RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16410
         (88 letters)



>1esw_A Amylomaltase; (beta,alpha)8-barrel, glucanotransferase,
           alpha-amylase FAMI acarbose, transferase; HET: ACR;
           1.90A {Thermus aquaticus} SCOP: c.1.8.1 PDB: 1cwy_A*
           1fp8_A 1fp9_A 2owc_A* 2oww_A* 2owx_A* 2x1i_A*
          Length = 500

 Score = 28.0 bits (63), Expect = 0.31
 Identities = 8/24 (33%), Positives = 8/24 (33%)

Query: 6   WILGLLRYWEKSYSAAPRNNGWWV 29
              G   YWE   S      G WV
Sbjct: 294 HFRGFEAYWEIPASCPTAVEGRWV 317


>1tz7_A 4-alpha-glucanotransferase; (beta, alpha)8- barrel; 2.15A {Aquifex
           aeolicus} SCOP: c.1.8.1
          Length = 505

 Score = 26.5 bits (59), Expect = 1.1
 Identities = 9/23 (39%), Positives = 9/23 (39%)

Query: 7   ILGLLRYWEKSYSAAPRNNGWWV 29
             G   YWE  Y      NG WV
Sbjct: 308 FRGFEAYWEVPYGEETAVNGRWV 330


>1x1n_A 4-alpha-glucanotransferase; disproportionating enzyme,
           amylomaltase, D-enzyme; 1.80A {Solanum tuberosum} SCOP:
           c.1.8.1
          Length = 524

 Score = 25.9 bits (57), Expect = 1.8
 Identities = 4/23 (17%), Positives = 5/23 (21%)

Query: 7   ILGLLRYWEKSYSAAPRNNGWWV 29
             G   +W           G W 
Sbjct: 323 FRGFAGFWAVPSEEKIAILGRWK 345


>2ybo_A Methyltransferase; SUMT, NIRE, heme D1 biosynthesis; HET: SAH;
           2.00A {Pseudomonas aeruginosa} PDB: 2ybq_A*
          Length = 294

 Score = 24.9 bits (55), Expect = 3.9
 Identities = 9/17 (52%), Positives = 10/17 (58%), Gaps = 2/17 (11%)

Query: 66  TIVLLMGLSNGYLANIT 82
           T+V  MGL N  LA I 
Sbjct: 188 TLVFYMGLGN--LAEIA 202


>1va0_A Uroporphyrin-III C-methyltransferase; structural genomics, riken
           structural genomics/proteomics initiative, RSGI; 1.97A
           {Thermus thermophilus} SCOP: c.90.1.1 PDB: 1v9a_A
          Length = 239

 Score = 24.8 bits (55), Expect = 4.5
 Identities = 6/17 (35%), Positives = 9/17 (52%), Gaps = 2/17 (11%)

Query: 66  TIVLLMGLSNGYLANIT 82
           T+V+LMG+       I 
Sbjct: 154 TLVVLMGVGR--RVWIA 168


>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis,
           cobalamin, SAM, SAH, uroporphyrin methyltransferase;
           HET: SAH; 2.70A {Pseudomonas denitrificans} SCOP:
           c.90.1.1
          Length = 280

 Score = 24.8 bits (55), Expect = 4.7
 Identities = 5/17 (29%), Positives = 9/17 (52%), Gaps = 2/17 (11%)

Query: 66  TIVLLMGLSNGYLANIT 82
            IV+ M + +  +  IT
Sbjct: 179 VIVMYMAMKH--IGAIT 193


>1ve2_A Uroporphyrin-III C-methyltransferase; heme, biosynthesis,
           structural genomics, NPPSFA; 1.80A {Thermus
           thermophilus} SCOP: c.90.1.1
          Length = 235

 Score = 24.7 bits (55), Expect = 4.8
 Identities = 7/17 (41%), Positives = 9/17 (52%), Gaps = 2/17 (11%)

Query: 66  TIVLLMGLSNGYLANIT 82
           T+VLLM L    L  + 
Sbjct: 155 TLVLLMPLHT--LGGLK 169


>3a1p_B 30S ribosomal protein S19; RIMM N-terminal domain, PRC-barrel
          domain, beta barrels, ribosome, 30S ribosomal subunit,
          ribosome biogenesis; 2.30A {Thermus thermophilus} PDB:
          1fka_S 1gix_V* 1hnw_S* 1hnx_S* 1hnz_S* 1hr0_S 1ibk_S*
          1ibl_S* 1ibm_S 1jgo_V* 1jgp_V* 1jgq_V* 1ml5_V* 1xmo_S*
          1xmq_S* 1xnq_S* 1xnr_S* 1yl4_V 2b64_S* 2b9m_S* ...
          Length = 93

 Score = 24.0 bits (53), Expect = 5.1
 Identities = 6/13 (46%), Positives = 10/13 (76%)

Query: 51 RTHLPVLITSDLV 63
          + H+PV IT ++V
Sbjct: 55 KQHVPVYITENMV 67


>3bbn_S Ribosomal protein S19; small ribosomal subunit, spinach
          chloroplast ribosome, ribonucleoprotein particle,
          macromolecular complex; 9.40A {Spinacea oleracea} SCOP:
          i.1.1.1
          Length = 92

 Score = 24.0 bits (53), Expect = 5.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)

Query: 51 RTHLPVLITSDLV 63
          R HLP+ IT  +V
Sbjct: 55 REHLPIYITDRMV 67


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
           fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
           RED beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 1688

 Score = 24.5 bits (53), Expect = 6.0
 Identities = 7/22 (31%), Positives = 10/22 (45%), Gaps = 1/22 (4%)

Query: 6   WILGLLRYWEKSYSAAPRNNGW 27
           WI+G + Y   +    P   GW
Sbjct: 856 WIMGFISYHNGNLKGRPY-TGW 876


>3r8n_S 30S ribosomal protein S19; protein biosynthesis, RNA, tRNA,
          transfer RNA, 16S ribosomal subunit, RRF; 3.00A
          {Escherichia coli} PDB: 2ykr_S 3fih_S* 2wwl_S 3oar_S
          3oaq_S 3ofb_S 3ofa_S 3ofp_S 3ofx_S 3ofy_S 3ofo_S 3r8o_S
          4a2i_S 2gy9_S 2gyb_S
          Length = 79

 Score = 23.2 bits (51), Expect = 8.4
 Identities = 6/13 (46%), Positives = 10/13 (76%)

Query: 51 RTHLPVLITSDLV 63
          R H+PV +T ++V
Sbjct: 53 RQHVPVFVTDEMV 65


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.330    0.142    0.478 

Gapped
Lambda     K      H
   0.267   0.0639    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,347,240
Number of extensions: 62529
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 15
Length of query: 88
Length of database: 6,701,793
Length adjustment: 56
Effective length of query: 32
Effective length of database: 5,138,217
Effective search space: 164422944
Effective search space used: 164422944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (23.6 bits)