Query psy16410
Match_columns 88
No_of_seqs 102 out of 473
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 20:36:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16410.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16410hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01733 Nucleoside_tran: Nucl 99.9 1.4E-27 2.9E-32 176.7 0.3 82 7-88 193-275 (309)
2 TIGR00939 2a57 Equilibrative N 99.9 7.7E-26 1.7E-30 175.5 7.1 82 7-88 318-399 (437)
3 KOG1479|consensus 99.8 1E-21 2.2E-26 152.2 6.3 77 7-88 294-370 (406)
4 KOG2504|consensus 58.6 36 0.00079 27.4 6.0 64 7-82 344-409 (509)
5 PLN02558 CDP-diacylglycerol-gl 46.8 41 0.0009 24.1 4.2 39 31-75 14-52 (203)
6 PRK03699 putative transporter; 44.8 44 0.00094 24.8 4.2 14 6-19 251-264 (394)
7 TIGR03715 KxYKxGKxW KxYKxGKxW 43.5 11 0.00023 18.8 0.5 10 2-11 9-18 (29)
8 PRK10832 phosphatidylglyceroph 39.7 68 0.0015 22.5 4.3 38 32-75 9-46 (182)
9 PTZ00468 phosphofructokinase f 36.6 17 0.00037 33.1 1.0 44 39-82 1064-1112(1328)
10 TIGR00560 pgsA CDP-diacylglyce 35.2 95 0.0021 21.7 4.5 41 32-75 7-47 (182)
11 PF03209 PUCC: PUCC protein; 31.1 1.7E+02 0.0038 23.3 5.7 24 58-81 298-321 (403)
12 cd08778 Death_TNFRSF21 Death d 27.3 21 0.00044 22.1 -0.0 11 70-80 32-42 (84)
13 PF03636 Glyco_hydro_65N: Glyc 26.3 13 0.00029 26.7 -1.2 16 67-82 15-30 (255)
14 PLN02794 cardiolipin synthase 26.3 1.3E+02 0.0028 23.6 4.1 37 31-76 147-183 (341)
15 TIGR01165 cbiN cobalt transpor 23.4 1.2E+02 0.0027 19.3 3.0 22 26-47 5-26 (91)
16 TIGR00710 efflux_Bcr_CflA drug 21.8 2.6E+02 0.0056 19.9 4.9 21 64-84 303-323 (385)
No 1
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=99.93 E-value=1.4e-27 Score=176.69 Aligned_cols=82 Identities=38% Similarity=0.791 Sum_probs=4.0
Q ss_pred hhhhhhhhhhcceecccCChhHHHHHHHHHHHHHHHHHHhcccCCCC-cCceeechHHHHHHHHHHHhhhhhhhhhhhee
Q psy16410 7 ILGLLRYWEKSYSAAPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTH-LPVLITSDLVYATIVLLMGLSNGYLANITFIC 85 (88)
Q Consensus 7 iF~l~Gr~la~~~~~p~~~~~~l~~~s~~R~ifIPlfllcn~~~~~~-~~~~~~~D~~~~i~~~lfglTNGyl~tl~m~~ 85 (88)
++|++||.++++.+||.++++++++++++|++|||+|++||++|+++ +|+.++||+++++++++||+||||++|++|||
T Consensus 193 ~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~tl~m~~ 272 (309)
T PF01733_consen 193 LGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLSTLAMMY 272 (309)
T ss_dssp --------------------------------------------------------------------------HHHH--
T ss_pred HHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhhhceeee
Confidence 68999999999999997788888899999999999999999998854 68999999999999999999999999999999
Q ss_pred ccC
Q psy16410 86 AAK 88 (88)
Q Consensus 86 ~P~ 88 (88)
||+
T Consensus 273 ~p~ 275 (309)
T PF01733_consen 273 APK 275 (309)
T ss_dssp ---
T ss_pred CCC
Confidence 996
No 2
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=99.92 E-value=7.7e-26 Score=175.49 Aligned_cols=82 Identities=33% Similarity=0.649 Sum_probs=77.8
Q ss_pred hhhhhhhhhhcceecccCChhHHHHHHHHHHHHHHHHHHhcccCCCCcCceeechHHHHHHHHHHHhhhhhhhhhhheec
Q psy16410 7 ILGLLRYWEKSYSAAPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLANITFICA 86 (88)
Q Consensus 7 iF~l~Gr~la~~~~~p~~~~~~l~~~s~~R~ifIPlfllcn~~~~~~~~~~~~~D~~~~i~~~lfglTNGyl~tl~m~~~ 86 (88)
++|++||.++.+.+||+++.+++++++++|++|||+|++||++++++.|+.+++|+++++++++||+||||++|++||||
T Consensus 318 vgD~vGR~~~~~~~~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy~~s~~m~~~ 397 (437)
T TIGR00939 318 LFDWLGRSLTSKFMWPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGYLGSLSMCLA 397 (437)
T ss_pred HHHHHHhhhhheeEeeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 68999999999999998776788899999999999999999999888899999999999999999999999999999999
Q ss_pred cC
Q psy16410 87 AK 88 (88)
Q Consensus 87 P~ 88 (88)
||
T Consensus 398 p~ 399 (437)
T TIGR00939 398 PR 399 (437)
T ss_pred CC
Confidence 97
No 3
>KOG1479|consensus
Probab=99.85 E-value=1e-21 Score=152.20 Aligned_cols=77 Identities=34% Similarity=0.603 Sum_probs=70.6
Q ss_pred hhhhhhhhhhcceecccCChhHHHHHHHHHHHHHHHHHHhcccCCCCcCceeechHHHHHHHHHHHhhhhhhhhhhheec
Q psy16410 7 ILGLLRYWEKSYSAAPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLANITFICA 86 (88)
Q Consensus 7 iF~l~Gr~la~~~~~p~~~~~~l~~~s~~R~ifIPlfllcn~~~~~~~~~~~~~D~~~~i~~~lfglTNGyl~tl~m~~~ 86 (88)
+||++|+.++.+.+||++|.. .+.+++|++|||+|.+||++| .|+.+++|+++++++.+||+||||+++++||+|
T Consensus 294 ~~d~vG~~~a~~~~~~~~r~l--~i~v~lR~lfiPlF~~cn~~~---~~v~~~~~~~~~~l~~~lglsnGYltsl~m~~a 368 (406)
T KOG1479|consen 294 VFDLIGSILAALLTWPDPRKL--TIPVLLRLLFIPLFLLCNYPP---LPVVFESDGWFIFLMSLLGLSNGYLTSLIMMYA 368 (406)
T ss_pred HHHHhhhhhhhcccCCCCcee--hHHHHHHHHHHHHHHHhccCC---CCceecCchHHHHHHHHHHhccchHhhheehhc
Confidence 689999999999999876654 455999999999999999987 579999999999999999999999999999999
Q ss_pred cC
Q psy16410 87 AK 88 (88)
Q Consensus 87 P~ 88 (88)
||
T Consensus 369 Pk 370 (406)
T KOG1479|consen 369 PK 370 (406)
T ss_pred CC
Confidence 97
No 4
>KOG2504|consensus
Probab=58.55 E-value=36 Score=27.35 Aligned_cols=64 Identities=13% Similarity=0.197 Sum_probs=42.7
Q ss_pred hhhhhhhhhhcce-ecccCChhHHHHHHHHHHHHHHHHHHhcccCCCCcCceeech-HHHHHHHHHHHhhhhhhhhhh
Q psy16410 7 ILGLLRYWEKSYS-AAPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSD-LVYATIVLLMGLSNGYLANIT 82 (88)
Q Consensus 7 iF~l~Gr~la~~~-~~p~~~~~~l~~~s~~R~ifIPlfllcn~~~~~~~~~~~~~D-~~~~i~~~lfglTNGyl~tl~ 82 (88)
+.|.+||.+.++. ..+..+.+++..+++.....-.+++ - +..+ +..+...+++|++-|+..++.
T Consensus 344 i~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~--p----------~~~~~~~l~~~~~~fG~~~g~~~~l~ 409 (509)
T KOG2504|consen 344 VSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFL--P----------FATTYVGLIVFSILFGFCVGSFSSLT 409 (509)
T ss_pred HhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHH--H----------HhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999995 4544455666666655544433222 2 1233 457888999999999988765
No 5
>PLN02558 CDP-diacylglycerol-glycerol-3-phosphate/ 3-phosphatidyltransferase
Probab=46.76 E-value=41 Score=24.11 Aligned_cols=39 Identities=10% Similarity=0.208 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCcCceeechHHHHHHHHHHHhhh
Q psy16410 31 LFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSN 75 (88)
Q Consensus 31 ~~s~~R~ifIPlfllcn~~~~~~~~~~~~~D~~~~i~~~lfglTN 75 (88)
.++++|++.+|+|+.+-..+.. .+.+....+.++.++|.
T Consensus 14 ~LT~~RI~liP~~~~l~~~~~~------~~~~~A~~lf~~a~lTD 52 (203)
T PLN02558 14 VLTLGRVAAVPLLVATFYVDSW------WGRTATTSIFIAAAITD 52 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHhch------hHHHHHHHHHHHHHHHH
Confidence 4488999999998876543211 12244455566677775
No 6
>PRK03699 putative transporter; Provisional
Probab=44.85 E-value=44 Score=24.76 Aligned_cols=14 Identities=21% Similarity=0.681 Sum_probs=10.2
Q ss_pred hhhhhhhhhhhcce
Q psy16410 6 WILGLLRYWEKSYS 19 (88)
Q Consensus 6 ~iF~l~Gr~la~~~ 19 (88)
++...+||.+.++.
T Consensus 251 ~~~~~ig~~~~g~l 264 (394)
T PRK03699 251 WMAYMVGMWIFSFI 264 (394)
T ss_pred HHHHHHHHHHHHHH
Confidence 45667888888775
No 7
>TIGR03715 KxYKxGKxW KxYKxGKxW signal peptide. This model describes a novel form of signal peptide that occurs as an N-terminal domain with a recognizable motif, reminiscent of the YSIRK and PEP-CTERM forms of signal peptide. This domain tends to occur on long, low-complexity (usually Serine-rich and heavily glycosylated) proteins of the Firmicutes, and (as with YSIRK) the majority of these proteins have the LPXTG cell wall-anchoring motif at the C-terminus.
Probab=43.50 E-value=11 Score=18.79 Aligned_cols=10 Identities=30% Similarity=1.046 Sum_probs=6.8
Q ss_pred ccchhhhhhh
Q psy16410 2 VGKHWILGLL 11 (88)
Q Consensus 2 ~~~~~iF~l~ 11 (88)
.||||++.-+
T Consensus 9 sGK~Wv~a~~ 18 (29)
T TIGR03715 9 SGKQWVFAAI 18 (29)
T ss_pred cccHHHHHHH
Confidence 4788887643
No 8
>PRK10832 phosphatidylglycerophosphate synthetase; Provisional
Probab=39.72 E-value=68 Score=22.53 Aligned_cols=38 Identities=21% Similarity=0.400 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHhcccCCCCcCceeechHHHHHHHHHHHhhh
Q psy16410 32 FSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSN 75 (88)
Q Consensus 32 ~s~~R~ifIPlfllcn~~~~~~~~~~~~~D~~~~i~~~lfglTN 75 (88)
++.+|++.+|.++.+-+.+.+ .+.+...++.++-|+|.
T Consensus 9 lT~~Ri~l~P~~~~~~~~~~~------~~~~~a~~lf~~a~~TD 46 (182)
T PRK10832 9 LTLFRVILIPFFVLVFYLPFT------WAPFVCALIFCVAAVTD 46 (182)
T ss_pred HHHHHHHHHHHHHHHHHHccc------hHHHHHHHHHHHHHHHH
Confidence 488999999998766543211 12244455556666765
No 9
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=36.57 E-value=17 Score=33.06 Aligned_cols=44 Identities=23% Similarity=0.310 Sum_probs=33.0
Q ss_pred HHHHHHHhcccCCCCcCceeechHHHHH-----HHHHHHhhhhhhhhhh
Q psy16410 39 FMPLVLLCNIQPRTHLPVLITSDLVYAT-----IVLLMGLSNGYLANIT 82 (88)
Q Consensus 39 fIPlfllcn~~~~~~~~~~~~~D~~~~i-----~~~lfglTNGyl~tl~ 82 (88)
|=|.--++.||.|..+|.-|+.|+.|.+ ..+.-|+||||.+++-
T Consensus 1064 f~~~~HffGYegR~~~Ps~FD~~y~y~lG~~A~~li~~g~~~Gym~~i~ 1112 (1328)
T PTZ00468 1064 MNPVCFSFTDQVRACIPSDFDSTLGLMYGMLASKIINSNLVGGYVTGIK 1112 (1328)
T ss_pred cceeeccccccccCCCCCcCchHHHHHHHHHHHHHHHCCCCceEEEEec
Confidence 4455566778888889999999998754 3444578899998863
No 10
>TIGR00560 pgsA CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. Alternate names: phosphatidylglycerophosphate synthase; glycerophosphate phosphatidyltransferase; PGP synthase. A number of related enzymes are quite similar in both sequence and catalytic activity, including Saccharamyces cerevisiae YDL142c, now known to be a cardiolipin synthase. There may be problems with incorrect transitive annotation of near homologs as authentic CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase.
Probab=35.22 E-value=95 Score=21.68 Aligned_cols=41 Identities=12% Similarity=0.351 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHhcccCCCCcCceeechHHHHHHHHHHHhhh
Q psy16410 32 FSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSN 75 (88)
Q Consensus 32 ~s~~R~ifIPlfllcn~~~~~~~~~~~~~D~~~~i~~~lfglTN 75 (88)
++++|++.+|.++.+-..+..+ .-.+.+....+.++-++|.
T Consensus 7 lT~~Ri~l~p~~~~~~~~~~~~---~~~~~~~a~~l~~~a~~tD 47 (182)
T TIGR00560 7 LTLFRIIALPIFILFFLENVLP---IQVSPFIGALLFIFAAVTD 47 (182)
T ss_pred HHHHHHHHHHHHHHHHHHhccc---chhhHHHHHHHHHHHHHHH
Confidence 4889999999877654321110 0012244455555566664
No 11
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=31.12 E-value=1.7e+02 Score=23.29 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=19.9
Q ss_pred eechHHHHHHHHHHHhhhhhhhhh
Q psy16410 58 ITSDLVYATIVLLMGLSNGYLANI 81 (88)
Q Consensus 58 ~~~D~~~~i~~~lfglTNGyl~tl 81 (88)
..+++....-.+++|+.||.++.-
T Consensus 298 ~~~~~~~~~~~~l~G~g~G~f~vg 321 (403)
T PF03209_consen 298 LGSPWLFRPGVFLLGLGNGLFTVG 321 (403)
T ss_pred cccchHHHHHHHHHHHhhhHHHHH
Confidence 457888888999999999998653
No 12
>cd08778 Death_TNFRSF21 Death domain of tumor necrosis factor receptor superfamily member 21. Death domain (DD) found in tumor necrosis factor receptor superfamily member 21 (TNFRSF21), also called death receptor-6, DR6. DR6 is an orphan receptor that is expressed ubiquitously, but shows high expression in lymphoid organs, heart, brain and pancreas. Results from DR6(-/-) mice indicate that DR6 plays an important regulatory role for the generation of adaptive immunity. It may also be involved in tumor cell survival and immune evasion. In neuronal cells, it binds beta-amyloid precursor protein (APP) and activates caspase-dependent cell death. It may contribute to the pathogenesis of Alzheimer's disease. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitme
Probab=27.26 E-value=21 Score=22.11 Aligned_cols=11 Identities=45% Similarity=0.827 Sum_probs=8.1
Q ss_pred HHHhhhhhhhh
Q psy16410 70 LMGLSNGYLAN 80 (88)
Q Consensus 70 lfglTNGyl~t 80 (88)
+-+|||||.+-
T Consensus 32 vaafsngytad 42 (84)
T cd08778 32 VAAFSNGYTAD 42 (84)
T ss_pred HHHHcCCCccc
Confidence 45889999753
No 13
>PF03636 Glyco_hydro_65N: Glycosyl hydrolase family 65, N-terminal domain ; InterPro: IPR005196 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The family of glycosyl hydrolases (GH65 from CAZY) containing this domain includes vacuolar acid trehalase and maltose phosphorylase. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. This domain is believed to be essential for catalytic activity [] although its precise function remains unknown.; GO: 0003824 catalytic activity, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 1H54_A.
Probab=26.29 E-value=13 Score=26.75 Aligned_cols=16 Identities=38% Similarity=0.443 Sum_probs=10.4
Q ss_pred HHHHHHhhhhhhhhhh
Q psy16410 67 IVLLMGLSNGYLANIT 82 (88)
Q Consensus 67 ~~~lfglTNGyl~tl~ 82 (88)
.-.+|++.|||++...
T Consensus 15 ~Eslf~lgNGylG~RG 30 (255)
T PF03636_consen 15 YESLFTLGNGYLGVRG 30 (255)
T ss_dssp HHHHT-EE-SSEEE--
T ss_pred eeeeEEEeCCceEEeE
Confidence 5678999999998764
No 14
>PLN02794 cardiolipin synthase
Probab=26.26 E-value=1.3e+02 Score=23.63 Aligned_cols=37 Identities=27% Similarity=0.198 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCcCceeechHHHHHHHHHHHhhhh
Q psy16410 31 LFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNG 76 (88)
Q Consensus 31 ~~s~~R~ifIPlfllcn~~~~~~~~~~~~~D~~~~i~~~lfglTNG 76 (88)
.++++|++++|+++.+-.+. +.....++.++-|+|..
T Consensus 147 lLTl~RIlLvP~~i~~~l~~---------~~~~A~~lfiiAglTD~ 183 (341)
T PLN02794 147 LISISRLVSGPVIGWMIVNE---------MYLSAFVGLAISGASDW 183 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHh---------hHHHHHHHHHHHHHHHH
Confidence 44889999999998755321 12234445555677753
No 15
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=23.35 E-value=1.2e+02 Score=19.34 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhc
Q psy16410 26 GWWVLLFSISRFVFMPLVLLCN 47 (88)
Q Consensus 26 ~~~l~~~s~~R~ifIPlfllcn 47 (88)
+.+++++.+.=++++|+++.-+
T Consensus 5 ~~~~ll~~v~~l~~~pl~~~~~ 26 (91)
T TIGR01165 5 KTIWLLAAVAALVVLPLLIYAG 26 (91)
T ss_pred hhHHHHHHHHHHHHHHHHhccC
Confidence 3444555566678999999876
No 16
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=21.76 E-value=2.6e+02 Score=19.93 Aligned_cols=21 Identities=14% Similarity=0.426 Sum_probs=12.9
Q ss_pred HHHHHHHHHhhhhhhhhhhhe
Q psy16410 64 YATIVLLMGLSNGYLANITFI 84 (88)
Q Consensus 64 ~~i~~~lfglTNGyl~tl~m~ 84 (88)
.+..+++.|+.+|-.....+.
T Consensus 303 ~~~~~~~~g~~~~~~~~~~~~ 323 (385)
T TIGR00710 303 IIGPMMFVGIGNSMISSIAMA 323 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777766555543
Done!