Query psy16407
Match_columns 59
No_of_seqs 48 out of 50
Neff 2.7
Searched_HMMs 29240
Date Fri Aug 16 20:32:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16407.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16407hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1djl_A Transhydrogenase DIII; 56.0 5.8 0.0002 28.0 1.9 26 2-27 130-162 (207)
2 1d4o_A NADP(H) transhydrogenas 55.7 6 0.00021 27.5 2.0 26 2-27 107-139 (184)
3 2fsv_C NAD(P) transhydrogenase 55.5 5.9 0.0002 27.8 1.9 26 2-27 131-163 (203)
4 1pno_A NAD(P) transhydrogenase 53.7 6.7 0.00023 27.2 1.9 26 2-27 108-140 (180)
5 2bru_C NAD(P) transhydrogenase 46.3 8 0.00027 26.9 1.4 26 2-27 115-147 (186)
6 3lu9_C Proteinase-activated re 44.4 6.5 0.00022 19.6 0.5 10 2-11 3-12 (25)
7 3jtg_A ETS-related transcripti 33.6 13 0.00044 23.2 0.7 16 36-51 79-94 (103)
8 4i4k_A Uncharacterized protein 26.9 52 0.0018 19.2 2.6 19 40-58 120-138 (143)
9 3soy_A NTF2-like superfamily p 25.1 63 0.0021 19.2 2.8 24 35-58 109-134 (145)
10 1wwx_A E74-like factor 5 ESE-2 24.9 27 0.00093 22.0 1.2 16 37-52 83-98 (107)
11 3fsd_A NTF2-like protein of un 23.9 61 0.0021 18.4 2.5 20 37-58 110-131 (134)
12 2laq_A Accessory gland-specifi 20.8 44 0.0015 17.8 1.3 12 6-17 9-20 (36)
No 1
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Probab=55.96 E-value=5.8 Score=27.99 Aligned_cols=26 Identities=27% Similarity=0.548 Sum_probs=21.3
Q ss_pred CCCC------CCCCccc-Ccchhhhcccceeee
Q psy16407 2 NDTL------NPRSLLT-NPDCRLFDSHYLVKY 27 (59)
Q Consensus 2 ~~~l------~p~~~~~-~p~~~~~~~ry~~~~ 27 (59)
||+. ||.+||+ -|.=+.|++|-+.++
T Consensus 130 NDvVNPaA~~dp~SpI~GMPvL~v~kAk~ViV~ 162 (207)
T 1djl_A 130 NDTVNSAAQEDPNSIIAGMPVLEVWKSKQVIVM 162 (207)
T ss_dssp CGGGCTHHHHCTTSTTTTCCCCCGGGSSEEEEE
T ss_pred ccccCCccccCCCCCccCCeeecceecCEEEEE
Confidence 7887 6788876 488899999988775
No 2
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=55.71 E-value=6 Score=27.50 Aligned_cols=26 Identities=27% Similarity=0.548 Sum_probs=21.2
Q ss_pred CCCC------CCCCccc-Ccchhhhcccceeee
Q psy16407 2 NDTL------NPRSLLT-NPDCRLFDSHYLVKY 27 (59)
Q Consensus 2 ~~~l------~p~~~~~-~p~~~~~~~ry~~~~ 27 (59)
|||. ||.+||+ -|.=+.|++|-+.++
T Consensus 107 NDvVNPaA~~dp~SpI~GMPvl~v~kAk~ViV~ 139 (184)
T 1d4o_A 107 NDTVNSAAQEDPNSIIAGMPVLEVWKSKQVIVM 139 (184)
T ss_dssp SGGGCTHHHHCTTSTTTTCCCCCGGGSSCEEEE
T ss_pred CccCCCccccCCCCCccCCeeeehhhCCEEEEE
Confidence 7887 6788876 488899999988775
No 3
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=55.47 E-value=5.9 Score=27.85 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=20.8
Q ss_pred CCCC------CCCCccc-Ccchhhhcccceeee
Q psy16407 2 NDTL------NPRSLLT-NPDCRLFDSHYLVKY 27 (59)
Q Consensus 2 ~~~l------~p~~~~~-~p~~~~~~~ry~~~~ 27 (59)
||+. ||.+||+ -|.=+.|++|-+.++
T Consensus 131 NDvVNPaA~~dp~SpI~GMPvL~v~kAk~ViV~ 163 (203)
T 2fsv_C 131 NDVTNPAAKTDPSSPIYGMPILDVWKAGTVLFI 163 (203)
T ss_dssp CGGGCGGGTSCTTSTTTTCCCCCGGGSSEEEEE
T ss_pred ccccCchhhcCCCCCcCCCeeeccccCCEEEEE
Confidence 7776 6788875 488889999988875
No 4
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=53.70 E-value=6.7 Score=27.19 Aligned_cols=26 Identities=19% Similarity=0.171 Sum_probs=20.6
Q ss_pred CCCC------CCCCccc-Ccchhhhcccceeee
Q psy16407 2 NDTL------NPRSLLT-NPDCRLFDSHYLVKY 27 (59)
Q Consensus 2 ~~~l------~p~~~~~-~p~~~~~~~ry~~~~ 27 (59)
||+. ||.+||+ -|.=+.|++|-+.++
T Consensus 108 NDvvNpaA~~dp~SpI~GMPvl~v~kAk~ViV~ 140 (180)
T 1pno_A 108 NDVTNPAAKTDPSSPIYGMPILDVEKAGTVLFI 140 (180)
T ss_dssp CGGGCGGGTTCTTSTTTTCCCCCGGGSSEEEEE
T ss_pred ccccCchhccCCCCCcCCCeeechhhCCEEEEE
Confidence 7776 6788875 488889999988765
No 5
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=46.26 E-value=8 Score=26.94 Aligned_cols=26 Identities=23% Similarity=0.579 Sum_probs=20.8
Q ss_pred CCCC------CCCCccc-Ccchhhhcccceeee
Q psy16407 2 NDTL------NPRSLLT-NPDCRLFDSHYLVKY 27 (59)
Q Consensus 2 ~~~l------~p~~~~~-~p~~~~~~~ry~~~~ 27 (59)
||+. ||.+||+ -|.=+.|++|-+.++
T Consensus 115 NDvVNPaA~~dp~SpI~GMPvL~v~kAk~ViV~ 147 (186)
T 2bru_C 115 NDTVNPAAQDDPKSPIAGMPVLEVWKAQNVIVF 147 (186)
T ss_dssp GGGGCGGGTTSTTSSSTTCCCCCCTTSSEEEEE
T ss_pred ccccCccccCCCCCCcCCCeeeccccCCEEEEE
Confidence 7776 6788874 588899999988765
No 6
>3lu9_C Proteinase-activated receptor 1; serine protease, acute phase, blood coagulation, calcium, CL PAIR of basic residues, disease mutation; HET: NAG; 1.80A {Homo sapiens}
Probab=44.40 E-value=6.5 Score=19.61 Aligned_cols=10 Identities=70% Similarity=1.089 Sum_probs=8.6
Q ss_pred CCCCCCCCcc
Q psy16407 2 NDTLNPRSLL 11 (59)
Q Consensus 2 ~~~l~p~~~~ 11 (59)
|+|+||++=|
T Consensus 3 n~T~~pRsF~ 12 (25)
T 3lu9_C 3 NATLDPRSFL 12 (26)
T ss_dssp CTTCEESCCC
T ss_pred CCccCceeeE
Confidence 8999999875
No 7
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21
Probab=33.57 E-value=13 Score=23.16 Aligned_cols=16 Identities=44% Similarity=0.748 Sum_probs=14.0
Q ss_pred ecceeeeeeecCCCce
Q psy16407 36 FQGKVYNFLERPSGWK 51 (59)
Q Consensus 36 ~Q~rvYNFLERP~Gwk 51 (59)
-|.-+|-|++-|.||+
T Consensus 79 G~r~vY~F~~~~~g~~ 94 (103)
T 3jtg_A 79 GRRLVYKFGKNSSGWK 94 (103)
T ss_dssp TCTTEEEBCTTCCSCS
T ss_pred CceEEEEeCCCccCCC
Confidence 4778999999999996
No 8
>4i4k_A Uncharacterized protein SGCJ; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: CIT PG4 1PE; 1.70A {Streptomyces globisporus}
Probab=26.95 E-value=52 Score=19.22 Aligned_cols=19 Identities=16% Similarity=0.415 Sum_probs=15.5
Q ss_pred eeeeeecCCCceeeeeeee
Q psy16407 40 VYNFLERPSGWKCFVYHFA 58 (59)
Q Consensus 40 vYNFLERP~Gwk~f~YH~~ 58 (59)
.|-|...+.||++..+|.+
T Consensus 120 T~v~~r~~g~WrI~~~h~S 138 (143)
T 4i4k_A 120 SWLAVEQDGQWRLAAYQNS 138 (143)
T ss_dssp EEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEECCcEEEEEecCC
Confidence 4566788999999999964
No 9
>3soy_A NTF2-like superfamily protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Salmonella enterica subsp}
Probab=25.10 E-value=63 Score=19.16 Aligned_cols=24 Identities=21% Similarity=0.646 Sum_probs=19.2
Q ss_pred eecceeeeeeec-C-CCceeeeeeee
Q psy16407 35 TFQGKVYNFLER-P-SGWKCFVYHFA 58 (59)
Q Consensus 35 ~~Q~rvYNFLER-P-~Gwk~f~YH~~ 58 (59)
..+++.=+.+.| | .|||-+..|.+
T Consensus 109 ~~~~r~T~V~~r~~~ggWkIvh~H~S 134 (145)
T 3soy_A 109 HTTGRESQVWAKIPNTGWRIVHVHYS 134 (145)
T ss_dssp EEEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred eeEEEEEEEEEEcCCCCEEEEEEecC
Confidence 345666777899 9 99999999975
No 10
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=24.92 E-value=27 Score=21.98 Aligned_cols=16 Identities=31% Similarity=0.706 Sum_probs=14.4
Q ss_pred cceeeeeeecCCCcee
Q psy16407 37 QGKVYNFLERPSGWKC 52 (59)
Q Consensus 37 Q~rvYNFLERP~Gwk~ 52 (59)
|-.||-|++-+.||+.
T Consensus 83 ~rlvY~F~~~~~~~~~ 98 (107)
T 1wwx_A 83 RRLVYKFGKNAHGWQE 98 (107)
T ss_dssp SSSEEEECSSCCSSCC
T ss_pred ceEEEEeCCchhhhee
Confidence 7889999999999975
No 11
>3fsd_A NTF2-like protein of unknown function in nutrient; YP_427473.1, NTF2-like protein of unknown function in nutrie uptake; HET: UNL; 1.70A {Rhodospirillum rubrum atcc 11170} SCOP: d.17.4.0
Probab=23.93 E-value=61 Score=18.40 Aligned_cols=20 Identities=15% Similarity=0.355 Sum_probs=15.3
Q ss_pred cceeeeeeecCCC--ceeeeeeee
Q psy16407 37 QGKVYNFLERPSG--WKCFVYHFA 58 (59)
Q Consensus 37 Q~rvYNFLERP~G--wk~f~YH~~ 58 (59)
+.+|| ...+.| ||.+..|.+
T Consensus 110 ~t~vw--~k~~g~~gWriv~~h~S 131 (134)
T 3fsd_A 110 FTRIW--RRTQGPAGWKLVAGHCS 131 (134)
T ss_dssp EEEEE--EEETTTTEEEEEEEEEE
T ss_pred EEEEE--EECCCCccceEeEeEEE
Confidence 55666 467888 999999975
No 12
>2laq_A Accessory gland-specific peptide 70A; hydroxiproline rich, signaling protein; HET: HYP; NMR {Drosophila melanogaster}
Probab=20.77 E-value=44 Score=17.84 Aligned_cols=12 Identities=17% Similarity=0.335 Sum_probs=8.8
Q ss_pred CCCCcccCcchh
Q psy16407 6 NPRSLLTNPDCR 17 (59)
Q Consensus 6 ~p~~~~~~p~~~ 17 (59)
+|..||+.|.++
T Consensus 9 ~~~~~ip~p~~r 20 (36)
T 2laq_A 9 PTKFPIPSPNPR 20 (36)
T ss_dssp CCSCSSSSCSTT
T ss_pred CCCCcCCCCcch
Confidence 467788888776
Done!