Query psy16410
Match_columns 88
No_of_seqs 102 out of 473
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 20:36:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16410.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16410hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h54_A Maltose phosphorylase; 10.1 32 0.0011 27.9 -1.6 17 66-82 24-40 (754)
2 2iii_A S-adenosylmethionine de 6.8 47 0.0016 21.3 -1.6 12 2-13 5-16 (135)
3 2zxe_B Na+,K+-ATPase beta subu 6.6 3.9E+02 0.013 19.3 3.1 10 10-19 25-34 (305)
4 3iz6_D 40S ribosomal protein S 6.6 1.3E+02 0.0044 21.7 0.4 33 4-36 16-49 (265)
5 1pw4_A Glycerol-3-phosphate tr 6.3 5.1E+02 0.017 17.6 3.5 21 60-80 345-365 (451)
6 2sqc_A Squalene-hopene cyclase 5.7 3.4E+02 0.012 21.1 2.5 20 33-52 168-187 (631)
7 2xzm_W 40S ribosomal protein S 5.6 70 0.0024 23.0 -1.4 34 3-36 15-49 (260)
8 2kog_A Vesicle-associated memb 5.0 3.8E+02 0.013 16.5 1.9 8 39-46 111-118 (119)
9 3ixz_B Potassium-transporting 4.6 5.9E+02 0.02 18.2 3.0 10 10-19 29-38 (290)
10 3kdp_B Sodium/potassium-transp 4.6 6.4E+02 0.022 17.9 3.2 10 10-19 7-16 (286)
No 1
>1h54_A Maltose phosphorylase; hydrolase, maltose metabolism; 2.15A {Lactobacillus brevis} SCOP: a.102.1.4 b.30.5.3
Probab=10.06 E-value=32 Score=27.85 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=14.1
Q ss_pred HHHHHHHhhhhhhhhhh
Q psy16410 66 TIVLLMGLSNGYLANIT 82 (88)
Q Consensus 66 i~~~lfglTNGyl~tl~ 82 (88)
..-.+|+++|||++...
T Consensus 24 ~~Esl~slgNGylG~Rg 40 (754)
T 1h54_A 24 LQESMTSLGNGYMGMRG 40 (754)
T ss_dssp HHHHHTCEECSSEEECC
T ss_pred ceeeeeeeccCceEEec
Confidence 46788999999998764
No 2
>2iii_A S-adenosylmethionine decarboxylase proenzyme; two-layer alpha beta-sandwich, structural genomics, NPPSFA; 2.30A {Aquifex aeolicus}
Probab=6.75 E-value=47 Score=21.33 Aligned_cols=12 Identities=25% Similarity=0.393 Sum_probs=10.3
Q ss_pred ccchhhhhhhhh
Q psy16410 2 VGKHWILGLLRY 13 (88)
Q Consensus 2 ~~~~~iF~l~Gr 13 (88)
+|+|++.|+-|.
T Consensus 5 ~G~Hli~dlygc 16 (135)
T 2iii_A 5 LGLHILADLYGV 16 (135)
T ss_dssp EEEEEEEEEESC
T ss_pred eeEEEEEEEeCC
Confidence 689999999885
No 3
>2zxe_B Na+,K+-ATPase beta subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_B* 3b8e_B*
Probab=6.64 E-value=3.9e+02 Score=19.33 Aligned_cols=10 Identities=20% Similarity=0.086 Sum_probs=5.3
Q ss_pred hhhhhhhcce
Q psy16410 10 LLRYWEKSYS 19 (88)
Q Consensus 10 l~Gr~la~~~ 19 (88)
++||...+|.
T Consensus 25 ~lGRT~~sW~ 34 (305)
T 2zxe_B 25 FLGRTGSSWF 34 (305)
T ss_dssp ---CCSTTHH
T ss_pred EecccHHHHH
Confidence 7888888774
No 4
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=6.60 E-value=1.3e+02 Score=21.72 Aligned_cols=33 Identities=30% Similarity=0.436 Sum_probs=4.7
Q ss_pred chhhhh-hhhhhhhcceecccCChhHHHHHHHHH
Q psy16410 4 KHWILG-LLRYWEKSYSAAPRNNGWWVLLFSISR 36 (88)
Q Consensus 4 ~~~iF~-l~Gr~la~~~~~p~~~~~~l~~~s~~R 36 (88)
|||.-| +.|.|.+.-..-|-+....++.+.++|
T Consensus 16 ~~W~l~kk~~~fa~rpspGPHkl~eslPL~i~LR 49 (265)
T 3iz6_D 16 KHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIR 49 (265)
T ss_dssp ---------------------------CHHHHHH
T ss_pred cccccccccceeccCCCCCCCcchhheeeHHHhh
Confidence 688877 445555533333323334566666667
No 5
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=6.25 E-value=5.1e+02 Score=17.60 Aligned_cols=21 Identities=10% Similarity=-0.043 Sum_probs=13.2
Q ss_pred chHHHHHHHHHHHhhhhhhhh
Q psy16410 60 SDLVYATIVLLMGLSNGYLAN 80 (88)
Q Consensus 60 ~D~~~~i~~~lfglTNGyl~t 80 (88)
+.+...+..+++|+..+...+
T Consensus 345 ~~~~~~~~~~~~g~~~~~~~~ 365 (451)
T 1pw4_A 345 NPTVDMICMIVIGFLIYGPVM 365 (451)
T ss_dssp CHHHHHHHHHHHHHHHTHHHH
T ss_pred CHHHHHHHHHHHHHHHhchHH
Confidence 445566677777776665544
No 6
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=5.73 E-value=3.4e+02 Score=21.06 Aligned_cols=20 Identities=25% Similarity=0.288 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHhcccCCC
Q psy16410 33 SISRFVFMPLVLLCNIQPRT 52 (88)
Q Consensus 33 s~~R~ifIPlfllcn~~~~~ 52 (88)
+-+|.+++|+.++++.++..
T Consensus 168 ~~~R~~~~P~~~l~~~r~~~ 187 (631)
T 2sqc_A 168 SWARATVVALSIVMSRQPVF 187 (631)
T ss_dssp HHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHhHHHHhhCCCcc
Confidence 44699999999999776644
No 7
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=5.55 E-value=70 Score=23.04 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=19.9
Q ss_pred cchhhhh-hhhhhhhcceecccCChhHHHHHHHHH
Q psy16410 3 GKHWILG-LLRYWEKSYSAAPRNNGWWVLLFSISR 36 (88)
Q Consensus 3 ~~~~iF~-l~Gr~la~~~~~p~~~~~~l~~~s~~R 36 (88)
-|||.-| +.|.|.+.-.+.|-+....++.+.++|
T Consensus 15 P~~W~l~kk~~~~a~rpspGPH~~~eslPL~i~LR 49 (260)
T 2xzm_W 15 PKSWMLNKLGGIWATRPSQGPHKLRESLPLSVLLK 49 (260)
T ss_dssp CGGGTCCSSSCSBCCCCCSSSSCSSSCEEHHHHHT
T ss_pred CccceeccccceEccCCCCCCCccceeehhHhhhh
Confidence 3789888 888887755444423233455445555
No 8
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=4.96 E-value=3.8e+02 Score=16.50 Aligned_cols=8 Identities=13% Similarity=0.384 Sum_probs=3.2
Q ss_pred HHHHHHHh
Q psy16410 39 FMPLVLLC 46 (88)
Q Consensus 39 fIPlfllc 46 (88)
++-....|
T Consensus 111 ~iIi~~~c 118 (119)
T 2kog_A 111 IIIIVYFS 118 (119)
T ss_dssp HHHHHHHH
T ss_pred HHhhhhee
Confidence 33334444
No 9
>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_B 2xzb_B
Probab=4.64 E-value=5.9e+02 Score=18.18 Aligned_cols=10 Identities=10% Similarity=0.026 Sum_probs=7.6
Q ss_pred hhhhhhhcce
Q psy16410 10 LLRYWEKSYS 19 (88)
Q Consensus 10 l~Gr~la~~~ 19 (88)
++||...+|.
T Consensus 29 ~lGRT~~sW~ 38 (290)
T 3ixz_B 29 MLGRTLSRWV 38 (290)
T ss_pred eeCcchhhHH
Confidence 7788888774
No 10
>3kdp_B Sodium/potassium-transporting ATPase subunit beta; alpha helical, heterotrimeric membrane protein complex, ATP- hydrolase, ION transport, magnesium; HET: CLR; 3.50A {Sus scrofa} PDB: 3n2f_B* 3n23_B*
Probab=4.62 E-value=6.4e+02 Score=17.94 Aligned_cols=10 Identities=20% Similarity=0.046 Sum_probs=7.4
Q ss_pred hhhhhhhcce
Q psy16410 10 LLRYWEKSYS 19 (88)
Q Consensus 10 l~Gr~la~~~ 19 (88)
++||...+|.
T Consensus 7 ~lGRT~~sW~ 16 (286)
T 3kdp_B 7 FLGRTGGSWF 16 (286)
T ss_dssp TSCSSCSCCH
T ss_pred eeCccHhHHH
Confidence 6788888774
Done!