BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16416
         (64 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1XHB|A Chain A, The Crystal Structure Of Udp-Galnac: Polypeptide Alpha-N-
           Acetylgalactosaminyltransferase-T1
          Length = 472

 Score = 39.3 bits (90), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 20/30 (66%)

Query: 1   MPLDYYYLGEVKNAETLNCLDTMGRKTGEK 30
           +P  Y+ LGE++N ET  CLD M RK  EK
Sbjct: 337 IPRHYFSLGEIRNVETNQCLDNMARKENEK 366


>pdb|4AAW|A Chain A, S.Pneumoniae Glmu In Complex With An Antibacterial
           Inhibitor
 pdb|4AC3|A Chain A, S.Pneumoniae Glmu In Complex With An Antibacterial
           Inhibitor
          Length = 459

 Score = 25.8 bits (55), Expect = 7.0,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 18/43 (41%)

Query: 2   PLDYYYLGEVKNAETLNCLDTMGRKTGEKNVKNTRTGPKCFDN 44
           P  Y  +    NAE L  ++       EK +K   TG   FDN
Sbjct: 135 PFGYGRIVRNDNAEVLRIVEQKDATDFEKQIKEINTGTYVFDN 177


>pdb|1HM9|A Chain A, Crystal Structure Of S.Pneumoniae
           N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu,
           Bound To Acetyl Coenzyme A And Udp-N- Acetylglucosamine
 pdb|1HM9|B Chain B, Crystal Structure Of S.Pneumoniae
           N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu,
           Bound To Acetyl Coenzyme A And Udp-N- Acetylglucosamine
 pdb|1HM8|A Chain A, Crystal Structure Of S.Pneumoniae
           N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu,
           Bound To Acetyl Coenzyme A
 pdb|1HM8|B Chain B, Crystal Structure Of S.Pneumoniae
           N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu,
           Bound To Acetyl Coenzyme A
 pdb|1HM0|A Chain A, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine
           1-Phosphate Uridyltransferase, Glmu
 pdb|1HM0|B Chain B, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine
           1-Phosphate Uridyltransferase, Glmu
          Length = 468

 Score = 25.8 bits (55), Expect = 7.0,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 18/43 (41%)

Query: 2   PLDYYYLGEVKNAETLNCLDTMGRKTGEKNVKNTRTGPKCFDN 44
           P  Y  +    NAE L  ++       EK +K   TG   FDN
Sbjct: 144 PFGYGRIVRNDNAEVLRIVEQKDATDFEKQIKEINTGTYVFDN 186


>pdb|1G95|A Chain A, Crystal Structure Of S.Pneumoniae Glmu, Apo Form
 pdb|1G97|A Chain A, S.Pneumoniae Glmu Complexed With Udp-N-Acetylglucosamine
           And Mg2+
          Length = 459

 Score = 25.8 bits (55), Expect = 7.1,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 18/43 (41%)

Query: 2   PLDYYYLGEVKNAETLNCLDTMGRKTGEKNVKNTRTGPKCFDN 44
           P  Y  +    NAE L  ++       EK +K   TG   FDN
Sbjct: 135 PFGYGRIVRNDNAEVLRIVEQKDATDFEKQIKEINTGTYVFDN 177


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.137    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,048,839
Number of Sequences: 62578
Number of extensions: 62935
Number of successful extensions: 121
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 117
Number of HSP's gapped (non-prelim): 4
length of query: 64
length of database: 14,973,337
effective HSP length: 35
effective length of query: 29
effective length of database: 12,783,107
effective search space: 370710103
effective search space used: 370710103
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)