Query psy16416
Match_columns 64
No_of_seqs 77 out of 79
Neff 3.7
Searched_HMMs 46136
Date Fri Aug 16 20:45:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16416.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16416hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3737|consensus 97.8 9.8E-06 2.1E-10 64.8 1.5 36 4-39 477-512 (603)
2 PF00652 Ricin_B_lectin: Ricin 97.3 0.00022 4.8E-09 42.3 2.9 32 7-38 1-34 (124)
3 KOG3736|consensus 96.9 0.00087 1.9E-08 54.0 3.0 46 2-47 448-498 (578)
4 cd00161 RICIN Ricin-type beta- 96.7 0.0055 1.2E-07 35.5 4.6 31 9-39 1-32 (124)
5 PF00652 Ricin_B_lectin: Ricin 95.4 0.0093 2E-07 35.2 1.6 30 9-38 89-118 (124)
6 cd00161 RICIN Ricin-type beta- 94.7 0.047 1E-06 31.5 3.2 31 8-38 43-73 (124)
7 smart00458 RICIN Ricin-type be 94.5 0.055 1.2E-06 31.8 3.1 32 8-39 78-109 (117)
8 smart00458 RICIN Ricin-type be 92.3 0.21 4.5E-06 29.3 3.1 29 8-38 38-66 (117)
9 PF14200 RicinB_lectin_2: Rici 88.1 1.4 3.1E-05 26.4 4.3 33 9-41 17-51 (105)
10 PF14200 RicinB_lectin_2: Rici 87.6 0.68 1.5E-05 27.9 2.7 32 10-41 65-99 (105)
11 KOG3738|consensus 86.2 0.32 6.9E-06 39.5 0.9 31 7-39 433-463 (559)
12 PF07206 Baculo_LEF-10: Baculo 56.4 11 0.00024 23.4 2.1 19 43-61 17-35 (71)
13 PF06582 DUF1136: Repeat of un 51.0 4.2 9.1E-05 20.9 -0.3 9 55-63 1-9 (28)
14 KOG3736|consensus 49.5 16 0.00035 30.0 2.6 29 9-39 536-564 (578)
15 PF03905 Corona_NS4: Coronavir 38.3 13 0.00028 21.4 0.3 16 30-45 29-45 (45)
16 PF14251 DUF4346: Domain of un 33.6 28 0.0006 23.6 1.4 13 49-61 16-28 (119)
17 PF03498 CDtoxinA: Cytolethal 32.0 39 0.00083 23.0 2.0 27 10-36 98-127 (150)
18 PF10411 DsbC_N: Disulfide bon 26.1 46 0.00099 18.7 1.3 12 44-55 36-47 (57)
19 KOG3738|consensus 25.2 44 0.00096 27.6 1.5 30 8-38 515-544 (559)
20 TIGR02572 LcrR type III secret 24.5 57 0.0012 22.6 1.8 22 42-63 38-59 (139)
21 PRK02302 hypothetical protein; 24.1 47 0.001 21.3 1.2 16 45-60 31-46 (89)
22 TIGR00686 phnA alkylphosphonat 23.2 54 0.0012 21.9 1.4 16 38-53 5-20 (109)
23 PRK10220 hypothetical protein; 23.0 59 0.0013 21.8 1.6 16 38-53 6-21 (111)
24 COG2824 PhnA Uncharacterized Z 21.8 60 0.0013 21.8 1.4 14 38-51 6-19 (112)
25 PF05612 DUF781: Mouse protein 21.5 31 0.00068 26.9 0.0 22 39-60 35-59 (356)
26 PF09902 DUF2129: Uncharacteri 21.1 61 0.0013 19.8 1.2 16 45-60 25-40 (71)
27 PRK02886 hypothetical protein; 20.9 60 0.0013 20.7 1.2 16 45-60 29-44 (87)
No 1
>KOG3737|consensus
Probab=97.77 E-value=9.8e-06 Score=64.84 Aligned_cols=36 Identities=28% Similarity=0.383 Sum_probs=33.1
Q ss_pred CCceeeeEEeCCCCCcccCCCCCCCCceeEEcCCCC
Q psy16416 4 DYYYLGEVKNAETLNCLDTMGRKTGEKNVKNTRTGP 39 (64)
Q Consensus 4 D~~a~GeIRN~gS~lCLDt~gr~~g~~lGL~~C~~~ 39 (64)
....|||||++++..|||+||...+.++||.+|.|-
T Consensus 477 ~N~~WGE~R~~at~~ClDsMG~~p~g~mglt~CHg~ 512 (603)
T KOG3737|consen 477 KNVDWGEIRGFATAYCLDSMGKTPGGFMGLTPCHGM 512 (603)
T ss_pred CCCcchhccCcccchhHHhcCCCCCCccccccccCC
Confidence 345899999999999999999999999999999875
No 2
>PF00652 Ricin_B_lectin: Ricin-type beta-trefoil lectin domain; InterPro: IPR000772 Ricin is a legume lectin from the seeds of the castor bean plant, Ricinus communis. The seeds are poisonous to people, animals and insects and just one milligram of ricin can kill an adult. Primary structure analysis has shown the presence of a similar domain in many carbohydrate-recognition proteins like plant and bacterial AB-toxins, glycosidases or proteases [, , ]. This domain, known as the ricin B lectin domain, can be present in one or more copies and has been shown in some instance to bind simple sugars, such as galactose or lactose. The ricin B lectin domain is composed of three homologous subdomains of 40 amino acids (alpha, beta and gamma) and a linker peptide of around 15 residues (lambda). It has been proposed that the ricin B lectin domain arose by gene triplication from a primitive 40 residue galactoside-binding peptide [, ]. The most characteristic, though not completely conserved, sequence feature is the presence of a Q-W pattern. Consequently, the ricin B lectin domain as also been refered as the (QxW)3 domain and the three homologous regions as the QxW repeats [, ]. A disulphide bond is also conserved in some of the QxW repeats []. The 3D structure of the ricin B chain has shown that the three QxW repeats pack around a pseudo threefold axis that is stabilised by the lambda linker []. The ricin B lectin domain has no major segments of a helix or beta sheet but each of the QxW repeats contains an omega loop []. An idealized omega-loop is a compact, contiguous segment of polypeptide that traces a 'loop-shaped' path in three-dimensional space; the main chain resembles a Greek omega.; PDB: 2VLC_B 3A22_B 3A21_B 3A23_B 1GGP_B 1VCL_A 2Z48_B 2Z49_A 2D7R_A 2D7I_A ....
Probab=97.34 E-value=0.00022 Score=42.28 Aligned_cols=32 Identities=28% Similarity=0.374 Sum_probs=26.4
Q ss_pred eeeeEEeCC-CCCcccCC-CCCCCCceeEEcCCC
Q psy16416 7 YLGEVKNAE-TLNCLDTM-GRKTGEKNVKNTRTG 38 (64)
Q Consensus 7 a~GeIRN~g-S~lCLDt~-gr~~g~~lGL~~C~~ 38 (64)
|+|+||+.. +++|||.. ....+.++.|++|.+
T Consensus 1 ~~g~i~~~~~~~~cl~~~~~~~~~~~v~l~~c~~ 34 (124)
T PF00652_consen 1 ASGYIRNVNKSGLCLDVQGSTKNGSPVVLYPCDG 34 (124)
T ss_dssp EEEEEEEEEGGGEEEEEGGSSSTTTBEEEEE--S
T ss_pred CceEEEEeeCCCCeEEEcCCCCCCCEEEEEECCC
Confidence 689999988 99999988 556678899999999
No 3
>KOG3736|consensus
Probab=96.86 E-value=0.00087 Score=54.04 Aligned_cols=46 Identities=30% Similarity=0.395 Sum_probs=35.2
Q ss_pred CCCC-ceeeeEEeCCCCCcccCCCCCC--CCceeEEcCCCCc--ccccccc
Q psy16416 2 PLDY-YYLGEVKNAETLNCLDTMGRKT--GEKNVKNTRTGPK--CFDNYTA 47 (64)
Q Consensus 2 P~D~-~a~GeIRN~gS~lCLDt~gr~~--g~~lGL~~C~~~~--~~~~~~~ 47 (64)
|.+. .++|+|+|..++.|+|++.... +..+++++|.|.. =+-.||+
T Consensus 448 ~~~~~~~~G~i~~~~~~~cld~~~~~~~~~~~~~~~~Ch~~~~~Q~~~yT~ 498 (578)
T KOG3736|consen 448 PTPHVYASGEIRNGNPNLCLDTERAPAGQGMAVGLYPCHGPGGNQYFPYTK 498 (578)
T ss_pred CCCcccccceeccCCcchhhhhhchhccCCCcceEecCCCccccccccccC
Confidence 4554 5789999988999999998444 5789999999976 3334444
No 4
>cd00161 RICIN Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.
Probab=96.65 E-value=0.0055 Score=35.45 Aligned_cols=31 Identities=29% Similarity=0.401 Sum_probs=26.7
Q ss_pred eeEEeCC-CCCcccCCCCCCCCceeEEcCCCC
Q psy16416 9 GEVKNAE-TLNCLDTMGRKTGEKNVKNTRTGP 39 (64)
Q Consensus 9 GeIRN~g-S~lCLDt~gr~~g~~lGL~~C~~~ 39 (64)
|+|++.. +++|||..+...+..+.+.+|.+.
T Consensus 1 ~~~~~~~~~~~cL~~~~~~~~~~v~~~~c~~~ 32 (124)
T cd00161 1 GTIRNVNNTGLCLDVNGGSDGGPVQLYPCHGN 32 (124)
T ss_pred CeeEeCCCCCeEEECCCCCCCCEEEEEECCCC
Confidence 5788988 999999887666778999999987
No 5
>PF00652 Ricin_B_lectin: Ricin-type beta-trefoil lectin domain; InterPro: IPR000772 Ricin is a legume lectin from the seeds of the castor bean plant, Ricinus communis. The seeds are poisonous to people, animals and insects and just one milligram of ricin can kill an adult. Primary structure analysis has shown the presence of a similar domain in many carbohydrate-recognition proteins like plant and bacterial AB-toxins, glycosidases or proteases [, , ]. This domain, known as the ricin B lectin domain, can be present in one or more copies and has been shown in some instance to bind simple sugars, such as galactose or lactose. The ricin B lectin domain is composed of three homologous subdomains of 40 amino acids (alpha, beta and gamma) and a linker peptide of around 15 residues (lambda). It has been proposed that the ricin B lectin domain arose by gene triplication from a primitive 40 residue galactoside-binding peptide [, ]. The most characteristic, though not completely conserved, sequence feature is the presence of a Q-W pattern. Consequently, the ricin B lectin domain as also been refered as the (QxW)3 domain and the three homologous regions as the QxW repeats [, ]. A disulphide bond is also conserved in some of the QxW repeats []. The 3D structure of the ricin B chain has shown that the three QxW repeats pack around a pseudo threefold axis that is stabilised by the lambda linker []. The ricin B lectin domain has no major segments of a helix or beta sheet but each of the QxW repeats contains an omega loop []. An idealized omega-loop is a compact, contiguous segment of polypeptide that traces a 'loop-shaped' path in three-dimensional space; the main chain resembles a Greek omega.; PDB: 2VLC_B 3A22_B 3A21_B 3A23_B 1GGP_B 1VCL_A 2Z48_B 2Z49_A 2D7R_A 2D7I_A ....
Probab=95.45 E-value=0.0093 Score=35.22 Aligned_cols=30 Identities=30% Similarity=0.471 Sum_probs=25.3
Q ss_pred eeEEeCCCCCcccCCCCCCCCceeEEcCCC
Q psy16416 9 GEVKNAETLNCLDTMGRKTGEKNVKNTRTG 38 (64)
Q Consensus 9 GeIRN~gS~lCLDt~gr~~g~~lGL~~C~~ 38 (64)
|.|+|..+++|||..+..++.+|.+.+|.+
T Consensus 89 ~~i~n~~s~~cL~~~~~~~~~~l~~~~c~~ 118 (124)
T PF00652_consen 89 GRIRNKNSGLCLDVKGGSDGNPLVLWPCNG 118 (124)
T ss_dssp SBEEETTTTEEEEEGGGSTTEBEEEEE-TS
T ss_pred eeEEeCCCCEEEEecCCCCCCEEEEEECCC
Confidence 899999999999987666888899999965
No 6
>cd00161 RICIN Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.
Probab=94.75 E-value=0.047 Score=31.48 Aligned_cols=31 Identities=29% Similarity=0.369 Sum_probs=26.5
Q ss_pred eeeEEeCCCCCcccCCCCCCCCceeEEcCCC
Q psy16416 8 LGEVKNAETLNCLDTMGRKTGEKNVKNTRTG 38 (64)
Q Consensus 8 ~GeIRN~gS~lCLDt~gr~~g~~lGL~~C~~ 38 (64)
-|.|++..+++|||..+...+..+.+.+|.+
T Consensus 43 ~g~~~~~~~~~Cl~~~~~~~~~~~~~~~c~~ 73 (124)
T cd00161 43 DGTIRIKSSNLCLDVGGDAPGSKVRLYTCSG 73 (124)
T ss_pred CCeEEEcCCCeEEcccCCCCCCEEEEEECCC
Confidence 4889988889999987766778899999987
No 7
>smart00458 RICIN Ricin-type beta-trefoil. Carbohydrate-binding domain formed from presumed gene triplication.
Probab=94.46 E-value=0.055 Score=31.78 Aligned_cols=32 Identities=31% Similarity=0.437 Sum_probs=25.5
Q ss_pred eeeEEeCCCCCcccCCCCCCCCceeEEcCCCC
Q psy16416 8 LGEVKNAETLNCLDTMGRKTGEKNVKNTRTGP 39 (64)
Q Consensus 8 ~GeIRN~gS~lCLDt~gr~~g~~lGL~~C~~~ 39 (64)
-|.|+|..+++|||..+.....++.+.+|.+.
T Consensus 78 ~~~i~~~~~~~cl~~~~~~~~~~~~~~~c~~~ 109 (117)
T smart00458 78 DGTIRNPDSGLCLDVKDGNTGTKVILWTCNGN 109 (117)
T ss_pred CeeEEeCCCCEEEecCCCCCCceEEEEeCCCC
Confidence 38999999999999766544456999999864
No 8
>smart00458 RICIN Ricin-type beta-trefoil. Carbohydrate-binding domain formed from presumed gene triplication.
Probab=92.28 E-value=0.21 Score=29.30 Aligned_cols=29 Identities=24% Similarity=0.275 Sum_probs=23.7
Q ss_pred eeeEEeCCCCCcccCCCCCCCCceeEEcCCC
Q psy16416 8 LGEVKNAETLNCLDTMGRKTGEKNVKNTRTG 38 (64)
Q Consensus 8 ~GeIRN~gS~lCLDt~gr~~g~~lGL~~C~~ 38 (64)
-|.|++. +++|||..+... ..+.|.+|.+
T Consensus 38 ~g~~~~~-~~~Cl~~~~~~~-~~v~l~~c~~ 66 (117)
T smart00458 38 DGAIRIA-TDLCLTANGNTG-STVTLYSCDG 66 (117)
T ss_pred CCeEEec-CCccCccCCCCC-CEEEEEECCC
Confidence 4888888 899999776543 6799999987
No 9
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=88.07 E-value=1.4 Score=26.44 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=26.2
Q ss_pred eeEEeCCCCCcccCCC--CCCCCceeEEcCCCCcc
Q psy16416 9 GEVKNAETLNCLDTMG--RKTGEKNVKNTRTGPKC 41 (64)
Q Consensus 9 GeIRN~gS~lCLDt~g--r~~g~~lGL~~C~~~~~ 41 (64)
=.|+|+.+++|||-.+ ..++..+.+++|.+...
T Consensus 17 Y~i~n~~sg~~L~v~~~~~~~g~~v~~~~~~~~~~ 51 (105)
T PF14200_consen 17 YKIRNVNSGKYLDVAGGSTANGTNVQQWTCNGNDN 51 (105)
T ss_dssp EEEEETTTTEEEEEGCTTCSTTEBEEEEESSSSGG
T ss_pred EEEEECCCCCEEEeCCCCcCCCcEEEEecCCCCcC
Confidence 4789999999999654 35677899999988544
No 10
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=87.55 E-value=0.68 Score=27.86 Aligned_cols=32 Identities=16% Similarity=0.236 Sum_probs=23.9
Q ss_pred eEEeCCCCCcccCC--CCCCCCceeEEcC-CCCcc
Q psy16416 10 EVKNAETLNCLDTM--GRKTGEKNVKNTR-TGPKC 41 (64)
Q Consensus 10 eIRN~gS~lCLDt~--gr~~g~~lGL~~C-~~~~~ 41 (64)
.|+|..+++|||-. ....+..+.+++| .+..+
T Consensus 65 ~I~n~~s~~~Ldv~~~~~~~g~~v~~~~~~~~~~~ 99 (105)
T PF14200_consen 65 RIRNKNSGKVLDVAGGSTANGTNVQQWEYDNGSDN 99 (105)
T ss_dssp EEEETSTTEEEEEGGGSSSTTEBEEEEE-STSSGG
T ss_pred EEEECCCCcEEEECCCCCCCCCEEEEEeCCCCCcc
Confidence 78999999999943 4456788999999 66543
No 11
>KOG3738|consensus
Probab=86.22 E-value=0.32 Score=39.52 Aligned_cols=31 Identities=26% Similarity=0.404 Sum_probs=27.0
Q ss_pred eeeeEEeCCCCCcccCCCCCCCCceeEEcCCCC
Q psy16416 7 YLGEVKNAETLNCLDTMGRKTGEKNVKNTRTGP 39 (64)
Q Consensus 7 a~GeIRN~gS~lCLDt~gr~~g~~lGL~~C~~~ 39 (64)
++|.||+ ...|||++++++.+.+||++|.+.
T Consensus 433 ~~g~lrq--g~~Cl~s~~~~~~~~~gl~~C~~s 463 (559)
T KOG3738|consen 433 ATGTLRQ--GDNCLDSQGQNSQEALGLASCHGS 463 (559)
T ss_pred cccchhc--cchhhhhhhcccccCcceeecccC
Confidence 6688887 467999999999889999999986
No 12
>PF07206 Baculo_LEF-10: Baculovirus late expression factor 10 (LEF-10); InterPro: IPR009855 This family consists of several Baculovirus specific late expression factor 10 (LEF-10) sequences. LEF-10 is thought to be a late expressed structural protein although its exact function is unknown [].
Probab=56.38 E-value=11 Score=23.42 Aligned_cols=19 Identities=42% Similarity=0.573 Sum_probs=15.1
Q ss_pred ccccccCCcEEEEEecCCC
Q psy16416 43 DNYTAEDNKYIIIYLDRQH 61 (64)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~ 61 (64)
||..--||+|||.|.=-|+
T Consensus 17 ~Nl~Lidn~Yii~nVvd~~ 35 (71)
T PF07206_consen 17 NNLELIDNKYIILNVVDQE 35 (71)
T ss_pred cCeEEecCcEEEEEEEeCC
Confidence 6777789999999975554
No 13
>PF06582 DUF1136: Repeat of unknown function (DUF1136); InterPro: IPR010939 This family consists of several eukaryote specific repeats of unknown function. This repeat seems to always be found with IPR007110 from INTERPRO.
Probab=50.97 E-value=4.2 Score=20.91 Aligned_cols=9 Identities=67% Similarity=1.054 Sum_probs=7.3
Q ss_pred EEecCCCCC
Q psy16416 55 IYLDRQHPR 63 (64)
Q Consensus 55 ~~~~~~~~~ 63 (64)
|++|-|||-
T Consensus 1 I~~dTQhp~ 9 (28)
T PF06582_consen 1 IILDTQHPE 9 (28)
T ss_pred CcccccCHH
Confidence 678999983
No 14
>KOG3736|consensus
Probab=49.50 E-value=16 Score=29.98 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=24.2
Q ss_pred eeEEeCCCCCcccCCCCCCCCceeEEcCCCC
Q psy16416 9 GEVKNAETLNCLDTMGRKTGEKNVKNTRTGP 39 (64)
Q Consensus 9 GeIRN~gS~lCLDt~gr~~g~~lGL~~C~~~ 39 (64)
|.|+|..+++||+....+.+ +-|..|...
T Consensus 536 ~~i~~~~sg~CL~~~~~~~~--~~l~~c~~~ 564 (578)
T KOG3736|consen 536 GTLYHRNSGKCLEAAVDKNG--LILVACDPS 564 (578)
T ss_pred CceEcCCCCccccccCCCCC--ceEeecCCC
Confidence 99999999999998777666 778888764
No 15
>PF03905 Corona_NS4: Coronavirus non-structural protein NS4; InterPro: IPR005603 This non-structural protein does not appear to be essential for viral growth in tissue culture and its physiological role is unknown.
Probab=38.30 E-value=13 Score=21.44 Aligned_cols=16 Identities=38% Similarity=0.611 Sum_probs=10.7
Q ss_pred ceeEE-cCCCCcccccc
Q psy16416 30 KNVKN-TRTGPKCFDNY 45 (64)
Q Consensus 30 ~lGL~-~C~~~~~~~~~ 45 (64)
+.|+. +=+|++|||-|
T Consensus 29 s~G~DtST~G~~~~~~y 45 (45)
T PF03905_consen 29 SIGIDTSTTGFKCFSYY 45 (45)
T ss_pred cccccccccCcceeecC
Confidence 34443 45799999865
No 16
>PF14251 DUF4346: Domain of unknown function (DUF4346)
Probab=33.60 E-value=28 Score=23.56 Aligned_cols=13 Identities=46% Similarity=0.887 Sum_probs=10.8
Q ss_pred CCcEEEEEecCCC
Q psy16416 49 DNKYIIIYLDRQH 61 (64)
Q Consensus 49 ~~~~~~~~~~~~~ 61 (64)
-+.|.|||+||+-
T Consensus 16 p~GYfiI~~d~~~ 28 (119)
T PF14251_consen 16 PAGYFIIYVDREA 28 (119)
T ss_pred CCccEEEEEeCCC
Confidence 4679999999974
No 17
>PF03498 CDtoxinA: Cytolethal distending toxin A/C family; InterPro: IPR003558 Escherichia coli, Haemophilus spp and Campylobacter spp. all produce a toxin that is seen to cause distension in certain cell lines [, ], which eventually disintegrate and die. This novel toxin, termed cytolethal distending toxin (cdt), has three subunits: A, B and C. Their sizes are approx. 27.7, 29.5 and 19.9kDa respectively [], and they appear to be entirely novel []. Further research on the complete toxin has revealed that it blocks the cell cycle at stage G2, through inactivation of the cyclin-dependent kinase Cdk1, and without induction of DNA breaks. This leads to multipolar abortive mitosis and micronucleation, associated with centrosomal amplification []. The roles of each subunit are unclear, but it is believed that they have separate roles in pathogenicity. This entry represents the A and C subunits.; GO: 0009405 pathogenesis; PDB: 2F2F_A 1SR4_C.
Probab=32.03 E-value=39 Score=23.02 Aligned_cols=27 Identities=19% Similarity=0.145 Sum_probs=15.8
Q ss_pred eEEeCCCCCcccCCCCCC---CCceeEEcC
Q psy16416 10 EVKNAETLNCLDTMGRKT---GEKNVKNTR 36 (64)
Q Consensus 10 eIRN~gS~lCLDt~gr~~---g~~lGL~~C 36 (64)
.|||.+++.||-+..... ...++|.+|
T Consensus 98 QIks~~~~~Cl~~~~~~~~~~~~~i~l~~C 127 (150)
T PF03498_consen 98 QIKSLSTGECLQTFNNSRTPIYYSIGLTPC 127 (150)
T ss_dssp EEEETTT--EEEE-STTSS-SSEEEEEE--
T ss_pred EEEecCCCceEEecCCCceeEEeeEEeeeC
Confidence 689999999997544332 334999999
No 18
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=26.12 E-value=46 Score=18.73 Aligned_cols=12 Identities=42% Similarity=0.794 Sum_probs=9.8
Q ss_pred cccccCCcEEEE
Q psy16416 44 NYTAEDNKYIII 55 (64)
Q Consensus 44 ~~~~~~~~~~~~ 55 (64)
-|+.+|.+|+|.
T Consensus 36 ~Y~~~dg~yli~ 47 (57)
T PF10411_consen 36 LYVDEDGRYLIQ 47 (57)
T ss_dssp EEEETTSSEEEE
T ss_pred EEEcCCCCEEEE
Confidence 488889999875
No 19
>KOG3738|consensus
Probab=25.17 E-value=44 Score=27.55 Aligned_cols=30 Identities=20% Similarity=0.059 Sum_probs=22.4
Q ss_pred eeeEEeCCCCCcccCCCCCCCCceeEEcCCC
Q psy16416 8 LGEVKNAETLNCLDTMGRKTGEKNVKNTRTG 38 (64)
Q Consensus 8 ~GeIRN~gS~lCLDt~gr~~g~~lGL~~C~~ 38 (64)
-|.+.+.++++|||........ +.+++|..
T Consensus 515 ~~~l~h~~s~KOGd~~~~g~~~-l~~~~C~~ 544 (559)
T KOG3738|consen 515 GGHLLHAGSHLCLDNPLKGRWL-LEVSTCES 544 (559)
T ss_pred CCchhcccccceeccccCCCcc-eeeccccc
Confidence 3788899999999976554433 77788864
No 20
>TIGR02572 LcrR type III secretion system regulator LcrR. This protein is found in type III secretion operons and has been characterized in Yersinia as a regulator of the Low-Calcium Respone (LCR).
Probab=24.46 E-value=57 Score=22.64 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=18.5
Q ss_pred cccccccCCcEEEEEecCCCCC
Q psy16416 42 FDNYTAEDNKYIIIYLDRQHPR 63 (64)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~ 63 (64)
-=-|--|.+..||+.|.|.+||
T Consensus 38 ~lawRVE~~rviI~lLrR~~~~ 59 (139)
T TIGR02572 38 ELAWRVEEERVWIVLLRRVSQR 59 (139)
T ss_pred EEEEEecCCEEEEEEEEEcccc
Confidence 3456778999999999999987
No 21
>PRK02302 hypothetical protein; Provisional
Probab=24.10 E-value=47 Score=21.26 Aligned_cols=16 Identities=19% Similarity=0.953 Sum_probs=13.2
Q ss_pred ccccCCcEEEEEecCC
Q psy16416 45 YTAEDNKYIIIYLDRQ 60 (64)
Q Consensus 45 ~~~~~~~~~~~~~~~~ 60 (64)
|.....||.++|.|.+
T Consensus 31 Y~Skk~kYvvlYvn~~ 46 (89)
T PRK02302 31 YHSKRSRYLVLYVNKE 46 (89)
T ss_pred EEeccccEEEEEECHH
Confidence 6677889999999864
No 22
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=23.22 E-value=54 Score=21.89 Aligned_cols=16 Identities=38% Similarity=0.696 Sum_probs=13.2
Q ss_pred CCcccccccccCCcEE
Q psy16416 38 GPKCFDNYTAEDNKYI 53 (64)
Q Consensus 38 ~~~~~~~~~~~~~~~~ 53 (64)
.|+|...||-||....
T Consensus 5 CP~C~seytY~dg~~~ 20 (109)
T TIGR00686 5 CPKCNSEYTYHDGTQL 20 (109)
T ss_pred CCcCCCcceEecCCee
Confidence 4899999999988753
No 23
>PRK10220 hypothetical protein; Provisional
Probab=22.95 E-value=59 Score=21.77 Aligned_cols=16 Identities=50% Similarity=0.767 Sum_probs=13.3
Q ss_pred CCcccccccccCCcEE
Q psy16416 38 GPKCFDNYTAEDNKYI 53 (64)
Q Consensus 38 ~~~~~~~~~~~~~~~~ 53 (64)
.|+|..+||-||+.-+
T Consensus 6 CP~C~seytY~d~~~~ 21 (111)
T PRK10220 6 CPKCNSEYTYEDNGMY 21 (111)
T ss_pred CCCCCCcceEcCCCeE
Confidence 4899999999998753
No 24
>COG2824 PhnA Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=21.78 E-value=60 Score=21.84 Aligned_cols=14 Identities=50% Similarity=0.817 Sum_probs=12.5
Q ss_pred CCcccccccccCCc
Q psy16416 38 GPKCFDNYTAEDNK 51 (64)
Q Consensus 38 ~~~~~~~~~~~~~~ 51 (64)
.|+|.+.||.||.-
T Consensus 6 cp~c~sEytYed~~ 19 (112)
T COG2824 6 CPKCNSEYTYEDGG 19 (112)
T ss_pred CCccCCceEEecCc
Confidence 48999999999987
No 25
>PF05612 DUF781: Mouse protein of unknown function (DUF781); InterPro: IPR008499 This family consists of uncharacterised proteins found in Mus musculus (mouse), man, zebra fish and other eukaryotes.
Probab=21.46 E-value=31 Score=26.92 Aligned_cols=22 Identities=45% Similarity=0.869 Sum_probs=17.6
Q ss_pred CcccccccccCCcEEE---EEecCC
Q psy16416 39 PKCFDNYTAEDNKYII---IYLDRQ 60 (64)
Q Consensus 39 ~~~~~~~~~~~~~~~~---~~~~~~ 60 (64)
|.=+..|..+++|||| +|+||.
T Consensus 35 p~~lsd~~v~n~~~iInpW~Y~~Rm 59 (356)
T PF05612_consen 35 PGQLSDYPVENGKYIINPWNYLERM 59 (356)
T ss_pred cccHhhCccccCCEEecccccHHHH
Confidence 4457889999999998 677763
No 26
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=21.11 E-value=61 Score=19.75 Aligned_cols=16 Identities=25% Similarity=0.881 Sum_probs=13.0
Q ss_pred ccccCCcEEEEEecCC
Q psy16416 45 YTAEDNKYIIIYLDRQ 60 (64)
Q Consensus 45 ~~~~~~~~~~~~~~~~ 60 (64)
|.....+|.++|.|..
T Consensus 25 Y~Skk~kYvvlYvn~~ 40 (71)
T PF09902_consen 25 YVSKKMKYVVLYVNEE 40 (71)
T ss_pred EEECCccEEEEEECHH
Confidence 6667789999999864
No 27
>PRK02886 hypothetical protein; Provisional
Probab=20.89 E-value=60 Score=20.73 Aligned_cols=16 Identities=31% Similarity=0.706 Sum_probs=13.1
Q ss_pred ccccCCcEEEEEecCC
Q psy16416 45 YTAEDNKYIIIYLDRQ 60 (64)
Q Consensus 45 ~~~~~~~~~~~~~~~~ 60 (64)
|.....+|+++|.|.+
T Consensus 29 Y~Skr~kYvvlYvn~~ 44 (87)
T PRK02886 29 YVSKRLKYAVLYCDME 44 (87)
T ss_pred EEeccccEEEEEECHH
Confidence 6677889999999864
Done!