RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy16411
         (214 letters)



>gnl|CDD|133004 cd02510, pp-GalNAc-T, pp-GalNAc-T initiates the formation of
           mucin-type O-linked glycans.  UDP-GalNAc: polypeptide
           alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T)
           initiate the formation of mucin-type, O-linked glycans
           by catalyzing the transfer of
           alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to
           hydroxyl groups of Ser or Thr residues of core proteins
           to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These
           enzymes are type II membrane proteins with a GT-A type
           catalytic domain and a lectin domain located on the
           lumen side of the Golgi apparatus. In human, there are
           15 isozymes of pp-GalNAc-Ts, representing the largest of
           all glycosyltransferase families. Each isozyme has
           unique but partially redundant substrate specificity for
           glycosylation sites on acceptor proteins.
          Length = 299

 Score =  121 bits (306), Expect = 1e-33
 Identities = 54/111 (48%), Positives = 64/111 (57%), Gaps = 19/111 (17%)

Query: 66  VWMCGGVLEIATCSHVGHVFRKS-TPYTFPGGTSNIVNHNNARLAEVWQCGGILEIIPCS 124
           VW CGG +EI  CS VGH+FR+   PYTFPGG S  V  N  R+AEVW            
Sbjct: 207 VWQCGGSIEIVPCSRVGHIFRRKRKPYTFPGG-SGTVLRNYKRVAEVW------------ 253

Query: 125 HVGHVFRDKSPYTYLNPLGAASVDVGDVSERKELRERLQCKSFRWYLENVY 175
                  +   Y Y       ++D GD+SERK LRERL+CKSF+WYLENVY
Sbjct: 254 -----MDEYKEYFYKARPELRNIDYGDLSERKALRERLKCKSFKWYLENVY 299



 Score =  101 bits (255), Expect = 4e-26
 Identities = 38/61 (62%), Positives = 46/61 (75%), Gaps = 2/61 (3%)

Query: 1   VWQCGGILEIIPCSHVGHVFRDK-SPYTFPGGVSKIVLHNAARVAEVWMDEWRDFYYAMN 59
           VWQCGG +EI+PCS VGH+FR K  PYTFPGG    VL N  RVAEVWMDE+++++Y   
Sbjct: 207 VWQCGGSIEIVPCSRVGHIFRRKRKPYTFPGGSG-TVLRNYKRVAEVWMDEYKEYFYKAR 265

Query: 60  P 60
           P
Sbjct: 266 P 266


>gnl|CDD|236901 PRK11360, PRK11360, sensory histidine kinase AtoS; Provisional.
          Length = 607

 Score = 29.2 bits (66), Expect = 1.7
 Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 1/24 (4%)

Query: 140 NPLGAASVDVGDVSERKELRERLQ 163
             +GA  V   D++ERK L+ R+ 
Sbjct: 360 EMIGAL-VIFSDLTERKRLQRRVA 382


>gnl|CDD|113530 pfam04763, DUF562, Protein of unknown function (DUF562).  Family of
           uncharacterized proteins.
          Length = 146

 Score = 27.4 bits (61), Expect = 3.4
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 134 SPYTYLNPLGAASVDVGDVSERKELRERLQCKSF 167
           S Y+YLN   + S +   V ER+ L +  + +SF
Sbjct: 47  SGYSYLNIF-SCSSESMCVKERQILNDDSEGRSF 79


>gnl|CDD|215419 PLN02784, PLN02784, alpha-amylase.
          Length = 894

 Score = 28.4 bits (63), Expect = 3.7
 Identities = 14/47 (29%), Positives = 16/47 (34%), Gaps = 23/47 (48%)

Query: 164 CKSFRWYLE-----------------------NVYPESQMPLDYYYL 187
            KS RWY+E                       +V PE  MP D Y L
Sbjct: 514 HKSGRWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNL 560


>gnl|CDD|219324 pfam07183, DUF1403, Protein of unknown function (DUF1403).  This
          family consists of several hypothetical bacterial
          proteins of around 320 residues in length. Members of
          this family are mainly found in Rhizobium and
          Agrobacterium species. The function of this family is
          unknown.
          Length = 308

 Score = 27.7 bits (62), Expect = 5.0
 Identities = 8/26 (30%), Positives = 11/26 (42%)

Query: 28 FPGGVSKIVLHNAARVAEVWMDEWRD 53
          F  G +   L +  R   VW+  WR 
Sbjct: 35 FAAGAALGSLDDLVRRQPVWLGLWRQ 60


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.321    0.138    0.457 

Gapped
Lambda     K      H
   0.267   0.0695    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,972,629
Number of extensions: 986348
Number of successful extensions: 804
Number of sequences better than 10.0: 1
Number of HSP's gapped: 797
Number of HSP's successfully gapped: 8
Length of query: 214
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 121
Effective length of database: 6,812,680
Effective search space: 824334280
Effective search space used: 824334280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.8 bits)