Query psy16410
Match_columns 88
No_of_seqs 102 out of 473
Neff 6.2
Searched_HMMs 13730
Date Fri Aug 16 20:36:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16410.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16410hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1h54a2 b.30.5.3 (A:1-268) Lac 32.7 2.1 0.00015 28.0 -1.6 17 66-82 24-40 (268)
2 d1skyb1 a.69.1.1 (B:372-502) F 29.9 8.8 0.00064 22.9 1.1 18 66-83 62-79 (131)
3 d1fx0a1 a.69.1.1 (A:373-501) F 24.3 12 0.00084 22.3 0.9 17 66-82 62-78 (129)
4 d2jdia1 a.69.1.1 (A:380-510) F 22.4 15 0.0011 21.7 1.2 17 66-82 62-78 (131)
5 d1vr7a1 d.156.1.2 (A:2-118) S- 14.9 8.8 0.00064 22.3 -1.3 12 2-13 3-14 (117)
6 d1pw4a_ f.38.1.1 (A:) Glycerol 11.5 1.8E+02 0.013 18.1 5.5 19 60-78 342-360 (447)
7 d1pv7a_ f.38.1.2 (A:) Lactose 8.6 1.5E+02 0.011 17.8 3.2 24 59-82 310-333 (417)
8 d1zd3a1 c.108.1.2 (A:2-224) Ep 6.9 35 0.0025 19.6 -0.6 11 4-14 3-13 (225)
9 d2fi1a1 c.108.1.3 (A:4-190) Pu 6.6 43 0.0031 19.4 -0.3 15 1-15 1-15 (187)
10 d1w6ka2 a.102.4.2 (A:100-378) 6.4 1.6E+02 0.011 19.4 2.6 19 33-51 132-150 (279)
No 1
>d1h54a2 b.30.5.3 (A:1-268) Lactobacillus maltose phosphorylase, N-terminal domain {Lactobacillus brevis [TaxId: 1580]}
Probab=32.67 E-value=2.1 Score=28.01 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=13.7
Q ss_pred HHHHHHHhhhhhhhhhh
Q psy16410 66 TIVLLMGLSNGYLANIT 82 (88)
Q Consensus 66 i~~~lfglTNGyl~tl~ 82 (88)
..-.+|++.|||++...
T Consensus 24 ~~Eslf~lgNGylG~RG 40 (268)
T d1h54a2 24 LQESMTSLGNGYMGMRG 40 (268)
T ss_dssp HHHHHTCEECSSEEECC
T ss_pred ceeeEEEEecCccEecc
Confidence 45678999999998754
No 2
>d1skyb1 a.69.1.1 (B:372-502) F1 ATP synthase alpha subunit, domain 3 {Bacillus sp., strain ps3 [TaxId: 1409]}
Probab=29.88 E-value=8.8 Score=22.93 Aligned_cols=18 Identities=22% Similarity=0.711 Sum_probs=14.3
Q ss_pred HHHHHHHhhhhhhhhhhh
Q psy16410 66 TIVLLMGLSNGYLANITF 83 (88)
Q Consensus 66 i~~~lfglTNGyl~tl~m 83 (88)
-.+++++.+|||+-.+.+
T Consensus 62 Qv~iLyA~~~G~LD~Ipv 79 (131)
T d1skyb1 62 QVLIIYALTRGFLDDIPV 79 (131)
T ss_dssp HHHHHHHTTTTTTTTSCG
T ss_pred HHHHHHHHhCCccccCcH
Confidence 457889999999977653
No 3
>d1fx0a1 a.69.1.1 (A:373-501) F1 ATP synthase alpha subunit, domain 3 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}
Probab=24.30 E-value=12 Score=22.30 Aligned_cols=17 Identities=24% Similarity=0.540 Sum_probs=13.1
Q ss_pred HHHHHHHhhhhhhhhhh
Q psy16410 66 TIVLLMGLSNGYLANIT 82 (88)
Q Consensus 66 i~~~lfglTNGyl~tl~ 82 (88)
=.+++++.+|||+-.+.
T Consensus 62 Qv~iLyA~~~G~LD~ip 78 (129)
T d1fx0a1 62 QVMTIYTGTNGYLDSLE 78 (129)
T ss_dssp HHHHHHHHHTTSSSSSC
T ss_pred HHHHHHHHHcCccccCC
Confidence 35778999999986654
No 4
>d2jdia1 a.69.1.1 (A:380-510) F1 ATP synthase alpha subunit, domain 3 {Cow (Bos taurus) [TaxId: 9913]}
Probab=22.38 E-value=15 Score=21.73 Aligned_cols=17 Identities=18% Similarity=0.483 Sum_probs=13.5
Q ss_pred HHHHHHHhhhhhhhhhh
Q psy16410 66 TIVLLMGLSNGYLANIT 82 (88)
Q Consensus 66 i~~~lfglTNGyl~tl~ 82 (88)
-.+++++.+|||+-.+.
T Consensus 62 Qv~iL~A~~~G~lD~i~ 78 (131)
T d2jdia1 62 QVAVIYAGVRGYLDKLE 78 (131)
T ss_dssp HHHHHHHHHTTTTTTSC
T ss_pred HHHHHHHHhcCCccccC
Confidence 45778899999997654
No 5
>d1vr7a1 d.156.1.2 (A:2-118) S-adenosylmethionine decarboxylase (SamDC, SpeH) {Thermotoga maritima [TaxId: 2336]}
Probab=14.86 E-value=8.8 Score=22.34 Aligned_cols=12 Identities=17% Similarity=0.540 Sum_probs=10.2
Q ss_pred ccchhhhhhhhh
Q psy16410 2 VGKHWILGLLRY 13 (88)
Q Consensus 2 ~~~~~iF~l~Gr 13 (88)
+|+|++.|+-|-
T Consensus 3 ~G~Hli~Dl~~c 14 (117)
T d1vr7a1 3 LGRHLVAEFYEC 14 (117)
T ss_dssp EEEEEEEEEESC
T ss_pred ceEEEEEEEEcc
Confidence 599999998884
No 6
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=11.48 E-value=1.8e+02 Score=18.07 Aligned_cols=19 Identities=11% Similarity=-0.012 Sum_probs=10.9
Q ss_pred chHHHHHHHHHHHhhhhhh
Q psy16410 60 SDLVYATIVLLMGLSNGYL 78 (88)
Q Consensus 60 ~D~~~~i~~~lfglTNGyl 78 (88)
+.+..++.+++.|+..+-.
T Consensus 342 ~~~~~~~~~~~~g~~~~~~ 360 (447)
T d1pw4a_ 342 NPTVDMICMIVIGFLIYGP 360 (447)
T ss_dssp CHHHHHHHHHHHHHHHTHH
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 4455566666666655443
No 7
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=8.62 E-value=1.5e+02 Score=17.76 Aligned_cols=24 Identities=21% Similarity=0.044 Sum_probs=16.5
Q ss_pred echHHHHHHHHHHHhhhhhhhhhh
Q psy16410 59 TSDLVYATIVLLMGLSNGYLANIT 82 (88)
Q Consensus 59 ~~D~~~~i~~~lfglTNGyl~tl~ 82 (88)
++.+..++..+++|++.|...+..
T Consensus 310 ~~~~~~~~~~~l~g~~~~~~~~~~ 333 (417)
T d1pv7a_ 310 TSALEVVILKTLHMFEVPFLLVGC 333 (417)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHHHH
Confidence 466667777888888877655443
No 8
>d1zd3a1 c.108.1.2 (A:2-224) Epoxide hydrolase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.91 E-value=35 Score=19.58 Aligned_cols=11 Identities=9% Similarity=0.024 Sum_probs=7.5
Q ss_pred chhhhhhhhhh
Q psy16410 4 KHWILGLLRYW 14 (88)
Q Consensus 4 ~~~iF~l~Gr~ 14 (88)
|+++||+-|=.
T Consensus 3 k~vlFD~dGtL 13 (225)
T d1zd3a1 3 RAAVFDLDGVL 13 (225)
T ss_dssp CEEEECTBTTT
T ss_pred EEEEEcCCCCe
Confidence 66778877744
No 9
>d2fi1a1 c.108.1.3 (A:4-190) Putative hydrolase SP0805 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=6.64 E-value=43 Score=19.41 Aligned_cols=15 Identities=20% Similarity=0.009 Sum_probs=10.1
Q ss_pred Cccchhhhhhhhhhh
Q psy16410 1 MVGKHWILGLLRYWE 15 (88)
Q Consensus 1 ~~~~~~iF~l~Gr~l 15 (88)
|-=|++|||+-|=.+
T Consensus 1 M~~k~viFD~DGTL~ 15 (187)
T d2fi1a1 1 MKYHDYIWDLGGTLL 15 (187)
T ss_dssp CCCSEEEECTBTTTB
T ss_pred CCCCEEEEeCCCCcc
Confidence 344788888877543
No 10
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.38 E-value=1.6e+02 Score=19.40 Aligned_cols=19 Identities=16% Similarity=0.363 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhcccCC
Q psy16410 33 SISRFVFMPLVLLCNIQPR 51 (88)
Q Consensus 33 s~~R~ifIPlfllcn~~~~ 51 (88)
+-+|.+++|+.++++.++.
T Consensus 132 ~~~R~v~vPls~l~~~r~~ 150 (279)
T d1w6ka2 132 CHCRQVYLPMSYCYAVRLS 150 (279)
T ss_dssp HHHHHHHHHHHHHHHTTCC
T ss_pred hhhhhhhhhhHHHhhcccc
Confidence 5579999999999998763
Done!