RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16411
(214 letters)
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1;
glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus
musculus} SCOP: b.42.2.1 c.68.1.17
Length = 472
Score = 129 bits (324), Expect = 2e-35
Identities = 87/197 (44%), Positives = 106/197 (53%), Gaps = 22/197 (11%)
Query: 21 RDKSPYTFPGGVSKIVLHNAARVAEVW-----MDEWRDFYYAMNPGKSASVWMCGGVLEI 75
R K T P + + + + D D + N S +W CGG LEI
Sbjct: 190 RRKGDRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEI 249
Query: 76 ATCSHVGHVFRKSTPYTFPGGTSNIVNHNNARLAEVWQCGGILEIIPCSHVGHVFRDKSP 135
TCSHVGHVFRK+TPYTFPGGT I+N NN RLAEVW +
Sbjct: 250 VTCSHVGHVFRKATPYTFPGGTGQIINKNNRRLAEVW-----------------MDEFKN 292
Query: 136 YTYLNPLGAASVDVGDVSERKELRERLQCKSFRWYLENVYPESQMPLDYYYLGEVKNAET 195
+ Y+ G VD GD+S R LR +LQCK F WYLEN+YP+SQ+P Y+ LGE++N ET
Sbjct: 293 FFYIISPGVTKVDYGDISSRLGLRRKLQCKPFSWYLENIYPDSQIPRHYFSLGEIRNVET 352
Query: 196 LNCLDTMGRKTGEKVVI 212
CLD M RK EKV I
Sbjct: 353 NQCLDNMARKENEKVGI 369
Score = 69.0 bits (168), Expect = 6e-14
Identities = 38/61 (62%), Positives = 50/61 (81%)
Query: 1 VWQCGGILEIIPCSHVGHVFRDKSPYTFPGGVSKIVLHNAARVAEVWMDEWRDFYYAMNP 60
+WQCGG LEI+ CSHVGHVFR +PYTFPGG +I+ N R+AEVWMDE+++F+Y ++P
Sbjct: 240 IWQCGGTLEIVTCSHVGHVFRKATPYTFPGGTGQIINKNNRRLAEVWMDEFKNFFYIISP 299
Query: 61 G 61
G
Sbjct: 300 G 300
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2,
protein-UDP; ppgalnact, mucin, glycosyltransferase; HET:
UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Length = 501
Score = 127 bits (319), Expect = 2e-34
Identities = 64/167 (38%), Positives = 81/167 (48%), Gaps = 20/167 (11%)
Query: 47 WMDEWRDFYYAMNPGKSASVWMCGGVLEIATCSHVGHVFRKSTPYTFPGGTSNIVNHNNA 106
D D + N S VW CGG LEI CS VGHVFRK PYTFPGG+ + N
Sbjct: 253 KYDMMMDVWGGENLEISFRVWQCGGSLEIIPCSRVGHVFRKQHPYTFPGGSGTVFARNTR 312
Query: 107 RLAEVWQCGGILEIIPCSHVGHVFRDKSPYTYLNPLGAASVDVGDVSERKELRERLQCKS 166
R AEVW + + Y A +V G++ R ELR++L CK
Sbjct: 313 RAAEVW-----------------MDEYKNFYYAAVPSARNVPYGNIQSRLELRKKLSCKP 355
Query: 167 FRWYLENVYPESQMPLD-YYYLGEVKNAETLNCLDTMGRKTGEKVVI 212
F+WYLENVYPE ++P G ++ NCLDT+G V +
Sbjct: 356 FKWYLENVYPELRVPDHQDIAFGALQQGT--NCLDTLGHFADGVVGV 400
Score = 67.5 bits (164), Expect = 2e-13
Identities = 40/60 (66%), Positives = 45/60 (75%)
Query: 1 VWQCGGILEIIPCSHVGHVFRDKSPYTFPGGVSKIVLHNAARVAEVWMDEWRDFYYAMNP 60
VWQCGG LEIIPCS VGHVFR + PYTFPGG + N R AEVWMDE+++FYYA P
Sbjct: 272 VWQCGGSLEIIPCSRVGHVFRKQHPYTFPGGSGTVFARNTRRAAEVWMDEYKNFYYAAVP 331
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil,
rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens}
PDB: 2d7r_A*
Length = 570
Score = 114 bits (285), Expect = 1e-29
Identities = 49/171 (28%), Positives = 71/171 (41%), Gaps = 24/171 (14%)
Query: 47 WMDEWRDFYYAMNPGKSASVWMCGGVLEIATCSHVGHVFRKSTPYTFPGGTSNIVNHNNA 106
D + + S VWMCGG +E CS VGH++RK PY P G S + N
Sbjct: 301 GYDPGLEIWGGEQYEISFKVWMCGGRMEDIPCSRVGHIYRKYVPYKVPAGVS--LARNLK 358
Query: 107 RLAEVWQCGGILEIIPCSHVGHVFRDKSPYTYLNPLGAASVDVGDVSERKELRERLQCKS 166
R+AEVW + + Y Y + GDV+ +K+LR L CKS
Sbjct: 359 RVAEVW-----------------MDEYAEYIYQRRPEYRHLSAGDVAVQKKLRSSLNCKS 401
Query: 167 FRWYLENVYPESQMP-----LDYYYLGEVKNAETLNCLDTMGRKTGEKVVI 212
F+W++ + + GE++N T C DT G + +
Sbjct: 402 FKWFMTKIAWDLPKFYPPVEPPAAAWGEIRNVGTGLCADTKHGALGSPLRL 452
Score = 69.9 bits (170), Expect = 3e-14
Identities = 32/61 (52%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query: 1 VWQCGGILEIIPCSHVGHVFRDKSPYTFPGGVSKIVLHNAARVAEVWMDEWRDFYYAMNP 60
VW CGG +E IPCS VGH++R PY P GVS + N RVAEVWMDE+ ++ Y P
Sbjct: 320 VWMCGGRMEDIPCSRVGHIYRKYVPYKVPAGVS--LARNLKRVAEVWMDEYAEYIYQRRP 377
Query: 61 G 61
Sbjct: 378 E 378
>3i4z_A Tryptophan dimethylallyltransferase; prenyl transferase, PT barrel,
alkaloid metabolism; 1.76A {Aspergillus fumigatus} PDB:
3i4x_A
Length = 465
Score = 30.5 bits (68), Expect = 0.38
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 124 SHVGHVFRDKSPY--TYLNPLGAASVDVGDVSERKELRERLQCK 165
+++ +RD++PY YL V ++SE K + C+
Sbjct: 403 AYISFSYRDRTPYLSVYLQSFETGDWAVANLSESKVKCQDAACQ 446
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.61
Identities = 33/139 (23%), Positives = 51/139 (36%), Gaps = 37/139 (26%)
Query: 34 KIVLH--NAARVAEVWMDEWRDFYYAM---NPGKSASVWMCGGVLEIATCSHVGHVFRKS 88
++V + +VA V DE Y M NPG+ A+ L+ VG K
Sbjct: 1784 EVVFYRGMTMQVA-VPRDELGRSNYGMIAINPGRVAAS-FSQEALQ-YVVERVG----KR 1836
Query: 89 TPYTFPGGTSNIVNHNNARLAEVWQ--CGGILEIIPCSHVGHVFRDKSPYTYLNPLGAAS 146
T G IVN+N E Q G L + V +V LN +
Sbjct: 1837 T-----GWLVEIVNYN----VENQQYVAAGDLRALDT--VTNV---------LNFIKLQK 1876
Query: 147 VDVGDVSER---KELRERL 162
+D+ ++ + +E+ L
Sbjct: 1877 IDIIELQKSLSLEEVEGHL 1895
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD,
DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Length = 440
Score = 29.8 bits (68), Expect = 0.64
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 24 SPY-TFPGGVSKIVLHNAARVAEVWMDE--WRDFYY 56
SP+ F G +S + + E ++ E WRDF+
Sbjct: 217 SPHLKF-GTISMREAYYTQKGKEEFVRELYWRDFFT 251
>1vcl_A Hemolytic lectin CEL-III; hemolysis, hemagglutination,
pore-forming, calcium, toxin; HET: BTB; 1.70A {Cucumaria
echinata} SCOP: b.42.2.1 b.42.2.1 d.281.1.1 PDB: 2z48_A*
2z49_A*
Length = 432
Score = 29.7 bits (66), Expect = 0.73
Identities = 5/30 (16%), Positives = 16/30 (53%)
Query: 183 DYYYLGEVKNAETLNCLDTMGRKTGEKVVI 212
+ +GE+++ ++ C+D +G + +
Sbjct: 6 NPLDIGELRSFKSKQCVDIVGNQGSGNIAT 35
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy
transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA
FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1
c.28.1.1
Length = 471
Score = 27.5 bits (62), Expect = 3.1
Identities = 7/15 (46%), Positives = 10/15 (66%), Gaps = 2/15 (13%)
Query: 44 AEVWMDE--WRDFYY 56
VW++E WR+FY
Sbjct: 268 GSVWLNELIWREFYR 282
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin
enzyme, photoreactivating enzyme; HET: FAD; 1.80A
{Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB:
1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Length = 484
Score = 27.5 bits (62), Expect = 3.3
Identities = 7/15 (46%), Positives = 8/15 (53%), Gaps = 2/15 (13%)
Query: 44 AEVWMDE--WRDFYY 56
VW E WR+FY
Sbjct: 277 IRVWQQELAWREFYQ 291
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein,
nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A
{Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB:
1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Length = 420
Score = 27.4 bits (62), Expect = 3.6
Identities = 8/23 (34%), Positives = 9/23 (39%), Gaps = 2/23 (8%)
Query: 36 VLHNAARVAEVWMDE--WRDFYY 56
A W+ E WRDF Y
Sbjct: 230 AERRGGEGARKWVAELLWRDFSY 252
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein;
HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP:
a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Length = 509
Score = 26.8 bits (60), Expect = 5.5
Identities = 1/15 (6%), Positives = 6/15 (40%), Gaps = 2/15 (13%)
Query: 44 AEVWMDE--WRDFYY 56
+++ R++
Sbjct: 287 VNLFLKSIGLREYSR 301
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A
{Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A*
1s67_L* 1s66_L*
Length = 167
Score = 26.1 bits (58), Expect = 6.1
Identities = 3/13 (23%), Positives = 6/13 (46%)
Query: 151 DVSERKELRERLQ 163
D S +E+ +
Sbjct: 152 DASVEMAQKEQTR 164
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase,
phosphoprotein, nitrogen FIX PER-ARNT-SIM,
metal-binding, PAS, iron, heme; HET: HEM; 1.5A
{Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A*
2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A*
1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A*
2owj_A*
Length = 119
Score = 25.9 bits (58), Expect = 6.6
Identities = 5/13 (38%), Positives = 10/13 (76%)
Query: 151 DVSERKELRERLQ 163
D++E ++ + RLQ
Sbjct: 105 DLTEHQQTQARLQ 117
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.457
Gapped
Lambda K H
0.267 0.0680 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,525,680
Number of extensions: 201040
Number of successful extensions: 461
Number of sequences better than 10.0: 1
Number of HSP's gapped: 451
Number of HSP's successfully gapped: 31
Length of query: 214
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 124
Effective length of database: 4,188,903
Effective search space: 519423972
Effective search space used: 519423972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.1 bits)