Query psy16411
Match_columns 214
No_of_seqs 159 out of 764
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 20:37:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16411.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16411hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3736|consensus 100.0 1.3E-42 2.7E-47 328.4 5.4 149 47-213 332-483 (578)
2 KOG3738|consensus 100.0 3.8E-43 8.2E-48 316.5 1.4 166 24-213 286-458 (559)
3 KOG3736|consensus 100.0 7.3E-40 1.6E-44 309.7 4.6 182 1-207 351-555 (578)
4 KOG3738|consensus 100.0 1.4E-38 3E-43 287.0 5.5 185 1-205 329-533 (559)
5 KOG3737|consensus 100.0 3.6E-34 7.7E-39 258.3 4.3 172 24-213 326-507 (603)
6 KOG3737|consensus 100.0 3.4E-31 7.3E-36 239.1 2.8 181 1-202 369-575 (603)
7 cd02510 pp-GalNAc-T pp-GalNAc- 99.6 7.3E-16 1.6E-20 135.1 7.2 92 1-175 207-299 (299)
8 cd02510 pp-GalNAc-T pp-GalNAc- 97.3 1.8E-05 3.9E-10 69.3 -2.6 67 48-115 189-256 (299)
9 PF00652 Ricin_B_lectin: Ricin 92.4 0.021 4.5E-07 42.5 -1.4 26 187-212 88-113 (124)
10 smart00458 RICIN Ricin-type be 84.3 0.82 1.8E-05 33.5 2.3 26 187-212 78-103 (117)
11 cd00161 RICIN Ricin-type beta- 82.6 1 2.3E-05 32.6 2.3 25 188-212 86-111 (124)
12 cd00161 RICIN Ricin-type beta- 50.5 15 0.00032 26.3 2.5 25 188-212 44-68 (124)
13 PF02709 Glyco_transf_7C: N-te 34.0 3.4 7.4E-05 29.6 -3.1 40 47-86 36-76 (78)
14 PF14200 RicinB_lectin_2: Rici 27.3 42 0.00092 24.4 1.7 25 188-212 17-43 (105)
15 KOG4405|consensus 23.8 29 0.00064 33.1 0.3 18 6-24 172-189 (547)
16 PF03002 Somatostatin: Somatos 23.6 21 0.00045 18.7 -0.4 9 161-169 4-12 (18)
No 1
>KOG3736|consensus
Probab=100.00 E-value=1.3e-42 Score=328.44 Aligned_cols=149 Identities=49% Similarity=0.813 Sum_probs=136.7
Q ss_pred hhhhhhhhhhhcCCCcccceeecCccEEEeeccceeeeeecCCCCcCCCCcccccccccceeheeeecCCeeEEEeCCCC
Q psy16411 47 WMDEWRDFYYAMNPGKSASVWMCGGVLEIATCSHVGHVFRKSTPYTFPGGTSNIVNHNNARLAEVWQCGGILEIIPCSHV 126 (214)
Q Consensus 47 WmDe~~~~~y~~n~els~r~w~cGg~~e~~~Cs~v~h~~r~~~P~~~p~~~g~~~~~n~~r~aevW~~~~~l~l~pC~~~ 126 (214)
=+|++++++++||+|+|||+|||||.+|++|||+|||+||+..||.+|++. +++.+|.+|+||||||+
T Consensus 332 ~yD~gMdiwGGENlElSfrvWqCGG~lei~PCSrVGHifRk~~pY~~p~~~-~~~~~N~~RlAeVWmDe----------- 399 (578)
T KOG3736|consen 332 SYDEGMDIWGGENLELSFRVWQCGGRLEIVPCSRVGHIFRKRKPYTFPDGT-DTATRNLKRLAEVWMDE----------- 399 (578)
T ss_pred CccccccccChhhceeeEEEeccCCeEEecCccceeeeeecCCCccCCCcc-hhhhhchhhhhhhhhHH-----------
Confidence 467888889999999999999999999999999999999999999999766 88999999999999999
Q ss_pred CccceeccceeecCCCcCCCCCcCCchhHHHHHHHccCCcchhhcccCCCCCCCCccc-cccceEEeCCCCCcccccCCC
Q psy16411 127 GHVFRDKSPYTYLNPLGAASVDVGDVSERKELRERLQCKSFRWYLENVYPESQMPLDY-YYLGEVKNAETLNCLDTMGRK 205 (214)
Q Consensus 127 ~~~~~~k~~~~~~~p~~~~~~~~gdit~r~~LR~~l~CksF~Wyl~nV~p~~~~p~~~-~~~G~i~n~~s~~CLd~~~~~ 205 (214)
||.+||.+.| .+..+++||+|+|++||++|+||||+|||+|||||+.+|.+. .+.|+|+|..++.|+|.....
T Consensus 400 -----yK~~~y~~~P-~~~~~d~GDvseR~~LR~~L~CKsFkWyL~nVyPel~~~~~~~~~~G~i~~~~~~~cld~~~~~ 473 (578)
T KOG3736|consen 400 -----YKEQFYKRMP-GLRNIDEGDLTERKALRERLNCKSFKWYLENVYPELYLPTPHVYASGEIRNGNPNLCLDTERAP 473 (578)
T ss_pred -----HHHHHHhhCc-cccccCCCCchhHHHHHHhcCCccccchHhhcCccccCCCCcccccceeccCCcchhhhhhchh
Confidence 9999999999 777799999999999999999999999999999999998765 788999998899999998843
Q ss_pred --CCCceeec
Q psy16411 206 --TGEKVVIP 213 (214)
Q Consensus 206 --~g~~~~~~ 213 (214)
.|..++++
T Consensus 474 ~~~~~~~~~~ 483 (578)
T KOG3736|consen 474 AGQGMAVGLY 483 (578)
T ss_pred ccCCCcceEe
Confidence 34667664
No 2
>KOG3738|consensus
Probab=100.00 E-value=3.8e-43 Score=316.47 Aligned_cols=166 Identities=42% Similarity=0.781 Sum_probs=148.5
Q ss_pred CCCCCCCCchhhhhhhhHHHHHHhhhhhhhh------hhhcCCCcccceeecCccEEEeeccceeeeeecCCCCcCCCCc
Q psy16411 24 SPYTFPGGVSKIVLHNAARVAEVWMDEWRDF------YYAMNPGKSASVWMCGGVLEIATCSHVGHVFRKSTPYTFPGGT 97 (214)
Q Consensus 24 ~py~~p~~~~~~~~~N~~R~A~vWmDe~~~~------~y~~n~els~r~w~cGg~~e~~~Cs~v~h~~r~~~P~~~p~~~ 97 (214)
.||..| ++.-.+.-+.+-|+++.+.| +++||+|+|||+|||||++|++|||||||+||+-+||.||++.
T Consensus 286 ~PirtP-----~iAGGlfvidk~wF~~LGkyd~~mdiWGGEn~ElsfrvW~CGGslEIvPCSRVGHVFRkrHpy~FP~gs 360 (559)
T KOG3738|consen 286 APIRTP-----AIAGGLFVIDKEWFNELGKYDMDMDIWGGENLELSFRVWQCGGSLEIVPCSRVGHVFRKRHPYTFPGGS 360 (559)
T ss_pred CcccCc-----cccceeEEecHHHHHHhcccCccccccCCcceEEEEEEEeeCCeeEEEeccchhhhhhccCCCcCCCCC
Confidence 567665 34555566788899886655 7899999999999999999999999999999999999999999
Q ss_pred ccccccccceeheeeecCCeeEEEeCCCCCccceeccceeecCCCcCCCCCcCCchhHHHHHHHccCCcchhhcccCCCC
Q psy16411 98 SNIVNHNNARLAEVWQCGGILEIIPCSHVGHVFRDKSPYTYLNPLGAASVDVGDVSERKELRERLQCKSFRWYLENVYPE 177 (214)
Q Consensus 98 g~~~~~n~~r~aevW~~~~~l~l~pC~~~~~~~~~k~~~~~~~p~~~~~~~~gdit~r~~LR~~l~CksF~Wyl~nV~p~ 177 (214)
|.+..+|..|+||||||+ ||.+||..+| .++.+.+|++.+|++||++++||||+|||+|||||
T Consensus 361 ~~ty~~NTkr~AEvWmDE----------------YK~~yyaarP-sAr~vpfg~i~~rL~~Rk~l~CksFkWYLenVyPe 423 (559)
T KOG3738|consen 361 GNTYIKNTKRAAEVWMDE----------------YKNYYYAARP-SARRVPFGNIYDRLELRKKLRCKSFKWYLENVYPE 423 (559)
T ss_pred CcchhhcchHHHHHHHHH----------------HHHHHHhcCc-hhhcCCCccHHHHHHHHhhcCCcchhhhhhhcCcc
Confidence 999999999999999999 8999999999 89999999999999999999999999999999999
Q ss_pred CCCCccc-cccceEEeCCCCCcccccCCCCCCceeec
Q psy16411 178 SQMPLDY-YYLGEVKNAETLNCLDTMGRKTGEKVVIP 213 (214)
Q Consensus 178 ~~~p~~~-~~~G~i~n~~s~~CLd~~~~~~g~~~~~~ 213 (214)
+.+|.+. .+.|+|++ ...|||++++.+...++|+
T Consensus 424 L~ip~~~~~~~g~lrq--g~~Cl~s~~~~~~~~~gl~ 458 (559)
T KOG3738|consen 424 LRIPFKELIATGTLRQ--GDNCLDSQGQNSQEALGLA 458 (559)
T ss_pred eeccccccccccchhc--cchhhhhhhcccccCccee
Confidence 9999764 56799995 4699999999876666664
No 3
>KOG3736|consensus
Probab=100.00 E-value=7.3e-40 Score=309.68 Aligned_cols=182 Identities=30% Similarity=0.502 Sum_probs=147.9
Q ss_pred CeeecceeEEecccceeeeccCCCCCCCCCCchhhhhhhhHHHHHHhhhhhhhhhhhcCCCcccceeecCc------cEE
Q psy16411 1 VWQCGGILEIIPCSHVGHVFRDKSPYTFPGGVSKIVLHNAARVAEVWMDEWRDFYYAMNPGKSASVWMCGG------VLE 74 (214)
Q Consensus 1 ~W~CGG~~~~~PcsrVgh~~r~~~py~~p~~~~~~~~~N~~R~A~vWmDe~~~~~y~~n~els~r~w~cGg------~~e 74 (214)
||||||+|||+||||||||||++.||++|++. .++.+|++|+|||||||||.+||..+|.+- .-..|| +++
T Consensus 351 vWqCGG~lei~PCSrVGHifRk~~pY~~p~~~-~~~~~N~~RlAeVWmDeyK~~~y~~~P~~~--~~d~GDvseR~~LR~ 427 (578)
T KOG3736|consen 351 VWQCGGRLEIVPCSRVGHIFRKRKPYTFPDGT-DTATRNLKRLAEVWMDEYKEQFYKRMPGLR--NIDEGDLTERKALRE 427 (578)
T ss_pred EeccCCeEEecCccceeeeeecCCCccCCCcc-hhhhhchhhhhhhhhHHHHHHHHhhCcccc--ccCCCCchhHHHHHH
Confidence 79999999999999999999999999999876 689999999999999999999999999854 378898 889
Q ss_pred EeeccceeeeeecCCCCc-----CCCCcccccccc-cceeheeeecC---CeeEEEeCCCCCccceeccceeecCCCcCC
Q psy16411 75 IATCSHVGHVFRKSTPYT-----FPGGTSNIVNHN-NARLAEVWQCG---GILEIIPCSHVGHVFRDKSPYTYLNPLGAA 145 (214)
Q Consensus 75 ~~~Cs~v~h~~r~~~P~~-----~p~~~g~~~~~n-~~r~aevW~~~---~~l~l~pC~~~~~~~~~k~~~~~~~p~~~~ 145 (214)
+++|++|.||+++++|.. .+...|++.|.+ +.|++..-.+. ..++++|||+++++|.+
T Consensus 428 ~L~CKsFkWyL~nVyPel~~~~~~~~~~G~i~~~~~~~cld~~~~~~~~~~~~~~~~Ch~~~~~Q~~------------- 494 (578)
T KOG3736|consen 428 RLNCKSFKWYLENVYPELYLPTPHVYASGEIRNGNPNLCLDTERAPAGQGMAVGLYPCHGPGGNQYF------------- 494 (578)
T ss_pred hcCCccccchHhhcCccccCCCCcccccceeccCCcchhhhhhchhccCCCcceEecCCCccccccc-------------
Confidence 999999999999999952 224678999966 78887776443 48999999999887554
Q ss_pred CCCcCCchhHHHHHHHccCCcchhhcccCCCCCCCCc----c-c---cccceEEeCCCCCcccccCCCCC
Q psy16411 146 SVDVGDVSERKELRERLQCKSFRWYLENVYPESQMPL----D-Y---YYLGEVKNAETLNCLDTMGRKTG 207 (214)
Q Consensus 146 ~~~~gdit~r~~LR~~l~CksF~Wyl~nV~p~~~~p~----~-~---~~~G~i~n~~s~~CLd~~~~~~g 207 (214)
++|++++||-...|.+.. ...+ + ...++ + . ...|+|.|..||+||++....++
T Consensus 495 -----~yT~~~eir~~~~cl~~~-~~~~--v-~l~~C~~~~~q~w~~~~~~~i~~~~sg~CL~~~~~~~~ 555 (578)
T KOG3736|consen 495 -----PYTKQGEIRIGDLCLDVD-DAGK--V-TLYDCHKMGNQLWHYDKDGTLYHRNSGKCLEAAVDKNG 555 (578)
T ss_pred -----cccCCcceEECCEEeccc-cCCc--e-EEEecccccccceEEcCCCceEcCCCCccccccCCCCC
Confidence 788888888877887765 2111 1 11222 1 1 12299999999999999877655
No 4
>KOG3738|consensus
Probab=100.00 E-value=1.4e-38 Score=287.02 Aligned_cols=185 Identities=31% Similarity=0.532 Sum_probs=144.3
Q ss_pred CeeecceeEEecccceeeeccCCCCCCCCCCchhhhhhhhHHHHHHhhhhhhhhhhhcCCCcccceeecCc------cEE
Q psy16411 1 VWQCGGILEIIPCSHVGHVFRDKSPYTFPGGVSKIVLHNAARVAEVWMDEWRDFYYAMNPGKSASVWMCGG------VLE 74 (214)
Q Consensus 1 ~W~CGG~~~~~PcsrVgh~~r~~~py~~p~~~~~~~~~N~~R~A~vWmDe~~~~~y~~n~els~r~w~cGg------~~e 74 (214)
||||||+|||+||||||||||++|||.||+|.+.+..+|++|+|||||||||.+||...|. .|.-.+|. +|.
T Consensus 329 vW~CGGslEIvPCSRVGHVFRkrHpy~FP~gs~~ty~~NTkr~AEvWmDEYK~~yyaarPs--Ar~vpfg~i~~rL~~Rk 406 (559)
T KOG3738|consen 329 VWQCGGSLEIVPCSRVGHVFRKRHPYTFPGGSGNTYIKNTKRAAEVWMDEYKNYYYAARPS--ARRVPFGNIYDRLELRK 406 (559)
T ss_pred EEeeCCeeEEEeccchhhhhhccCCCcCCCCCCcchhhcchHHHHHHHHHHHHHHHhcCch--hhcCCCccHHHHHHHHh
Confidence 6999999999999999999999999999999999999999999999999999999999886 46667887 789
Q ss_pred EeeccceeeeeecCCCC-cCCC----CcccccccccceeheeeecC-CeeEEEeCCCCCccceeccceeecCCCcCCCCC
Q psy16411 75 IATCSHVGHVFRKSTPY-TFPG----GTSNIVNHNNARLAEVWQCG-GILEIIPCSHVGHVFRDKSPYTYLNPLGAASVD 148 (214)
Q Consensus 75 ~~~Cs~v~h~~r~~~P~-~~p~----~~g~~~~~n~~r~aevW~~~-~~l~l~pC~~~~~~~~~k~~~~~~~p~~~~~~~ 148 (214)
.+.|++|.||+++++|. ..|. ..|.++ ..+.|++....+. +.+++++||+.++||.|..
T Consensus 407 ~l~CksFkWYLenVyPeL~ip~~~~~~~g~lr-qg~~Cl~s~~~~~~~~~gl~~C~~s~~nqqwa~-------------- 471 (559)
T KOG3738|consen 407 KLRCKSFKWYLENVYPELRIPFKELIATGTLR-QGDNCLDSQGQNSQEALGLASCHGSGGNQQWAF-------------- 471 (559)
T ss_pred hcCCcchhhhhhhcCcceeccccccccccchh-ccchhhhhhhcccccCcceeecccCCCCcchhh--------------
Confidence 99999999999999995 5552 233333 2356777666664 4799999999999988842
Q ss_pred cCCchhHHHHHHHccCCcchhhcccCCCCCCCCcc--------ccccceEEeCCCCCcccccCCC
Q psy16411 149 VGDVSERKELRERLQCKSFRWYLENVYPESQMPLD--------YYYLGEVKNAETLNCLDTMGRK 205 (214)
Q Consensus 149 ~gdit~r~~LR~~l~CksF~Wyl~nV~p~~~~p~~--------~~~~G~i~n~~s~~CLd~~~~~ 205 (214)
+-|+-..+.++-.|.+|.- ...-.|....|+. ....|.+.|.++++|||+....
T Consensus 472 --~~t~~~~~~~~elCL~v~~-~~pg~~v~l~~C~~~e~~q~~v~~~~~l~h~~s~KOGd~~~~g 533 (559)
T KOG3738|consen 472 --LRTSTQLITHRELCLAVGS-NTPGSPVALVPCGNNETKQRWVELGGHLLHAGSHLCLDNPLKG 533 (559)
T ss_pred --hhhhhhHHHHHhhhheeec-CCCCCeEEEEecCCCCCceEEEecCCchhcccccceeccccCC
Confidence 2255566666677988873 2212222233442 1356889999999999986543
No 5
>KOG3737|consensus
Probab=100.00 E-value=3.6e-34 Score=258.30 Aligned_cols=172 Identities=31% Similarity=0.543 Sum_probs=142.3
Q ss_pred CCCCCCCCchhhhhhhhHHHHHH-hhhhhhhhhhhcCCCcccceeecCccEEEeeccceeeeeecCCCCcCC---C-Ccc
Q psy16411 24 SPYTFPGGVSKIVLHNAARVAEV-WMDEWRDFYYAMNPGKSASVWMCGGVLEIATCSHVGHVFRKSTPYTFP---G-GTS 98 (214)
Q Consensus 24 ~py~~p~~~~~~~~~N~~R~A~v-WmDe~~~~~y~~n~els~r~w~cGg~~e~~~Cs~v~h~~r~~~P~~~p---~-~~g 98 (214)
.||..|.-.+-....|..-.-|. -+|+.-++++++|-|+|||+|+|||.++.+|||+|||++|...||.+- . .-+
T Consensus 326 ePyRSPthAGGLfAInRe~F~ELG~YDpgLqiWGGEnfElSfKIWQCGG~i~fVPCSrVGHvYR~~mpy~fgk~~~k~~~ 405 (603)
T KOG3737|consen 326 EPYRSPTHAGGLFAINREFFFELGLYDPGLQIWGGENFELSFKIWQCGGKILFVPCSRVGHVYRSLMPYQFGKPPIKVGS 405 (603)
T ss_pred CCCCCcccccceeeehHHHHHHhccCCCcceeecCcceeEEEEEEeeCCEEEEEEccccchhhhccccccCCCCccccCC
Confidence 68888854443444454443333 566677778999999999999999999999999999999999999653 2 224
Q ss_pred cccccccceeheeeecCCeeEEEeCCCCCccceeccceeecCCCcCCCCCcCCchhHHHHHHHccCCcchhhcccCCCCC
Q psy16411 99 NIVNHNNARLAEVWQCGGILEIIPCSHVGHVFRDKSPYTYLNPLGAASVDVGDVSERKELRERLQCKSFRWYLENVYPES 178 (214)
Q Consensus 99 ~~~~~n~~r~aevW~~~~~l~l~pC~~~~~~~~~k~~~~~~~p~~~~~~~~gdit~r~~LR~~l~CksF~Wyl~nV~p~~ 178 (214)
..+.-|..|+.++|+|+ ||.+||.+.| .++.+++||||++++||++|+||||+|||++|.-+.
T Consensus 406 p~i~iNy~RVvetW~Dd----------------yk~YfytreP-~a~~l~~GDISeqlalr~~lnCkSFkWfMe~iAYDv 468 (603)
T KOG3737|consen 406 PPILINYVRVVETWWDD----------------YKDYFYTREP-EAQALPYGDISEQLALREDLNCKSFKWFMEEIAYDV 468 (603)
T ss_pred CceEeehhhHHHHHHHh----------------hhhheeecCh-hhccCCcccHHHHHHhHhhcCCchhHHHHHHHHHHH
Confidence 56678999999999999 8999999999 999999999999999999999999999999974332
Q ss_pred -----CCCccccccceEEeCCCCCcccccCCCCCCceeec
Q psy16411 179 -----QMPLDYYYLGEVKNAETLNCLDTMGRKTGEKVVIP 213 (214)
Q Consensus 179 -----~~p~~~~~~G~i~n~~s~~CLd~~~~~~g~~~~~~ 213 (214)
.+|.+ ..+|+||+.+|+.|||+||...+..+++-
T Consensus 469 ~~~yP~lP~N-~~WGE~R~~at~~ClDsMG~~p~g~mglt 507 (603)
T KOG3737|consen 469 TSHYPLLPKN-VDWGEIRGFATAYCLDSMGKTPGGFMGLT 507 (603)
T ss_pred HhcCCCCCCC-CcchhccCcccchhHHhcCCCCCCccccc
Confidence 13433 36899999999999999999998888774
No 6
>KOG3737|consensus
Probab=99.96 E-value=3.4e-31 Score=239.09 Aligned_cols=181 Identities=25% Similarity=0.431 Sum_probs=138.0
Q ss_pred CeeecceeEEecccceeeeccCCCCCCCCCC----chhhhhhhhHHHHHHhhhhhhhhhhhcCCCcccceeecCc-----
Q psy16411 1 VWQCGGILEIIPCSHVGHVFRDKSPYTFPGG----VSKIVLHNAARVAEVWMDEWRDFYYAMNPGKSASVWMCGG----- 71 (214)
Q Consensus 1 ~W~CGG~~~~~PcsrVgh~~r~~~py~~p~~----~~~~~~~N~~R~A~vWmDe~~~~~y~~n~els~r~w~cGg----- 71 (214)
||||||+|++|||||||||||+..||++.+- .+..+..|++|+.|+||||||+|||.++|+. +.-..||
T Consensus 369 IWQCGG~i~fVPCSrVGHvYR~~mpy~fgk~~~k~~~p~i~iNy~RVvetW~Ddyk~YfytreP~a--~~l~~GDISeql 446 (603)
T KOG3737|consen 369 IWQCGGKILFVPCSRVGHVYRSLMPYQFGKPPIKVGSPPILINYVRVVETWWDDYKDYFYTREPEA--QALPYGDISEQL 446 (603)
T ss_pred EEeeCCEEEEEEccccchhhhccccccCCCCccccCCCceEeehhhHHHHHHHhhhhheeecChhh--ccCCcccHHHHH
Confidence 7999999999999999999999999996432 1357889999999999999999999999984 5677898
Q ss_pred -cEEEeeccceeeeeecC-------CCCcC-CCCcccccc-cccceeheeeec-CCeeEEEeCCCCCccceeccceeecC
Q psy16411 72 -VLEIATCSHVGHVFRKS-------TPYTF-PGGTSNIVN-HNNARLAEVWQC-GGILEIIPCSHVGHVFRDKSPYTYLN 140 (214)
Q Consensus 72 -~~e~~~Cs~v~h~~r~~-------~P~~~-p~~~g~~~~-~n~~r~aevW~~-~~~l~l~pC~~~~~~~~~k~~~~~~~ 140 (214)
+++.++|++|.|+++++ ||..- ...+|++.+ ..+.|+|.+--. ++.+++-|||++|+||.+
T Consensus 447 alr~~lnCkSFkWfMe~iAYDv~~~yP~lP~N~~WGE~R~~at~~ClDsMG~~p~g~mglt~CHg~GgNQL~-------- 518 (603)
T KOG3737|consen 447 ALREDLNCKSFKWFMEEIAYDVTSHYPLLPKNVDWGEIRGFATAYCLDSMGKTPGGFMGLTPCHGMGGNQLF-------- 518 (603)
T ss_pred HhHhhcCCchhHHHHHHHHHHHHhcCCCCCCCCcchhccCcccchhHHhcCCCCCCccccccccCCCCceEE--------
Confidence 78999999999999974 44322 257999999 559999998755 579999999999999777
Q ss_pred CCcCCCCCcCCchhHHHHHHHccCCcchhhcc--cCC--C--CCCCCccccccceEEeCCCCCccccc
Q psy16411 141 PLGAASVDVGDVSERKELRERLQCKSFRWYLE--NVY--P--ESQMPLDYYYLGEVKNAETLNCLDTM 202 (214)
Q Consensus 141 p~~~~~~~~gdit~r~~LR~~l~CksF~Wyl~--nV~--p--~~~~p~~~~~~G~i~n~~s~~CLd~~ 202 (214)
.|.+..||-+.-+|..-+---- ++- - ..++..+ ...-+|.|..+++|||..
T Consensus 519 ----------RlN~agQl~qge~CltAdg~~i~~~hC~lgtv~g~WqY~-~~tk~~~H~~~~kC~~~s 575 (603)
T KOG3737|consen 519 ----------RLNEAGQLMQGEQCLTADGSKIMITHCNLGTVKGEWQYF-KNTKRFTHIPSGKCLDRS 575 (603)
T ss_pred ----------EeccccchhccceeeecCCceEEEEEeecccccCceehh-hcchheeecccccccccc
Confidence 4555667777777877442100 000 0 0011111 123468888899999964
No 7
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=99.62 E-value=7.3e-16 Score=135.10 Aligned_cols=92 Identities=65% Similarity=1.339 Sum_probs=81.3
Q ss_pred CeeecceeEEecccceeeecc-CCCCCCCCCCchhhhhhhhHHHHHHhhhhhhhhhhhcCCCcccceeecCccEEEeecc
Q psy16411 1 VWQCGGILEIIPCSHVGHVFR-DKSPYTFPGGVSKIVLHNAARVAEVWMDEWRDFYYAMNPGKSASVWMCGGVLEIATCS 79 (214)
Q Consensus 1 ~W~CGG~~~~~PcsrVgh~~r-~~~py~~p~~~~~~~~~N~~R~A~vWmDe~~~~~y~~n~els~r~w~cGg~~e~~~Cs 79 (214)
+|+||+++..+|+|+|.|+++ ...||..+.+.. .+.+|..|+++.|||+++.++|..++++.
T Consensus 207 ~~~~G~~i~~~p~a~v~H~~~~~~~~~~~~~~~~-~~~~n~~r~~~~w~~~~~~~~~~~~~~~~---------------- 269 (299)
T cd02510 207 VWQCGGSIEIVPCSRVGHIFRRKRKPYTFPGGSG-TVLRNYKRVAEVWMDEYKEYFYKARPELR---------------- 269 (299)
T ss_pred HHHcCCeEEEeeccEEEEeccccCCCCCCCCccc-HHHHHHHHHHHHHHHHHHHHHHhcCcccc----------------
Confidence 589999999999999999999 889999876543 67899999999999999999988877641
Q ss_pred ceeeeeecCCCCcCCCCcccccccccceeheeeecCCeeEEEeCCCCCccceeccceeecCCCcCCCCCcCCchhHHHHH
Q psy16411 80 HVGHVFRKSTPYTFPGGTSNIVNHNNARLAEVWQCGGILEIIPCSHVGHVFRDKSPYTYLNPLGAASVDVGDVSERKELR 159 (214)
Q Consensus 80 ~v~h~~r~~~P~~~p~~~g~~~~~n~~r~aevW~~~~~l~l~pC~~~~~~~~~k~~~~~~~p~~~~~~~~gdit~r~~LR 159 (214)
.+..+|+++|++++
T Consensus 270 ------------------------------------------------------------------~~~~~~~~~~~~~~ 283 (299)
T cd02510 270 ------------------------------------------------------------------NIDYGDLSERKALR 283 (299)
T ss_pred ------------------------------------------------------------------cCCCCCHHHHHHHH
Confidence 14778999999999
Q ss_pred HHccCCcchhhcccCC
Q psy16411 160 ERLQCKSFRWYLENVY 175 (214)
Q Consensus 160 ~~l~CksF~Wyl~nV~ 175 (214)
++|.||+|+||+++|+
T Consensus 284 ~~~~~~~~~w~~~~~~ 299 (299)
T cd02510 284 ERLKCKSFKWYLENVY 299 (299)
T ss_pred HHcCCCCchHHHhhcC
Confidence 9999999999999874
No 8
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=97.34 E-value=1.8e-05 Score=69.33 Aligned_cols=67 Identities=51% Similarity=0.893 Sum_probs=56.4
Q ss_pred hhhhhhhhhhcCCCcccceeecCccEEEeeccceeeeee-cCCCCcCCCCcccccccccceeheeeecC
Q psy16411 48 MDEWRDFYYAMNPGKSASVWMCGGVLEIATCSHVGHVFR-KSTPYTFPGGTSNIVNHNNARLAEVWQCG 115 (214)
Q Consensus 48 mDe~~~~~y~~n~els~r~w~cGg~~e~~~Cs~v~h~~r-~~~P~~~p~~~g~~~~~n~~r~aevW~~~ 115 (214)
+||....++.|+.++++|.|++|+.+..+|++.|.|..+ ...||..+.... .+.+|..|.++.|+++
T Consensus 189 fDe~~~~~~~ED~Dl~~R~~~~G~~i~~~p~a~v~H~~~~~~~~~~~~~~~~-~~~~n~~r~~~~w~~~ 256 (299)
T cd02510 189 YDEGMDIWGGENLELSFKVWQCGGSIEIVPCSRVGHIFRRKRKPYTFPGGSG-TVLRNYKRVAEVWMDE 256 (299)
T ss_pred CCCcccccCchhHHHHHHHHHcCCeEEEeeccEEEEeccccCCCCCCCCccc-HHHHHHHHHHHHHHHH
Confidence 555554556689999999999999999999999999999 788887775433 4568999999999998
No 9
>PF00652 Ricin_B_lectin: Ricin-type beta-trefoil lectin domain; InterPro: IPR000772 Ricin is a legume lectin from the seeds of the castor bean plant, Ricinus communis. The seeds are poisonous to people, animals and insects and just one milligram of ricin can kill an adult. Primary structure analysis has shown the presence of a similar domain in many carbohydrate-recognition proteins like plant and bacterial AB-toxins, glycosidases or proteases [, , ]. This domain, known as the ricin B lectin domain, can be present in one or more copies and has been shown in some instance to bind simple sugars, such as galactose or lactose. The ricin B lectin domain is composed of three homologous subdomains of 40 amino acids (alpha, beta and gamma) and a linker peptide of around 15 residues (lambda). It has been proposed that the ricin B lectin domain arose by gene triplication from a primitive 40 residue galactoside-binding peptide [, ]. The most characteristic, though not completely conserved, sequence feature is the presence of a Q-W pattern. Consequently, the ricin B lectin domain as also been refered as the (QxW)3 domain and the three homologous regions as the QxW repeats [, ]. A disulphide bond is also conserved in some of the QxW repeats []. The 3D structure of the ricin B chain has shown that the three QxW repeats pack around a pseudo threefold axis that is stabilised by the lambda linker []. The ricin B lectin domain has no major segments of a helix or beta sheet but each of the QxW repeats contains an omega loop []. An idealized omega-loop is a compact, contiguous segment of polypeptide that traces a 'loop-shaped' path in three-dimensional space; the main chain resembles a Greek omega.; PDB: 2VLC_B 3A22_B 3A21_B 3A23_B 1GGP_B 1VCL_A 2Z48_B 2Z49_A 2D7R_A 2D7I_A ....
Probab=92.38 E-value=0.021 Score=42.49 Aligned_cols=26 Identities=31% Similarity=0.598 Sum_probs=21.2
Q ss_pred cceEEeCCCCCcccccCCCCCCceee
Q psy16411 187 LGEVKNAETLNCLDTMGRKTGEKVVI 212 (214)
Q Consensus 187 ~G~i~n~~s~~CLd~~~~~~g~~~~~ 212 (214)
.+.|+|..+++|||..+..++.+|.+
T Consensus 88 ~~~i~n~~s~~cL~~~~~~~~~~l~~ 113 (124)
T PF00652_consen 88 DGRIRNKNSGLCLDVKGGSDGNPLVL 113 (124)
T ss_dssp TSBEEETTTTEEEEEGGGSTTEBEEE
T ss_pred CeeEEeCCCCEEEEecCCCCCCEEEE
Confidence 48999999999999987666666665
No 10
>smart00458 RICIN Ricin-type beta-trefoil. Carbohydrate-binding domain formed from presumed gene triplication.
Probab=84.34 E-value=0.82 Score=33.48 Aligned_cols=26 Identities=35% Similarity=0.634 Sum_probs=19.2
Q ss_pred cceEEeCCCCCcccccCCCCCCceee
Q psy16411 187 LGEVKNAETLNCLDTMGRKTGEKVVI 212 (214)
Q Consensus 187 ~G~i~n~~s~~CLd~~~~~~g~~~~~ 212 (214)
.|.|+|..+++|||..+.+...++.+
T Consensus 78 ~~~i~~~~~~~cl~~~~~~~~~~~~~ 103 (117)
T smart00458 78 DGTIRNPDSGLCLDVKDGNTGTKVIL 103 (117)
T ss_pred CeeEEeCCCCEEEecCCCCCCceEEE
Confidence 48999999999999876654334443
No 11
>cd00161 RICIN Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.
Probab=82.55 E-value=1 Score=32.61 Aligned_cols=25 Identities=28% Similarity=0.729 Sum_probs=18.8
Q ss_pred ceEEeCCCCCcccccCCC-CCCceee
Q psy16411 188 GEVKNAETLNCLDTMGRK-TGEKVVI 212 (214)
Q Consensus 188 G~i~n~~s~~CLd~~~~~-~g~~~~~ 212 (214)
|.|++..+++|||..+.+ .+..|.+
T Consensus 86 ~~i~~~~~~~cl~~~~~~~~~~~v~~ 111 (124)
T cd00161 86 GTIRNLKSGKCLDVKGGNTNGTNLIL 111 (124)
T ss_pred cEEEECCCCeEEeCCCCCCCCCEEEE
Confidence 899999999999987654 3445544
No 12
>cd00161 RICIN Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.
Probab=50.48 E-value=15 Score=26.33 Aligned_cols=25 Identities=32% Similarity=0.557 Sum_probs=17.3
Q ss_pred ceEEeCCCCCcccccCCCCCCceee
Q psy16411 188 GEVKNAETLNCLDTMGRKTGEKVVI 212 (214)
Q Consensus 188 G~i~n~~s~~CLd~~~~~~g~~~~~ 212 (214)
|.|+...+++|||..+..++..+.+
T Consensus 44 g~~~~~~~~~Cl~~~~~~~~~~~~~ 68 (124)
T cd00161 44 GTIRIKSSNLCLDVGGDAPGSKVRL 68 (124)
T ss_pred CeEEEcCCCeEEcccCCCCCCEEEE
Confidence 5677666788999876655555554
No 13
>PF02709 Glyco_transf_7C: N-terminal domain of galactosyltransferase; InterPro: IPR003859 This is a family of galactosyltransferases from a wide range of metazoa with three related galactosyltransferase activities; all three of which are possessed by one sequence in some cases. The three functions are N-acetyllactosamine synthase (2.4.1.90 from EC); beta-N-acetylglucosaminyl-glycopeptide beta-1,4-galactosyltransferase (2.4.1.38 from EC); and lactose synthase (2.4.1.22 from EC). Note that N-acetyllactosamine synthase is a component of lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin N-acetyllactosamine synthase is used.; GO: 0016757 transferase activity, transferring glycosyl groups, 0005975 carbohydrate metabolic process; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=34.05 E-value=3.4 Score=29.59 Aligned_cols=40 Identities=15% Similarity=0.073 Sum_probs=29.5
Q ss_pred hhhhhhhhhhhcCCCcccceeecCccEEEeecccee-eeee
Q psy16411 47 WMDEWRDFYYAMNPGKSASVWMCGGVLEIATCSHVG-HVFR 86 (214)
Q Consensus 47 WmDe~~~~~y~~n~els~r~w~cGg~~e~~~Cs~v~-h~~r 86 (214)
.+||...-++.|..|++.|.+.+|..+++++.+.+. |+++
T Consensus 36 Gfde~f~gWG~ED~Dl~~Rl~~~g~~~~~~~~~~~~yh~~~ 76 (78)
T PF02709_consen 36 GFDERFWGWGGEDDDLYNRLWKAGLKIVRVPGSIGRYHLWK 76 (78)
T ss_dssp SS-SS-TSCSSHHHHHHHHHHHTT---B-SSTTTTEEEEEE
T ss_pred CCCccccccCccHHHHHHHHHHcCCeEEecCCceEEEEEee
Confidence 688877778889999999999999999999999986 7763
No 14
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=27.28 E-value=42 Score=24.39 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=18.8
Q ss_pred ceEEeCCCCCcccccCCC--CCCceee
Q psy16411 188 GEVKNAETLNCLDTMGRK--TGEKVVI 212 (214)
Q Consensus 188 G~i~n~~s~~CLd~~~~~--~g~~~~~ 212 (214)
-.|+|..+++|||..+.+ +|..|.+
T Consensus 17 Y~i~n~~sg~~L~v~~~~~~~g~~v~~ 43 (105)
T PF14200_consen 17 YKIRNVNSGKYLDVAGGSTANGTNVQQ 43 (105)
T ss_dssp EEEEETTTTEEEEEGCTTCSTTEBEEE
T ss_pred EEEEECCCCCEEEeCCCCcCCCcEEEE
Confidence 479999999999998754 4555543
No 15
>KOG4405|consensus
Probab=23.82 E-value=29 Score=33.12 Aligned_cols=18 Identities=56% Similarity=0.964 Sum_probs=15.2
Q ss_pred ceeEEecccceeeeccCCC
Q psy16411 6 GILEIIPCSHVGHVFRDKS 24 (214)
Q Consensus 6 G~~~~~PcsrVgh~~r~~~ 24 (214)
|+++.||||| +-||.+++
T Consensus 172 g~l~~VPcSR-advFnsk~ 189 (547)
T KOG4405|consen 172 GELEQVPCSR-ADVFNSKS 189 (547)
T ss_pred CeeeecCchH-Hhhhcccc
Confidence 7999999999 56888773
No 16
>PF03002 Somatostatin: Somatostatin/Cortistatin family; InterPro: IPR018142 Somatostatin inhibits the release of the pituitary growth hormone, somatotropin and inhibits the release of glucagon and insulin from the pancreas of fasted animals. Cortistatin is a cortical neuropeptide with neuronal depressant and sleep-modulating properties [].; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=23.63 E-value=21 Score=18.74 Aligned_cols=9 Identities=44% Similarity=1.261 Sum_probs=7.4
Q ss_pred HccCCcchh
Q psy16411 161 RLQCKSFRW 169 (214)
Q Consensus 161 ~l~CksF~W 169 (214)
+-.||.|-|
T Consensus 4 k~~CknffW 12 (18)
T PF03002_consen 4 KAGCKNFFW 12 (18)
T ss_pred cccccceee
Confidence 457999998
Done!