RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16416
         (64 letters)



>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil,
           rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens}
           PDB: 2d7r_A*
          Length = 570

 Score = 31.0 bits (69), Expect = 0.013
 Identities = 8/30 (26%), Positives = 11/30 (36%)

Query: 1   MPLDYYYLGEVKNAETLNCLDTMGRKTGEK 30
           +       GE++N  T  C DT     G  
Sbjct: 420 VEPPAAAWGEIRNVGTGLCADTKHGALGSP 449


>1vcl_A Hemolytic lectin CEL-III; hemolysis, hemagglutination,
          pore-forming, calcium, toxin; HET: BTB; 1.70A
          {Cucumaria echinata} SCOP: b.42.2.1 b.42.2.1 d.281.1.1
          PDB: 2z48_A* 2z49_A*
          Length = 432

 Score = 27.0 bits (59), Expect = 0.33
 Identities = 5/25 (20%), Positives = 15/25 (60%)

Query: 4  DYYYLGEVKNAETLNCLDTMGRKTG 28
          +   +GE+++ ++  C+D +G +  
Sbjct: 6  NPLDIGELRSFKSKQCVDIVGNQGS 30


>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1;
           glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus
           musculus} SCOP: b.42.2.1 c.68.1.17
          Length = 472

 Score = 25.9 bits (56), Expect = 1.0
 Identities = 16/30 (53%), Positives = 20/30 (66%)

Query: 1   MPLDYYYLGEVKNAETLNCLDTMGRKTGEK 30
           +P  Y+ LGE++N ET  CLD M RK  EK
Sbjct: 337 IPRHYFSLGEIRNVETNQCLDNMARKENEK 366


>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2,
           protein-UDP; ppgalnact, mucin, glycosyltransferase; HET:
           UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
          Length = 501

 Score = 25.5 bits (55), Expect = 1.3
 Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 2/27 (7%)

Query: 4   DYYYLGEVKNAETLNCLDTMGRKTGEK 30
                G ++     NCLDT+G      
Sbjct: 373 QDIAFGALQQGT--NCLDTLGHFADGV 397


>1ugj_A Riken cDNA 2310057J16 protein; structural genomics, riken
          structural genomics/proteomics initiative, RSGI,
          unknown function; NMR {Mus musculus} SCOP: b.41.1.3
          Length = 141

 Score = 24.1 bits (52), Expect = 2.9
 Identities = 7/23 (30%), Positives = 14/23 (60%)

Query: 33 KNTRTGPKCFDNYTAEDNKYIII 55
           +  +GP+ +   +A+ NK+II 
Sbjct: 2  SSGSSGPRLYKEPSAKSNKFIIH 24


>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA
          polymerase, nucleotidyltransferase, transcription,
          transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
          Length = 1407

 Score = 23.4 bits (51), Expect = 7.1
 Identities = 7/10 (70%), Positives = 8/10 (80%)

Query: 9  GEVKNAETLN 18
          GEVK  ET+N
Sbjct: 36 GEVKKPETIN 45


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.317    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0749    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 929,319
Number of extensions: 35599
Number of successful extensions: 81
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 6
Length of query: 64
Length of database: 6,701,793
Length adjustment: 35
Effective length of query: 29
Effective length of database: 5,724,558
Effective search space: 166012182
Effective search space used: 166012182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.4 bits)