNVLERPRGW-AFIYH 96
>sp|Q9Z351|KCNQ2_MOUSE Potassium voltage-gated channel subfamily KQT member 2 OS=Mus
musculus GN=Kcnq2 PE=1 SV=1
Length = 759
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 36 FQGKVYNFLERPSGWKCFVYH 56
Q +YN LERP GW F+YH
Sbjct: 77 LQNFLYNVLERPRGW-AFIYH 96
>sp|A4Q9E8|TTLL6_MOUSE Tubulin polyglutamylase TTLL6 OS=Mus musculus GN=Ttll6 PE=2 SV=1
Length = 822
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 3 DTLNPRSLLTNPDCRLFDSHYLVKYSHRRAGATFQGKVYNFLERP 47
++L SL T+P+C +S ++V Y+H++ A+F + +P
Sbjct: 652 ESLASMSLSTSPECSSPESVHMVSYNHKQQKASFHKPMQEKKSKP 696
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.140 0.472
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,068,219
Number of Sequences: 539616
Number of extensions: 664414
Number of successful extensions: 1284
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1278
Number of HSP's gapped (non-prelim): 13
length of query: 59
length of database: 191,569,459
effective HSP length: 32
effective length of query: 27
effective length of database: 174,301,747
effective search space: 4706147169
effective search space used: 4706147169
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)