RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy16410
         (88 letters)



>gnl|CDD|233199 TIGR00939, 2a57, Equilibrative Nucleoside Transporter (ENT).
           [Transport and binding proteins, Nucleosides, purines
           and pyrimidines].
          Length = 437

 Score = 60.5 bits (147), Expect = 2e-12
 Identities = 25/67 (37%), Positives = 38/67 (56%)

Query: 22  PRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLANI 81
           P  +  W+ + S  R +F+PL LLCN   R+ LPV    D  +  ++LL G SNGYL ++
Sbjct: 333 PDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGYLGSL 392

Query: 82  TFICAAK 88
           +   A +
Sbjct: 393 SMCLAPR 399


>gnl|CDD|216670 pfam01733, Nucleoside_tran, Nucleoside transporter.  This is a
           family of nucleoside transporters. In mammalian cells
           nucleoside transporters transport nucleoside across the
           plasma membrane and are essential for nucleotide
           synthesis via the salvage pathways for cells that lack
           their own de novo synthesis pathways. Also in this
           family is mouse and human nucleolar protein HNP36, a
           protein of unknown function; although it has been
           hypothesised to be a plasma membrane nucleoside
           transporter.
          Length = 305

 Score = 58.2 bits (141), Expect = 1e-11
 Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 22  PRNNGWWVLLFSISRFVFMPLVLLCNIQPRTH-LPVLITSDLVYATIVLLMGLSNGYLAN 80
           P  +  W+ + SI R +F+PL LLCN +P++  LPV   SD ++  ++ L   SNGYL++
Sbjct: 204 PGQDPRWLPVLSILRLLFIPLFLLCNYKPQSRALPVFFESDWLFIILMALFAFSNGYLSS 263

Query: 81  ITFICAAK 88
           +  + A K
Sbjct: 264 LAMMYAPK 271


>gnl|CDD|217039 pfam02446, Glyco_hydro_77, 4-alpha-glucanotransferase.  These
           enzymes EC:2.4.1.25 transfer a segment of a
           (1,4)-alpha-D-glucan to a new 4-position in an acceptor,
           which may be glucose or (1,4)-alpha-D-glucan.
          Length = 493

 Score = 28.1 bits (63), Expect = 0.58
 Identities = 12/33 (36%), Positives = 13/33 (39%), Gaps = 5/33 (15%)

Query: 7   ILGLLRYWEKSYSAAPRNNGWWVL-----LFSI 34
             G  R WE        +NG WV      LFSI
Sbjct: 287 FRGFFRLWEIPAGEKTADNGKWVKYPGDDLFSI 319


>gnl|CDD|224555 COG1640, MalQ, 4-alpha-glucanotransferase [Carbohydrate transport
           and metabolism].
          Length = 520

 Score = 26.2 bits (58), Expect = 2.8
 Identities = 8/23 (34%), Positives = 9/23 (39%)

Query: 7   ILGLLRYWEKSYSAAPRNNGWWV 29
             GL R WE  Y       G+W 
Sbjct: 305 FRGLFRLWEIPYGEDTAQGGYWR 327


>gnl|CDD|233426 TIGR01469, cobA_cysG_Cterm, uroporphyrin-III C-methyltransferase.
           This model represents enzymes, or enzyme domains, with
           uroporphyrin-III C-methyltransferase activity. This
           enzyme catalyzes the first step committed to the
           biosynthesis of either siroheme or cobalamin (vitamin
           B12) rather than protoheme (heme). Cobalamin contains
           cobalt while siroheme contains iron. Siroheme is a
           cofactor for nitrite and sulfite reductases and
           therefore plays a role in cysteine biosynthesis; many
           members of this family are CysG, siroheme synthase, with
           an additional N-terminal domain and with additional
           oxidation and iron insertion activities [Biosynthesis of
           cofactors, prosthetic groups, and carriers, Heme,
           porphyrin, and cobalamin].
          Length = 236

 Score = 24.9 bits (55), Expect = 6.5
 Identities = 7/18 (38%), Positives = 10/18 (55%), Gaps = 2/18 (11%)

Query: 65  ATIVLLMGLSNGYLANIT 82
            T+V+ MG+ N  L  I 
Sbjct: 162 GTLVIYMGVRN--LPEIA 177


>gnl|CDD|147863 pfam05941, Chordopox_A20R, Chordopoxvirus A20R protein.  This
           family consists of several Chordopoxvirus A20R proteins.
           The A20R protein is required for DNA replication, is
           associated with the processive form of the viral DNA
           polymerase, and directly interacts with the viral
           proteins encoded by the D4R, D5R, and H5R open reading
           frames. A20R may contribute to the assembly or stability
           of the multiprotein DNA replication complex.
          Length = 334

 Score = 24.6 bits (54), Expect = 8.7
 Identities = 10/33 (30%), Positives = 14/33 (42%)

Query: 28  WVLLFSISRFVFMPLVLLCNIQPRTHLPVLITS 60
            V+ F    +V +  + L  I     LP LIT 
Sbjct: 210 NVIDFFKRGYVCVKSIELEKIGDNLFLPKLITF 242


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.330    0.142    0.478 

Gapped
Lambda     K      H
   0.267   0.0778    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,515,929
Number of extensions: 365176
Number of successful extensions: 489
Number of sequences better than 10.0: 1
Number of HSP's gapped: 487
Number of HSP's successfully gapped: 32
Length of query: 88
Length of database: 10,937,602
Length adjustment: 56
Effective length of query: 32
Effective length of database: 8,453,778
Effective search space: 270520896
Effective search space used: 270520896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (24.1 bits)