Query psy16407
Match_columns 59
No_of_seqs 48 out of 50
Neff 2.7
Searched_HMMs 13730
Date Fri Aug 16 20:32:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16407.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16407hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gxfa1 d.17.4.22 (A:1-128) Hy 58.6 3.7 0.00027 22.0 2.6 24 34-57 96-121 (128)
2 d1pnoa_ c.31.1.4 (A:) Transhyd 50.9 3.8 0.00028 26.7 2.0 26 2-27 108-140 (180)
3 d1d4oa_ c.31.1.4 (A:) Transhyd 49.4 4.1 0.0003 26.5 2.0 26 2-27 103-135 (177)
4 d2f86b1 d.17.4.7 (B:343-471) A 42.4 11 0.00084 18.9 2.8 25 34-58 103-128 (129)
5 d3bb9a1 d.17.4.16 (A:27-147) U 42.2 12 0.0009 19.0 2.9 16 43-58 105-121 (121)
6 d2rcda1 d.17.4.18 (A:1-127) Un 33.7 8.7 0.00063 20.3 1.4 17 43-59 109-125 (127)
7 d3d9ra1 d.17.4.27 (A:3-134) Un 32.7 21 0.0015 18.3 2.9 21 38-58 106-128 (132)
8 d1wwxa1 a.4.5.21 (A:8-101) E74 31.3 8.5 0.00062 22.3 1.2 16 37-52 76-91 (94)
9 d2owpa1 d.17.4.18 (A:1-128) Hy 28.4 19 0.0014 19.1 2.3 13 47-59 112-124 (128)
10 d1yuaa2 g.41.3.3 (A:66-122) Pr 27.1 9.9 0.00072 20.6 0.9 32 19-53 15-46 (57)
11 d1sxra_ d.118.1.1 (A:) Peptido 25.7 5.9 0.00043 23.5 -0.3 13 47-59 58-70 (173)
12 d1pina1 b.72.1.1 (A:6-39) Mito 25.1 14 0.001 17.2 1.2 9 45-53 1-9 (34)
13 d2f2lx1 d.118.1.1 (X:335-499) 22.0 8 0.00058 22.4 -0.2 13 47-59 57-69 (165)
14 d1ycka1 d.118.1.1 (A:9-175) Pe 21.7 8.1 0.00059 22.5 -0.2 13 47-59 58-70 (167)
15 d2gbsa1 b.122.1.8 (A:2-137) Hy 21.7 9.1 0.00066 23.1 -0.0 20 34-56 31-52 (136)
16 d1n8fa_ c.1.10.4 (A:) 3-deoxy- 20.8 8.5 0.00062 26.8 -0.3 13 43-55 87-102 (343)
17 d2r4ia1 d.17.4.15 (A:1-122) Un 20.6 26 0.0019 17.7 1.8 16 43-58 104-119 (122)
No 1
>d2gxfa1 d.17.4.22 (A:1-128) Hypothetical protein YybH {Bacillus subtilis [TaxId: 1423]}
Probab=58.56 E-value=3.7 Score=21.98 Aligned_cols=24 Identities=13% Similarity=0.497 Sum_probs=17.4
Q ss_pred ceecceeeeeeec-CCC-ceeeeeee
Q psy16407 34 ATFQGKVYNFLER-PSG-WKCFVYHF 57 (59)
Q Consensus 34 r~~Q~rvYNFLER-P~G-wk~f~YH~ 57 (59)
...+++..+.++| +.| ||+.+-|.
T Consensus 96 ~~~~~~~t~v~~r~~dG~Wki~~D~~ 121 (128)
T d2gxfa1 96 YAMERRATYVFKKNAQGEWLCVIDNS 121 (128)
T ss_dssp ---EEEEEEEEEECTTSCEEEEEEET
T ss_pred ccceEEEEEEEEECCCCcEEEEEECC
Confidence 4667888888887 787 99998873
No 2
>d1pnoa_ c.31.1.4 (A:) Transhydrogenase domain III (dIII) {Rhodospirillum rubrum [TaxId: 1085]}
Probab=50.87 E-value=3.8 Score=26.74 Aligned_cols=26 Identities=19% Similarity=0.171 Sum_probs=20.6
Q ss_pred CCCC------CCCCccc-Ccchhhhcccceeee
Q psy16407 2 NDTL------NPRSLLT-NPDCRLFDSHYLVKY 27 (59)
Q Consensus 2 ~~~l------~p~~~~~-~p~~~~~~~ry~~~~ 27 (59)
||+. ||.+||+ -|.-+.|+++..+++
T Consensus 108 NDvVNPaA~~dp~spi~GMPvl~v~kak~Viv~ 140 (180)
T d1pnoa_ 108 NDVTNPAAKTDPSSPIYGMPILDVEKAGTVLFI 140 (180)
T ss_dssp CGGGCGGGTTCTTSTTTTCCCCCGGGSSEEEEE
T ss_pred cceeChhhhcCCCCcccCCceeeeecCCEEEEE
Confidence 6665 6788876 489999999988875
No 3
>d1d4oa_ c.31.1.4 (A:) Transhydrogenase domain III (dIII) {Cow (Bos taurus) [TaxId: 9913]}
Probab=49.36 E-value=4.1 Score=26.51 Aligned_cols=26 Identities=27% Similarity=0.548 Sum_probs=21.4
Q ss_pred CCCC------CCCCccc-Ccchhhhcccceeee
Q psy16407 2 NDTL------NPRSLLT-NPDCRLFDSHYLVKY 27 (59)
Q Consensus 2 ~~~l------~p~~~~~-~p~~~~~~~ry~~~~ 27 (59)
||+. ||.+||+ -|+-+.|+++-.+++
T Consensus 103 NDvVNPaA~~d~~SpI~GMPvl~v~kak~viv~ 135 (177)
T d1d4oa_ 103 NDTVNSAAQEDPNSIIAGMPVLEVWKSKQVIVM 135 (177)
T ss_dssp SGGGCTHHHHCTTSTTTTCCCCCGGGSSCEEEE
T ss_pred ccccCCcccCCCCCccCCCceeEhhhCCEEEEE
Confidence 6776 6788875 599999999999875
No 4
>d2f86b1 d.17.4.7 (B:343-471) Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A {Caenorhabditis elegans [TaxId: 6239]}
Probab=42.43 E-value=11 Score=18.88 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=17.6
Q ss_pred ceecceeeeeeec-CCCceeeeeeee
Q psy16407 34 ATFQGKVYNFLER-PSGWKCFVYHFA 58 (59)
Q Consensus 34 r~~Q~rvYNFLER-P~Gwk~f~YH~~ 58 (59)
...+++.=..++| ..+||++-.|.+
T Consensus 103 ~~~~~r~T~V~~k~~g~Wkivh~H~S 128 (129)
T d2f86b1 103 HTRQSQESRVWSKKQGRWVCVHVHRS 128 (129)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred ccccEEEEEEEEEECCEEEEEEEEeC
Confidence 3445555555665 789999999976
No 5
>d3bb9a1 d.17.4.16 (A:27-147) Uncharacterized protein Sfri1973 {Shewanella frigidimarina [TaxId: 56812]}
Probab=42.16 E-value=12 Score=18.99 Aligned_cols=16 Identities=25% Similarity=0.762 Sum_probs=12.6
Q ss_pred eeecCCC-ceeeeeeee
Q psy16407 43 FLERPSG-WKCFVYHFA 58 (59)
Q Consensus 43 FLERP~G-wk~f~YH~~ 58 (59)
+..++.| ||..-.|.+
T Consensus 105 ~~r~~dG~WkIv~~H~S 121 (121)
T d3bb9a1 105 LIKQADGRWKITHVHWS 121 (121)
T ss_dssp EEECTTSCEEEEEEEEC
T ss_pred EEEccCCeEEEEEEeeC
Confidence 3466888 999999964
No 6
>d2rcda1 d.17.4.18 (A:1-127) Uncharacterized protein ECA3500 {Pectobacterium atrosepticum [TaxId: 29471]}
Probab=33.68 E-value=8.7 Score=20.28 Aligned_cols=17 Identities=24% Similarity=0.825 Sum_probs=14.4
Q ss_pred eeecCCCceeeeeeeeC
Q psy16407 43 FLERPSGWKCFVYHFAV 59 (59)
Q Consensus 43 FLERP~Gwk~f~YH~~V 59 (59)
|...+.|||-...|.++
T Consensus 109 ~~r~~ggWkIv~~H~S~ 125 (127)
T d2rcda1 109 WVKMPEGWRIVAAHVSL 125 (127)
T ss_dssp EEEETTEEEEEEEEEEE
T ss_pred EEEcCCeEEEEEEEEec
Confidence 46789999999999874
No 7
>d3d9ra1 d.17.4.27 (A:3-134) Uncharacterized protein ECA1476 {Pectobacterium atrosepticum [TaxId: 29471]}
Probab=32.70 E-value=21 Score=18.34 Aligned_cols=21 Identities=19% Similarity=0.419 Sum_probs=15.6
Q ss_pred ceeeeeeec-CCC-ceeeeeeee
Q psy16407 38 GKVYNFLER-PSG-WKCFVYHFA 58 (59)
Q Consensus 38 ~rvYNFLER-P~G-wk~f~YH~~ 58 (59)
++....++| ..| ||-.-+|+.
T Consensus 106 ~~~~~v~~r~~dG~Wki~~~~~s 128 (132)
T d3d9ra1 106 YQELFLLRKSATGSWQTARYCTS 128 (132)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEE
T ss_pred eeEEEEEEECCCCcEEEEEEEec
Confidence 444455777 788 999999985
No 8
>d1wwxa1 a.4.5.21 (A:8-101) E74-like factor 5 ese-2b {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.26 E-value=8.5 Score=22.33 Aligned_cols=16 Identities=31% Similarity=0.706 Sum_probs=13.9
Q ss_pred cceeeeeeecCCCcee
Q psy16407 37 QGKVYNFLERPSGWKC 52 (59)
Q Consensus 37 Q~rvYNFLERP~Gwk~ 52 (59)
|--+|-|++.|.||+.
T Consensus 76 ~rl~Y~F~~~~~g~~~ 91 (94)
T d1wwxa1 76 RRLVYKFGKNAHGWQE 91 (94)
T ss_dssp SSSEEEECSSCCSSCC
T ss_pred cEEEEEeCCCcccccc
Confidence 6678999999999963
No 9
>d2owpa1 d.17.4.18 (A:1-128) Hypothetical protein BxeB1374 {Burkholderia xenovorans [TaxId: 36873]}
Probab=28.40 E-value=19 Score=19.11 Aligned_cols=13 Identities=31% Similarity=0.787 Sum_probs=10.8
Q ss_pred CCCceeeeeeeeC
Q psy16407 47 PSGWKCFVYHFAV 59 (59)
Q Consensus 47 P~Gwk~f~YH~~V 59 (59)
..|||-...|+++
T Consensus 112 ~~gWrIv~~H~S~ 124 (128)
T d2owpa1 112 ADGWKIVAAHVSL 124 (128)
T ss_dssp TTCEEEEEEEEEE
T ss_pred CCCEEEEEEeecC
Confidence 5679999999864
No 10
>d1yuaa2 g.41.3.3 (A:66-122) Prokaryotic DNA topoisomerase I, a C-terminal fragment {Escherichia coli [TaxId: 562]}
Probab=27.08 E-value=9.9 Score=20.56 Aligned_cols=32 Identities=16% Similarity=0.417 Sum_probs=18.6
Q ss_pred hcccceeeeecccccceecceeeeeeecCCCceee
Q psy16407 19 FDSHYLVKYSHRRAGATFQGKVYNFLERPSGWKCF 53 (59)
Q Consensus 19 ~~~ry~~~~~~~~~rr~~Q~rvYNFLERP~Gwk~f 53 (59)
=+.++.+.+|+.-.--++++-+ ==+++||++|
T Consensus 15 dGn~~vvRfsRK~k~qYv~sE~---dGK~TgW~a~ 46 (57)
T d1yuaa2 15 EGNKTMVRFSRKTKQQYVSSEK---DGKATGWSAF 46 (57)
T ss_dssp TCCCEEEEEETTTTEEEEEECC---TTSCCCCCEE
T ss_pred CCCEeEEEEecCCCeEEEEeec---CCcccccEEE
Confidence 3456666554433335555543 1489999776
No 11
>d1sxra_ d.118.1.1 (A:) Peptidoglycan-recognition protein-SA (Cg11709) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=25.65 E-value=5.9 Score=23.47 Aligned_cols=13 Identities=15% Similarity=0.427 Sum_probs=11.0
Q ss_pred CCCceeeeeeeeC
Q psy16407 47 PSGWKCFVYHFAV 59 (59)
Q Consensus 47 P~Gwk~f~YH~~V 59 (59)
=+||.-+.|||+|
T Consensus 58 ~~gw~digYhf~I 70 (173)
T d1sxra_ 58 ELDFNDISYNFLI 70 (173)
T ss_dssp TSCCSSCSSSEEE
T ss_pred hcCCCCcccEEEE
Confidence 3799999999975
No 12
>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.15 E-value=14 Score=17.23 Aligned_cols=9 Identities=33% Similarity=0.852 Sum_probs=6.7
Q ss_pred ecCCCceee
Q psy16407 45 ERPSGWKCF 53 (59)
Q Consensus 45 ERP~Gwk~f 53 (59)
|.|.||.+.
T Consensus 1 ~LP~GW~~~ 9 (34)
T d1pina1 1 KLPPGWEKR 9 (34)
T ss_dssp CCCTTEEEE
T ss_pred CcCCCcEEE
Confidence 578899764
No 13
>d2f2lx1 d.118.1.1 (X:335-499) Peptidoglycan-recognition protein-LC {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=22.03 E-value=8 Score=22.41 Aligned_cols=13 Identities=38% Similarity=0.846 Sum_probs=11.2
Q ss_pred CCCceeeeeeeeC
Q psy16407 47 PSGWKCFVYHFAV 59 (59)
Q Consensus 47 P~Gwk~f~YH~~V 59 (59)
-.||.-+.||++|
T Consensus 57 ~~gw~dIgYh~~I 69 (165)
T d2f2lx1 57 SWGWDHIGYNFLV 69 (165)
T ss_dssp TSCCSSCSCSEEE
T ss_pred ccCCCCcCceEEE
Confidence 4799999999985
No 14
>d1ycka1 d.118.1.1 (A:9-175) Peptidoglycan recognition protein, PGRP-S {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.70 E-value=8.1 Score=22.49 Aligned_cols=13 Identities=31% Similarity=0.705 Sum_probs=11.2
Q ss_pred CCCceeeeeeeeC
Q psy16407 47 PSGWKCFVYHFAV 59 (59)
Q Consensus 47 P~Gwk~f~YH~~V 59 (59)
-.||.-+.|||+|
T Consensus 58 ~~gw~digYh~lI 70 (167)
T d1ycka1 58 TLGWCDVGYNFLI 70 (167)
T ss_dssp TTCCSSCSCSEEE
T ss_pred hcCCCCCCCeEEE
Confidence 4799999999975
No 15
>d2gbsa1 b.122.1.8 (A:2-137) Hypothetical protein RPA0253 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=21.68 E-value=9.1 Score=23.08 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=14.7
Q ss_pred ceecceeeeee--ecCCCceeeeee
Q psy16407 34 ATFQGKVYNFL--ERPSGWKCFVYH 56 (59)
Q Consensus 34 r~~Q~rvYNFL--ERP~Gwk~f~YH 56 (59)
|..|+| ||| -++ |=.||+||
T Consensus 31 RNyqAr--n~mr~M~~-GD~~~fYH 52 (136)
T d2gbsa1 31 RNHSAK--LHMVAMRR-GDRAFYYH 52 (136)
T ss_dssp CCHHHH--HHHHHCCT-TCEEEEEE
T ss_pred ccHHHH--HHHHHhcc-CCEEEEEe
Confidence 677887 775 355 55699999
No 16
>d1n8fa_ c.1.10.4 (A:) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Escherichia coli, phenylalanine-regulated isozyme [TaxId: 562]}
Probab=20.79 E-value=8.5 Score=26.85 Aligned_cols=13 Identities=38% Similarity=1.191 Sum_probs=10.5
Q ss_pred eeecCC---Cceeeee
Q psy16407 43 FLERPS---GWKCFVY 55 (59)
Q Consensus 43 FLERP~---Gwk~f~Y 55 (59)
++|||| |||-+++
T Consensus 87 YfEKPRTtvGWKGli~ 102 (343)
T d1n8fa_ 87 YFEKPRTTVGWKGLIN 102 (343)
T ss_dssp CCCCCCSSSSCCCTTT
T ss_pred cccCCCccCCcchhcc
Confidence 489996 9998764
No 17
>d2r4ia1 d.17.4.15 (A:1-122) Uncharacterized protein CHU142 {Cytophaga hutchinsonii [TaxId: 985]}
Probab=20.57 E-value=26 Score=17.74 Aligned_cols=16 Identities=13% Similarity=0.204 Sum_probs=12.9
Q ss_pred eeecCCCceeeeeeee
Q psy16407 43 FLERPSGWKCFVYHFA 58 (59)
Q Consensus 43 FLERP~Gwk~f~YH~~ 58 (59)
|.-.+.|||.+..|.+
T Consensus 104 ~~k~~g~Wkiv~~h~S 119 (122)
T d2r4ia1 104 WKLFDGNWKVIAGSCT 119 (122)
T ss_dssp EEEETTEEEEEEEEEE
T ss_pred EEEECCEEEEEEEEec
Confidence 3456899999999975
Done!