RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16411
(214 letters)
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide
N-acetylgalactosaminyltransferase 1, N-terminal domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 328
Score = 115 bits (289), Expect = 1e-31
Identities = 68/166 (40%), Positives = 84/166 (50%), Gaps = 22/166 (13%)
Query: 18 HVFRDKSPYTFPGGVSKIVLHNAARVAEVW-----MDEWRDFYYAMNPGKSASVWMCGGV 72
+ R K T P + + + + D D + N S +W CGG
Sbjct: 180 EMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGT 239
Query: 73 LEIATCSHVGHVFRKSTPYTFPGGTSNIVNHNNARLAEVWQCGGILEIIPCSHVGHVFRD 132
LEI TCSHVGHVFRK+TPYTFPGGT I+N NN RLAEVW +
Sbjct: 240 LEIVTCSHVGHVFRKATPYTFPGGTGQIINKNNRRLAEVW-----------------MDE 282
Query: 133 KSPYTYLNPLGAASVDVGDVSERKELRERLQCKSFRWYLENVYPES 178
+ Y+ G VD GD+S R LR +LQCK F WYLEN+YP+S
Sbjct: 283 FKNFFYIISPGVTKVDYGDISSRLGLRRKLQCKPFSWYLENIYPDS 328
Score = 77.7 bits (190), Expect = 1e-17
Identities = 38/60 (63%), Positives = 49/60 (81%)
Query: 2 WQCGGILEIIPCSHVGHVFRDKSPYTFPGGVSKIVLHNAARVAEVWMDEWRDFYYAMNPG 61
WQCGG LEI+ CSHVGHVFR +PYTFPGG +I+ N R+AEVWMDE+++F+Y ++PG
Sbjct: 234 WQCGGTLEIVTCSHVGHVFRKATPYTFPGGTGQIINKNNRRLAEVWMDEFKNFFYIISPG 293
>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS
{Rhodothermus marinus [TaxId: 29549]}
Length = 381
Score = 53.0 bits (127), Expect = 5e-09
Identities = 10/175 (5%), Positives = 28/175 (16%), Gaps = 56/175 (32%)
Query: 11 IPCSHVGHVFRDKSPYTFPGGVSKIVLHNAARVAEVWMDEWRDFYYAMNPGKSASVWMCG 70
IP ++ M A++
Sbjct: 210 IPEGKAHRLYGGLDDLRT-----------------------------MLVECFAAIQSLQ 240
Query: 71 GVLEIATCSHVGHVFRKSTPYTFPGGTSNIVNHNNARLAEVWQCGGILEIIPCSHVGHVF 130
+ H P+ P + V ++ +
Sbjct: 241 HEVVGQPAIHRQ-----EHPHRVPVHIAERVGYDVEATLHRLMQH--------------W 281
Query: 131 RDKSPYTYLNPLGAASVDVGDVSERKELRERLQCKSFRWYLENVYPESQMPLDYY 185
+ L + + + + L+++
Sbjct: 282 TPRQVE-LLELFTTP--VREGLRTCQRRPA-FNFMDEMAWAATYHVL----LEHF 328
Score = 40.7 bits (95), Expect = 5e-05
Identities = 7/54 (12%), Positives = 16/54 (29%), Gaps = 5/54 (9%)
Query: 1 VWQCGGILEIIPCSHVGHVFRDKSPYTFPGGVSKIVLHNAARVAEVWMDEWRDF 54
+ + P H + P+ P +++ V ++ M W
Sbjct: 236 IQSLQHEVVGQPAIHRQ-----EHPHRVPVHIAERVGYDVEATLHRLMQHWTPR 284
>d1xhba1 b.42.2.1 (A:423-553) Polypeptide
N-acetylgalactosaminyltransferase 1, C-terminal domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 131
Score = 47.2 bits (111), Expect = 1e-07
Identities = 19/34 (55%), Positives = 23/34 (67%)
Query: 179 QMPLDYYYLGEVKNAETLNCLDTMGRKTGEKVVI 212
Q+P Y+ LGE++N ET CLD M RK EKV I
Sbjct: 1 QIPRHYFSLGEIRNVETNQCLDNMARKENEKVGI 34
>d1vcla1 b.42.2.1 (A:1-150) Hemolytic lectin CEL-III, domains 1 and
2 {Cucumaria echinata [TaxId: 40245]}
Length = 150
Score = 31.0 bits (69), Expect = 0.052
Identities = 8/32 (25%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 181 PLDYYYLGEVKNAETLNCLDTMGRKTGEKVVI 212
PLD GE+++ ++ C+D +G + +
Sbjct: 7 PLDI---GELRSFKSKQCVDIVGNQGSGNIAT 35
Score = 24.9 bits (53), Expect = 5.9
Identities = 9/47 (19%), Positives = 14/47 (29%)
Query: 166 SFRWYLENVYPESQMPLDYYYLGEVKNAETLNCLDTMGRKTGEKVVI 212
S RW + E+ N + CLD G + +
Sbjct: 87 SQRWRQGRRKTFTDNGGIEQVATEIINLASGKCLDIEGSDGTGDIGV 133
>d1vcla2 b.42.2.1 (A:151-283) Hemolytic lectin CEL-III, domains 1
and 2 {Cucumaria echinata [TaxId: 40245]}
Length = 133
Score = 28.8 bits (63), Expect = 0.26
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 185 YYLGEVKNAETLNCLDTMGRKTGEKVVI 212
+ G ++N ++ CLD G V++
Sbjct: 3 LFYGRLRNEKSDLCLDVEGSDGKGNVLM 30
>d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 161
Score = 27.0 bits (59), Expect = 1.1
Identities = 6/78 (7%), Positives = 25/78 (32%)
Query: 60 PGKSASVWMCGGVLEIATCSHVGHVFRKSTPYTFPGGTSNIVNHNNARLAEVWQCGGILE 119
PG + + ++ T + + ++ G + ++ + ++A+ +
Sbjct: 5 PGYGVVIDVGSRTTDVLTINLMDMEPVVELSFSLQIGVGDAISALSRKIAKETGFVVPFD 64
Query: 120 IIPCSHVGHVFRDKSPYT 137
+ + V +
Sbjct: 65 LAQEALSHPVMFRQKQVG 82
>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus
thermophilus [TaxId: 274]}
Length = 1504
Score = 25.9 bits (56), Expect = 5.5
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 188 GEVKNAETLN 197
GEV+ ET+N
Sbjct: 23 GEVEKPETIN 32
>d1iq8a4 d.17.6.1 (A:361-505) Archaeosine tRNA-guanine
transglycosylase, C2 domain {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 145
Score = 24.7 bits (54), Expect = 7.3
Identities = 7/45 (15%), Positives = 14/45 (31%), Gaps = 6/45 (13%)
Query: 170 YLENVYPESQMPLDYYYLGEV-KNAETLNCLDTM-----GRKTGE 208
YL YP +Q + + E + + + + G
Sbjct: 50 YLSLTYPFAQSEAEDDFKIEKPTKEDAIKYVMAIAEYQFGEGASR 94
>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable
domain, VL-kappa {Engineered (including hybrid species)}
Length = 107
Score = 24.3 bits (52), Expect = 8.2
Identities = 15/87 (17%), Positives = 23/87 (26%), Gaps = 5/87 (5%)
Query: 11 IPCSHVGHVFRDKSPYTFPGGVSKIVLHNAARVAEVWMDEWRDFYYAMNPGKSASVWMCG 70
I C V + Y G +L A + G ++ +
Sbjct: 21 ITCRASQGVTSALAWYRQKPGSPPQLLI---YDASSLESGVPSRFSGSGSGTEFTLTIST 77
Query: 71 GVLEIATCSHVGHVFRKSTPYTFPGGT 97
E + P+TF GGT
Sbjct: 78 LRPEDFATYYCQQ--LHFYPHTFGGGT 102
>d1omwa1 a.91.1.1 (A:29-185) G-protein coupled receptor kinase 2,
N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 157
Score = 24.5 bits (53), Expect = 8.5
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 147 VDVGDVSERKELRERLQCKSFRWYLENVYPESQMPLDYYY 186
D G+V+ K ++L FR + E++ +++Y
Sbjct: 20 EDRGEVTFEKIFSQKLGYLLFRDFCLKHLEEAKPLVEFYE 59
>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo
sapiens), alpha-chain [TaxId: 9606]}
Length = 111
Score = 24.0 bits (51), Expect = 9.8
Identities = 13/95 (13%), Positives = 27/95 (28%), Gaps = 2/95 (2%)
Query: 10 IIPCSHVGHVFRDKSPYTFPGGVSKIVLHNAARVAEVWMDEWRDFYYAMNPGKSASVWMC 69
I+ C + +F Y L + + + + D + K S+ +
Sbjct: 19 ILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFL-NKSAKHLSLHIV 77
Query: 70 GGVLEIATCSHVGHVFRKSTPYTFPGGTSNIVNHN 104
+ + + F GT +N N
Sbjct: 78 PSQPG-DSAVYFCAAMEGAQKLVFGQGTRLTINPN 111
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.457
Gapped
Lambda K H
0.267 0.0507 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 898,648
Number of extensions: 41146
Number of successful extensions: 138
Number of sequences better than 10.0: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 21
Length of query: 214
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 132
Effective length of database: 1,281,736
Effective search space: 169189152
Effective search space used: 169189152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.9 bits)